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authorCoprDistGit <infra@openeuler.org>2023-05-17 03:29:26 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-17 03:29:26 +0000
commitc1f9483ea9b8e9e1fc67cd6a43514dddc0891baa (patch)
tree5272df5144904aa45c980711921c986d275d62db
parent5127e186e11b3f4b46cc0670d11f3c7698610d01 (diff)
automatic import of python-smriprep
-rw-r--r--.gitignore1
-rw-r--r--python-smriprep.spec187
-rw-r--r--sources1
3 files changed, 189 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
index e69de29..1c95b59 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/smriprep-0.11.1.tar.gz
diff --git a/python-smriprep.spec b/python-smriprep.spec
new file mode 100644
index 0000000..9c73e42
--- /dev/null
+++ b/python-smriprep.spec
@@ -0,0 +1,187 @@
+%global _empty_manifest_terminate_build 0
+Name: python-smriprep
+Version: 0.11.1
+Release: 1
+Summary: sMRIPrep (Structural MRI PREProcessing) pipeline
+License: 3-clause BSD
+URL: https://github.com/nipreps/smriprep
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/9e/86/0e5ef7159a9e785e57ba47a06dbf8e82e0efd5584d491075400783aa15f8/smriprep-0.11.1.tar.gz
+BuildArch: noarch
+
+Requires: python3-indexed-gzip
+Requires: python3-lockfile
+Requires: python3-looseversion
+Requires: python3-matplotlib
+Requires: python3-nibabel
+Requires: python3-nipype
+Requires: python3-niworkflows
+Requires: python3-numpy
+Requires: python3-packaging
+Requires: python3-pybids
+Requires: python3-pyyaml
+Requires: python3-templateflow
+Requires: python3-datalad
+Requires: python3-nbsphinx
+Requires: python3-packaging
+Requires: python3-pydot
+Requires: python3-sphinx
+Requires: python3-sphinx-argparse
+Requires: python3-sphinx-rtd-theme
+Requires: python3-sphinxcontrib-apidoc
+Requires: python3-sphinxcontrib-napoleon
+Requires: python3-sphinxcontrib-versioning
+Requires: python3-duecredit
+Requires: python3-psutil
+Requires: python3-coverage
+Requires: python3-codecov
+Requires: python3-pytest
+Requires: python3-pytest-cov
+Requires: python3-pytest-env
+Requires: python3-datalad
+Requires: python3-nbsphinx
+Requires: python3-packaging
+Requires: python3-pydot
+Requires: python3-sphinx
+Requires: python3-sphinx-argparse
+Requires: python3-sphinx-rtd-theme
+Requires: python3-sphinxcontrib-apidoc
+Requires: python3-sphinxcontrib-napoleon
+Requires: python3-sphinxcontrib-versioning
+Requires: python3-nbsphinx
+Requires: python3-packaging
+Requires: python3-pydot
+Requires: python3-sphinx
+Requires: python3-sphinx-argparse
+Requires: python3-sphinx-rtd-theme
+Requires: python3-sphinxcontrib-apidoc
+Requires: python3-sphinxcontrib-napoleon
+Requires: python3-sphinxcontrib-versioning
+Requires: python3-duecredit
+Requires: python3-psutil
+Requires: python3-flake8
+Requires: python3-coverage
+Requires: python3-codecov
+Requires: python3-pytest
+Requires: python3-pytest-cov
+Requires: python3-pytest-env
+Requires: python3-coverage
+Requires: python3-codecov
+Requires: python3-pytest
+Requires: python3-pytest-cov
+Requires: python3-pytest-env
+
+%description
+*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
+preprocessing pipeline that is designed to provide an easily accessible,
+state-of-the-art interface that is robust to variations in scan acquisition
+protocols and that requires minimal user input, while providing easily
+interpretable and comprehensive error and output reporting.
+It performs basic processing steps (subject-wise averaging, B1 field correction,
+spatial normalization, segmentation, skullstripping etc.) providing
+outputs that can be easily connected to subsequent tools such as
+`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
+`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
+The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
+a combination of tools from well-known software packages, including
+`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
+`ANTs <https://stnava.github.io/ANTs/>`__,
+`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
+and `AFNI <https://afni.nimh.nih.gov/>`__.
+More information and documentation can be found at
+https://www.nipreps.org/smriprep/.
+Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
+
+%package -n python3-smriprep
+Summary: sMRIPrep (Structural MRI PREProcessing) pipeline
+Provides: python-smriprep
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-smriprep
+*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
+preprocessing pipeline that is designed to provide an easily accessible,
+state-of-the-art interface that is robust to variations in scan acquisition
+protocols and that requires minimal user input, while providing easily
+interpretable and comprehensive error and output reporting.
+It performs basic processing steps (subject-wise averaging, B1 field correction,
+spatial normalization, segmentation, skullstripping etc.) providing
+outputs that can be easily connected to subsequent tools such as
+`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
+`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
+The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
+a combination of tools from well-known software packages, including
+`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
+`ANTs <https://stnava.github.io/ANTs/>`__,
+`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
+and `AFNI <https://afni.nimh.nih.gov/>`__.
+More information and documentation can be found at
+https://www.nipreps.org/smriprep/.
+Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
+
+%package help
+Summary: Development documents and examples for smriprep
+Provides: python3-smriprep-doc
+%description help
+*sMRIPrep* is a structural magnetic resonance imaging (sMRI) data
+preprocessing pipeline that is designed to provide an easily accessible,
+state-of-the-art interface that is robust to variations in scan acquisition
+protocols and that requires minimal user input, while providing easily
+interpretable and comprehensive error and output reporting.
+It performs basic processing steps (subject-wise averaging, B1 field correction,
+spatial normalization, segmentation, skullstripping etc.) providing
+outputs that can be easily connected to subsequent tools such as
+`fMRIPrep <https://github.com/nipreps/fmriprep>`__ or
+`dMRIPrep <https://github.com/nipreps/dmriprep>`__.
+The workflow is based on `Nipype <https://nipype.readthedocs.io>`__ and encompases
+a combination of tools from well-known software packages, including
+`FSL <https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>`__,
+`ANTs <https://stnava.github.io/ANTs/>`__,
+`FreeSurfer <https://surfer.nmr.mgh.harvard.edu/>`__,
+and `AFNI <https://afni.nimh.nih.gov/>`__.
+More information and documentation can be found at
+https://www.nipreps.org/smriprep/.
+Support is provided on `neurostars.org <https://neurostars.org/tags/smriprep>`_.
+
+%prep
+%autosetup -n smriprep-0.11.1
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-smriprep -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed May 17 2023 Python_Bot <Python_Bot@openeuler.org> - 0.11.1-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..8ed2a5c
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+ef593297a611128d38b747496cbbcfc8 smriprep-0.11.1.tar.gz