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@@ -0,0 +1 @@ +/tofu-1.7.0.tar.gz diff --git a/python-tofu.spec b/python-tofu.spec new file mode 100644 index 0000000..3ed1119 --- /dev/null +++ b/python-tofu.spec @@ -0,0 +1,222 @@ +%global _empty_manifest_terminate_build 0 +Name: python-tofu +Version: 1.7.0 +Release: 1 +Summary: A python library for Tomography for Fusion +License: MIT +URL: https://github.com/ToFuProject/tofu +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/47/fb/82b1be64a7651d9fde4d408149ff4fb32d4dd2bfea641ee67d209e8c8e22/tofu-1.7.0.tar.gz +BuildArch: noarch + + +%description +**tofu** stands for **To**mography for **Fu**sion, it is an IMAS-compatible open-source machine-independent python library. +tofu tries to take an active part in the plasma community open-source python environment, like [PlasmaPy](https://github.com/PlasmaPy/PlasmaPy), with which some degree of interoperability is being implemented. +It aims at providing the **fusion** and **plasma** community with an object-oriented, transparent and documented tool for designing **tomography diagnostics**, computing **synthetic signal** (direct problem) as well as **tomographic inversions** (inverse problem). It gives access to a full 3D description of the diagnostic geometry, thus reducing the impact of geometrical approximations on the direct and, most importantly, on the inverse problem. +**tofu** is relevant for all diagnostics integrating, in a finitie field of view or along a set of lines of sight, a quantity (scalar or vector) for which the plasma can be considered transparent (e.g.: light in the visible, UV, soft and hard X-ray ranges, or electron density for interferometers). +**tofu** is **command-line oriented**, for maximum flexibility and scriptability. +The absence of a GUI is compensated by built-in one-liners for interactive plots. +It has a sphinx-generated [documentation](https://tofuproject.github.io/tofu/index.html), and the code itself is hosted on [GitHub](https://github.com/ToFuProject/tofu). +## Examples Gallery +Here are some examples of what **tofu** can do +#### Built-in one-liners for interactive camera geometry visualization +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_touch.png" width="600" alt="Built-in one-liners for interactive camera geometry visualization"/> +</p> +#### ...both for 1D and 2D cameras, including the basics for multiple reflections handling +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS2D_touch_refelect.png" width="600" alt="...both for 1D and 2D cameras, including the basics for multiple reflections handling"/> +</p> +#### Built-in plotting of sinograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_sino.png" width="600" alt="Built-in plotting of sinograms"/> +</p> +#### Basic magnetic field line tracing +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/MagfieldLines.png" width="600" alt="Basic magnetic field line tracing"/> +</p> +#### Multiple 1d profiles interactive plotting +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Multiple 1d profiles interactive plotting"/> +</p> +#### Built-in basic data treatment and interactive plotting: svd and spectrograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Built-in basic data treatment and interactive plotting: svd and spectrograms"/> +</p> +**tofu** provides the user with a series of python classes for creating, handling and visualizing a diagnostic geometry, meshes and basis functions, +geometry matrices, pre-treating experimental data and computing tomographic inversions. +Each one of these main tasks is accomplished by a dedicated module in the larger tofu package. +The geometry module is sufficient for diagnostic designing and for a synthetic diagnostic approach (i.e.: computing the integrated signal from a simulated 2D or 3D emissivity). +This geometry module allows in particular: +* To handle linear and toroidal vaccum vessels +* To define apertures and detectors as planar polygons of arbitrary shapes +* To automatically compute the full Volume of Sight (VOS) in 3D of each {detector+aperture(s)} set +* To discretise the VOS for a numerical 3D integration of a simulated emissivity in order to compute the associated signal +It is in this geometrical sense that tofu enables a synthetic diagnostic approach, it does not provide the tools for simulating the emissivity itself (that should be an input, provided by another code). +## IMAS-compatibility +IMAS is a standardized data structure, it comes as an extra layer on the database of any Tokamak to provide a machine-independent way of accessing scientific data. +tofu has built-in advanced classes for handling the interface with IMAS, hold in the imas2tofu sub-package. +It pre-supposes, of course, that IMAS is installed and operational next to your python install, but tofu does not require IMAS to run in general. +If IMAS is not available, tofu will simply display a warning stating that the imas2tofu sub-package is not usable. +tofu can thus easily load and handle multiple IDSs (IMAS data structure units) and provide command-line tools for exporting IMAS data to other general tofu classes (e.g.: Cameras, Plasma2D...) and for interactive plotting. +All tofu objects have methods to facailitate in-python-console introspection, the ``__repr__`` method is overloaded to display relevant information, an dthis is widely used to explore the data loaded from IMAS. +Do you want to use **tofu** on IMAS and don't know where to start? + +%package -n python3-tofu +Summary: A python library for Tomography for Fusion +Provides: python-tofu +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-tofu +**tofu** stands for **To**mography for **Fu**sion, it is an IMAS-compatible open-source machine-independent python library. +tofu tries to take an active part in the plasma community open-source python environment, like [PlasmaPy](https://github.com/PlasmaPy/PlasmaPy), with which some degree of interoperability is being implemented. +It aims at providing the **fusion** and **plasma** community with an object-oriented, transparent and documented tool for designing **tomography diagnostics**, computing **synthetic signal** (direct problem) as well as **tomographic inversions** (inverse problem). It gives access to a full 3D description of the diagnostic geometry, thus reducing the impact of geometrical approximations on the direct and, most importantly, on the inverse problem. +**tofu** is relevant for all diagnostics integrating, in a finitie field of view or along a set of lines of sight, a quantity (scalar or vector) for which the plasma can be considered transparent (e.g.: light in the visible, UV, soft and hard X-ray ranges, or electron density for interferometers). +**tofu** is **command-line oriented**, for maximum flexibility and scriptability. +The absence of a GUI is compensated by built-in one-liners for interactive plots. +It has a sphinx-generated [documentation](https://tofuproject.github.io/tofu/index.html), and the code itself is hosted on [GitHub](https://github.com/ToFuProject/tofu). +## Examples Gallery +Here are some examples of what **tofu** can do +#### Built-in one-liners for interactive camera geometry visualization +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_touch.png" width="600" alt="Built-in one-liners for interactive camera geometry visualization"/> +</p> +#### ...both for 1D and 2D cameras, including the basics for multiple reflections handling +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS2D_touch_refelect.png" width="600" alt="...both for 1D and 2D cameras, including the basics for multiple reflections handling"/> +</p> +#### Built-in plotting of sinograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_sino.png" width="600" alt="Built-in plotting of sinograms"/> +</p> +#### Basic magnetic field line tracing +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/MagfieldLines.png" width="600" alt="Basic magnetic field line tracing"/> +</p> +#### Multiple 1d profiles interactive plotting +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Multiple 1d profiles interactive plotting"/> +</p> +#### Built-in basic data treatment and interactive plotting: svd and spectrograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Built-in basic data treatment and interactive plotting: svd and spectrograms"/> +</p> +**tofu** provides the user with a series of python classes for creating, handling and visualizing a diagnostic geometry, meshes and basis functions, +geometry matrices, pre-treating experimental data and computing tomographic inversions. +Each one of these main tasks is accomplished by a dedicated module in the larger tofu package. +The geometry module is sufficient for diagnostic designing and for a synthetic diagnostic approach (i.e.: computing the integrated signal from a simulated 2D or 3D emissivity). +This geometry module allows in particular: +* To handle linear and toroidal vaccum vessels +* To define apertures and detectors as planar polygons of arbitrary shapes +* To automatically compute the full Volume of Sight (VOS) in 3D of each {detector+aperture(s)} set +* To discretise the VOS for a numerical 3D integration of a simulated emissivity in order to compute the associated signal +It is in this geometrical sense that tofu enables a synthetic diagnostic approach, it does not provide the tools for simulating the emissivity itself (that should be an input, provided by another code). +## IMAS-compatibility +IMAS is a standardized data structure, it comes as an extra layer on the database of any Tokamak to provide a machine-independent way of accessing scientific data. +tofu has built-in advanced classes for handling the interface with IMAS, hold in the imas2tofu sub-package. +It pre-supposes, of course, that IMAS is installed and operational next to your python install, but tofu does not require IMAS to run in general. +If IMAS is not available, tofu will simply display a warning stating that the imas2tofu sub-package is not usable. +tofu can thus easily load and handle multiple IDSs (IMAS data structure units) and provide command-line tools for exporting IMAS data to other general tofu classes (e.g.: Cameras, Plasma2D...) and for interactive plotting. +All tofu objects have methods to facailitate in-python-console introspection, the ``__repr__`` method is overloaded to display relevant information, an dthis is widely used to explore the data loaded from IMAS. +Do you want to use **tofu** on IMAS and don't know where to start? + +%package help +Summary: Development documents and examples for tofu +Provides: python3-tofu-doc +%description help +**tofu** stands for **To**mography for **Fu**sion, it is an IMAS-compatible open-source machine-independent python library. +tofu tries to take an active part in the plasma community open-source python environment, like [PlasmaPy](https://github.com/PlasmaPy/PlasmaPy), with which some degree of interoperability is being implemented. +It aims at providing the **fusion** and **plasma** community with an object-oriented, transparent and documented tool for designing **tomography diagnostics**, computing **synthetic signal** (direct problem) as well as **tomographic inversions** (inverse problem). It gives access to a full 3D description of the diagnostic geometry, thus reducing the impact of geometrical approximations on the direct and, most importantly, on the inverse problem. +**tofu** is relevant for all diagnostics integrating, in a finitie field of view or along a set of lines of sight, a quantity (scalar or vector) for which the plasma can be considered transparent (e.g.: light in the visible, UV, soft and hard X-ray ranges, or electron density for interferometers). +**tofu** is **command-line oriented**, for maximum flexibility and scriptability. +The absence of a GUI is compensated by built-in one-liners for interactive plots. +It has a sphinx-generated [documentation](https://tofuproject.github.io/tofu/index.html), and the code itself is hosted on [GitHub](https://github.com/ToFuProject/tofu). +## Examples Gallery +Here are some examples of what **tofu** can do +#### Built-in one-liners for interactive camera geometry visualization +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_touch.png" width="600" alt="Built-in one-liners for interactive camera geometry visualization"/> +</p> +#### ...both for 1D and 2D cameras, including the basics for multiple reflections handling +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS2D_touch_refelect.png" width="600" alt="...both for 1D and 2D cameras, including the basics for multiple reflections handling"/> +</p> +#### Built-in plotting of sinograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/CamLOS1D_sino.png" width="600" alt="Built-in plotting of sinograms"/> +</p> +#### Basic magnetic field line tracing +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/MagfieldLines.png" width="600" alt="Basic magnetic field line tracing"/> +</p> +#### Multiple 1d profiles interactive plotting +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Multiple 1d profiles interactive plotting"/> +</p> +#### Built-in basic data treatment and interactive plotting: svd and spectrograms +<p align="center"> +<img align="middle" src="https://github.com/ToFuProject/tofu/blob/master/README_figures/Plasma2D_1dneTe.png" width="600" alt="Built-in basic data treatment and interactive plotting: svd and spectrograms"/> +</p> +**tofu** provides the user with a series of python classes for creating, handling and visualizing a diagnostic geometry, meshes and basis functions, +geometry matrices, pre-treating experimental data and computing tomographic inversions. +Each one of these main tasks is accomplished by a dedicated module in the larger tofu package. +The geometry module is sufficient for diagnostic designing and for a synthetic diagnostic approach (i.e.: computing the integrated signal from a simulated 2D or 3D emissivity). +This geometry module allows in particular: +* To handle linear and toroidal vaccum vessels +* To define apertures and detectors as planar polygons of arbitrary shapes +* To automatically compute the full Volume of Sight (VOS) in 3D of each {detector+aperture(s)} set +* To discretise the VOS for a numerical 3D integration of a simulated emissivity in order to compute the associated signal +It is in this geometrical sense that tofu enables a synthetic diagnostic approach, it does not provide the tools for simulating the emissivity itself (that should be an input, provided by another code). +## IMAS-compatibility +IMAS is a standardized data structure, it comes as an extra layer on the database of any Tokamak to provide a machine-independent way of accessing scientific data. +tofu has built-in advanced classes for handling the interface with IMAS, hold in the imas2tofu sub-package. +It pre-supposes, of course, that IMAS is installed and operational next to your python install, but tofu does not require IMAS to run in general. +If IMAS is not available, tofu will simply display a warning stating that the imas2tofu sub-package is not usable. +tofu can thus easily load and handle multiple IDSs (IMAS data structure units) and provide command-line tools for exporting IMAS data to other general tofu classes (e.g.: Cameras, Plasma2D...) and for interactive plotting. +All tofu objects have methods to facailitate in-python-console introspection, the ``__repr__`` method is overloaded to display relevant information, an dthis is widely used to explore the data loaded from IMAS. +Do you want to use **tofu** on IMAS and don't know where to start? + +%prep +%autosetup -n tofu-1.7.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-tofu -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Thu May 18 2023 Python_Bot <Python_Bot@openeuler.org> - 1.7.0-1 +- Package Spec generated @@ -0,0 +1 @@ +9302f81ee8c446aeccee6a32fc5c6f42 tofu-1.7.0.tar.gz |