automatic import of python-spikeinterface

1 files changed, 479 insertions, 0 deletions

diff --git a/python-spikeinterface.spec b/python-spikeinterface.spec
new file mode 100644
index 0000000..3aa6654
--- /dev/null
+++ b/python-spikeinterface.spec
@@ -0,0 +1,479 @@
+%global _empty_manifest_terminate_build 0
+Name:		python-spikeinterface
+Version:	0.97.1
+Release:	1
+Summary:	Python toolkit for analysis, visualization, and comparison of spike sorting output
+License:	MIT License
+URL:		https://pypi.org/project/spikeinterface/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/65/c5/5fa495bf46091ecda52442acb0bf38b35a93b5eeed19f60f263173687add/spikeinterface-0.97.1.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-numpy
+Requires:	python3-neo
+Requires:	python3-joblib
+Requires:	python3-threadpoolctl
+Requires:	python3-tqdm
+Requires:	python3-probeinterface
+Requires:	python3-MEArec
+Requires:	python3-pynwb
+Requires:	python3-pyedflib
+Requires:	python3-lxml
+Requires:	python3-hdf5storage
+Requires:	python3-scipy
+Requires:	python3-ONE-api
+Requires:	python3-ibllib
+Requires:	python3-sonpy
+Requires:	python3-zarr
+Requires:	python3-h5py
+Requires:	python3-pandas
+Requires:	python3-xarray
+Requires:	python3-scipy
+Requires:	python3-scikit-learn
+Requires:	python3-networkx
+Requires:	python3-distinctipy
+Requires:	python3-matplotlib
+Requires:	python3-cuda-python
+Requires:	python3-pytest
+Requires:	python3-pytest-cov
+Requires:	python3-zarr
+Requires:	python3-xarray
+Requires:	python3-huggingface-hub
+Requires:	python3-numpy
+Requires:	python3-numba
+Requires:	python3-hdbscan
+Requires:	python3-sortingview
+Requires:	python3-datalad
+Requires:	python3-tridesclous
+Requires:	python3-pymde
+Requires:	python3-torch
+Requires:	python3-pynndescent
+Requires:	python3-matplotlib
+Requires:	python3-ipympl
+Requires:	python3-ipywidgets
+Requires:	python3-sortingview
+Requires:	python3-figurl-jupyter
+
+%description
+# SpikeInterface: a unified framework for spike sorting
+
+<table>
+<tr>
+  <td>Latest Release</td>
+  <td>
+    <a href="https://pypi.org/project/spikeinterface/">
+    <img src="https://img.shields.io/pypi/v/spikeinterface.svg" alt="latest release" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>Documentation</td>
+  <td>
+    <a href="https://spikeinterface.readthedocs.io/">
+    <img src="https://readthedocs.org/projects/spikeinterface/badge/?version=latest" alt="latest documentation" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>License</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/blob/master/LICENSE">
+    <img src="https://img.shields.io/pypi/l/spikeinterface.svg" alt="license" />
+    </a>
+</td>
+</tr>
+<tr>
+  <td>Build Status</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg">
+    <img src="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg" alt="travis build status" />
+    </a>
+  </td>
+</tr>
+<tr>
+	<td>Codecov</td>
+	<td>
+		<a href="https://codecov.io/github/spikeinterface/spikeinterface">
+		<img src="https://codecov.io/gh/spikeinterface/spikeinterface/branch/master/graphs/badge.svg" alt="codecov" />
+		</a>
+	</td>
+</tr>
+</table>
+
+[![Twitter](https://img.shields.io/badge/@spikeinterface-%231DA1F2.svg?style=for-the-badge&logo=Twitter&logoColor=white)](https://twitter.com/spikeinterface) [![Mastodon](https://img.shields.io/badge/-@spikeinterface-%232B90D9?style=for-the-badge&logo=mastodon&logoColor=white)](https://fosstodon.org/@spikeinterface)
+
+
+SpikeInterface is a Python framework designed to unify preexisting spike sorting technologies into a single code base.
+
+Please [Star](https://github.com/SpikeInterface/spikeinterface/stargazers) the project to support us and [Watch](https://github.com/SpikeInterface/spikeinterface/subscription) to always stay up-to-date!
+
+
+With SpikeInterface, users can:
+
+- read/write many extracellular file formats.
+- pre-process extracellular recordings.
+- run many popular, semi-automatic spike sorters (also in Docker/Singularity containers).
+- post-process sorted datasets.
+- compare and benchmark spike sorting outputs.
+- compute quality metrics to validate and curate spike sorting outputs.
+- visualize recordings and spike sorting outputs in several ways (matplotlib, sortingview, in jupyter)
+- export report and export to phy
+- offer a powerful Qt-based viewer in separate package [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui)
+- have some powerful sorting components to build your own sorter.
+
+
+## Documentation
+
+Detailed documentation for spikeinterface can be found [here](https://spikeinterface.readthedocs.io/en/latest).
+
+Several tutorials to get started can be found in [spiketutorials](https://github.com/SpikeInterface/spiketutorials).
+
+There are also some useful notebooks [on our blog](https://spikeinterface.github.io) that cover advanced benchmarking 
+and sorting components.
+
+You can also have a look at the [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui).
+
+
+## How to install spikeinteface
+
+You can install the new `spikeinterface` version with pip:
+
+```bash
+pip install spikeinterface[full]
+```
+
+The `[full]` option installs all the extra dependencies for all the different sub-modules. 
+
+To install all interactive widget backends, you can use:
+
+```bash
+ pip install spikeinterface[full,widgets]
+```
+
+
+To get the latest updates, you can install `spikeinterface` from sources:
+
+```bash
+git clone https://github.com/SpikeInterface/spikeinterface.git
+cd spikeinterface
+pip install -e .
+cd ..
+```
+
+
+## Citation
+
+If you find SpikeInterface useful in your research, please cite:
+
+```bibtex
+@article{buccino2020spikeinterface,
+  title={SpikeInterface, a unified framework for spike sorting},
+  author={Buccino, Alessio Paolo and Hurwitz, Cole Lincoln and Garcia, Samuel and Magland, Jeremy and Siegle, Joshua H and Hurwitz, Roger and Hennig, Matthias H},
+  journal={Elife},
+  volume={9},
+  pages={e61834},
+  year={2020},
+  publisher={eLife Sciences Publications Limited}
+}
+```
+
+
+%package -n python3-spikeinterface
+Summary:	Python toolkit for analysis, visualization, and comparison of spike sorting output
+Provides:	python-spikeinterface
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-spikeinterface
+# SpikeInterface: a unified framework for spike sorting
+
+<table>
+<tr>
+  <td>Latest Release</td>
+  <td>
+    <a href="https://pypi.org/project/spikeinterface/">
+    <img src="https://img.shields.io/pypi/v/spikeinterface.svg" alt="latest release" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>Documentation</td>
+  <td>
+    <a href="https://spikeinterface.readthedocs.io/">
+    <img src="https://readthedocs.org/projects/spikeinterface/badge/?version=latest" alt="latest documentation" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>License</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/blob/master/LICENSE">
+    <img src="https://img.shields.io/pypi/l/spikeinterface.svg" alt="license" />
+    </a>
+</td>
+</tr>
+<tr>
+  <td>Build Status</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg">
+    <img src="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg" alt="travis build status" />
+    </a>
+  </td>
+</tr>
+<tr>
+	<td>Codecov</td>
+	<td>
+		<a href="https://codecov.io/github/spikeinterface/spikeinterface">
+		<img src="https://codecov.io/gh/spikeinterface/spikeinterface/branch/master/graphs/badge.svg" alt="codecov" />
+		</a>
+	</td>
+</tr>
+</table>
+
+[![Twitter](https://img.shields.io/badge/@spikeinterface-%231DA1F2.svg?style=for-the-badge&logo=Twitter&logoColor=white)](https://twitter.com/spikeinterface) [![Mastodon](https://img.shields.io/badge/-@spikeinterface-%232B90D9?style=for-the-badge&logo=mastodon&logoColor=white)](https://fosstodon.org/@spikeinterface)
+
+
+SpikeInterface is a Python framework designed to unify preexisting spike sorting technologies into a single code base.
+
+Please [Star](https://github.com/SpikeInterface/spikeinterface/stargazers) the project to support us and [Watch](https://github.com/SpikeInterface/spikeinterface/subscription) to always stay up-to-date!
+
+
+With SpikeInterface, users can:
+
+- read/write many extracellular file formats.
+- pre-process extracellular recordings.
+- run many popular, semi-automatic spike sorters (also in Docker/Singularity containers).
+- post-process sorted datasets.
+- compare and benchmark spike sorting outputs.
+- compute quality metrics to validate and curate spike sorting outputs.
+- visualize recordings and spike sorting outputs in several ways (matplotlib, sortingview, in jupyter)
+- export report and export to phy
+- offer a powerful Qt-based viewer in separate package [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui)
+- have some powerful sorting components to build your own sorter.
+
+
+## Documentation
+
+Detailed documentation for spikeinterface can be found [here](https://spikeinterface.readthedocs.io/en/latest).
+
+Several tutorials to get started can be found in [spiketutorials](https://github.com/SpikeInterface/spiketutorials).
+
+There are also some useful notebooks [on our blog](https://spikeinterface.github.io) that cover advanced benchmarking 
+and sorting components.
+
+You can also have a look at the [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui).
+
+
+## How to install spikeinteface
+
+You can install the new `spikeinterface` version with pip:
+
+```bash
+pip install spikeinterface[full]
+```
+
+The `[full]` option installs all the extra dependencies for all the different sub-modules. 
+
+To install all interactive widget backends, you can use:
+
+```bash
+ pip install spikeinterface[full,widgets]
+```
+
+
+To get the latest updates, you can install `spikeinterface` from sources:
+
+```bash
+git clone https://github.com/SpikeInterface/spikeinterface.git
+cd spikeinterface
+pip install -e .
+cd ..
+```
+
+
+## Citation
+
+If you find SpikeInterface useful in your research, please cite:
+
+```bibtex
+@article{buccino2020spikeinterface,
+  title={SpikeInterface, a unified framework for spike sorting},
+  author={Buccino, Alessio Paolo and Hurwitz, Cole Lincoln and Garcia, Samuel and Magland, Jeremy and Siegle, Joshua H and Hurwitz, Roger and Hennig, Matthias H},
+  journal={Elife},
+  volume={9},
+  pages={e61834},
+  year={2020},
+  publisher={eLife Sciences Publications Limited}
+}
+```
+
+
+%package help
+Summary:	Development documents and examples for spikeinterface
+Provides:	python3-spikeinterface-doc
+%description help
+# SpikeInterface: a unified framework for spike sorting
+
+<table>
+<tr>
+  <td>Latest Release</td>
+  <td>
+    <a href="https://pypi.org/project/spikeinterface/">
+    <img src="https://img.shields.io/pypi/v/spikeinterface.svg" alt="latest release" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>Documentation</td>
+  <td>
+    <a href="https://spikeinterface.readthedocs.io/">
+    <img src="https://readthedocs.org/projects/spikeinterface/badge/?version=latest" alt="latest documentation" />
+    </a>
+  </td>
+</tr>
+<tr>
+  <td>License</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/blob/master/LICENSE">
+    <img src="https://img.shields.io/pypi/l/spikeinterface.svg" alt="license" />
+    </a>
+</td>
+</tr>
+<tr>
+  <td>Build Status</td>
+  <td>
+    <a href="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg">
+    <img src="https://github.com/SpikeInterface/spikeinterface/actions/workflows/full-test.yml/badge.svg" alt="travis build status" />
+    </a>
+  </td>
+</tr>
+<tr>
+	<td>Codecov</td>
+	<td>
+		<a href="https://codecov.io/github/spikeinterface/spikeinterface">
+		<img src="https://codecov.io/gh/spikeinterface/spikeinterface/branch/master/graphs/badge.svg" alt="codecov" />
+		</a>
+	</td>
+</tr>
+</table>
+
+[![Twitter](https://img.shields.io/badge/@spikeinterface-%231DA1F2.svg?style=for-the-badge&logo=Twitter&logoColor=white)](https://twitter.com/spikeinterface) [![Mastodon](https://img.shields.io/badge/-@spikeinterface-%232B90D9?style=for-the-badge&logo=mastodon&logoColor=white)](https://fosstodon.org/@spikeinterface)
+
+
+SpikeInterface is a Python framework designed to unify preexisting spike sorting technologies into a single code base.
+
+Please [Star](https://github.com/SpikeInterface/spikeinterface/stargazers) the project to support us and [Watch](https://github.com/SpikeInterface/spikeinterface/subscription) to always stay up-to-date!
+
+
+With SpikeInterface, users can:
+
+- read/write many extracellular file formats.
+- pre-process extracellular recordings.
+- run many popular, semi-automatic spike sorters (also in Docker/Singularity containers).
+- post-process sorted datasets.
+- compare and benchmark spike sorting outputs.
+- compute quality metrics to validate and curate spike sorting outputs.
+- visualize recordings and spike sorting outputs in several ways (matplotlib, sortingview, in jupyter)
+- export report and export to phy
+- offer a powerful Qt-based viewer in separate package [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui)
+- have some powerful sorting components to build your own sorter.
+
+
+## Documentation
+
+Detailed documentation for spikeinterface can be found [here](https://spikeinterface.readthedocs.io/en/latest).
+
+Several tutorials to get started can be found in [spiketutorials](https://github.com/SpikeInterface/spiketutorials).
+
+There are also some useful notebooks [on our blog](https://spikeinterface.github.io) that cover advanced benchmarking 
+and sorting components.
+
+You can also have a look at the [spikeinterface-gui](https://github.com/SpikeInterface/spikeinterface-gui).
+
+
+## How to install spikeinteface
+
+You can install the new `spikeinterface` version with pip:
+
+```bash
+pip install spikeinterface[full]
+```
+
+The `[full]` option installs all the extra dependencies for all the different sub-modules. 
+
+To install all interactive widget backends, you can use:
+
+```bash
+ pip install spikeinterface[full,widgets]
+```
+
+
+To get the latest updates, you can install `spikeinterface` from sources:
+
+```bash
+git clone https://github.com/SpikeInterface/spikeinterface.git
+cd spikeinterface
+pip install -e .
+cd ..
+```
+
+
+## Citation
+
+If you find SpikeInterface useful in your research, please cite:
+
+```bibtex
+@article{buccino2020spikeinterface,
+  title={SpikeInterface, a unified framework for spike sorting},
+  author={Buccino, Alessio Paolo and Hurwitz, Cole Lincoln and Garcia, Samuel and Magland, Jeremy and Siegle, Joshua H and Hurwitz, Roger and Hennig, Matthias H},
+  journal={Elife},
+  volume={9},
+  pages={e61834},
+  year={2020},
+  publisher={eLife Sciences Publications Limited}
+}
+```
+
+
+%prep
+%autosetup -n spikeinterface-0.97.1
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-spikeinterface -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.97.1-1
+- Package Spec generated