From 2bb60df234a879f2a0fb4c104f9bec9667221589 Mon Sep 17 00:00:00 2001 From: CoprDistGit Date: Fri, 5 May 2023 05:53:59 +0000 Subject: automatic import of python-trisicell --- .gitignore | 1 + python-trisicell.spec | 133 ++++++++++++++++++++++++++++++++++++++++++++++++++ sources | 1 + 3 files changed, 135 insertions(+) create mode 100644 python-trisicell.spec create mode 100644 sources diff --git a/.gitignore b/.gitignore index e69de29..fd1b3e1 100644 --- a/.gitignore +++ b/.gitignore @@ -0,0 +1 @@ +/trisicell-0.2.1.tar.gz diff --git a/python-trisicell.spec b/python-trisicell.spec new file mode 100644 index 0000000..dc7f623 --- /dev/null +++ b/python-trisicell.spec @@ -0,0 +1,133 @@ +%global _empty_manifest_terminate_build 0 +Name: python-trisicell +Version: 0.2.1 +Release: 1 +Summary: please add a summary manually as the author left a blank one +License: BSD +URL: https://github.com/faridrashidi/trisicell +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/38/bc/fc01229c47cd5bd5c5e92134b793f8846fb44fe04654a3ee296125d41973/trisicell-0.2.1.tar.gz +BuildArch: noarch + +Requires: python3-anndata +Requires: python3-apted +Requires: python3-biopython +Requires: python3-click +Requires: python3-cython +Requires: python3-cyvcf2 +Requires: python3-ete3 +Requires: python3-ipython +Requires: python3-joblib +Requires: python3-matplotlib +Requires: python3-mudata +Requires: python3-natsort +Requires: python3-networkx +Requires: python3-numba +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-pybnb +Requires: python3-pydot +Requires: python3-sat +Requires: python3-pyyaml +Requires: python3-scanpy +Requires: python3-scikit-learn +Requires: python3-scipy +Requires: python3-seaborn +Requires: python3-termcolor +Requires: python3-tqdm +Requires: python3-black +Requires: python3-pre-commit +Requires: python3-isort +Requires: python3-pytest-cov +Requires: python3-memory-profiler +Requires: python3-nbsphinx +Requires: python3-pyenchant +Requires: python3-pypandoc +Requires: python3-requests +Requires: python3-sphinx +Requires: python3-sphinx-autodoc-annotation +Requires: python3-sphinx-autodoc-typehints +Requires: python3-sphinx-click +Requires: python3-sphinx-paramlinks +Requires: python3-sphinx-copybutton +Requires: python3-sphinx-gallery +Requires: python3-sphinx-last-updated-by-git +Requires: python3-sphinx-rtd-theme +Requires: python3-sphinxcontrib-bibtex +Requires: python3-sphinxcontrib-spelling + +%description +Trisicell (**Tri**\ ple-toolkit for **si**\ ngle-\ **cell** intratumor +heterogeneity inference), pronounced as "tricycle", is a new computational +toolkit for scalable intratumor heterogeneity inference and evaluation from +single-cell RNA, as well as single-cell genome or exome, sequencing data. +Trisicell utilizes expressed SNVs and Indels to infer evolutionary +relationships between genomic alterations and the cells that harbor them. + +%package -n python3-trisicell +Summary: please add a summary manually as the author left a blank one +Provides: python-trisicell +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-trisicell +Trisicell (**Tri**\ ple-toolkit for **si**\ ngle-\ **cell** intratumor +heterogeneity inference), pronounced as "tricycle", is a new computational +toolkit for scalable intratumor heterogeneity inference and evaluation from +single-cell RNA, as well as single-cell genome or exome, sequencing data. +Trisicell utilizes expressed SNVs and Indels to infer evolutionary +relationships between genomic alterations and the cells that harbor them. + +%package help +Summary: Development documents and examples for trisicell +Provides: python3-trisicell-doc +%description help +Trisicell (**Tri**\ ple-toolkit for **si**\ ngle-\ **cell** intratumor +heterogeneity inference), pronounced as "tricycle", is a new computational +toolkit for scalable intratumor heterogeneity inference and evaluation from +single-cell RNA, as well as single-cell genome or exome, sequencing data. +Trisicell utilizes expressed SNVs and Indels to infer evolutionary +relationships between genomic alterations and the cells that harbor them. + +%prep +%autosetup -n trisicell-0.2.1 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-trisicell -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot - 0.2.1-1 +- Package Spec generated diff --git a/sources b/sources new file mode 100644 index 0000000..5e9b418 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +ea5eba0b0552240962aad1eb98650609 trisicell-0.2.1.tar.gz -- cgit v1.2.3