From b12b7f9372424f5271a838c95605d9946c7ea1fb Mon Sep 17 00:00:00 2001 From: "Benjamin A. Beasley" <code@musicinmybrain.net> Date: Thu, 4 Nov 2021 20:57:44 -0400 Subject: [PATCH] Replace unittest.TestCase.assert_ in Python tests MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This private method goes away in Python 3.11. This commit applies a strict mechanical replacement with unittest.TestCase.assertTrue(). This approach is not ideal—there is often a semantically better public method, e.g. assertEqual(a, b) instead of assertTrue(a == b)—but it does ensure we do not accidentally change the *meaning* of a test, especially distinctions (or lack thereof) between False and None. --- .../annotation/TestAnnotationCopyAndClone.py | 120 +- .../python/test/annotation/TestCVTerms.py | 46 +- .../test/annotation/TestCVTerms_newSetters.py | 94 +- .../test/annotation/TestDate_newSetters.py | 158 +-- .../test/annotation/TestL3ModelHistory.py | 352 ++--- .../annotation/TestModelCreator_newSetters.py | 72 +- .../test/annotation/TestModelHistory.py | 264 ++-- .../annotation/TestModelHistory_newSetters.py | 52 +- .../test/annotation/TestRDFAnnotation.py | 320 ++--- .../test/annotation/TestRDFAnnotation2.py | 78 +- .../test/annotation/TestRDFAnnotationC.py | 240 ++-- .../python/test/annotation/TestValidation.py | 20 +- src/bindings/python/test/math/TestASTNode.py | 974 ++++++------- .../python/test/math/TestL3FormulaParserC.py | 1258 ++++++++--------- .../python/test/math/TestMathReadFromFile1.py | 64 +- .../python/test/math/TestMathReadFromFile2.py | 98 +- .../python/test/math/TestReadMathML.py | 486 +++---- .../python/test/math/TestValidASTNode.py | 38 +- .../python/test/sbml/TestAlgebraicRule.py | 48 +- src/bindings/python/test/sbml/TestAncestor.py | 728 +++++----- .../python/test/sbml/TestAssignmentRule.py | 60 +- .../python/test/sbml/TestCompartment.py | 100 +- .../python/test/sbml/TestCompartmentType.py | 38 +- .../sbml/TestCompartmentType_newSetters.py | 18 +- .../test/sbml/TestCompartmentVolumeRule.py | 18 +- .../test/sbml/TestCompartment_newSetters.py | 108 +- .../python/test/sbml/TestConsistencyChecks.py | 30 +- .../python/test/sbml/TestConstraint.py | 36 +- .../test/sbml/TestConstraint_newSetters.py | 22 +- .../python/test/sbml/TestCopyAndClone.py | 502 +++---- src/bindings/python/test/sbml/TestDelay.py | 50 +- src/bindings/python/test/sbml/TestEvent.py | 76 +- .../python/test/sbml/TestEventAssignment.py | 48 +- .../sbml/TestEventAssignment_newSetters.py | 18 +- .../python/test/sbml/TestEvent_newSetters.py | 90 +- .../test/sbml/TestFunctionDefinition.py | 98 +- .../sbml/TestFunctionDefinition_newSetters.py | 28 +- .../test/sbml/TestGetMultipleObjects.py | 244 ++-- .../python/test/sbml/TestInitialAssignment.py | 48 +- .../sbml/TestInitialAssignment_newSetters.py | 18 +- .../sbml/TestInternalConsistencyChecks.py | 422 +++--- .../python/test/sbml/TestKineticLaw.py | 92 +- .../test/sbml/TestKineticLaw_newSetters.py | 72 +- .../python/test/sbml/TestL3Compartment.py | 82 +- src/bindings/python/test/sbml/TestL3Event.py | 62 +- .../python/test/sbml/TestL3KineticLaw.py | 48 +- .../python/test/sbml/TestL3LocalParameter.py | 50 +- src/bindings/python/test/sbml/TestL3Model.py | 80 +- .../python/test/sbml/TestL3Parameter.py | 64 +- .../python/test/sbml/TestL3Reaction.py | 76 +- .../python/test/sbml/TestL3Species.py | 146 +- .../test/sbml/TestL3SpeciesReference.py | 64 +- .../python/test/sbml/TestL3Trigger.py | 54 +- src/bindings/python/test/sbml/TestL3Unit.py | 46 +- src/bindings/python/test/sbml/TestListOf.py | 36 +- src/bindings/python/test/sbml/TestModel.py | 540 +++---- .../python/test/sbml/TestModel_newSetters.py | 442 +++--- .../test/sbml/TestModifierSpeciesReference.py | 30 +- .../python/test/sbml/TestParameter.py | 44 +- .../python/test/sbml/TestParameterRule.py | 24 +- .../test/sbml/TestParameter_newSetters.py | 46 +- src/bindings/python/test/sbml/TestPriority.py | 50 +- src/bindings/python/test/sbml/TestRateRule.py | 36 +- src/bindings/python/test/sbml/TestReaction.py | 128 +- .../test/sbml/TestReaction_newSetters.py | 114 +- .../python/test/sbml/TestReadFromFile1.py | 164 +-- .../python/test/sbml/TestReadFromFile2.py | 192 +-- .../python/test/sbml/TestReadFromFile3.py | 162 +-- .../python/test/sbml/TestReadFromFile4.py | 42 +- .../python/test/sbml/TestReadFromFile5.py | 182 +-- .../python/test/sbml/TestReadFromFile6.py | 162 +-- .../python/test/sbml/TestReadFromFile7.py | 254 ++-- .../python/test/sbml/TestReadFromFile8.py | 32 +- .../python/test/sbml/TestReadFromFile9.py | 158 +-- src/bindings/python/test/sbml/TestReadSBML.py | 586 ++++---- src/bindings/python/test/sbml/TestRule.py | 24 +- .../python/test/sbml/TestRule_newSetters.py | 42 +- .../test/sbml/TestSBMLConstructorException.py | 54 +- .../python/test/sbml/TestSBMLConvert.py | 262 ++-- .../python/test/sbml/TestSBMLConvertStrict.py | 86 +- .../python/test/sbml/TestSBMLDocument.py | 88 +- .../python/test/sbml/TestSBMLError.py | 68 +- .../python/test/sbml/TestSBMLNamespaces.py | 110 +- .../python/test/sbml/TestSBMLParentObject.py | 400 +++--- src/bindings/python/test/sbml/TestSBase.py | 528 +++---- .../python/test/sbml/TestSBase_newSetters.py | 612 ++++---- src/bindings/python/test/sbml/TestSpecies.py | 74 +- .../test/sbml/TestSpeciesConcentrationRule.py | 18 +- .../python/test/sbml/TestSpeciesReference.py | 46 +- .../sbml/TestSpeciesReference_newSetters.py | 78 +- .../python/test/sbml/TestSpeciesType.py | 38 +- .../test/sbml/TestSpeciesType_newSetters.py | 24 +- .../test/sbml/TestSpecies_newSetters.py | 146 +- .../python/test/sbml/TestStoichiometryMath.py | 50 +- .../python/test/sbml/TestSyntaxChecker.py | 34 +- src/bindings/python/test/sbml/TestTrigger.py | 50 +- src/bindings/python/test/sbml/TestUnit.py | 48 +- .../python/test/sbml/TestUnitDefinition.py | 88 +- .../sbml/TestUnitDefinition_newSetters.py | 46 +- src/bindings/python/test/sbml/TestUnitKind.py | 152 +- .../python/test/sbml/TestUnit_newSetters.py | 46 +- .../python/test/sbml/TestWriteL3SBML.py | 18 +- .../python/test/sbml/TestWriteSBML.py | 18 +- .../python/test/xml/TestXMLAttributes.py | 88 +- .../python/test/xml/TestXMLAttributesC.py | 232 +-- .../python/test/xml/TestXMLCopyAndClone.py | 264 ++-- src/bindings/python/test/xml/TestXMLError.py | 62 +- src/bindings/python/test/xml/TestXMLErrorC.py | 24 +- .../python/test/xml/TestXMLNamespaces.py | 176 +-- src/bindings/python/test/xml/TestXMLNode.py | 798 +++++------ .../python/test/xml/TestXMLNode_newSetters.py | 116 +- .../python/test/xml/TestXMLOutputStream.py | 22 +- src/bindings/python/test/xml/TestXMLToken.py | 450 +++--- .../test/xml/TestXMLToken_newSetters.py | 202 +-- src/bindings/python/test/xml/TestXMLTriple.py | 24 +- 115 files changed, 8824 insertions(+), 8824 deletions(-) diff --git a/src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py b/src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py index cba7ab00a0..0318077b5a 100644 --- a/src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py +++ b/src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py @@ -40,14 +40,14 @@ class TestAnnotationCopyAndClone(unittest.TestCase): def test_CVTerm_assignmentOperator(self): CVTerm1 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) CVTerm1.addResource("http://www.geneontology.org/#GO:0005892") - self.assert_( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm1.getResources().getLength() == 1 ) - self.assert_( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm1.getResources().getLength() == 1 ) + self.assertTrue( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = libsbml.CVTerm() CVTerm2 = CVTerm1 - self.assert_( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm2.getResources().getLength() == 1 ) - self.assert_( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm2.getResources().getLength() == 1 ) + self.assertTrue( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = None CVTerm1 = None pass @@ -55,13 +55,13 @@ def test_CVTerm_assignmentOperator(self): def test_CVTerm_clone(self): CVTerm1 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) CVTerm1.addResource("http://www.geneontology.org/#GO:0005892") - self.assert_( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm1.getResources().getLength() == 1 ) - self.assert_( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm1.getResources().getLength() == 1 ) + self.assertTrue( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = CVTerm1.clone() - self.assert_( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm2.getResources().getLength() == 1 ) - self.assert_( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm2.getResources().getLength() == 1 ) + self.assertTrue( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = None CVTerm1 = None pass @@ -69,47 +69,47 @@ def test_CVTerm_clone(self): def test_CVTerm_copyConstructor(self): CVTerm1 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) CVTerm1.addResource("http://www.geneontology.org/#GO:0005892") - self.assert_( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm1.getResources().getLength() == 1 ) - self.assert_( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm1.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm1.getResources().getLength() == 1 ) + self.assertTrue( CVTerm1.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = libsbml.CVTerm(CVTerm1) - self.assert_( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( CVTerm2.getResources().getLength() == 1 ) - self.assert_( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) + self.assertTrue( CVTerm2.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( CVTerm2.getResources().getLength() == 1 ) + self.assertTrue( CVTerm2.getResources().getValue(0) == "http://www.geneontology.org/#GO:0005892" ) CVTerm2 = None CVTerm1 = None pass def test_Date_assignmentOperator(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getSecond() == 45 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getSecond() == 45 ) date2 = libsbml.Date() date2 = date - self.assert_( date2.getMonth() == 12 ) - self.assert_( date2.getSecond() == 45 ) + self.assertTrue( date2.getMonth() == 12 ) + self.assertTrue( date2.getSecond() == 45 ) date2 = None date = None pass def test_Date_clone(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getSecond() == 45 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getSecond() == 45 ) date2 = date.clone() - self.assert_( date2.getMonth() == 12 ) - self.assert_( date2.getSecond() == 45 ) + self.assertTrue( date2.getMonth() == 12 ) + self.assertTrue( date2.getSecond() == 45 ) date2 = None date = None pass def test_Date_copyConstructor(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getSecond() == 45 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getSecond() == 45 ) date2 = libsbml.Date(date) - self.assert_( date2.getMonth() == 12 ) - self.assert_( date2.getSecond() == 45 ) + self.assertTrue( date2.getMonth() == 12 ) + self.assertTrue( date2.getSecond() == 45 ) date2 = None date = None pass @@ -118,12 +118,12 @@ def test_ModelCreator_assignmentOperator(self): mc = libsbml.ModelCreator() mc.setFamilyName("Keating") mc.setEmail("sbml-team@caltech.edu") - self.assert_( mc.getFamilyName() == "Keating" ) - self.assert_( mc.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc.getFamilyName() == "Keating" ) + self.assertTrue( mc.getEmail() == "sbml-team@caltech.edu" ) mc2 = libsbml.ModelCreator() mc2 = mc - self.assert_( mc2.getFamilyName() == "Keating" ) - self.assert_( mc2.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc2.getFamilyName() == "Keating" ) + self.assertTrue( mc2.getEmail() == "sbml-team@caltech.edu" ) mc2 = None mc = None pass @@ -132,11 +132,11 @@ def test_ModelCreator_clone(self): mc = libsbml.ModelCreator() mc.setFamilyName("Keating") mc.setEmail("sbml-team@caltech.edu") - self.assert_( mc.getFamilyName() == "Keating" ) - self.assert_( mc.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc.getFamilyName() == "Keating" ) + self.assertTrue( mc.getEmail() == "sbml-team@caltech.edu" ) mc2 = mc.clone() - self.assert_( mc2.getFamilyName() == "Keating" ) - self.assert_( mc2.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc2.getFamilyName() == "Keating" ) + self.assertTrue( mc2.getEmail() == "sbml-team@caltech.edu" ) mc2 = None mc = None pass @@ -145,11 +145,11 @@ def test_ModelCreator_copyConstructor(self): mc = libsbml.ModelCreator() mc.setFamilyName("Keating") mc.setEmail("sbml-team@caltech.edu") - self.assert_( mc.getFamilyName() == "Keating" ) - self.assert_( mc.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc.getFamilyName() == "Keating" ) + self.assertTrue( mc.getEmail() == "sbml-team@caltech.edu" ) mc2 = libsbml.ModelCreator(mc) - self.assert_( mc2.getFamilyName() == "Keating" ) - self.assert_( mc2.getEmail() == "sbml-team@caltech.edu" ) + self.assertTrue( mc2.getFamilyName() == "Keating" ) + self.assertTrue( mc2.getEmail() == "sbml-team@caltech.edu" ) mc2 = None mc = None pass @@ -165,14 +165,14 @@ def test_ModelHistory_assignmentOperator(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) date = None - self.assert_( mh.getCreatedDate().getMonth() == 12 ) - self.assert_( mh.getCreatedDate().getSecond() == 45 ) - self.assert_( mh.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh.getCreator(0).getFamilyName() == "Keating" ) mh2 = libsbml.ModelHistory() mh2 = mh - self.assert_( mh2.getCreatedDate().getMonth() == 12 ) - self.assert_( mh2.getCreatedDate().getSecond() == 45 ) - self.assert_( mh2.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh2.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh2.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh2.getCreator(0).getFamilyName() == "Keating" ) mh2 = None mh = None pass @@ -188,13 +188,13 @@ def test_ModelHistory_clone(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) date = None - self.assert_( mh.getCreatedDate().getMonth() == 12 ) - self.assert_( mh.getCreatedDate().getSecond() == 45 ) - self.assert_( mh.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh.getCreator(0).getFamilyName() == "Keating" ) mh2 = mh.clone() - self.assert_( mh2.getCreatedDate().getMonth() == 12 ) - self.assert_( mh2.getCreatedDate().getSecond() == 45 ) - self.assert_( mh2.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh2.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh2.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh2.getCreator(0).getFamilyName() == "Keating" ) mh2 = None mh = None pass @@ -210,13 +210,13 @@ def test_ModelHistory_copyConstructor(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) date = None - self.assert_( mh.getCreatedDate().getMonth() == 12 ) - self.assert_( mh.getCreatedDate().getSecond() == 45 ) - self.assert_( mh.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh.getCreator(0).getFamilyName() == "Keating" ) mh2 = libsbml.ModelHistory(mh) - self.assert_( mh2.getCreatedDate().getMonth() == 12 ) - self.assert_( mh2.getCreatedDate().getSecond() == 45 ) - self.assert_( mh2.getCreator(0).getFamilyName() == "Keating" ) + self.assertTrue( mh2.getCreatedDate().getMonth() == 12 ) + self.assertTrue( mh2.getCreatedDate().getSecond() == 45 ) + self.assertTrue( mh2.getCreator(0).getFamilyName() == "Keating" ) mh2 = None mh = None pass diff --git a/src/bindings/python/test/annotation/TestCVTerms.py b/src/bindings/python/test/annotation/TestCVTerms.py index 0d0e96a77e..0ac8f86809 100644 --- a/src/bindings/python/test/annotation/TestCVTerms.py +++ b/src/bindings/python/test/annotation/TestCVTerms.py @@ -40,20 +40,20 @@ class TestCVTerms(unittest.TestCase): def test_CVTerm_addResource(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) resource = "GO6666"; - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) term.addResource(resource) xa = term.getResources() - self.assert_( xa.getLength() == 1 ) - self.assert_(( "rdf:resource" == xa.getName(0) )) - self.assert_(( "GO6666" == xa.getValue(0) )) + self.assertTrue( xa.getLength() == 1 ) + self.assertTrue(( "rdf:resource" == xa.getName(0) )) + self.assertTrue(( "GO6666" == xa.getValue(0) )) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass def test_CVTerm_create(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass @@ -73,13 +73,13 @@ def test_CVTerm_createFromNode(self): bag.addChild(li) node.addChild(bag) term = libsbml.CVTerm(node) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_IS ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_IS ) xa = term.getResources() - self.assert_( xa.getLength() == 1 ) - self.assert_(( "rdf:resource" == xa.getName(0) )) - self.assert_(( "This is my resource" == xa.getValue(0) )) + self.assertTrue( xa.getLength() == 1 ) + self.assertTrue(( "rdf:resource" == xa.getName(0) )) + self.assertTrue(( "This is my resource" == xa.getValue(0) )) _dummyList = [ qual_triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ bag_triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ li_triple ]; _dummyList[:] = []; del _dummyList @@ -101,24 +101,24 @@ def test_CVTerm_getResources(self): term.addResource(resource) term.addResource(resource1) number = term.getNumResources() - self.assert_( number == 2 ) - self.assert_(( "GO6666" == term.getResourceURI(0) )) - self.assert_(( "OtherURI" == term.getResourceURI(1) )) + self.assertTrue( number == 2 ) + self.assertTrue(( "GO6666" == term.getResourceURI(0) )) + self.assertTrue(( "OtherURI" == term.getResourceURI(1) )) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass def test_CVTerm_set_get(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) term.setModelQualifierType(libsbml.BQM_IS) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_IS ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_IS ) term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER) term.setBiologicalQualifierType(libsbml.BQB_IS) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_IS ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_IS ) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestCVTerms_newSetters.py b/src/bindings/python/test/annotation/TestCVTerms_newSetters.py index 7d2c78ee3d..c0cabea298 100644 --- a/src/bindings/python/test/annotation/TestCVTerms_newSetters.py +++ b/src/bindings/python/test/annotation/TestCVTerms_newSetters.py @@ -40,85 +40,85 @@ class TestCVTerms_newSetters(unittest.TestCase): def test_CVTerm_addResource(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) resource = "GO6666"; - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) i = term.addResource( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) xa = term.getResources() - self.assert_( xa.getLength() == 0 ) + self.assertTrue( xa.getLength() == 0 ) i = term.addResource(resource) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) xa = term.getResources() - self.assert_( xa.getLength() == 1 ) - self.assert_(( "rdf:resource" == xa.getName(0) )) - self.assert_(( "GO6666" == xa.getValue(0) )) + self.assertTrue( xa.getLength() == 1 ) + self.assertTrue(( "rdf:resource" == xa.getName(0) )) + self.assertTrue(( "GO6666" == xa.getValue(0) )) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass def test_CVTerm_removeResource(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) resource = "GO6666"; - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) term.addResource(resource) xa = term.getResources() - self.assert_( xa.getLength() == 1 ) + self.assertTrue( xa.getLength() == 1 ) i = term.removeResource( "CCC") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) xa = term.getResources() - self.assert_( xa.getLength() == 1 ) + self.assertTrue( xa.getLength() == 1 ) i = term.removeResource(resource) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) xa = term.getResources() - self.assert_( xa.getLength() == 0 ) + self.assertTrue( xa.getLength() == 0 ) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass def test_CVTerm_setBiolQualifierType(self): term = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) i = term.setBiologicalQualifierType(libsbml.BQB_IS) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_IS ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_IS ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) i = term.setQualifierType(libsbml.MODEL_QUALIFIER) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) i = term.setBiologicalQualifierType(libsbml.BQB_IS) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass def test_CVTerm_setModelQualifierType(self): term = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) - self.assert_( term != None ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( term != None ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) i = term.setModelQualifierType(libsbml.BQM_IS) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_IS ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( term.getQualifierType() == libsbml.MODEL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_IS ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) i = term.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) i = term.setModelQualifierType(libsbml.BQM_IS) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) - self.assert_( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) - self.assert_( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( term.getQualifierType() == libsbml.BIOLOGICAL_QUALIFIER ) + self.assertTrue( term.getBiologicalQualifierType() == libsbml.BQB_UNKNOWN ) + self.assertTrue( term.getModelQualifierType() == libsbml.BQM_UNKNOWN ) _dummyList = [ term ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestDate_newSetters.py b/src/bindings/python/test/annotation/TestDate_newSetters.py index b5ec5be8a1..69e13ef94b 100644 --- a/src/bindings/python/test/annotation/TestDate_newSetters.py +++ b/src/bindings/python/test/annotation/TestDate_newSetters.py @@ -39,152 +39,152 @@ class TestDate_newSetters(unittest.TestCase): def test_Date_setDateAsString(self): date = libsbml.Date(2007,10,23,14,15,16,1,3,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setDateAsString( "20081-12-30T12:15:45+02:00") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_(( "2007-10-23T14:15:16+03:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue(( "2007-10-23T14:15:16+03:00" == date.getDateAsString() )) i = date.setDateAsString( "200-12-30T12:15:45+02:00") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_(( "2007-10-23T14:15:16+03:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue(( "2007-10-23T14:15:16+03:00" == date.getDateAsString() )) i = date.setDateAsString("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "2000-01-01T00:00:00Z" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "2000-01-01T00:00:00Z" == date.getDateAsString() )) i = date.setDateAsString( "2008-12-30T12:15:45+02:00") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getYear() == 2008 ) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 12 ) - self.assert_( date.getMinute() == 15 ) - self.assert_( date.getSecond() == 45 ) - self.assert_( date.getSignOffset() == 1 ) - self.assert_( date.getHoursOffset() == 2 ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getYear() == 2008 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 12 ) + self.assertTrue( date.getMinute() == 15 ) + self.assertTrue( date.getSecond() == 45 ) + self.assertTrue( date.getSignOffset() == 1 ) + self.assertTrue( date.getHoursOffset() == 2 ) + self.assertTrue( date.getMinutesOffset() == 0 ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setDay(self): date = libsbml.Date(2005,2,12,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setDay(29) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getDay() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getDay() == 1 ) i = date.setDay(31) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getDay() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getDay() == 1 ) i = date.setDay(15) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getDay() == 15 ) - self.assert_(( "2005-02-15T12:15:45+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getDay() == 15 ) + self.assertTrue(( "2005-02-15T12:15:45+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setHour(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setHour(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getHour() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getHour() == 0 ) i = date.setHour(12121) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getHour() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getHour() == 0 ) i = date.setHour(9) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getHour() == 9 ) - self.assert_(( "2005-12-30T09:15:45+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getHour() == 9 ) + self.assertTrue(( "2005-12-30T09:15:45+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setHoursOffset(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setHoursOffset(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getHoursOffset() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getHoursOffset() == 0 ) i = date.setHoursOffset(11) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getHoursOffset() == 11 ) - self.assert_(( "2005-12-30T12:15:45+11:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getHoursOffset() == 11 ) + self.assertTrue(( "2005-12-30T12:15:45+11:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setMinute(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setMinute(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMinute() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMinute() == 0 ) i = date.setMinute(12121) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMinute() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMinute() == 0 ) i = date.setMinute(32) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getMinute() == 32 ) - self.assert_(( "2005-12-30T12:32:45+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getMinute() == 32 ) + self.assertTrue(( "2005-12-30T12:32:45+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setMinutesOffset(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setMinutesOffset(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMinutesOffset() == 0 ) i = date.setMinutesOffset(60) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMinutesOffset() == 0 ) i = date.setMinutesOffset(45) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getMinutesOffset() == 45 ) - self.assert_(( "2005-12-30T12:15:45+02:45" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getMinutesOffset() == 45 ) + self.assertTrue(( "2005-12-30T12:15:45+02:45" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setMonth(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setMonth(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMonth() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMonth() == 1 ) i = date.setMonth(12121) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getMonth() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getMonth() == 1 ) i = date.setMonth(11) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getMonth() == 11 ) - self.assert_(( "2005-11-30T12:15:45+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getMonth() == 11 ) + self.assertTrue(( "2005-11-30T12:15:45+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setSecond(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setSecond(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getSecond() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getSecond() == 0 ) i = date.setSecond(12121) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getSecond() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getSecond() == 0 ) i = date.setSecond(32) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getSecond() == 32 ) - self.assert_(( "2005-12-30T12:15:32+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getSecond() == 32 ) + self.assertTrue(( "2005-12-30T12:15:32+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setYear(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) i = date.setYear(434) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getYear() == 2000 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getYear() == 2000 ) i = date.setYear(12121) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( date.getYear() == 2000 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( date.getYear() == 2000 ) i = date.setYear(2008) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( date.getYear() == 2008 ) - self.assert_(( "2008-12-30T12:15:45+02:00" == date.getDateAsString() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( date.getYear() == 2008 ) + self.assertTrue(( "2008-12-30T12:15:45+02:00" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestL3ModelHistory.py b/src/bindings/python/test/annotation/TestL3ModelHistory.py index 32f22be8a2..18db60fb99 100644 --- a/src/bindings/python/test/annotation/TestL3ModelHistory.py +++ b/src/bindings/python/test/annotation/TestL3ModelHistory.py @@ -68,8 +68,8 @@ def test_L3ModelHistory_delete(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.c) n1 = libsbml.RDFAnnotationParser.deleteRDFAnnotation(node) expected = "<annotation/>"; - self.assert_( n1.getNumChildren() == 0 ) - self.assert_( n1.getName() == "annotation" ) + self.assertTrue( n1.getNumChildren() == 0 ) + self.assertTrue( n1.getName() == "annotation" ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) node = None pass @@ -106,235 +106,235 @@ def test_L3ModelHistory_delete_Model(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.m) n1 = libsbml.RDFAnnotationParser.deleteRDFAnnotation(node) expected = "<annotation/>"; - self.assert_( n1.getNumChildren() == 0 ) - self.assert_( n1.getName() == "annotation" ) + self.assertTrue( n1.getNumChildren() == 0 ) + self.assertTrue( n1.getName() == "annotation" ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) node = None pass def test_L3ModelHistory_getModelHistory(self): - self.assert_( (self.c == None) == False ) + self.assertTrue( (self.c == None) == False ) history = self.c.getModelHistory() - self.assert_( history != None ) + self.assertTrue( history != None ) mc = history.getCreator(0) - self.assert_(( "Le Novere" == mc.getFamilyName() )) - self.assert_(( "Nicolas" == mc.getGivenName() )) - self.assert_(( "lenov@ebi.ac.uk" == mc.getEmail() )) - self.assert_(( "EMBL-EBI" == mc.getOrganisation() )) + self.assertTrue(( "Le Novere" == mc.getFamilyName() )) + self.assertTrue(( "Nicolas" == mc.getGivenName() )) + self.assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() )) + self.assertTrue(( "EMBL-EBI" == mc.getOrganisation() )) date = history.getCreatedDate() - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() - self.assert_( date.getYear() == 2006 ) - self.assert_( date.getMonth() == 5 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 10 ) - self.assert_( date.getMinute() == 46 ) - self.assert_( date.getSecond() == 2 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2006 ) + self.assertTrue( date.getMonth() == 5 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 10 ) + self.assertTrue( date.getMinute() == 46 ) + self.assertTrue( date.getSecond() == 2 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) pass def test_L3ModelHistory_getModelHistory_Model(self): - self.assert_( (self.m == None) == False ) + self.assertTrue( (self.m == None) == False ) history = self.m.getModelHistory() - self.assert_( history != None ) + self.assertTrue( history != None ) mc = history.getCreator(0) - self.assert_(( "Le Novere" == mc.getFamilyName() )) - self.assert_(( "Nicolas" == mc.getGivenName() )) - self.assert_(( "lenov@ebi.ac.uk" == mc.getEmail() )) - self.assert_(( "EMBL-EBI" == mc.getOrganisation() )) + self.assertTrue(( "Le Novere" == mc.getFamilyName() )) + self.assertTrue(( "Nicolas" == mc.getGivenName() )) + self.assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() )) + self.assertTrue(( "EMBL-EBI" == mc.getOrganisation() )) date = history.getCreatedDate() - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() - self.assert_( date.getYear() == 2006 ) - self.assert_( date.getMonth() == 5 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 10 ) - self.assert_( date.getMinute() == 46 ) - self.assert_( date.getSecond() == 2 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2006 ) + self.assertTrue( date.getMonth() == 5 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 10 ) + self.assertTrue( date.getMinute() == 46 ) + self.assertTrue( date.getSecond() == 2 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) pass def test_L3ModelHistory_parseModelHistory(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.c) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 4 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 4 ) creator = desc.getChild(0) - self.assert_(( "creator" == creator.getName() )) - self.assert_(( "dcterms" == creator.getPrefix() )) - self.assert_( creator.getNumChildren() == 1 ) + self.assertTrue(( "creator" == creator.getName() )) + self.assertTrue(( "dcterms" == creator.getPrefix() )) + self.assertTrue( creator.getNumChildren() == 1 ) Bag = creator.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 1 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 1 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 3 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 3 ) N = li.getChild(0) - self.assert_(( "N" == N.getName() )) - self.assert_(( "vCard" == N.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) - self.assert_( N.getNumChildren() == 2 ) + self.assertTrue(( "N" == N.getName() )) + self.assertTrue(( "vCard" == N.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) + self.assertTrue( N.getNumChildren() == 2 ) Family = N.getChild(0) - self.assert_(( "Family" == Family.getName() )) - self.assert_(( "vCard" == Family.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) - self.assert_( Family.getNumChildren() == 1 ) + self.assertTrue(( "Family" == Family.getName() )) + self.assertTrue(( "vCard" == Family.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) + self.assertTrue( Family.getNumChildren() == 1 ) Given = N.getChild(1) - self.assert_(( "Given" == Given.getName() )) - self.assert_(( "vCard" == Given.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) - self.assert_( Given.getNumChildren() == 1 ) + self.assertTrue(( "Given" == Given.getName() )) + self.assertTrue(( "vCard" == Given.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) + self.assertTrue( Given.getNumChildren() == 1 ) EMAIL = li.getChild(1) - self.assert_(( "EMAIL" == EMAIL.getName() )) - self.assert_(( "vCard" == EMAIL.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) - self.assert_( EMAIL.getNumChildren() == 1 ) + self.assertTrue(( "EMAIL" == EMAIL.getName() )) + self.assertTrue(( "vCard" == EMAIL.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) + self.assertTrue( EMAIL.getNumChildren() == 1 ) ORG = li.getChild(2) - self.assert_(( "ORG" == ORG.getName() )) - self.assert_(( "vCard" == ORG.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) - self.assert_( ORG.getNumChildren() == 1 ) + self.assertTrue(( "ORG" == ORG.getName() )) + self.assertTrue(( "vCard" == ORG.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) + self.assertTrue( ORG.getNumChildren() == 1 ) Orgname = ORG.getChild(0) - self.assert_(( "Orgname" == Orgname.getName() )) - self.assert_(( "vCard" == Orgname.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) - self.assert_( Orgname.getNumChildren() == 1 ) + self.assertTrue(( "Orgname" == Orgname.getName() )) + self.assertTrue(( "vCard" == Orgname.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) + self.assertTrue( Orgname.getNumChildren() == 1 ) created = desc.getChild(1) - self.assert_(( "created" == created.getName() )) - self.assert_(( "dcterms" == created.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == created.getURI() )) - self.assert_( created.getNumChildren() == 1 ) + self.assertTrue(( "created" == created.getName() )) + self.assertTrue(( "dcterms" == created.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == created.getURI() )) + self.assertTrue( created.getNumChildren() == 1 ) cr_date = created.getChild(0) - self.assert_(( "W3CDTF" == cr_date.getName() )) - self.assert_(( "dcterms" == cr_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == cr_date.getURI() )) - self.assert_( cr_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == cr_date.getName() )) + self.assertTrue(( "dcterms" == cr_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() )) + self.assertTrue( cr_date.getNumChildren() == 1 ) modified = desc.getChild(2) - self.assert_(( "modified" == modified.getName() )) - self.assert_(( "dcterms" == modified.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == modified.getURI() )) - self.assert_( modified.getNumChildren() == 1 ) + self.assertTrue(( "modified" == modified.getName() )) + self.assertTrue(( "dcterms" == modified.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() )) + self.assertTrue( modified.getNumChildren() == 1 ) mo_date = created.getChild(0) - self.assert_(( "W3CDTF" == mo_date.getName() )) - self.assert_(( "dcterms" == mo_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == mo_date.getURI() )) - self.assert_( mo_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == mo_date.getName() )) + self.assertTrue(( "dcterms" == mo_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() )) + self.assertTrue( mo_date.getNumChildren() == 1 ) node = None pass def test_L3ModelHistory_parseModelHistory_Model(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.m) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 4 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 4 ) creator = desc.getChild(0) - self.assert_(( "creator" == creator.getName() )) - self.assert_(( "dcterms" == creator.getPrefix() )) - self.assert_( creator.getNumChildren() == 1 ) + self.assertTrue(( "creator" == creator.getName() )) + self.assertTrue(( "dcterms" == creator.getPrefix() )) + self.assertTrue( creator.getNumChildren() == 1 ) Bag = creator.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 1 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 1 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 3 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 3 ) N = li.getChild(0) - self.assert_(( "N" == N.getName() )) - self.assert_(( "vCard" == N.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) - self.assert_( N.getNumChildren() == 2 ) + self.assertTrue(( "N" == N.getName() )) + self.assertTrue(( "vCard" == N.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) + self.assertTrue( N.getNumChildren() == 2 ) Family = N.getChild(0) - self.assert_(( "Family" == Family.getName() )) - self.assert_(( "vCard" == Family.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) - self.assert_( Family.getNumChildren() == 1 ) + self.assertTrue(( "Family" == Family.getName() )) + self.assertTrue(( "vCard" == Family.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) + self.assertTrue( Family.getNumChildren() == 1 ) Given = N.getChild(1) - self.assert_(( "Given" == Given.getName() )) - self.assert_(( "vCard" == Given.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) - self.assert_( Given.getNumChildren() == 1 ) + self.assertTrue(( "Given" == Given.getName() )) + self.assertTrue(( "vCard" == Given.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) + self.assertTrue( Given.getNumChildren() == 1 ) EMAIL = li.getChild(1) - self.assert_(( "EMAIL" == EMAIL.getName() )) - self.assert_(( "vCard" == EMAIL.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) - self.assert_( EMAIL.getNumChildren() == 1 ) + self.assertTrue(( "EMAIL" == EMAIL.getName() )) + self.assertTrue(( "vCard" == EMAIL.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) + self.assertTrue( EMAIL.getNumChildren() == 1 ) ORG = li.getChild(2) - self.assert_(( "ORG" == ORG.getName() )) - self.assert_(( "vCard" == ORG.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) - self.assert_( ORG.getNumChildren() == 1 ) + self.assertTrue(( "ORG" == ORG.getName() )) + self.assertTrue(( "vCard" == ORG.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) + self.assertTrue( ORG.getNumChildren() == 1 ) Orgname = ORG.getChild(0) - self.assert_(( "Orgname" == Orgname.getName() )) - self.assert_(( "vCard" == Orgname.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) - self.assert_( Orgname.getNumChildren() == 1 ) + self.assertTrue(( "Orgname" == Orgname.getName() )) + self.assertTrue(( "vCard" == Orgname.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) + self.assertTrue( Orgname.getNumChildren() == 1 ) created = desc.getChild(1) - self.assert_(( "created" == created.getName() )) - self.assert_(( "dcterms" == created.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == created.getURI() )) - self.assert_( created.getNumChildren() == 1 ) + self.assertTrue(( "created" == created.getName() )) + self.assertTrue(( "dcterms" == created.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == created.getURI() )) + self.assertTrue( created.getNumChildren() == 1 ) cr_date = created.getChild(0) - self.assert_(( "W3CDTF" == cr_date.getName() )) - self.assert_(( "dcterms" == cr_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == cr_date.getURI() )) - self.assert_( cr_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == cr_date.getName() )) + self.assertTrue(( "dcterms" == cr_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() )) + self.assertTrue( cr_date.getNumChildren() == 1 ) modified = desc.getChild(2) - self.assert_(( "modified" == modified.getName() )) - self.assert_(( "dcterms" == modified.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == modified.getURI() )) - self.assert_( modified.getNumChildren() == 1 ) + self.assertTrue(( "modified" == modified.getName() )) + self.assertTrue(( "dcterms" == modified.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() )) + self.assertTrue( modified.getNumChildren() == 1 ) mo_date = created.getChild(0) - self.assert_(( "W3CDTF" == mo_date.getName() )) - self.assert_(( "dcterms" == mo_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == mo_date.getURI() )) - self.assert_( mo_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == mo_date.getName() )) + self.assertTrue(( "dcterms" == mo_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() )) + self.assertTrue( mo_date.getNumChildren() == 1 ) node = None pass diff --git a/src/bindings/python/test/annotation/TestModelCreator_newSetters.py b/src/bindings/python/test/annotation/TestModelCreator_newSetters.py index 04263f153b..c5a2f375de 100644 --- a/src/bindings/python/test/annotation/TestModelCreator_newSetters.py +++ b/src/bindings/python/test/annotation/TestModelCreator_newSetters.py @@ -39,73 +39,73 @@ class TestModelCreator_newSetters(unittest.TestCase): def test_ModelCreator_setEmail(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) i = mc.setEmail( "Keating") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetEmail() == True ) - self.assert_(( "Keating" == mc.getEmail() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetEmail() == True ) + self.assertTrue(( "Keating" == mc.getEmail() )) i = mc.setEmail( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetEmail() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetEmail() == False ) i = mc.setEmail( "Keating") - self.assert_( mc.isSetEmail() == True ) + self.assertTrue( mc.isSetEmail() == True ) i = mc.unsetEmail() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetEmail() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetEmail() == False ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass def test_ModelCreator_setFamilyName(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) i = mc.setFamilyName( "Keating") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetFamilyName() == True ) - self.assert_(( "Keating" == mc.getFamilyName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetFamilyName() == True ) + self.assertTrue(( "Keating" == mc.getFamilyName() )) i = mc.setFamilyName( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetFamilyName() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetFamilyName() == False ) i = mc.setFamilyName( "Keating") - self.assert_( mc.isSetFamilyName() == True ) + self.assertTrue( mc.isSetFamilyName() == True ) i = mc.unsetFamilyName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetFamilyName() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetFamilyName() == False ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass def test_ModelCreator_setGivenName(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) i = mc.setGivenName( "Sarah") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetGivenName() == True ) - self.assert_(( "Sarah" == mc.getGivenName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetGivenName() == True ) + self.assertTrue(( "Sarah" == mc.getGivenName() )) i = mc.setGivenName( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetGivenName() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetGivenName() == False ) i = mc.setGivenName( "Sarah") - self.assert_( mc.isSetGivenName() == True ) + self.assertTrue( mc.isSetGivenName() == True ) i = mc.unsetGivenName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetGivenName() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetGivenName() == False ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass def test_ModelCreator_setOrganization(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) i = mc.setOrganization( "Caltech") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetOrganization() == True ) - self.assert_(( "Caltech" == mc.getOrganization() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetOrganization() == True ) + self.assertTrue(( "Caltech" == mc.getOrganization() )) i = mc.setOrganization( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetOrganization() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetOrganization() == False ) i = mc.setOrganization( "Caltech") - self.assert_( mc.isSetOrganization() == True ) + self.assertTrue( mc.isSetOrganization() == True ) i = mc.unsetOrganization() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mc.isSetOrganization() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mc.isSetOrganization() == False ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestModelHistory.py b/src/bindings/python/test/annotation/TestModelHistory.py index e3c7d7dd02..910b5b5549 100644 --- a/src/bindings/python/test/annotation/TestModelHistory.py +++ b/src/bindings/python/test/annotation/TestModelHistory.py @@ -39,49 +39,49 @@ class TestModelHistory(unittest.TestCase): def test_Date_create(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 12 ) - self.assert_( date.getMinute() == 15 ) - self.assert_( date.getSecond() == 45 ) - self.assert_( date.getSignOffset() == 1 ) - self.assert_( date.getHoursOffset() == 2 ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( date != None ) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 12 ) + self.assertTrue( date.getMinute() == 15 ) + self.assertTrue( date.getSecond() == 45 ) + self.assertTrue( date.getSignOffset() == 1 ) + self.assertTrue( date.getHoursOffset() == 2 ) + self.assertTrue( date.getMinutesOffset() == 0 ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_createFromString(self): dd = "2012-12-02T14:56:11Z"; date = libsbml.Date(dd) - self.assert_( date != None ) - self.assert_(( "2012-12-02T14:56:11Z" == date.getDateAsString() )) - self.assert_( date.getYear() == 2012 ) - self.assert_( date.getMonth() == 12 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( date != None ) + self.assertTrue(( "2012-12-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2012 ) + self.assertTrue( date.getMonth() == 12 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_getDateAsString(self): dd = "2005-02-02T14:56:11Z"; date = libsbml.Date(dd) - self.assert_( date != None ) - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) + self.assertTrue( date != None ) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) date.setYear(2012) date.setMonth(3) date.setDay(28) @@ -91,13 +91,13 @@ def test_Date_getDateAsString(self): date.setSignOffset(1) date.setHoursOffset(2) date.setMinutesOffset(32) - self.assert_(( "2012-03-28T23:04:32+02:32" == date.getDateAsString() )) + self.assertTrue(( "2012-03-28T23:04:32+02:32" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_Date_setters(self): date = libsbml.Date(2005,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) date.setYear(2012) date.setMonth(3) date.setDay(28) @@ -107,174 +107,174 @@ def test_Date_setters(self): date.setSignOffset(1) date.setHoursOffset(2) date.setMinutesOffset(32) - self.assert_( date.getYear() == 2012 ) - self.assert_( date.getMonth() == 3 ) - self.assert_( date.getDay() == 28 ) - self.assert_( date.getHour() == 23 ) - self.assert_( date.getMinute() == 4 ) - self.assert_( date.getSecond() == 32 ) - self.assert_( date.getSignOffset() == 1 ) - self.assert_( date.getHoursOffset() == 2 ) - self.assert_( date.getMinutesOffset() == 32 ) - self.assert_(( "2012-03-28T23:04:32+02:32" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2012 ) + self.assertTrue( date.getMonth() == 3 ) + self.assertTrue( date.getDay() == 28 ) + self.assertTrue( date.getHour() == 23 ) + self.assertTrue( date.getMinute() == 4 ) + self.assertTrue( date.getSecond() == 32 ) + self.assertTrue( date.getSignOffset() == 1 ) + self.assertTrue( date.getHoursOffset() == 2 ) + self.assertTrue( date.getMinutesOffset() == 32 ) + self.assertTrue(( "2012-03-28T23:04:32+02:32" == date.getDateAsString() )) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList pass def test_ModelCreator_create(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass def test_ModelCreator_setters(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) - self.assert_( mc.isSetFamilyName() == False ) - self.assert_( mc.isSetGivenName() == False ) - self.assert_( mc.isSetEmail() == False ) - self.assert_( mc.isSetOrganisation() == False ) + self.assertTrue( mc != None ) + self.assertTrue( mc.isSetFamilyName() == False ) + self.assertTrue( mc.isSetGivenName() == False ) + self.assertTrue( mc.isSetEmail() == False ) + self.assertTrue( mc.isSetOrganisation() == False ) mc.setFamilyName( "Keating") mc.setGivenName( "Sarah") mc.setEmail( "sbml-team@caltech.edu") mc.setOrganisation( "UH") - self.assert_(( "Keating" == mc.getFamilyName() )) - self.assert_(( "Sarah" == mc.getGivenName() )) - self.assert_(( "sbml-team@caltech.edu" == mc.getEmail() )) - self.assert_(( "UH" == mc.getOrganisation() )) - self.assert_( mc.isSetFamilyName() == True ) - self.assert_( mc.isSetGivenName() == True ) - self.assert_( mc.isSetEmail() == True ) - self.assert_( mc.isSetOrganisation() == True ) + self.assertTrue(( "Keating" == mc.getFamilyName() )) + self.assertTrue(( "Sarah" == mc.getGivenName() )) + self.assertTrue(( "sbml-team@caltech.edu" == mc.getEmail() )) + self.assertTrue(( "UH" == mc.getOrganisation() )) + self.assertTrue( mc.isSetFamilyName() == True ) + self.assertTrue( mc.isSetGivenName() == True ) + self.assertTrue( mc.isSetEmail() == True ) + self.assertTrue( mc.isSetOrganisation() == True ) mc.unsetFamilyName() mc.unsetGivenName() mc.unsetEmail() mc.unsetOrganisation() - self.assert_(( "" == mc.getFamilyName() )) - self.assert_(( "" == mc.getGivenName() )) - self.assert_(( "" == mc.getEmail() )) - self.assert_(( "" == mc.getOrganisation() )) - self.assert_( mc.isSetFamilyName() == False ) - self.assert_( mc.isSetGivenName() == False ) - self.assert_( mc.isSetEmail() == False ) - self.assert_( mc.isSetOrganisation() == False ) - self.assert_( mc.isSetOrganization() == False ) + self.assertTrue(( "" == mc.getFamilyName() )) + self.assertTrue(( "" == mc.getGivenName() )) + self.assertTrue(( "" == mc.getEmail() )) + self.assertTrue(( "" == mc.getOrganisation() )) + self.assertTrue( mc.isSetFamilyName() == False ) + self.assertTrue( mc.isSetGivenName() == False ) + self.assertTrue( mc.isSetEmail() == False ) + self.assertTrue( mc.isSetOrganisation() == False ) + self.assertTrue( mc.isSetOrganization() == False ) mc.setOrganization( "UH") - self.assert_(( "UH" == mc.getOrganization() )) - self.assert_( mc.isSetOrganization() == True ) + self.assertTrue(( "UH" == mc.getOrganization() )) + self.assertTrue( mc.isSetOrganization() == True ) mc.unsetOrganisation() - self.assert_(( "" == mc.getOrganization() )) - self.assert_( mc.isSetOrganization() == False ) + self.assertTrue(( "" == mc.getOrganization() )) + self.assertTrue( mc.isSetOrganization() == False ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_addCreator(self): history = libsbml.ModelHistory() - self.assert_( history.getNumCreators() == 0 ) - self.assert_( history != None ) + self.assertTrue( history.getNumCreators() == 0 ) + self.assertTrue( history != None ) mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) mc.setFamilyName( "Keating") mc.setGivenName( "Sarah") mc.setEmail( "sbml-team@caltech.edu") mc.setOrganisation( "UH") history.addCreator(mc) - self.assert_( history.getNumCreators() == 1 ) + self.assertTrue( history.getNumCreators() == 1 ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList newMC = history.getListCreators().get(0) - self.assert_( newMC != None ) - self.assert_(( "Keating" == newMC.getFamilyName() )) - self.assert_(( "Sarah" == newMC.getGivenName() )) - self.assert_(( "sbml-team@caltech.edu" == newMC.getEmail() )) - self.assert_(( "UH" == newMC.getOrganisation() )) + self.assertTrue( newMC != None ) + self.assertTrue(( "Keating" == newMC.getFamilyName() )) + self.assertTrue(( "Sarah" == newMC.getGivenName() )) + self.assertTrue(( "sbml-team@caltech.edu" == newMC.getEmail() )) + self.assertTrue(( "UH" == newMC.getOrganisation() )) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_addModifiedDate(self): history = libsbml.ModelHistory() - self.assert_( history != None ) - self.assert_( history.isSetModifiedDate() == False ) - self.assert_( history.getNumModifiedDates() == 0 ) + self.assertTrue( history != None ) + self.assertTrue( history.isSetModifiedDate() == False ) + self.assertTrue( history.getNumModifiedDates() == 0 ) date = libsbml.Date(2005,12,30,12,15,45,1,2,0) history.addModifiedDate(date) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList - self.assert_( history.getNumModifiedDates() == 1 ) - self.assert_( history.isSetModifiedDate() == True ) + self.assertTrue( history.getNumModifiedDates() == 1 ) + self.assertTrue( history.isSetModifiedDate() == True ) newdate = history.getListModifiedDates().get(0) - self.assert_( newdate.getYear() == 2005 ) - self.assert_( newdate.getMonth() == 12 ) - self.assert_( newdate.getDay() == 30 ) - self.assert_( newdate.getHour() == 12 ) - self.assert_( newdate.getMinute() == 15 ) - self.assert_( newdate.getSecond() == 45 ) - self.assert_( newdate.getSignOffset() == 1 ) - self.assert_( newdate.getHoursOffset() == 2 ) - self.assert_( newdate.getMinutesOffset() == 0 ) + self.assertTrue( newdate.getYear() == 2005 ) + self.assertTrue( newdate.getMonth() == 12 ) + self.assertTrue( newdate.getDay() == 30 ) + self.assertTrue( newdate.getHour() == 12 ) + self.assertTrue( newdate.getMinute() == 15 ) + self.assertTrue( newdate.getSecond() == 45 ) + self.assertTrue( newdate.getSignOffset() == 1 ) + self.assertTrue( newdate.getHoursOffset() == 2 ) + self.assertTrue( newdate.getMinutesOffset() == 0 ) date1 = libsbml.Date(2008,11,2,16,42,40,1,2,0) history.addModifiedDate(date1) _dummyList = [ date1 ]; _dummyList[:] = []; del _dummyList - self.assert_( history.getNumModifiedDates() == 2 ) - self.assert_( history.isSetModifiedDate() == True ) + self.assertTrue( history.getNumModifiedDates() == 2 ) + self.assertTrue( history.isSetModifiedDate() == True ) newdate1 = history.getModifiedDate(1) - self.assert_( newdate1.getYear() == 2008 ) - self.assert_( newdate1.getMonth() == 11 ) - self.assert_( newdate1.getDay() == 2 ) - self.assert_( newdate1.getHour() == 16 ) - self.assert_( newdate1.getMinute() == 42 ) - self.assert_( newdate1.getSecond() == 40 ) - self.assert_( newdate1.getSignOffset() == 1 ) - self.assert_( newdate1.getHoursOffset() == 2 ) - self.assert_( newdate1.getMinutesOffset() == 0 ) + self.assertTrue( newdate1.getYear() == 2008 ) + self.assertTrue( newdate1.getMonth() == 11 ) + self.assertTrue( newdate1.getDay() == 2 ) + self.assertTrue( newdate1.getHour() == 16 ) + self.assertTrue( newdate1.getMinute() == 42 ) + self.assertTrue( newdate1.getSecond() == 40 ) + self.assertTrue( newdate1.getSignOffset() == 1 ) + self.assertTrue( newdate1.getHoursOffset() == 2 ) + self.assertTrue( newdate1.getMinutesOffset() == 0 ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_create(self): history = libsbml.ModelHistory() - self.assert_( history != None ) - self.assert_( history.getListCreators() != None ) - self.assert_( history.getCreatedDate() == None ) - self.assert_( history.getModifiedDate() == None ) + self.assertTrue( history != None ) + self.assertTrue( history.getListCreators() != None ) + self.assertTrue( history.getCreatedDate() == None ) + self.assertTrue( history.getModifiedDate() == None ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setCreatedDate(self): history = libsbml.ModelHistory() - self.assert_( history != None ) - self.assert_( history.isSetCreatedDate() == False ) + self.assertTrue( history != None ) + self.assertTrue( history.isSetCreatedDate() == False ) date = libsbml.Date(2005,12,30,12,15,45,1,2,0) history.setCreatedDate(date) - self.assert_( history.isSetCreatedDate() == True ) + self.assertTrue( history.isSetCreatedDate() == True ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList newdate = history.getCreatedDate() - self.assert_( newdate.getYear() == 2005 ) - self.assert_( newdate.getMonth() == 12 ) - self.assert_( newdate.getDay() == 30 ) - self.assert_( newdate.getHour() == 12 ) - self.assert_( newdate.getMinute() == 15 ) - self.assert_( newdate.getSecond() == 45 ) - self.assert_( newdate.getSignOffset() == 1 ) - self.assert_( newdate.getHoursOffset() == 2 ) - self.assert_( newdate.getMinutesOffset() == 0 ) + self.assertTrue( newdate.getYear() == 2005 ) + self.assertTrue( newdate.getMonth() == 12 ) + self.assertTrue( newdate.getDay() == 30 ) + self.assertTrue( newdate.getHour() == 12 ) + self.assertTrue( newdate.getMinute() == 15 ) + self.assertTrue( newdate.getSecond() == 45 ) + self.assertTrue( newdate.getSignOffset() == 1 ) + self.assertTrue( newdate.getHoursOffset() == 2 ) + self.assertTrue( newdate.getMinutesOffset() == 0 ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setModifiedDate(self): history = libsbml.ModelHistory() - self.assert_( history != None ) - self.assert_( history.isSetModifiedDate() == False ) + self.assertTrue( history != None ) + self.assertTrue( history.isSetModifiedDate() == False ) date = libsbml.Date(2005,12,30,12,15,45,1,2,0) history.setModifiedDate(date) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList - self.assert_( history.isSetModifiedDate() == True ) + self.assertTrue( history.isSetModifiedDate() == True ) newdate = history.getModifiedDate() - self.assert_( newdate.getYear() == 2005 ) - self.assert_( newdate.getMonth() == 12 ) - self.assert_( newdate.getDay() == 30 ) - self.assert_( newdate.getHour() == 12 ) - self.assert_( newdate.getMinute() == 15 ) - self.assert_( newdate.getSecond() == 45 ) - self.assert_( newdate.getSignOffset() == 1 ) - self.assert_( newdate.getHoursOffset() == 2 ) - self.assert_( newdate.getMinutesOffset() == 0 ) + self.assertTrue( newdate.getYear() == 2005 ) + self.assertTrue( newdate.getMonth() == 12 ) + self.assertTrue( newdate.getDay() == 30 ) + self.assertTrue( newdate.getHour() == 12 ) + self.assertTrue( newdate.getMinute() == 15 ) + self.assertTrue( newdate.getSecond() == 45 ) + self.assertTrue( newdate.getSignOffset() == 1 ) + self.assertTrue( newdate.getHoursOffset() == 2 ) + self.assertTrue( newdate.getMinutesOffset() == 0 ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestModelHistory_newSetters.py b/src/bindings/python/test/annotation/TestModelHistory_newSetters.py index 24ff6740ea..bc7bf38c73 100644 --- a/src/bindings/python/test/annotation/TestModelHistory_newSetters.py +++ b/src/bindings/python/test/annotation/TestModelHistory_newSetters.py @@ -43,8 +43,8 @@ def test_ModelHistory_addCreator1(self): mc.setFamilyName( "Keating") mc.setGivenName( "Sarah") i = mh.addCreator(mc) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mh.getNumCreators() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mh.getNumCreators() == 1 ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass @@ -54,8 +54,8 @@ def test_ModelHistory_addCreator2(self): mc = libsbml.ModelCreator() mc.setGivenName( "Sarah") i = mh.addCreator(mc) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( mh.getNumCreators() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( mh.getNumCreators() == 0 ) _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass @@ -64,63 +64,63 @@ def test_ModelHistory_addCreator3(self): mh = libsbml.ModelHistory() mc = None i = mh.addCreator(mc) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( mh.getNumCreators() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( mh.getNumCreators() == 0 ) _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setCreatedDate1(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) date = libsbml.Date("2005-12-30T12:15:32+02:00") i = mh.setCreatedDate(date) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mh.isSetCreatedDate() == True ) - self.assert_( date != mh.getCreatedDate() ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mh.isSetCreatedDate() == True ) + self.assertTrue( date != mh.getCreatedDate() ) dateChar = mh.getCreatedDate().getDateAsString() - self.assert_(( "2005-12-30T12:15:32+02:00" == dateChar )) + self.assertTrue(( "2005-12-30T12:15:32+02:00" == dateChar )) i = mh.setCreatedDate(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mh.isSetCreatedDate() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mh.isSetCreatedDate() == False ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setCreatedDate2(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) date = libsbml.Date("Jan 12") i = mh.setCreatedDate(date) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( mh.isSetCreatedDate() == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( mh.isSetCreatedDate() == False ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setModifiedDate1(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) date = libsbml.Date("2005-12-30T12:15:32+02:00") i = mh.setModifiedDate(date) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( mh.isSetModifiedDate() == True ) - self.assert_( date != mh.getModifiedDate() ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( mh.isSetModifiedDate() == True ) + self.assertTrue( date != mh.getModifiedDate() ) dateChar = mh.getModifiedDate().getDateAsString() - self.assert_(( "2005-12-30T12:15:32+02:00" == dateChar )) + self.assertTrue(( "2005-12-30T12:15:32+02:00" == dateChar )) i = mh.setModifiedDate(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( mh.isSetModifiedDate() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( mh.isSetModifiedDate() == True ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass def test_ModelHistory_setModifiedDate2(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) date = libsbml.Date(200,13,76,56,89,90,0,0,0) i = mh.setModifiedDate(date) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( mh.isSetModifiedDate() == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( mh.isSetModifiedDate() == False ) _dummyList = [ date ]; _dummyList[:] = []; del _dummyList _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestRDFAnnotation.py b/src/bindings/python/test/annotation/TestRDFAnnotation.py index b6c48cc5a6..ffae30f9b7 100644 --- a/src/bindings/python/test/annotation/TestRDFAnnotation.py +++ b/src/bindings/python/test/annotation/TestRDFAnnotation.py @@ -66,8 +66,8 @@ def test_RDFAnnotation_delete(self): node = libsbml.RDFAnnotationParser.parseCVTerms(self.m.getCompartment(0)) n1 = libsbml.RDFAnnotationParser.deleteRDFAnnotation(node) expected = "<annotation/>"; - self.assert_( n1.getNumChildren() == 0 ) - self.assert_( n1.getName() == "annotation" ) + self.assertTrue( n1.getNumChildren() == 0 ) + self.assertTrue( n1.getName() == "annotation" ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) node = None pass @@ -119,10 +119,10 @@ def test_RDFAnnotation_deleteCVTerms(self): + "</annotation>") n1 = libsbml.RDFAnnotationParser.deleteRDFCVTermAnnotation(None) - self.assert_( n1 == None ) + self.assertTrue( n1 == None ) n1 = libsbml.RDFAnnotationParser.deleteRDFCVTermAnnotation(node) - self.assert_( n1.getNumChildren() == 0 ) - self.assert_( n1.getName() == "annotation" ) + self.assertTrue( n1.getNumChildren() == 0 ) + self.assertTrue( n1.getName() == "annotation" ) self.assertEqual( True, self.equals(empty,n1.toXMLString()) ) node = self.m.getCompartment(2).getAnnotation() n1 = libsbml.RDFAnnotationParser.deleteRDFCVTermAnnotation(node) @@ -135,7 +135,7 @@ def test_RDFAnnotation_deleteCVTerms(self): self.assertEqual( True, self.equals(otherRDF,n1.toXMLString()) ) node = libsbml.XMLNode.convertStringToXMLNode("<notannotatio/>") n1 = libsbml.RDFAnnotationParser.deleteRDFCVTermAnnotation(node) - self.assert_( n1 == None ) + self.assertTrue( n1 == None ) pass def test_RDFAnnotation_deleteWithOther(self): @@ -199,105 +199,105 @@ def test_RDFAnnotation_deleteWithOutOther(self): pass def test_RDFAnnotation_getModelHistory(self): - self.assert_( (self.m == None) == False ) + self.assertTrue( (self.m == None) == False ) history = self.m.getModelHistory() - self.assert_( history != None ) + self.assertTrue( history != None ) mc = history.getCreator(0) - self.assert_(( "Le Novere" == mc.getFamilyName() )) - self.assert_(( "Nicolas" == mc.getGivenName() )) - self.assert_(( "lenov@ebi.ac.uk" == mc.getEmail() )) - self.assert_(( "EMBL-EBI" == mc.getOrganisation() )) + self.assertTrue(( "Le Novere" == mc.getFamilyName() )) + self.assertTrue(( "Nicolas" == mc.getGivenName() )) + self.assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() )) + self.assertTrue(( "EMBL-EBI" == mc.getOrganisation() )) date = history.getCreatedDate() - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() - self.assert_( date.getYear() == 2006 ) - self.assert_( date.getMonth() == 5 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 10 ) - self.assert_( date.getMinute() == 46 ) - self.assert_( date.getSecond() == 2 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2006 ) + self.assertTrue( date.getMonth() == 5 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 10 ) + self.assertTrue( date.getMinute() == 46 ) + self.assertTrue( date.getSecond() == 2 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) pass def test_RDFAnnotation_parseCVTerms(self): node = libsbml.RDFAnnotationParser.parseCVTerms(self.m.getCompartment(0)) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 1 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 1 ) is1 = desc.getChild(0) - self.assert_(( "is" == is1.getName() )) - self.assert_(( "bqbiol" == is1.getPrefix() )) - self.assert_( is1.getNumChildren() == 1 ) + self.assertTrue(( "is" == is1.getName() )) + self.assertTrue(( "bqbiol" == is1.getPrefix() )) + self.assertTrue( is1.getNumChildren() == 1 ) Bag = is1.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 4 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 4 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 0 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 0 ) li1 = Bag.getChild(1) - self.assert_(( "li" == li1.getName() )) - self.assert_(( "rdf" == li1.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() )) - self.assert_( li1.getNumChildren() == 0 ) + self.assertTrue(( "li" == li1.getName() )) + self.assertTrue(( "rdf" == li1.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() )) + self.assertTrue( li1.getNumChildren() == 0 ) li2 = Bag.getChild(2) - self.assert_(( "li" == li2.getName() )) - self.assert_(( "rdf" == li2.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() )) - self.assert_( li2.getNumChildren() == 0 ) + self.assertTrue(( "li" == li2.getName() )) + self.assertTrue(( "rdf" == li2.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() )) + self.assertTrue( li2.getNumChildren() == 0 ) li3 = Bag.getChild(3) - self.assert_(( "li" == li3.getName() )) - self.assert_(( "rdf" == li3.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() )) - self.assert_( li3.getNumChildren() == 0 ) + self.assertTrue(( "li" == li3.getName() )) + self.assertTrue(( "rdf" == li3.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() )) + self.assertTrue( li3.getNumChildren() == 0 ) node = None node1 = libsbml.RDFAnnotationParser.parseCVTerms(None) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.createCVTerms(None) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.parseCVTerms(self.m.getCompartment(2)) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.createCVTerms(self.m.getCompartment(2)) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.parseCVTerms(self.m) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.createCVTerms(self.m) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) c = libsbml.Compartment(3,1) c.setMetaId("_002") node1 = libsbml.RDFAnnotationParser.parseCVTerms(c) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) node1 = libsbml.RDFAnnotationParser.createCVTerms(c) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) cv = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv.setBiologicalQualifierType(23) cv.addResource("http://myres") c.addCVTerm(cv) node1 = libsbml.RDFAnnotationParser.createCVTerms(c) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) c = None m1 = libsbml.Model(3,1) m1.setMetaId("_002") @@ -306,86 +306,86 @@ def test_RDFAnnotation_parseCVTerms(self): cv.addResource("http://myres") m1.addCVTerm(cv) node1 = libsbml.RDFAnnotationParser.createCVTerms(m1) - self.assert_( node1 == None ) + self.assertTrue( node1 == None ) pass def test_RDFAnnotation_parseModelHistory(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.m) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 3 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 3 ) creator = desc.getChild(0) - self.assert_(( "creator" == creator.getName() )) - self.assert_(( "dc" == creator.getPrefix() )) - self.assert_( creator.getNumChildren() == 1 ) + self.assertTrue(( "creator" == creator.getName() )) + self.assertTrue(( "dc" == creator.getPrefix() )) + self.assertTrue( creator.getNumChildren() == 1 ) Bag = creator.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 1 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 1 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 3 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 3 ) N = li.getChild(0) - self.assert_(( "N" == N.getName() )) - self.assert_(( "vCard" == N.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) - self.assert_( N.getNumChildren() == 2 ) + self.assertTrue(( "N" == N.getName() )) + self.assertTrue(( "vCard" == N.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) + self.assertTrue( N.getNumChildren() == 2 ) Family = N.getChild(0) - self.assert_(( "Family" == Family.getName() )) - self.assert_(( "vCard" == Family.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) - self.assert_( Family.getNumChildren() == 1 ) + self.assertTrue(( "Family" == Family.getName() )) + self.assertTrue(( "vCard" == Family.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) + self.assertTrue( Family.getNumChildren() == 1 ) Given = N.getChild(1) - self.assert_(( "Given" == Given.getName() )) - self.assert_(( "vCard" == Given.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) - self.assert_( Given.getNumChildren() == 1 ) + self.assertTrue(( "Given" == Given.getName() )) + self.assertTrue(( "vCard" == Given.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) + self.assertTrue( Given.getNumChildren() == 1 ) EMAIL = li.getChild(1) - self.assert_(( "EMAIL" == EMAIL.getName() )) - self.assert_(( "vCard" == EMAIL.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) - self.assert_( EMAIL.getNumChildren() == 1 ) + self.assertTrue(( "EMAIL" == EMAIL.getName() )) + self.assertTrue(( "vCard" == EMAIL.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) + self.assertTrue( EMAIL.getNumChildren() == 1 ) ORG = li.getChild(2) - self.assert_(( "ORG" == ORG.getName() )) - self.assert_(( "vCard" == ORG.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) - self.assert_( ORG.getNumChildren() == 1 ) + self.assertTrue(( "ORG" == ORG.getName() )) + self.assertTrue(( "vCard" == ORG.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) + self.assertTrue( ORG.getNumChildren() == 1 ) Orgname = ORG.getChild(0) - self.assert_(( "Orgname" == Orgname.getName() )) - self.assert_(( "vCard" == Orgname.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) - self.assert_( Orgname.getNumChildren() == 1 ) + self.assertTrue(( "Orgname" == Orgname.getName() )) + self.assertTrue(( "vCard" == Orgname.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) + self.assertTrue( Orgname.getNumChildren() == 1 ) created = desc.getChild(1) - self.assert_(( "created" == created.getName() )) - self.assert_(( "dcterms" == created.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == created.getURI() )) - self.assert_( created.getNumChildren() == 1 ) + self.assertTrue(( "created" == created.getName() )) + self.assertTrue(( "dcterms" == created.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == created.getURI() )) + self.assertTrue( created.getNumChildren() == 1 ) cr_date = created.getChild(0) - self.assert_(( "W3CDTF" == cr_date.getName() )) - self.assert_(( "dcterms" == cr_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == cr_date.getURI() )) - self.assert_( cr_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == cr_date.getName() )) + self.assertTrue(( "dcterms" == cr_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() )) + self.assertTrue( cr_date.getNumChildren() == 1 ) modified = desc.getChild(2) - self.assert_(( "modified" == modified.getName() )) - self.assert_(( "dcterms" == modified.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == modified.getURI() )) - self.assert_( modified.getNumChildren() == 1 ) + self.assertTrue(( "modified" == modified.getName() )) + self.assertTrue(( "dcterms" == modified.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() )) + self.assertTrue( modified.getNumChildren() == 1 ) mo_date = created.getChild(0) - self.assert_(( "W3CDTF" == mo_date.getName() )) - self.assert_(( "dcterms" == mo_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == mo_date.getURI() )) - self.assert_( mo_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == mo_date.getName() )) + self.assertTrue(( "dcterms" == mo_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() )) + self.assertTrue( mo_date.getNumChildren() == 1 ) node = None pass @@ -420,42 +420,42 @@ def test_RDFAnnotation_removeAnnotation(self): "</annotation>") i = self.m.getCompartment(4).removeTopLevelAnnotationElement("JDesignerLayout") n1 = self.m.getCompartment(4).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) i = self.m.getListOfCompartments().removeTopLevelAnnotationElement("RDF") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) pass def test_RDFAnnotation_removeSingleAnnotation(self): n1 = None i = self.m.getCompartment(0).removeTopLevelAnnotationElement("RDF") n1 = self.m.getCompartment(0).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n1 == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n1 == None ) i = self.m.getCompartment(2).removeTopLevelAnnotationElement("JDesignerLayout") n1 = self.m.getCompartment(2).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n1 == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n1 == None ) i = self.m.getCompartment(3).removeTopLevelAnnotationElement("RDF", "http://www.w3.org/1999/02/22-rdf-syntax-ns#") n1 = self.m.getCompartment(3).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n1 == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n1 == None ) pass def test_RDFAnnotation_removeSingleAnnotation1(self): n1 = None i = self.m.getCompartment(0).removeTopLevelAnnotationElement("RDF1") n1 = self.m.getCompartment(0).getAnnotation() - self.assert_( i == libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND ) - self.assert_( n1.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND ) + self.assertTrue( n1.getNumChildren() == 1 ) i = self.m.getCompartment(2).removeTopLevelAnnotationElement("JDLayout") n1 = self.m.getCompartment(2).getAnnotation() - self.assert_( i == libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND ) - self.assert_( n1.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND ) + self.assertTrue( n1.getNumChildren() == 1 ) i = self.m.getCompartment(3).removeTopLevelAnnotationElement("RDF", "http://www.w3.org/1999/02/22-rdf-syntax-ns") n1 = self.m.getCompartment(3).getAnnotation() - self.assert_( i == libsbml.LIBSBML_ANNOTATION_NS_NOT_FOUND ) - self.assert_( n1.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_ANNOTATION_NS_NOT_FOUND ) + self.assertTrue( n1.getNumChildren() == 1 ) pass def test_RDFAnnotation_replaceAnnotation(self): @@ -484,7 +484,7 @@ def test_RDFAnnotation_replaceAnnotation(self): "</annotation>") i = self.m.getCompartment(0).replaceTopLevelAnnotationElement(node) n1 = self.m.getCompartment(0).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) pass @@ -549,7 +549,7 @@ def test_RDFAnnotation_replaceAnnotation1(self): "</annotation>") i = self.m.getCompartment(4).replaceTopLevelAnnotationElement(noRDF) n1 = self.m.getCompartment(4).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.equals(expected,n1.toXMLString()) ) pass @@ -609,17 +609,17 @@ def test_RDFAnnotation_replaceAnnotation2(self): + "</annotation>") i = self.m.getCompartment(4).replaceTopLevelAnnotationElement(twoAnn) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) i = self.m.getCompartment(4).replaceTopLevelAnnotationElement(jd) n1 = self.m.getCompartment(4).getAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.equals(twoAnn,n1.toXMLString()) ) pass def test_RDFAnnotation_testAnnotationForMetaId(self): doc = libsbml.SBMLDocument( 3,1 ) model = doc.createModel() - self.assert_( model != None ) + self.assertTrue( model != None ) model.setId("test1") term = libsbml.CVTerm( libsbml.MODEL_QUALIFIER ) term.addResource("testResource") @@ -628,7 +628,7 @@ def test_RDFAnnotation_testAnnotationForMetaId(self): model.addCVTerm(term) model.setMetaId("") test = model.toSBML() - self.assert_( test == "<model id=\"test1\"/>" ) + self.assertTrue( test == "<model id=\"test1\"/>" ) pass @@ -706,25 +706,25 @@ def test_RDFAnnotation_testMissingAbout(self): stream = libsbml.XMLInputStream( withAbout,False ) node = libsbml.XMLNode( stream ) libsbml.RDFAnnotationParser.parseRDFAnnotation(node,cvTerms) - self.assert_( cvTerms.getSize() == 1 ) + self.assertTrue( cvTerms.getSize() == 1 ) cvTerms = None cvTerms = libsbml.CVTermList() libsbml.RDFAnnotationParser.parseRDFAnnotation(node,cvTerms ) - self.assert_( cvTerms.getSize() == 1 ) + self.assertTrue( cvTerms.getSize() == 1 ) cvTerms = None cvTerms = None cvTerms = libsbml.CVTermList() stream1 = libsbml.XMLInputStream( emptyAbout,False ) node1 = libsbml.XMLNode( stream1 ) libsbml.RDFAnnotationParser.parseRDFAnnotation(node1,cvTerms) - self.assert_( cvTerms.getSize() == 0 ) + self.assertTrue( cvTerms.getSize() == 0 ) cvTerms = None cvTerms = None cvTerms = libsbml.CVTermList() stream2 = libsbml.XMLInputStream( noAbout,False ) node2 = libsbml.XMLNode( stream2 ) libsbml.RDFAnnotationParser.parseRDFAnnotation(node2,cvTerms) - self.assert_( cvTerms.getSize() == 0 ) + self.assertTrue( cvTerms.getSize() == 0 ) cvTerms = None cvTerms = None pass @@ -732,7 +732,7 @@ def test_RDFAnnotation_testMissingAbout(self): def test_RDFAnnotation_testMissingMetaId(self): doc = libsbml.SBMLDocument( 3,1 ) model = doc.createModel() - self.assert_( model != None ) + self.assertTrue( model != None ) model.setId("test1") term = libsbml.CVTerm( libsbml.MODEL_QUALIFIER ) term.addResource("testResource") @@ -741,7 +741,7 @@ def test_RDFAnnotation_testMissingMetaId(self): model.addCVTerm(term) model.setMetaId("") test = model.toSBML() - self.assert_( test == "<model id=\"test1\"/>" ) + self.assertTrue( test == "<model id=\"test1\"/>" ) pass def suite(): diff --git a/src/bindings/python/test/annotation/TestRDFAnnotation2.py b/src/bindings/python/test/annotation/TestRDFAnnotation2.py index da3bf7a1c4..05558ea216 100644 --- a/src/bindings/python/test/annotation/TestRDFAnnotation2.py +++ b/src/bindings/python/test/annotation/TestRDFAnnotation2.py @@ -63,50 +63,50 @@ def tearDown(self): def test_RDFAnnotation2_getModelHistory(self): history = self.m2.getModelHistory() - self.assert_( history != None ) + self.assertTrue( history != None ) mc = history.getCreator(0) - self.assert_(( "Hucka" == mc.getFamilyName() )) - self.assert_(( "Mike" == mc.getGivenName() )) - self.assert_(( "mhucka@caltech.edu" == mc.getEmail() )) - self.assert_(( "BNMC" == mc.getOrganisation() )) + self.assertTrue(( "Hucka" == mc.getFamilyName() )) + self.assertTrue(( "Mike" == mc.getGivenName() )) + self.assertTrue(( "mhucka@caltech.edu" == mc.getEmail() )) + self.assertTrue(( "BNMC" == mc.getOrganisation() )) mc1 = history.getCreator(1) - self.assert_(( "Keating" == mc1.getFamilyName() )) - self.assert_(( "Sarah" == mc1.getGivenName() )) - self.assert_(( "skeating@caltech.edu" == mc1.getEmail() )) - self.assert_(( "UH" == mc1.getOrganisation() )) + self.assertTrue(( "Keating" == mc1.getFamilyName() )) + self.assertTrue(( "Sarah" == mc1.getGivenName() )) + self.assertTrue(( "skeating@caltech.edu" == mc1.getEmail() )) + self.assertTrue(( "UH" == mc1.getOrganisation() )) date = history.getCreatedDate() - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() - self.assert_( date.getYear() == 2006 ) - self.assert_( date.getMonth() == 5 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 10 ) - self.assert_( date.getMinute() == 46 ) - self.assert_( date.getSecond() == 2 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2006 ) + self.assertTrue( date.getMonth() == 5 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 10 ) + self.assertTrue( date.getMinute() == 46 ) + self.assertTrue( date.getSecond() == 2 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) date = history.getModifiedDate(1) - self.assert_( date.getYear() == 2007 ) - self.assert_( date.getMonth() == 1 ) - self.assert_( date.getDay() == 16 ) - self.assert_( date.getHour() == 15 ) - self.assert_( date.getMinute() == 31 ) - self.assert_( date.getSecond() == 52 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2007-01-16T15:31:52Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2007 ) + self.assertTrue( date.getMonth() == 1 ) + self.assertTrue( date.getDay() == 16 ) + self.assertTrue( date.getHour() == 15 ) + self.assertTrue( date.getMinute() == 31 ) + self.assertTrue( date.getSecond() == 52 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2007-01-16T15:31:52Z" == date.getDateAsString() )) pass def test_RDFAnnotation2_modelWithHistoryAndCVTerms(self): diff --git a/src/bindings/python/test/annotation/TestRDFAnnotationC.py b/src/bindings/python/test/annotation/TestRDFAnnotationC.py index 17bc8ab6b6..b3b246cde5 100644 --- a/src/bindings/python/test/annotation/TestRDFAnnotationC.py +++ b/src/bindings/python/test/annotation/TestRDFAnnotationC.py @@ -55,167 +55,167 @@ def test_RDFAnnotation_C_delete(self): obj = self.m.getCompartment(0) node = libsbml.RDFAnnotationParser.parseCVTerms(obj) n1 = libsbml.RDFAnnotationParser.deleteRDFAnnotation(node) - self.assert_( n1.getNumChildren() == 0 ) - self.assert_(( "annotation" == n1.getName() )) + self.assertTrue( n1.getNumChildren() == 0 ) + self.assertTrue(( "annotation" == n1.getName() )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_RDFAnnotation_C_getModelHistory(self): - self.assert_( (self.m == None) == False ) + self.assertTrue( (self.m == None) == False ) history = self.m.getModelHistory() - self.assert_( history != None ) + self.assertTrue( history != None ) mc = history.getCreator(0) - self.assert_(( "Le Novere" == mc.getFamilyName() )) - self.assert_(( "Nicolas" == mc.getGivenName() )) - self.assert_(( "lenov@ebi.ac.uk" == mc.getEmail() )) - self.assert_(( "EMBL-EBI" == mc.getOrganisation() )) + self.assertTrue(( "Le Novere" == mc.getFamilyName() )) + self.assertTrue(( "Nicolas" == mc.getGivenName() )) + self.assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() )) + self.assertTrue(( "EMBL-EBI" == mc.getOrganisation() )) date = history.getCreatedDate() - self.assert_( date.getYear() == 2005 ) - self.assert_( date.getMonth() == 2 ) - self.assert_( date.getDay() == 2 ) - self.assert_( date.getHour() == 14 ) - self.assert_( date.getMinute() == 56 ) - self.assert_( date.getSecond() == 11 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2005 ) + self.assertTrue( date.getMonth() == 2 ) + self.assertTrue( date.getDay() == 2 ) + self.assertTrue( date.getHour() == 14 ) + self.assertTrue( date.getMinute() == 56 ) + self.assertTrue( date.getSecond() == 11 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() - self.assert_( date.getYear() == 2006 ) - self.assert_( date.getMonth() == 5 ) - self.assert_( date.getDay() == 30 ) - self.assert_( date.getHour() == 10 ) - self.assert_( date.getMinute() == 46 ) - self.assert_( date.getSecond() == 2 ) - self.assert_( date.getSignOffset() == 0 ) - self.assert_( date.getHoursOffset() == 0 ) - self.assert_( date.getMinutesOffset() == 0 ) - self.assert_(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) + self.assertTrue( date.getYear() == 2006 ) + self.assertTrue( date.getMonth() == 5 ) + self.assertTrue( date.getDay() == 30 ) + self.assertTrue( date.getHour() == 10 ) + self.assertTrue( date.getMinute() == 46 ) + self.assertTrue( date.getSecond() == 2 ) + self.assertTrue( date.getSignOffset() == 0 ) + self.assertTrue( date.getHoursOffset() == 0 ) + self.assertTrue( date.getMinutesOffset() == 0 ) + self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) pass def test_RDFAnnotation_C_parseCVTerms(self): obj = self.m.getCompartment(0) node = libsbml.RDFAnnotationParser.parseCVTerms(obj) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 1 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 1 ) is1 = desc.getChild(0) - self.assert_(( "is" == is1.getName() )) - self.assert_(( "bqbiol" == is1.getPrefix() )) - self.assert_( is1.getNumChildren() == 1 ) + self.assertTrue(( "is" == is1.getName() )) + self.assertTrue(( "bqbiol" == is1.getPrefix() )) + self.assertTrue( is1.getNumChildren() == 1 ) Bag = is1.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 4 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 4 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 0 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 0 ) li1 = Bag.getChild(1) - self.assert_(( "li" == li1.getName() )) - self.assert_(( "rdf" == li1.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() )) - self.assert_( li1.getNumChildren() == 0 ) + self.assertTrue(( "li" == li1.getName() )) + self.assertTrue(( "rdf" == li1.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() )) + self.assertTrue( li1.getNumChildren() == 0 ) li2 = Bag.getChild(2) - self.assert_(( "li" == li2.getName() )) - self.assert_(( "rdf" == li2.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() )) - self.assert_( li2.getNumChildren() == 0 ) + self.assertTrue(( "li" == li2.getName() )) + self.assertTrue(( "rdf" == li2.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() )) + self.assertTrue( li2.getNumChildren() == 0 ) li3 = Bag.getChild(3) - self.assert_(( "li" == li3.getName() )) - self.assert_(( "rdf" == li3.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() )) - self.assert_( li3.getNumChildren() == 0 ) + self.assertTrue(( "li" == li3.getName() )) + self.assertTrue(( "rdf" == li3.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() )) + self.assertTrue( li3.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_RDFAnnotation_C_parseModelHistory(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.m) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) - self.assert_(( "RDF" == rdf.getName() )) - self.assert_(( "rdf" == rdf.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) - self.assert_( rdf.getNumChildren() == 1 ) + self.assertTrue(( "RDF" == rdf.getName() )) + self.assertTrue(( "rdf" == rdf.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) + self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) - self.assert_(( "Description" == desc.getName() )) - self.assert_(( "rdf" == desc.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) - self.assert_( desc.getNumChildren() == 3 ) + self.assertTrue(( "Description" == desc.getName() )) + self.assertTrue(( "rdf" == desc.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) + self.assertTrue( desc.getNumChildren() == 3 ) creator = desc.getChild(0) - self.assert_(( "creator" == creator.getName() )) - self.assert_(( "dc" == creator.getPrefix() )) - self.assert_( creator.getNumChildren() == 1 ) + self.assertTrue(( "creator" == creator.getName() )) + self.assertTrue(( "dc" == creator.getPrefix() )) + self.assertTrue( creator.getNumChildren() == 1 ) Bag = creator.getChild(0) - self.assert_(( "Bag" == Bag.getName() )) - self.assert_(( "rdf" == Bag.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) - self.assert_( Bag.getNumChildren() == 1 ) + self.assertTrue(( "Bag" == Bag.getName() )) + self.assertTrue(( "rdf" == Bag.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) + self.assertTrue( Bag.getNumChildren() == 1 ) li = Bag.getChild(0) - self.assert_(( "li" == li.getName() )) - self.assert_(( "rdf" == li.getPrefix() )) - self.assert_(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) - self.assert_( li.getNumChildren() == 3 ) + self.assertTrue(( "li" == li.getName() )) + self.assertTrue(( "rdf" == li.getPrefix() )) + self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) + self.assertTrue( li.getNumChildren() == 3 ) N = li.getChild(0) - self.assert_(( "N" == N.getName() )) - self.assert_(( "vCard" == N.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) - self.assert_( N.getNumChildren() == 2 ) + self.assertTrue(( "N" == N.getName() )) + self.assertTrue(( "vCard" == N.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) + self.assertTrue( N.getNumChildren() == 2 ) Family = N.getChild(0) - self.assert_(( "Family" == Family.getName() )) - self.assert_(( "vCard" == Family.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) - self.assert_( Family.getNumChildren() == 1 ) + self.assertTrue(( "Family" == Family.getName() )) + self.assertTrue(( "vCard" == Family.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) + self.assertTrue( Family.getNumChildren() == 1 ) Given = N.getChild(1) - self.assert_(( "Given" == Given.getName() )) - self.assert_(( "vCard" == Given.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) - self.assert_( Given.getNumChildren() == 1 ) + self.assertTrue(( "Given" == Given.getName() )) + self.assertTrue(( "vCard" == Given.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) + self.assertTrue( Given.getNumChildren() == 1 ) EMAIL = li.getChild(1) - self.assert_(( "EMAIL" == EMAIL.getName() )) - self.assert_(( "vCard" == EMAIL.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) - self.assert_( EMAIL.getNumChildren() == 1 ) + self.assertTrue(( "EMAIL" == EMAIL.getName() )) + self.assertTrue(( "vCard" == EMAIL.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) + self.assertTrue( EMAIL.getNumChildren() == 1 ) ORG = li.getChild(2) - self.assert_(( "ORG" == ORG.getName() )) - self.assert_(( "vCard" == ORG.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) - self.assert_( ORG.getNumChildren() == 1 ) + self.assertTrue(( "ORG" == ORG.getName() )) + self.assertTrue(( "vCard" == ORG.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) + self.assertTrue( ORG.getNumChildren() == 1 ) Orgname = ORG.getChild(0) - self.assert_(( "Orgname" == Orgname.getName() )) - self.assert_(( "vCard" == Orgname.getPrefix() )) - self.assert_(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) - self.assert_( Orgname.getNumChildren() == 1 ) + self.assertTrue(( "Orgname" == Orgname.getName() )) + self.assertTrue(( "vCard" == Orgname.getPrefix() )) + self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) + self.assertTrue( Orgname.getNumChildren() == 1 ) created = desc.getChild(1) - self.assert_(( "created" == created.getName() )) - self.assert_(( "dcterms" == created.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == created.getURI() )) - self.assert_( created.getNumChildren() == 1 ) + self.assertTrue(( "created" == created.getName() )) + self.assertTrue(( "dcterms" == created.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == created.getURI() )) + self.assertTrue( created.getNumChildren() == 1 ) cr_date = created.getChild(0) - self.assert_(( "W3CDTF" == cr_date.getName() )) - self.assert_(( "dcterms" == cr_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == cr_date.getURI() )) - self.assert_( cr_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == cr_date.getName() )) + self.assertTrue(( "dcterms" == cr_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() )) + self.assertTrue( cr_date.getNumChildren() == 1 ) modified = desc.getChild(2) - self.assert_(( "modified" == modified.getName() )) - self.assert_(( "dcterms" == modified.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == modified.getURI() )) - self.assert_( modified.getNumChildren() == 1 ) + self.assertTrue(( "modified" == modified.getName() )) + self.assertTrue(( "dcterms" == modified.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() )) + self.assertTrue( modified.getNumChildren() == 1 ) mo_date = created.getChild(0) - self.assert_(( "W3CDTF" == mo_date.getName() )) - self.assert_(( "dcterms" == mo_date.getPrefix() )) - self.assert_(( "http://purl.org/dc/terms/" == mo_date.getURI() )) - self.assert_( mo_date.getNumChildren() == 1 ) + self.assertTrue(( "W3CDTF" == mo_date.getName() )) + self.assertTrue(( "dcterms" == mo_date.getPrefix() )) + self.assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() )) + self.assertTrue( mo_date.getNumChildren() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/annotation/TestValidation.py b/src/bindings/python/test/annotation/TestValidation.py index 67500d46f7..23296cd201 100644 --- a/src/bindings/python/test/annotation/TestValidation.py +++ b/src/bindings/python/test/annotation/TestValidation.py @@ -39,7 +39,7 @@ class TestValidation(unittest.TestCase): def test_Validation_CVTerm1(self): cv = libsbml.CVTerm() - self.assert_( cv != None ) + self.assertTrue( cv != None ) self.assertEqual( False, (cv.hasRequiredAttributes()) ) cv.setQualifierType(libsbml.MODEL_QUALIFIER) self.assertEqual( False, (cv.hasRequiredAttributes()) ) @@ -52,7 +52,7 @@ def test_Validation_CVTerm1(self): def test_Validation_CVTerm2(self): cv = libsbml.CVTerm() - self.assert_( cv != None ) + self.assertTrue( cv != None ) self.assertEqual( False, (cv.hasRequiredAttributes()) ) cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER) self.assertEqual( False, (cv.hasRequiredAttributes()) ) @@ -65,35 +65,35 @@ def test_Validation_CVTerm2(self): def test_Validation_Date1(self): date = libsbml.Date(200,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) self.assertEqual( False, (date.representsValidDate()) ) date = None pass def test_Validation_Date2(self): date = libsbml.Date(2007,14,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) self.assertEqual( False, (date.representsValidDate()) ) date = None pass def test_Validation_Date3(self): date = libsbml.Date("Jan 12") - self.assert_( date != None ) + self.assertTrue( date != None ) self.assertEqual( False, (date.representsValidDate()) ) date = None pass def test_Validation_Date4(self): date = libsbml.Date(2007,12,30,12,15,45,1,2,0) - self.assert_( date != None ) + self.assertTrue( date != None ) self.assertEqual( True, date.representsValidDate() ) date = None pass def test_Validation_ModelCreator(self): mc = libsbml.ModelCreator() - self.assert_( mc != None ) + self.assertTrue( mc != None ) self.assertEqual( False, (mc.hasRequiredAttributes()) ) mc.setEmail("k123") self.assertEqual( False, (mc.hasRequiredAttributes()) ) @@ -106,7 +106,7 @@ def test_Validation_ModelCreator(self): def test_Validation_ModelHistory1(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) self.assertEqual( False, (mh.hasRequiredAttributes()) ) date = libsbml.Date(2007,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) @@ -123,7 +123,7 @@ def test_Validation_ModelHistory1(self): def test_Validation_ModelHistory2(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) self.assertEqual( False, (mh.hasRequiredAttributes()) ) date = libsbml.Date(200,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) @@ -140,7 +140,7 @@ def test_Validation_ModelHistory2(self): def test_Validation_ModelHistory3(self): mh = libsbml.ModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) self.assertEqual( False, (mh.hasRequiredAttributes()) ) date = libsbml.Date(2007,12,30,12,15,45,1,2,0) mh.setCreatedDate(date) diff --git a/src/bindings/python/test/math/TestASTNode.py b/src/bindings/python/test/math/TestASTNode.py index d31be62bda..4c4c54908f 100644 --- a/src/bindings/python/test/math/TestASTNode.py +++ b/src/bindings/python/test/math/TestASTNode.py @@ -50,16 +50,16 @@ def test_ASTNode_addChild1(self): c2.setName( "b") node.addChild(c1) node.addChild(c2) - self.assert_( node.getNumChildren() == 2 ) - self.assert_(( "and(a, b)" == libsbml.formulaToString(node) )) + self.assertTrue( node.getNumChildren() == 2 ) + self.assertTrue(( "and(a, b)" == libsbml.formulaToString(node) )) c1_1.setName( "d") i = node.addChild(c1_1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(a, b, d)" == libsbml.formulaToString(node) )) - self.assert_(( "a" == node.getChild(0).getName() )) - self.assert_(( "b" == node.getChild(1).getName() )) - self.assert_(( "d" == node.getChild(2).getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(a, b, d)" == libsbml.formulaToString(node) )) + self.assertTrue(( "a" == node.getChild(0).getName() )) + self.assertTrue(( "b" == node.getChild(1).getName() )) + self.assertTrue(( "d" == node.getChild(2).getName() )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -68,11 +68,11 @@ def test_ASTNode_addSemanticsAnnotation(self): node = libsbml.ASTNode() i = 0 i = node.addSemanticsAnnotation(ann) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumSemanticsAnnotations() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumSemanticsAnnotations() == 1 ) i = node.addSemanticsAnnotation(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( node.getNumSemanticsAnnotations() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( node.getNumSemanticsAnnotations() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -80,10 +80,10 @@ def test_ASTNode_avogadro(self): n = libsbml.ASTNode() n.setType(libsbml.AST_NAME_AVOGADRO) n.setName( "NA") - self.assert_(( "NA" == n.getName() )) + self.assertTrue(( "NA" == n.getName() )) val = n.getReal() - self.assert_( val == 6.02214179e23 ) - self.assert_( n.isConstant() == 1 ) + self.assertTrue( val == 6.02214179e23 ) + self.assertTrue( n.isConstant() == 1 ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -91,10 +91,10 @@ def test_ASTNode_avogadro_bug(self): n = libsbml.ASTNode() n.setName( "NA") n.setType(libsbml.AST_NAME_AVOGADRO) - self.assert_(( "NA" == n.getName() )) + self.assertTrue(( "NA" == n.getName() )) val = n.getReal() - self.assert_( val == 6.02214179e23 ) - self.assert_( n.isConstant() == 1 ) + self.assertTrue( val == 6.02214179e23 ) + self.assertTrue( n.isConstant() == 1 ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -103,22 +103,22 @@ def test_ASTNode_canonicalizeConstants(self): n.setName( "ExponentialE") self.assertEqual( True, n.isName() ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_CONSTANT_E ) + self.assertTrue( n.getType() == libsbml.AST_CONSTANT_E ) n.setType(libsbml.AST_NAME) n.setName( "False") self.assertEqual( True, n.isName() ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_CONSTANT_FALSE ) + self.assertTrue( n.getType() == libsbml.AST_CONSTANT_FALSE ) n.setType(libsbml.AST_NAME) n.setName( "Pi") self.assertEqual( True, n.isName() ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_CONSTANT_PI ) + self.assertTrue( n.getType() == libsbml.AST_CONSTANT_PI ) n.setType(libsbml.AST_NAME) n.setName( "True") self.assertEqual( True, n.isName() ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_CONSTANT_TRUE ) + self.assertTrue( n.getType() == libsbml.AST_CONSTANT_TRUE ) n.setType(libsbml.AST_NAME) n.setName( "Foo") self.assertEqual( True, n.isName() ) @@ -130,307 +130,307 @@ def test_ASTNode_canonicalizeConstants(self): def test_ASTNode_canonicalizeFunctions(self): n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "abs") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ABS ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ABS ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccos") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOS ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccosh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOSH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOSH ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccot") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOT ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOT ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccoth") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOTH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOTH ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccsc") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCSC ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSC ) n.setType(libsbml.AST_FUNCTION) n.setName( "arccsch") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCSCH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCSCH ) n.setType(libsbml.AST_FUNCTION) n.setName( "arcsec") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCSEC ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSEC ) n.setType(libsbml.AST_FUNCTION) n.setName( "arcsech") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCSECH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSECH ) n.setType(libsbml.AST_FUNCTION) n.setName( "arcsin") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCSIN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN ) n.setType(libsbml.AST_FUNCTION) n.setName( "arcsinh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCSINH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSINH ) n.setType(libsbml.AST_FUNCTION) n.setName( "arctan") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCTAN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN ) n.setType(libsbml.AST_FUNCTION) n.setName( "arctanh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCTANH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTANH ) n.setType(libsbml.AST_FUNCTION) n.setName( "ceiling") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_CEILING ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING ) n.setType(libsbml.AST_FUNCTION) n.setName( "cos") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_COS ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_COS ) n.setType(libsbml.AST_FUNCTION) n.setName( "cosh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_COSH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_COSH ) n.setType(libsbml.AST_FUNCTION) n.setName( "cot") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_COT ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_COT ) n.setType(libsbml.AST_FUNCTION) n.setName( "coth") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_COTH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_COTH ) n.setType(libsbml.AST_FUNCTION) n.setName( "csc") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_CSC ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_CSC ) n.setType(libsbml.AST_FUNCTION) n.setName( "csch") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_CSCH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_CSCH ) n.setType(libsbml.AST_FUNCTION) n.setName( "exp") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_EXP ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_EXP ) n.setType(libsbml.AST_FUNCTION) n.setName( "factorial") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_FACTORIAL ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_FACTORIAL ) n.setType(libsbml.AST_FUNCTION) n.setName( "floor") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_FLOOR ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_FLOOR ) n.setType(libsbml.AST_FUNCTION) n.setName( "lambda") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_LAMBDA ) + self.assertTrue( n.getType() == libsbml.AST_LAMBDA ) n.setType(libsbml.AST_FUNCTION) n.setName( "ln") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_LN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_LN ) n.setType(libsbml.AST_FUNCTION) n.setName( "log") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG ) n.setType(libsbml.AST_FUNCTION) n.setName( "piecewise") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_PIECEWISE ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_PIECEWISE ) n.setType(libsbml.AST_FUNCTION) n.setName( "power") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_POWER ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER ) n.setType(libsbml.AST_FUNCTION) n.setName( "root") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ROOT ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT ) n.setType(libsbml.AST_FUNCTION) n.setName( "sec") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_SEC ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_SEC ) n.setType(libsbml.AST_FUNCTION) n.setName( "sech") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_SECH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_SECH ) n.setType(libsbml.AST_FUNCTION) n.setName( "sin") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_SIN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_SIN ) n.setType(libsbml.AST_FUNCTION) n.setName( "sinh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_SINH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_SINH ) n.setType(libsbml.AST_FUNCTION) n.setName( "tan") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_TAN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_TAN ) n.setType(libsbml.AST_FUNCTION) n.setName( "tanh") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_TANH ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_TANH ) n.setType(libsbml.AST_FUNCTION) n.setName( "Foo") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_canonicalizeFunctionsL1(self): n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "acos") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOS ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOS ) n.setType(libsbml.AST_FUNCTION) n.setName( "asin") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCSIN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCSIN ) n.setType(libsbml.AST_FUNCTION) n.setName( "atan") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCTAN ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCTAN ) n.setType(libsbml.AST_FUNCTION) n.setName( "ceil") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_CEILING ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_CEILING ) n.setType(libsbml.AST_FUNCTION) n.setName( "pow") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_POWER ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "log") c = libsbml.ASTNode() c.setName( "x") n.addChild(c) - self.assert_( n.getType() == libsbml.AST_FUNCTION ) - self.assert_( n.getNumChildren() == 1 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getNumChildren() == 1 ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_LN ) - self.assert_( n.getNumChildren() == 1 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_LN ) + self.assertTrue( n.getNumChildren() == 1 ) n.setType(libsbml.AST_FUNCTION) c = libsbml.ASTNode() c.setName( "y") n.addChild(c) - self.assert_( n.getType() == libsbml.AST_FUNCTION ) - self.assert_( n.getNumChildren() == 2 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getNumChildren() == 2 ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "log10") c = libsbml.ASTNode() c.setName( "x") n.addChild(c) - self.assert_( n.getType() == libsbml.AST_FUNCTION ) - self.assert_( n.getNumChildren() == 1 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getNumChildren() == 1 ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( n.getNumChildren() == 2 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( n.getNumChildren() == 2 ) c = n.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 10 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 10 ) c = n.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "sqr") c = libsbml.ASTNode() c.setName( "x") n.addChild(c) - self.assert_( n.getType() == libsbml.AST_FUNCTION ) - self.assert_( n.getNumChildren() == 1 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getNumChildren() == 1 ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_POWER ) - self.assert_( n.getNumChildren() == 2 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_POWER ) + self.assertTrue( n.getNumChildren() == 2 ) c = n.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) c = n.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "sqrt") c = libsbml.ASTNode() c.setName( "x") n.addChild(c) - self.assert_( n.getType() == libsbml.AST_FUNCTION ) - self.assert_( n.getNumChildren() == 1 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getNumChildren() == 1 ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_FUNCTION_ROOT ) - self.assert_( n.getNumChildren() == 2 ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ROOT ) + self.assertTrue( n.getNumChildren() == 2 ) c = n.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) c = n.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_canonicalizeLogical(self): n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "and") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_LOGICAL_AND ) + self.assertTrue( n.getType() == libsbml.AST_LOGICAL_AND ) n.setType(libsbml.AST_FUNCTION) n.setName( "not") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_LOGICAL_NOT ) + self.assertTrue( n.getType() == libsbml.AST_LOGICAL_NOT ) n.setType(libsbml.AST_FUNCTION) n.setName( "or") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_LOGICAL_OR ) + self.assertTrue( n.getType() == libsbml.AST_LOGICAL_OR ) n.setType(libsbml.AST_FUNCTION) n.setName( "xor") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_LOGICAL_XOR ) + self.assertTrue( n.getType() == libsbml.AST_LOGICAL_XOR ) n.setType(libsbml.AST_FUNCTION) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -438,34 +438,34 @@ def test_ASTNode_canonicalizeLogical(self): def test_ASTNode_canonicalizeRelational(self): n = libsbml.ASTNode(libsbml.AST_FUNCTION) n.setName( "eq") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_EQ ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_EQ ) n.setType(libsbml.AST_FUNCTION) n.setName( "geq") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_GEQ ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_GEQ ) n.setType(libsbml.AST_FUNCTION) n.setName( "gt") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_GT ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_GT ) n.setType(libsbml.AST_FUNCTION) n.setName( "leq") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_LEQ ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_LEQ ) n.setType(libsbml.AST_FUNCTION) n.setName( "lt") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_LT ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_LT ) n.setType(libsbml.AST_FUNCTION) n.setName( "neq") - self.assert_( n.getType() == libsbml.AST_FUNCTION ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION ) n.canonicalize() - self.assert_( n.getType() == libsbml.AST_RELATIONAL_NEQ ) + self.assertTrue( n.getType() == libsbml.AST_RELATIONAL_NEQ ) n.setType(libsbml.AST_FUNCTION) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -481,38 +481,38 @@ def test_ASTNode_children(self): right2.setValue(3) parent.addChild(left) parent.addChild(right) - self.assert_( parent.getNumChildren() == 2 ) - self.assert_( left.getNumChildren() == 0 ) - self.assert_( right.getNumChildren() == 0 ) - self.assert_( parent.getLeftChild() == left ) - self.assert_( parent.getRightChild() == right ) - self.assert_( parent.getChild(0) == left ) - self.assert_( parent.getChild(1) == right ) - self.assert_( parent.getChild(2) == None ) + self.assertTrue( parent.getNumChildren() == 2 ) + self.assertTrue( left.getNumChildren() == 0 ) + self.assertTrue( right.getNumChildren() == 0 ) + self.assertTrue( parent.getLeftChild() == left ) + self.assertTrue( parent.getRightChild() == right ) + self.assertTrue( parent.getChild(0) == left ) + self.assertTrue( parent.getChild(1) == right ) + self.assertTrue( parent.getChild(2) == None ) parent.addChild(right2) - self.assert_( parent.getNumChildren() == 3 ) - self.assert_( left.getNumChildren() == 0 ) - self.assert_( right.getNumChildren() == 0 ) - self.assert_( right2.getNumChildren() == 0 ) - self.assert_( parent.getLeftChild() == left ) - self.assert_( parent.getRightChild() == right2 ) - self.assert_( parent.getChild(0) == left ) - self.assert_( parent.getChild(1) == right ) - self.assert_( parent.getChild(2) == right2 ) - self.assert_( parent.getChild(3) == None ) + self.assertTrue( parent.getNumChildren() == 3 ) + self.assertTrue( left.getNumChildren() == 0 ) + self.assertTrue( right.getNumChildren() == 0 ) + self.assertTrue( right2.getNumChildren() == 0 ) + self.assertTrue( parent.getLeftChild() == left ) + self.assertTrue( parent.getRightChild() == right2 ) + self.assertTrue( parent.getChild(0) == left ) + self.assertTrue( parent.getChild(1) == right ) + self.assertTrue( parent.getChild(2) == right2 ) + self.assertTrue( parent.getChild(3) == None ) _dummyList = [ parent ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_create(self): n = libsbml.ASTNode() ea = libsbml.EventAssignment(2,4) - self.assert_( n.getType() == libsbml.AST_UNKNOWN ) - self.assert_( n.getCharacter() == "\0" ) - self.assert_( n.getName() == None ) - self.assert_( n.getInteger() == 0 ) - self.assert_( n.getExponent() == 0 ) - self.assert_( n.getNumChildren() == 0 ) - self.assert_( n.getParentSBMLObject() == None ) + self.assertTrue( n.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( n.getCharacter() == "\0" ) + self.assertTrue( n.getName() == None ) + self.assertTrue( n.getInteger() == 0 ) + self.assertTrue( n.getExponent() == 0 ) + self.assertTrue( n.getNumChildren() == 0 ) + self.assertTrue( n.getParentSBMLObject() == None ) _dummyList = [ ea ]; _dummyList[:] = []; del _dummyList _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -524,32 +524,32 @@ def test_ASTNode_deepCopy_1(self): node.addChild(libsbml.ASTNode()) node.getLeftChild().setValue(1) node.getRightChild().setValue(2) - self.assert_( node.getType() == libsbml.AST_PLUS ) - self.assert_( node.getCharacter() == '+' ) - self.assert_( node.getNumChildren() == 2 ) + self.assertTrue( node.getType() == libsbml.AST_PLUS ) + self.assertTrue( node.getCharacter() == '+' ) + self.assertTrue( node.getNumChildren() == 2 ) child = node.getLeftChild() - self.assert_( child.getType() == libsbml.AST_INTEGER ) - self.assert_( child.getInteger() == 1 ) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue( child.getType() == libsbml.AST_INTEGER ) + self.assertTrue( child.getInteger() == 1 ) + self.assertTrue( child.getNumChildren() == 0 ) child = node.getRightChild() - self.assert_( child.getType() == libsbml.AST_INTEGER ) - self.assert_( child.getInteger() == 2 ) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue( child.getType() == libsbml.AST_INTEGER ) + self.assertTrue( child.getInteger() == 2 ) + self.assertTrue( child.getNumChildren() == 0 ) copy = node.deepCopy() - self.assert_( copy != node ) - self.assert_( copy.getType() == libsbml.AST_PLUS ) - self.assert_( copy.getCharacter() == '+' ) - self.assert_( copy.getNumChildren() == 2 ) + self.assertTrue( copy != node ) + self.assertTrue( copy.getType() == libsbml.AST_PLUS ) + self.assertTrue( copy.getCharacter() == '+' ) + self.assertTrue( copy.getNumChildren() == 2 ) child = copy.getLeftChild() - self.assert_( child != node.getLeftChild() ) - self.assert_( child.getType() == libsbml.AST_INTEGER ) - self.assert_( child.getInteger() == 1 ) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue( child != node.getLeftChild() ) + self.assertTrue( child.getType() == libsbml.AST_INTEGER ) + self.assertTrue( child.getInteger() == 1 ) + self.assertTrue( child.getNumChildren() == 0 ) child = copy.getRightChild() - self.assert_( child != node.getRightChild() ) - self.assert_( child.getType() == libsbml.AST_INTEGER ) - self.assert_( child.getInteger() == 2 ) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue( child != node.getRightChild() ) + self.assertTrue( child.getType() == libsbml.AST_INTEGER ) + self.assertTrue( child.getInteger() == 2 ) + self.assertTrue( child.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ copy ]; _dummyList[:] = []; del _dummyList pass @@ -557,14 +557,14 @@ def test_ASTNode_deepCopy_1(self): def test_ASTNode_deepCopy_2(self): node = libsbml.ASTNode() node.setName( "Foo") - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_(( "Foo" == node.getName() )) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue(( "Foo" == node.getName() )) + self.assertTrue( node.getNumChildren() == 0 ) copy = node.deepCopy() - self.assert_( copy != node ) - self.assert_( copy.getType() == libsbml.AST_NAME ) - self.assert_(( "Foo" == copy.getName() )) - self.assert_( copy.getNumChildren() == 0 ) + self.assertTrue( copy != node ) + self.assertTrue( copy.getType() == libsbml.AST_NAME ) + self.assertTrue(( "Foo" == copy.getName() )) + self.assertTrue( copy.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ copy ]; _dummyList[:] = []; del _dummyList pass @@ -572,14 +572,14 @@ def test_ASTNode_deepCopy_2(self): def test_ASTNode_deepCopy_3(self): node = libsbml.ASTNode(libsbml.AST_FUNCTION) node.setName( "Foo") - self.assert_( node.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "Foo" == node.getName() )) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "Foo" == node.getName() )) + self.assertTrue( node.getNumChildren() == 0 ) copy = node.deepCopy() - self.assert_( copy != node ) - self.assert_( copy.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "Foo" == copy.getName() )) - self.assert_( copy.getNumChildren() == 0 ) + self.assertTrue( copy != node ) + self.assertTrue( copy.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "Foo" == copy.getName() )) + self.assertTrue( copy.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ copy ]; _dummyList[:] = []; del _dummyList pass @@ -587,14 +587,14 @@ def test_ASTNode_deepCopy_3(self): def test_ASTNode_deepCopy_4(self): node = libsbml.ASTNode(libsbml.AST_FUNCTION_ABS) node.setName( "ABS") - self.assert_( node.getType() == libsbml.AST_FUNCTION_ABS ) - self.assert_(( "ABS" == node.getName() )) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION_ABS ) + self.assertTrue(( "ABS" == node.getName() )) + self.assertTrue( node.getNumChildren() == 0 ) copy = node.deepCopy() - self.assert_( copy != node ) - self.assert_( copy.getType() == libsbml.AST_FUNCTION_ABS ) - self.assert_(( "ABS" == copy.getName() )) - self.assert_( copy.getNumChildren() == 0 ) + self.assertTrue( copy != node ) + self.assertTrue( copy.getType() == libsbml.AST_FUNCTION_ABS ) + self.assertTrue(( "ABS" == copy.getName() )) + self.assertTrue( copy.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ copy ]; _dummyList[:] = []; del _dummyList pass @@ -603,19 +603,19 @@ def test_ASTNode_freeName(self): node = libsbml.ASTNode() i = 0 i = node.setName( "a") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "a" == libsbml.formulaToString(node) )) - self.assert_(( "a" == node.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "a" == libsbml.formulaToString(node) )) + self.assertTrue(( "a" == node.getName() )) i = node.freeName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getName() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getName() == None ) i = node.freeName() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( node.getName() == None ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( node.getName() == None ) node.setType(libsbml.AST_UNKNOWN) i = node.freeName() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( node.getName() == None ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( node.getName() == None ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -626,77 +626,77 @@ def test_ASTNode_free_NULL(self): def test_ASTNode_getName(self): n = libsbml.ASTNode() n.setName( "foo") - self.assert_(( "foo" == n.getName() )) + self.assertTrue(( "foo" == n.getName() )) n.setType(libsbml.AST_NAME_TIME) - self.assert_(( "foo" == n.getName() )) + self.assertTrue(( "foo" == n.getName() )) n.setName(None) - self.assert_( n.getName() == None ) + self.assertTrue( n.getName() == None ) n.setType(libsbml.AST_CONSTANT_E) - self.assert_(( "exponentiale" == n.getName() )) + self.assertTrue(( "exponentiale" == n.getName() )) n.setType(libsbml.AST_CONSTANT_FALSE) - self.assert_(( "false" == n.getName() )) + self.assertTrue(( "false" == n.getName() )) n.setType(libsbml.AST_CONSTANT_PI) - self.assert_(( "pi" == n.getName() )) + self.assertTrue(( "pi" == n.getName() )) n.setType(libsbml.AST_CONSTANT_TRUE) - self.assert_(( "true" == n.getName() )) + self.assertTrue(( "true" == n.getName() )) n.setType(libsbml.AST_LAMBDA) - self.assert_(( "lambda" == n.getName() )) + self.assertTrue(( "lambda" == n.getName() )) n.setType(libsbml.AST_FUNCTION) n.setName( "f") - self.assert_(( "f" == n.getName() )) + self.assertTrue(( "f" == n.getName() )) n.setType(libsbml.AST_FUNCTION_DELAY) - self.assert_(( "f" == n.getName() )) + self.assertTrue(( "f" == n.getName() )) n.setName(None) - self.assert_(( "delay" == n.getName() )) + self.assertTrue(( "delay" == n.getName() )) n.setType(libsbml.AST_FUNCTION) - self.assert_( n.getName() == None ) + self.assertTrue( n.getName() == None ) n.setType(libsbml.AST_FUNCTION_ABS) - self.assert_(( "abs" == n.getName() )) + self.assertTrue(( "abs" == n.getName() )) n.setType(libsbml.AST_FUNCTION_ARCCOS) - self.assert_(( "arccos" == n.getName() )) + self.assertTrue(( "arccos" == n.getName() )) n.setType(libsbml.AST_FUNCTION_TAN) - self.assert_(( "tan" == n.getName() )) + self.assertTrue(( "tan" == n.getName() )) n.setType(libsbml.AST_FUNCTION_TANH) - self.assert_(( "tanh" == n.getName() )) + self.assertTrue(( "tanh" == n.getName() )) n.setType(libsbml.AST_LOGICAL_AND) - self.assert_(( "and" == n.getName() )) + self.assertTrue(( "and" == n.getName() )) n.setType(libsbml.AST_LOGICAL_NOT) - self.assert_(( "not" == n.getName() )) + self.assertTrue(( "not" == n.getName() )) n.setType(libsbml.AST_LOGICAL_OR) - self.assert_(( "or" == n.getName() )) + self.assertTrue(( "or" == n.getName() )) n.setType(libsbml.AST_LOGICAL_XOR) - self.assert_(( "xor" == n.getName() )) + self.assertTrue(( "xor" == n.getName() )) n.setType(libsbml.AST_RELATIONAL_EQ) - self.assert_(( "eq" == n.getName() )) + self.assertTrue(( "eq" == n.getName() )) n.setType(libsbml.AST_RELATIONAL_GEQ) - self.assert_(( "geq" == n.getName() )) + self.assertTrue(( "geq" == n.getName() )) n.setType(libsbml.AST_RELATIONAL_LT) - self.assert_(( "lt" == n.getName() )) + self.assertTrue(( "lt" == n.getName() )) n.setType(libsbml.AST_RELATIONAL_NEQ) - self.assert_(( "neq" == n.getName() )) + self.assertTrue(( "neq" == n.getName() )) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_getPrecedence(self): n = libsbml.ASTNode() n.setType(libsbml.AST_PLUS) - self.assert_( n.getPrecedence() == 2 ) + self.assertTrue( n.getPrecedence() == 2 ) n.setType(libsbml.AST_MINUS) - self.assert_( n.getPrecedence() == 2 ) + self.assertTrue( n.getPrecedence() == 2 ) n.setType(libsbml.AST_TIMES) - self.assert_( n.getPrecedence() == 3 ) + self.assertTrue( n.getPrecedence() == 3 ) n.setType(libsbml.AST_DIVIDE) - self.assert_( n.getPrecedence() == 3 ) + self.assertTrue( n.getPrecedence() == 3 ) n.setType(libsbml.AST_POWER) - self.assert_( n.getPrecedence() == 4 ) + self.assertTrue( n.getPrecedence() == 4 ) n.setType(libsbml.AST_MINUS) n.addChild(libsbml.ASTNode(libsbml.AST_NAME)) - self.assert_( n.isUMinus() == True ) - self.assert_( n.getPrecedence() == 5 ) + self.assertTrue( n.isUMinus() == True ) + self.assertTrue( n.getPrecedence() == 5 ) n.setType(libsbml.AST_NAME) - self.assert_( n.getPrecedence() == 6 ) + self.assertTrue( n.getPrecedence() == 6 ) n.setType(libsbml.AST_FUNCTION) - self.assert_( n.getPrecedence() == 6 ) + self.assertTrue( n.getPrecedence() == 6 ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -704,14 +704,14 @@ def test_ASTNode_getReal(self): n = libsbml.ASTNode() n.setType(libsbml.AST_REAL) n.setValue(1.6) - self.assert_( n.getReal() == 1.6 ) + self.assertTrue( n.getReal() == 1.6 ) n.setType(libsbml.AST_REAL_E) n.setValue(12.3,3) val = abs(n.getReal() - 12300.0) - self.assert_( val < DBL_EPSILON ) + self.assertTrue( val < DBL_EPSILON ) n.setType(libsbml.AST_RATIONAL) n.setValue(1,2) - self.assert_( n.getReal() == 0.5 ) + self.assertTrue( n.getReal() == 0.5 ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass @@ -730,74 +730,74 @@ def test_ASTNode_insertChild(self): node.addChild(c1) node.addChild(c2) node.addChild(c3) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(a, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(a, b, c)" == libsbml.formulaToString(node) )) newc.setName( "d") newc1.setName( "e") i = node.insertChild(1,newc) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 4 ) - self.assert_(( "and(a, d, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 4 ) + self.assertTrue(( "and(a, d, b, c)" == libsbml.formulaToString(node) )) i = node.insertChild(5,newc) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( node.getNumChildren() == 4 ) - self.assert_(( "and(a, d, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( node.getNumChildren() == 4 ) + self.assertTrue(( "and(a, d, b, c)" == libsbml.formulaToString(node) )) i = node.insertChild(2,newc1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 5 ) - self.assert_(( "and(a, d, e, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 5 ) + self.assertTrue(( "and(a, d, e, b, c)" == libsbml.formulaToString(node) )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_isLog10(self): n = libsbml.ASTNode() n.setType(libsbml.AST_FUNCTION) - self.assert_( n.isLog10() == False ) + self.assertTrue( n.isLog10() == False ) n.setType(libsbml.AST_FUNCTION_LOG) - self.assert_( n.isLog10() == False ) + self.assertTrue( n.isLog10() == False ) c = libsbml.ASTNode() n.addChild(c) c.setValue(10) - self.assert_( n.isLog10() == False ) + self.assertTrue( n.isLog10() == False ) n.addChild(libsbml.ASTNode()) - self.assert_( n.isLog10() == True ) + self.assertTrue( n.isLog10() == True ) c.setValue(2) - self.assert_( n.isLog10() == False ) + self.assertTrue( n.isLog10() == False ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_isSqrt(self): n = libsbml.ASTNode() n.setType(libsbml.AST_FUNCTION) - self.assert_( n.isSqrt() == False ) + self.assertTrue( n.isSqrt() == False ) n.setType(libsbml.AST_FUNCTION_ROOT) - self.assert_( n.isSqrt() == False ) + self.assertTrue( n.isSqrt() == False ) c = libsbml.ASTNode() n.addChild(c) c.setValue(2) - self.assert_( n.isSqrt() == False ) + self.assertTrue( n.isSqrt() == False ) n.addChild(libsbml.ASTNode()) - self.assert_( n.isSqrt() == True ) + self.assertTrue( n.isSqrt() == True ) c.setValue(3) - self.assert_( n.isSqrt() == False ) + self.assertTrue( n.isSqrt() == False ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_isUMinus(self): n = libsbml.ASTNode() n.setType(libsbml.AST_MINUS) - self.assert_( n.isUMinus() == False ) + self.assertTrue( n.isUMinus() == False ) n.addChild(libsbml.ASTNode(libsbml.AST_NAME)) - self.assert_( n.isUMinus() == True ) + self.assertTrue( n.isUMinus() == True ) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_no_children(self): node = libsbml.ASTNode() - self.assert_( node.getNumChildren() == 0 ) - self.assert_( node.getLeftChild() == None ) - self.assert_( node.getRightChild() == None ) - self.assert_( node.getChild(0) == None ) + self.assertTrue( node.getNumChildren() == 0 ) + self.assertTrue( node.getLeftChild() == None ) + self.assertTrue( node.getRightChild() == None ) + self.assertTrue( node.getChild(0) == None ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -805,11 +805,11 @@ def test_ASTNode_one_child(self): node = libsbml.ASTNode() child = libsbml.ASTNode() node.addChild(child) - self.assert_( node.getNumChildren() == 1 ) - self.assert_( node.getLeftChild() == child ) - self.assert_( node.getRightChild() == None ) - self.assert_( node.getChild(0) == child ) - self.assert_( node.getChild(1) == None ) + self.assertTrue( node.getNumChildren() == 1 ) + self.assertTrue( node.getLeftChild() == child ) + self.assertTrue( node.getRightChild() == None ) + self.assertTrue( node.getChild(0) == child ) + self.assertTrue( node.getChild(1) == None ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -824,16 +824,16 @@ def test_ASTNode_prependChild1(self): c2.setName( "b") node.addChild(c1) node.addChild(c2) - self.assert_( node.getNumChildren() == 2 ) - self.assert_(( "and(a, b)" == libsbml.formulaToString(node) )) + self.assertTrue( node.getNumChildren() == 2 ) + self.assertTrue(( "and(a, b)" == libsbml.formulaToString(node) )) c1_1.setName( "d") i = node.prependChild(c1_1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(d, a, b)" == libsbml.formulaToString(node) )) - self.assert_(( "d" == node.getChild(0).getName() )) - self.assert_(( "a" == node.getChild(1).getName() )) - self.assert_(( "b" == node.getChild(2).getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(d, a, b)" == libsbml.formulaToString(node) )) + self.assertTrue(( "d" == node.getChild(0).getName() )) + self.assertTrue(( "a" == node.getChild(1).getName() )) + self.assertTrue(( "b" == node.getChild(2).getName() )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -847,16 +847,16 @@ def test_ASTNode_removeChild(self): c2.setName( "foo2") node.addChild(c1) node.addChild(c2) - self.assert_( node.getNumChildren() == 2 ) + self.assertTrue( node.getNumChildren() == 2 ) i = node.removeChild(0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 1 ) i = node.removeChild(1) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( node.getNumChildren() == 1 ) i = node.removeChild(0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -874,230 +874,230 @@ def test_ASTNode_replaceChild(self): node.addChild(c1) node.addChild(c2) node.addChild(c3) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(a, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(a, b, c)" == libsbml.formulaToString(node) )) newc.setName( "d") i = node.replaceChild(0,newc) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(d, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(d, b, c)" == libsbml.formulaToString(node) )) i = node.replaceChild(3,newc) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(d, b, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(d, b, c)" == libsbml.formulaToString(node) )) i = node.replaceChild(1,c1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 3 ) - self.assert_(( "and(d, a, c)" == libsbml.formulaToString(node) )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 3 ) + self.assertTrue(( "and(d, a, c)" == libsbml.formulaToString(node) )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setCharacter(self): node = libsbml.ASTNode() node.setName( "foo") - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_(( "foo" == node.getName() )) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue(( "foo" == node.getName() )) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '+') - self.assert_( node.getType() == libsbml.AST_PLUS ) - self.assert_( node.getCharacter() == '+' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_PLUS ) + self.assertTrue( node.getCharacter() == '+' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '-') - self.assert_( node.getType() == libsbml.AST_MINUS ) - self.assert_( node.getCharacter() == '-' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_MINUS ) + self.assertTrue( node.getCharacter() == '-' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '*') - self.assert_( node.getType() == libsbml.AST_TIMES ) - self.assert_( node.getCharacter() == '*' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_TIMES ) + self.assertTrue( node.getCharacter() == '*' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '/') - self.assert_( node.getType() == libsbml.AST_DIVIDE ) - self.assert_( node.getCharacter() == '/' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( node.getCharacter() == '/' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '^') - self.assert_( node.getType() == libsbml.AST_POWER ) - self.assert_( node.getCharacter() == '^' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_POWER ) + self.assertTrue( node.getCharacter() == '^' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setCharacter( '$') - self.assert_( node.getType() == libsbml.AST_UNKNOWN ) - self.assert_( node.getCharacter() == '$' ) - self.assert_( node.getName() == None ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( node.getCharacter() == '$' ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setInteger(self): node = libsbml.ASTNode() node.setName( "foo") - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == node.getName() )) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == node.getName() )) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setValue(3.2) - self.assert_( node.getType() == libsbml.AST_REAL ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getName() == None ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getReal() == 3.2 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_REAL ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getReal() == 3.2 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setValue(321) - self.assert_( node.getType() == libsbml.AST_INTEGER ) - self.assert_( node.getInteger() == 321 ) - self.assert_( node.getName() == None ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_INTEGER ) + self.assertTrue( node.getInteger() == 321 ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setName(self): name = "foo"; node = libsbml.ASTNode() - self.assert_( node.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( node.getType() == libsbml.AST_UNKNOWN ) node.setName(name) - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_(( name == node.getName() )) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue(( name == node.getName() )) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) if (node.getName() == name): pass node.setName(None) - self.assert_( node.getType() == libsbml.AST_NAME ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) if (node.getName() != None): pass node.setType(libsbml.AST_FUNCTION_COS) - self.assert_( node.getType() == libsbml.AST_FUNCTION_COS ) - self.assert_(( "cos" == node.getName() )) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION_COS ) + self.assertTrue(( "cos" == node.getName() )) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) node.setType(libsbml.AST_PLUS) node.setName(name) - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_(( name == node.getName() )) - self.assert_( node.getCharacter() == '+' ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getReal() == 0 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue(( name == node.getName() )) + self.assertTrue( node.getCharacter() == '+' ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getReal() == 0 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setName_override(self): node = libsbml.ASTNode(libsbml.AST_FUNCTION_SIN) - self.assert_(( "sin" == node.getName() )) - self.assert_( node.getType() == libsbml.AST_FUNCTION_SIN ) + self.assertTrue(( "sin" == node.getName() )) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION_SIN ) node.setName( "MySinFunc") - self.assert_(( "MySinFunc" == node.getName() )) - self.assert_( node.getType() == libsbml.AST_FUNCTION_SIN ) + self.assertTrue(( "MySinFunc" == node.getName() )) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION_SIN ) node.setName(None) - self.assert_(( "sin" == node.getName() )) - self.assert_( node.getType() == libsbml.AST_FUNCTION_SIN ) + self.assertTrue(( "sin" == node.getName() )) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION_SIN ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setReal(self): node = libsbml.ASTNode() node.setName( "foo") - self.assert_( node.getType() == libsbml.AST_NAME ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) node.setValue(32.1) - self.assert_( node.getType() == libsbml.AST_REAL ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getName() == None ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getReal() == 32.1 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 1 ) - self.assert_( node.getMantissa() == 32.1 ) + self.assertTrue( node.getType() == libsbml.AST_REAL ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getReal() == 32.1 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 1 ) + self.assertTrue( node.getMantissa() == 32.1 ) node.setValue(45,90) - self.assert_( node.getType() == libsbml.AST_RATIONAL ) - self.assert_( node.getInteger() == 45 ) - self.assert_( node.getName() == None ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getReal() == 0.5 ) - self.assert_( node.getExponent() == 0 ) - self.assert_( node.getDenominator() == 90 ) - self.assert_( node.getMantissa() == 0 ) + self.assertTrue( node.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( node.getInteger() == 45 ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getReal() == 0.5 ) + self.assertTrue( node.getExponent() == 0 ) + self.assertTrue( node.getDenominator() == 90 ) + self.assertTrue( node.getMantissa() == 0 ) node.setValue(32.0,4) - self.assert_( node.getType() == libsbml.AST_REAL_E ) - self.assert_( node.getInteger() == 0 ) - self.assert_( node.getName() == None ) - self.assert_( node.getCharacter() == "\0" ) - self.assert_( node.getReal() == 320000 ) - self.assert_( node.getExponent() == 4 ) - self.assert_( node.getDenominator() == 1 ) - self.assert_( node.getMantissa() == 32 ) + self.assertTrue( node.getType() == libsbml.AST_REAL_E ) + self.assertTrue( node.getInteger() == 0 ) + self.assertTrue( node.getName() == None ) + self.assertTrue( node.getCharacter() == "\0" ) + self.assertTrue( node.getReal() == 320000 ) + self.assertTrue( node.getExponent() == 4 ) + self.assertTrue( node.getDenominator() == 1 ) + self.assertTrue( node.getMantissa() == 32 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_ASTNode_setType(self): node = libsbml.ASTNode() node.setName( "foo") - self.assert_( node.getType() == libsbml.AST_NAME ) + self.assertTrue( node.getType() == libsbml.AST_NAME ) node.setType(libsbml.AST_FUNCTION) - self.assert_( node.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "foo" == node.getName() )) + self.assertTrue( node.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "foo" == node.getName() )) node.setType(libsbml.AST_NAME) - self.assert_( node.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == node.getName() )) + self.assertTrue( node.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == node.getName() )) node.setType(libsbml.AST_INTEGER) - self.assert_( node.getType() == libsbml.AST_INTEGER ) + self.assertTrue( node.getType() == libsbml.AST_INTEGER ) node.setType(libsbml.AST_REAL) - self.assert_( node.getType() == libsbml.AST_REAL ) + self.assertTrue( node.getType() == libsbml.AST_REAL ) node.setType(libsbml.AST_UNKNOWN) - self.assert_( node.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( node.getType() == libsbml.AST_UNKNOWN ) node.setType(libsbml.AST_PLUS) - self.assert_( node.getType() == libsbml.AST_PLUS ) - self.assert_( node.getCharacter() == '+' ) + self.assertTrue( node.getType() == libsbml.AST_PLUS ) + self.assertTrue( node.getCharacter() == '+' ) node.setType(libsbml.AST_MINUS) - self.assert_( node.getType() == libsbml.AST_MINUS ) - self.assert_( node.getCharacter() == '-' ) + self.assertTrue( node.getType() == libsbml.AST_MINUS ) + self.assertTrue( node.getCharacter() == '-' ) node.setType(libsbml.AST_TIMES) - self.assert_( node.getType() == libsbml.AST_TIMES ) - self.assert_( node.getCharacter() == '*' ) + self.assertTrue( node.getType() == libsbml.AST_TIMES ) + self.assertTrue( node.getCharacter() == '*' ) node.setType(libsbml.AST_DIVIDE) - self.assert_( node.getType() == libsbml.AST_DIVIDE ) - self.assert_( node.getCharacter() == '/' ) + self.assertTrue( node.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( node.getCharacter() == '/' ) node.setType(libsbml.AST_POWER) - self.assert_( node.getType() == libsbml.AST_POWER ) - self.assert_( node.getCharacter() == '^' ) + self.assertTrue( node.getType() == libsbml.AST_POWER ) + self.assertTrue( node.getCharacter() == '^' ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -1114,21 +1114,21 @@ def test_ASTNode_swapChildren(self): c2.setName( "b") node.addChild(c1) node.addChild(c2) - self.assert_( node.getNumChildren() == 2 ) - self.assert_(( "and(a, b)" == libsbml.formulaToString(node) )) + self.assertTrue( node.getNumChildren() == 2 ) + self.assertTrue(( "and(a, b)" == libsbml.formulaToString(node) )) node_1.setType(libsbml.AST_LOGICAL_AND) c1_1.setName( "d") c2_1.setName( "f") node_1.addChild(c1_1) node_1.addChild(c2_1) - self.assert_( node_1.getNumChildren() == 2 ) - self.assert_(( "and(d, f)" == libsbml.formulaToString(node_1) )) + self.assertTrue( node_1.getNumChildren() == 2 ) + self.assertTrue(( "and(d, f)" == libsbml.formulaToString(node_1) )) i = node.swapChildren(node_1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 2 ) - self.assert_(( "and(d, f)" == libsbml.formulaToString(node) )) - self.assert_( node_1.getNumChildren() == 2 ) - self.assert_(( "and(a, b)" == libsbml.formulaToString(node_1) )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 2 ) + self.assertTrue(( "and(d, f)" == libsbml.formulaToString(node) )) + self.assertTrue( node_1.getNumChildren() == 2 ) + self.assertTrue(( "and(a, b)" == libsbml.formulaToString(node_1) )) _dummyList = [ node_1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -1138,21 +1138,21 @@ def test_ASTNode_units(self): n.setType(libsbml.AST_REAL) n.setValue(1.6) i = n.setUnits( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n.isSetUnits() == True ) - self.assert_(( "mole" == n.getUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n.isSetUnits() == True ) + self.assertTrue(( "mole" == n.getUnits() )) i = n.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n.isSetUnits() == False ) - self.assert_(( "" == n.getUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n.isSetUnits() == False ) + self.assertTrue(( "" == n.getUnits() )) i = n.setUnits( "1mole") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( n.isSetUnits() == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( n.isSetUnits() == False ) n.setType(libsbml.AST_FUNCTION) i = n.setUnits( "mole") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( n.isSetUnits() == False ) - self.assert_(( "" == n.getUnits() )) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( n.isSetUnits() == False ) + self.assertTrue(( "" == n.getUnits() )) _dummyList = [ n ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/math/TestL3FormulaParserC.py b/src/bindings/python/test/math/TestL3FormulaParserC.py index 4d1e708161..90ae38f44a 100644 --- a/src/bindings/python/test/math/TestL3FormulaParserC.py +++ b/src/bindings/python/test/math/TestL3FormulaParserC.py @@ -64,542 +64,542 @@ class TestL3FormulaParserC(unittest.TestCase): def test_SBML_C_parseL3Formula_1(self): r = libsbml.parseL3Formula("1") - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == 1 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == 1 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_10(self): r = libsbml.parseL3Formula("1 + -2e100 / 3") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_DIVIDE ) - self.assert_( c.getCharacter() == '/' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( c.getCharacter() == '/' ) + self.assertTrue( c.getNumChildren() == 2 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getCharacter() == '-' ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getCharacter() == '-' ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL_E ) - self.assert_( c.getMantissa() == 2 ) - self.assert_( c.getExponent() == 100 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL_E ) + self.assertTrue( c.getMantissa() == 2 ) + self.assertTrue( c.getExponent() == 100 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_11(self): r = libsbml.parseL3Formula("1 - -foo / 3") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getCharacter() == '-' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getCharacter() == '-' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_DIVIDE ) - self.assert_( c.getCharacter() == '/' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( c.getCharacter() == '/' ) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getRightChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getCharacter() == '-' ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getCharacter() == '-' ) + self.assertTrue( c.getNumChildren() == 1 ) c = r.getRightChild().getLeftChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_12(self): r = libsbml.parseL3Formula("2 * foo^bar + 3.0") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_TIMES ) - self.assert_( c.getCharacter() == '*' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_TIMES ) + self.assertTrue( c.getCharacter() == '*' ) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 3.0 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 3.0 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_POWER ) - self.assert_( c.getCharacter() == '^' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_POWER ) + self.assertTrue( c.getCharacter() == '^' ) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getLeftChild().getRightChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "bar" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "bar" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_13(self): r = libsbml.parseL3Formula("foo()") - self.assert_( r.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "foo" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "foo" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_14(self): r = libsbml.parseL3Formula("foo(1)") - self.assert_( r.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "foo" == r.getName() )) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "foo" == r.getName() )) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_15(self): r = libsbml.parseL3Formula("foo(1, bar)") - self.assert_( r.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "foo" == r.getName() )) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "foo" == r.getName() )) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "bar" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "bar" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_16(self): r = libsbml.parseL3Formula("foo(1, bar, 2^-3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "foo" == r.getName() )) - self.assert_( r.getNumChildren() == 3 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "foo" == r.getName() )) + self.assertTrue( r.getNumChildren() == 3 ) c = r.getChild(0) - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getChild(1) - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "bar" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "bar" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getChild(2) - self.assert_( c.getType() == libsbml.AST_POWER ) - self.assert_( c.getCharacter() == '^' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_POWER ) + self.assertTrue( c.getCharacter() == '^' ) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getChild(2).getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getChild(2).getRightChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getCharacter() == '-' ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getCharacter() == '-' ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_17(self): r = libsbml.parseL3Formula("1//1") - self.assert_( r == None ) - self.assert_(( "Error when parsing input '1//1' at position 3: syntax error, unexpected '/'" == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '1//1' at position 3: syntax error, unexpected '/'" == libsbml.getLastParseL3Error() )) pass def test_SBML_C_parseL3Formula_18(self): r = libsbml.parseL3Formula("1+2*3 4") - self.assert_( r == None ) - self.assert_(( "Error when parsing input '1+2*3 4' at position 7: syntax error, unexpected integer" == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '1+2*3 4' at position 7: syntax error, unexpected integer" == libsbml.getLastParseL3Error() )) pass def test_SBML_C_parseL3Formula_2(self): r = libsbml.parseL3Formula("2.1") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( r.getReal() == 2.1 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( r.getReal() == 2.1 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_3(self): r = libsbml.parseL3Formula("2.1e5") - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == 2.1 ) - self.assert_( r.getExponent() == 5 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == 2.1 ) + self.assertTrue( r.getExponent() == 5 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_4(self): r = libsbml.parseL3Formula("foo") - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_5(self): r = libsbml.parseL3Formula("1 + foo") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "foo" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "foo" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_6(self): r = libsbml.parseL3Formula("1 + 2") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_7(self): r = libsbml.parseL3Formula("1 + 2 * 3") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_TIMES ) - self.assert_( c.getCharacter() == '*' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_TIMES ) + self.assertTrue( c.getCharacter() == '*' ) + self.assertTrue( c.getNumChildren() == 2 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_8(self): r = libsbml.parseL3Formula("(1 - 2) * 3") - self.assert_( r.getType() == libsbml.AST_TIMES ) - self.assert_( r.getCharacter() == '*' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_TIMES ) + self.assertTrue( r.getCharacter() == '*' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getCharacter() == '-' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getCharacter() == '-' ) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_9(self): r = libsbml.parseL3Formula("1 + -2 / 3") - self.assert_( r.getType() == libsbml.AST_PLUS ) - self.assert_( r.getCharacter() == '+' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_PLUS ) + self.assertTrue( r.getCharacter() == '+' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_DIVIDE ) - self.assert_( c.getCharacter() == '/' ) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( c.getCharacter() == '/' ) + self.assertTrue( c.getNumChildren() == 2 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getCharacter() == '-' ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getCharacter() == '-' ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_arguments(self): r = libsbml.parseL3Formula("sin(x,y)") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'sin(x,y)' at position 8: The function 'sin' takes exactly one argument, but 2 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'sin(x,y)' at position 8: The function 'sin' takes exactly one argument, but 2 were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("delay(x)") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'delay(x)' at position 8: The function 'delay' takes exactly two arguments, but 1 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'delay(x)' at position 8: The function 'delay' takes exactly two arguments, but 1 were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("piecewise()") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'piecewise()' at position 11: The function 'piecewise' takes at least one argument, but none were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'piecewise()' at position 11: The function 'piecewise' takes at least one argument, but none were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("gt(x)") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'gt(x)' at position 5: The function 'gt' takes at least two arguments, but 1 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'gt(x)' at position 5: The function 'gt' takes at least two arguments, but 1 were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("minus()") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'minus()' at position 7: The function 'minus' takes exactly one or two arguments, but 0 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'minus()' at position 7: The function 'minus' takes exactly one or two arguments, but 0 were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("root(x, y, z)") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'root(x, y, z)' at position 13: The function 'root' takes exactly one or two arguments, but 3 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'root(x, y, z)' at position 13: The function 'root' takes exactly one or two arguments, but 3 were found." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3Formula("power()") - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'power()' at position 7: The function 'power' takes exactly two arguments, but 0 were found." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'power()' at position 7: The function 'power' takes exactly two arguments, but 0 were found." == libsbml.getLastParseL3Error() )) pass def test_SBML_C_parseL3Formula_avogadrosettings(self): r = libsbml.parseL3Formula("avogadro") - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseAvogadroCsymbol(False) - self.assert_( settings.getParseAvogadroCsymbol() == False ) + self.assertTrue( settings.getParseAvogadroCsymbol() == False ) r = libsbml.parseL3FormulaWithSettings("avogadro", settings) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "avogadro" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "avogadro" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseAvogadroCsymbol(True) - self.assert_( settings.getParseAvogadroCsymbol() == True ) + self.assertTrue( settings.getParseAvogadroCsymbol() == True ) r = libsbml.parseL3FormulaWithSettings("avogadro", settings) - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_collapseminussettings1(self): r = libsbml.parseL3Formula("--4.4") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseCollapseMinus(True) - self.assert_( settings.getParseCollapseMinus() == True ) + self.assertTrue( settings.getParseCollapseMinus() == True ) r = libsbml.parseL3FormulaWithSettings("--4.4", settings) - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( r.getReal() == 4.4 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( r.getReal() == 4.4 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseCollapseMinus(False) - self.assert_( settings.getParseCollapseMinus() == False ) + self.assertTrue( settings.getParseCollapseMinus() == False ) r = libsbml.parseL3FormulaWithSettings("--4.4", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_collapseminussettings2(self): r = libsbml.parseL3Formula("--x") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseCollapseMinus(True) - self.assert_( settings.getParseCollapseMinus() == True ) + self.assertTrue( settings.getParseCollapseMinus() == True ) r = libsbml.parseL3FormulaWithSettings("--x", settings) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseCollapseMinus(False) - self.assert_( settings.getParseCollapseMinus() == False ) + self.assertTrue( settings.getParseCollapseMinus() == False ) r = libsbml.parseL3FormulaWithSettings("--x", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_collapseminussettings3(self): r = libsbml.parseL3Formula("x---4.4") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseCollapseMinus(True) - self.assert_( settings.getParseCollapseMinus() == True ) + self.assertTrue( settings.getParseCollapseMinus() == True ) r = libsbml.parseL3FormulaWithSettings("x---4.4", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseCollapseMinus(False) - self.assert_( settings.getParseCollapseMinus() == False ) + self.assertTrue( settings.getParseCollapseMinus() == False ) r = libsbml.parseL3FormulaWithSettings("x---4.4", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_collapseminussettings4(self): r = libsbml.parseL3Formula("x---y") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "y" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "y" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseCollapseMinus(True) - self.assert_( settings.getParseCollapseMinus() == True ) + self.assertTrue( settings.getParseCollapseMinus() == True ) r = libsbml.parseL3FormulaWithSettings("x---y", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "y" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "y" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseCollapseMinus(False) - self.assert_( settings.getParseCollapseMinus() == False ) + self.assertTrue( settings.getParseCollapseMinus() == False ) r = libsbml.parseL3FormulaWithSettings("x---y", settings) - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_MINUS ) - self.assert_( c.getNumChildren() == 1 ) + self.assertTrue( c.getType() == libsbml.AST_MINUS ) + self.assertTrue( c.getNumChildren() == 1 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "y" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "y" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass @@ -607,221 +607,221 @@ def test_SBML_C_parseL3Formula_collapseminussettings4(self): def test_SBML_C_parseL3Formula_collapseminussettings5(self): settings = libsbml.getDefaultL3ParserSettings() settings.setParseCollapseMinus(True) - self.assert_( settings.getParseCollapseMinus() == True ) + self.assertTrue( settings.getParseCollapseMinus() == True ) r = libsbml.parseL3FormulaWithSettings("---4", settings) - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == -4 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == -4 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("---(3/8)", settings) - self.assert_( r.getType() == libsbml.AST_RATIONAL ) - self.assert_( r.getNumerator() == -3 ) - self.assert_( r.getDenominator() == 8 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( r.getNumerator() == -3 ) + self.assertTrue( r.getDenominator() == 8 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("---(-3/8)", settings) - self.assert_( r.getType() == libsbml.AST_RATIONAL ) - self.assert_( r.getNumerator() == 3 ) - self.assert_( r.getDenominator() == 8 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( r.getNumerator() == 3 ) + self.assertTrue( r.getDenominator() == 8 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("---4.4", settings) - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( r.getReal() == -4.4 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( r.getReal() == -4.4 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("---4e-3", settings) - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == -4 ) - self.assert_( r.getExponent() == -3 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == -4 ) + self.assertTrue( r.getExponent() == -3 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("---.4", settings) - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( r.getReal() == -.4 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( r.getReal() == -.4 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants1(self): r = libsbml.parseL3Formula("true") - self.assert_( r.getType() == libsbml.AST_CONSTANT_TRUE ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_CONSTANT_TRUE ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants10(self): r = libsbml.parseL3Formula("notanumber") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( isnan(r.getReal()) == 1 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( isnan(r.getReal()) == 1 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants11(self): r = libsbml.parseL3Formula("nan") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( isnan(r.getReal()) == 1 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( isnan(r.getReal()) == 1 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants12(self): r = libsbml.parseL3Formula("NaN") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( isnan(r.getReal()) == 1 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( isnan(r.getReal()) == 1 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants2(self): r = libsbml.parseL3Formula("false") - self.assert_( r.getType() == libsbml.AST_CONSTANT_FALSE ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_CONSTANT_FALSE ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants3(self): r = libsbml.parseL3Formula("pi") - self.assert_( r.getType() == libsbml.AST_CONSTANT_PI ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_CONSTANT_PI ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants4(self): r = libsbml.parseL3Formula("exponentiale") - self.assert_( r.getType() == libsbml.AST_CONSTANT_E ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_CONSTANT_E ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants5(self): r = libsbml.parseL3Formula("avogadro") - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants6(self): r = libsbml.parseL3Formula("time") - self.assert_( r.getType() == libsbml.AST_NAME_TIME ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_TIME ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants7(self): r = libsbml.parseL3Formula("inf") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( util_isInf(r.getReal()) == True ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( util_isInf(r.getReal()) == True ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants8(self): r = libsbml.parseL3Formula("infinity") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( util_isInf(r.getReal()) == True ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( util_isInf(r.getReal()) == True ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_constants9(self): r = libsbml.parseL3Formula("INF") - self.assert_( r.getType() == libsbml.AST_REAL ) - self.assert_( util_isInf(r.getReal()) == True ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL ) + self.assertTrue( util_isInf(r.getReal()) == True ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_e1(self): r = libsbml.parseL3Formula("2.001e+5") - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == 2.001 ) - self.assert_( r.getExponent() == 5 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == 2.001 ) + self.assertTrue( r.getExponent() == 5 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_e2(self): r = libsbml.parseL3Formula(".001e+5") - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == .001 ) - self.assert_( r.getExponent() == 5 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == .001 ) + self.assertTrue( r.getExponent() == 5 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_e3(self): r = libsbml.parseL3Formula(".001e-5") - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == .001 ) - self.assert_( r.getExponent() == -5 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == .001 ) + self.assertTrue( r.getExponent() == -5 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_e4(self): r = libsbml.parseL3Formula("2.e-005") - self.assert_( r.getType() == libsbml.AST_REAL_E ) - self.assert_( r.getMantissa() == 2 ) - self.assert_( r.getExponent() == -5 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_REAL_E ) + self.assertTrue( r.getMantissa() == 2 ) + self.assertTrue( r.getExponent() == -5 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_e5(self): r = libsbml.parseL3Formula(".e+5") - self.assert_( r == None ) - self.assert_(( "Error when parsing input '.e+5' at position 1: syntax error, unexpected $undefined" == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '.e+5' at position 1: syntax error, unexpected $undefined" == libsbml.getLastParseL3Error() )) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_logic1(self): r = libsbml.parseL3Formula("1 && 2 == 3") - self.assert_( r.getType() == libsbml.AST_LOGICAL_AND ) - self.assert_(( "and" == r.getName() )) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_LOGICAL_AND ) + self.assertTrue(( "and" == r.getName() )) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_RELATIONAL_EQ ) - self.assert_(( "eq" == c.getName() )) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_RELATIONAL_EQ ) + self.assertTrue(( "eq" == c.getName() )) + self.assertTrue( c.getNumChildren() == 2 ) c = c.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_logic2(self): r = libsbml.parseL3Formula("(1 && 2) == 3") - self.assert_( r.getType() == libsbml.AST_RELATIONAL_EQ ) - self.assert_(( "eq" == r.getName() )) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_RELATIONAL_EQ ) + self.assertTrue(( "eq" == r.getName() )) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_LOGICAL_AND ) - self.assert_(( "and" == c.getName() )) - self.assert_( c.getNumChildren() == 2 ) + self.assertTrue( c.getType() == libsbml.AST_LOGICAL_AND ) + self.assertTrue(( "and" == c.getName() )) + self.assertTrue( c.getNumChildren() == 2 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getLeftChild().getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -830,9 +830,9 @@ def test_SBML_C_parseL3Formula_modelPresent1(self): p = model.createParameter() p.setId( "infinity") r = libsbml.parseL3FormulaWithModel("infinity", model) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "infinity" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "infinity" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -841,9 +841,9 @@ def test_SBML_C_parseL3Formula_modelPresent2(self): p = model.createSpecies() p.setId( "true") r = libsbml.parseL3FormulaWithModel("true", model) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "true" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "true" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -852,9 +852,9 @@ def test_SBML_C_parseL3Formula_modelPresent3(self): p = model.createCompartment() p.setId( "NaN") r = libsbml.parseL3FormulaWithModel("NaN", model) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "NaN" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "NaN" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -863,9 +863,9 @@ def test_SBML_C_parseL3Formula_modelPresent4(self): p = model.createReaction() p.setId( "pi") r = libsbml.parseL3FormulaWithModel("pi", model) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "pi" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "pi" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -875,9 +875,9 @@ def test_SBML_C_parseL3Formula_modelPresent5(self): sr = p.createProduct() sr.setId( "avogadro") r = libsbml.parseL3FormulaWithModel("avogadro", model) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "avogadro" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "avogadro" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -887,9 +887,9 @@ def test_SBML_C_parseL3Formula_modelPresent6(self): sr = p.createProduct() sr.setId( "AVOGADRO") r = libsbml.parseL3FormulaWithModel("avogadro", model) - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_(( "avogadro" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue(( "avogadro" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass @@ -898,370 +898,370 @@ def test_SBML_C_parseL3Formula_modelPresent7(self): p = model.createFunctionDefinition() p.setId( "sin") r = libsbml.parseL3FormulaWithModel("sin(x, y)", model) - self.assert_( r.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "sin" == r.getName() )) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "sin" == r.getName() )) + self.assertTrue( r.getNumChildren() == 2 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_modulo(self): r = libsbml.parseL3Formula("x % y") - self.assert_(( "piecewise(x - y * ceil(x / y), xor(lt(x, 0), lt(y, 0)), x - y * floor(x / y))" == libsbml.formulaToString(r) )) + self.assertTrue(( "piecewise(x - y * ceil(x / y), xor(lt(x, 0), lt(y, 0)), x - y * floor(x / y))" == libsbml.formulaToString(r) )) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_negInf(self): r = libsbml.parseL3Formula("-inf") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getCharacter() == '-' ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getCharacter() == '-' ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( util_isInf(c.getReal()) == True ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( util_isInf(c.getReal()) == True ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_negZero(self): r = libsbml.parseL3Formula("-0.0") - self.assert_( r.getType() == libsbml.AST_MINUS ) - self.assert_( r.getCharacter() == '-' ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_MINUS ) + self.assertTrue( r.getCharacter() == '-' ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 0 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 0 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_oddMathML1(self): r = libsbml.parseL3Formula("sqrt(3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_ROOT ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_ROOT ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_oddMathML2(self): r = libsbml.parseL3Formula("sqr(3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_POWER ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_POWER ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 2 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 2 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_oddMathML3(self): r = libsbml.parseL3Formula("log10(3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 10 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 10 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_oddMathML4(self): r = libsbml.parseL3Formula("log(4.4, 3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_oddMathML5(self): r = libsbml.parseL3Formula("root(1.1, 3)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_ROOT ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_ROOT ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 1.1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 1.1 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_parselogsettings(self): r = libsbml.parseL3Formula("log(4.4)") - self.assert_( r.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 10 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 10 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.L3ParserSettings() settings.setParseLog(libsbml.L3P_PARSE_LOG_AS_LN) - self.assert_( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_LN ) + self.assertTrue( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_LN ) r = libsbml.parseL3FormulaWithSettings("log(4.4)", settings) - self.assert_( r.getType() == libsbml.AST_FUNCTION_LN ) - self.assert_( r.getNumChildren() == 1 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_LN ) + self.assertTrue( r.getNumChildren() == 1 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseLog(libsbml.L3P_PARSE_LOG_AS_LOG10) - self.assert_( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_LOG10 ) + self.assertTrue( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_LOG10 ) r = libsbml.parseL3FormulaWithSettings("log(4.4)", settings) - self.assert_( r.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 10 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 10 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseLog(libsbml.L3P_PARSE_LOG_AS_ERROR) - self.assert_( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_ERROR ) + self.assertTrue( settings.getParseLog() == libsbml.L3P_PARSE_LOG_AS_ERROR ) r = libsbml.parseL3FormulaWithSettings("log(4.4)", settings) - self.assert_( r == None ) - self.assert_(( "Error when parsing input 'log(4.4)' at position 8: Writing a function as 'log(x)' was legal in the L1 parser, but translated as the natural log, not the base-10 log. This construct is disallowed entirely as being ambiguous, and you are encouraged instead to use 'ln(x)', 'log10(x)', or 'log(base, x)'." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input 'log(4.4)' at position 8: Writing a function as 'log(x)' was legal in the L1 parser, but translated as the natural log, not the base-10 log. This construct is disallowed entirely as being ambiguous, and you are encouraged instead to use 'ln(x)', 'log10(x)', or 'log(base, x)'." == libsbml.getLastParseL3Error() )) _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_precedence(self): root = libsbml.parseL3Formula("a && b == !(c - d * e^-f) ") - self.assert_( root.getType() == libsbml.AST_LOGICAL_AND ) - self.assert_(( "and" == root.getName() )) - self.assert_( root.getNumChildren() == 2 ) + self.assertTrue( root.getType() == libsbml.AST_LOGICAL_AND ) + self.assertTrue(( "and" == root.getName() )) + self.assertTrue( root.getNumChildren() == 2 ) left = root.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "a" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "a" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) right = root.getRightChild() - self.assert_( right.getType() == libsbml.AST_RELATIONAL_EQ ) - self.assert_(( "eq" == right.getName() )) - self.assert_( right.getNumChildren() == 2 ) + self.assertTrue( right.getType() == libsbml.AST_RELATIONAL_EQ ) + self.assertTrue(( "eq" == right.getName() )) + self.assertTrue( right.getNumChildren() == 2 ) left = right.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "b" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "b" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) right = right.getRightChild() - self.assert_( right.getType() == libsbml.AST_LOGICAL_NOT ) - self.assert_(( "not" == right.getName() )) - self.assert_( right.getNumChildren() == 1 ) + self.assertTrue( right.getType() == libsbml.AST_LOGICAL_NOT ) + self.assertTrue(( "not" == right.getName() )) + self.assertTrue( right.getNumChildren() == 1 ) right = right.getLeftChild() - self.assert_( right.getType() == libsbml.AST_MINUS ) - self.assert_( right.getCharacter() == '-' ) - self.assert_( right.getNumChildren() == 2 ) + self.assertTrue( right.getType() == libsbml.AST_MINUS ) + self.assertTrue( right.getCharacter() == '-' ) + self.assertTrue( right.getNumChildren() == 2 ) left = right.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "c" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "c" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) right = right.getRightChild() - self.assert_( right.getType() == libsbml.AST_TIMES ) - self.assert_( right.getCharacter() == '*' ) - self.assert_( right.getNumChildren() == 2 ) + self.assertTrue( right.getType() == libsbml.AST_TIMES ) + self.assertTrue( right.getCharacter() == '*' ) + self.assertTrue( right.getNumChildren() == 2 ) left = right.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "d" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "d" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) right = right.getRightChild() - self.assert_( right.getType() == libsbml.AST_POWER ) - self.assert_( right.getCharacter() == '^' ) - self.assert_( right.getNumChildren() == 2 ) + self.assertTrue( right.getType() == libsbml.AST_POWER ) + self.assertTrue( right.getCharacter() == '^' ) + self.assertTrue( right.getNumChildren() == 2 ) left = right.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "e" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "e" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) right = right.getRightChild() - self.assert_( right.getType() == libsbml.AST_MINUS ) - self.assert_( right.getCharacter() == '-' ) - self.assert_( right.getNumChildren() == 1 ) + self.assertTrue( right.getType() == libsbml.AST_MINUS ) + self.assertTrue( right.getCharacter() == '-' ) + self.assertTrue( right.getNumChildren() == 1 ) left = right.getLeftChild() - self.assert_( left.getType() == libsbml.AST_NAME ) - self.assert_(( "f" == left.getName() )) - self.assert_( left.getNumChildren() == 0 ) + self.assertTrue( left.getType() == libsbml.AST_NAME ) + self.assertTrue(( "f" == left.getName() )) + self.assertTrue( left.getNumChildren() == 0 ) _dummyList = [ root ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational1(self): r = libsbml.parseL3Formula("(3/4)") - self.assert_( r.getType() == libsbml.AST_RATIONAL ) - self.assert_( r.getNumerator() == 3 ) - self.assert_( r.getDenominator() == 4 ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( r.getNumerator() == 3 ) + self.assertTrue( r.getDenominator() == 4 ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational2(self): r = libsbml.parseL3Formula("(3/4) mL") - self.assert_( r.getType() == libsbml.AST_RATIONAL ) - self.assert_( r.getNumerator() == 3 ) - self.assert_( r.getDenominator() == 4 ) - self.assert_(( "mL" == r.getUnits() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( r.getNumerator() == 3 ) + self.assertTrue( r.getDenominator() == 4 ) + self.assertTrue(( "mL" == r.getUnits() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational3(self): r = libsbml.parseL3Formula("3/4") - self.assert_( r.getType() == libsbml.AST_DIVIDE ) - self.assert_( r.getCharacter() == '/' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( r.getCharacter() == '/' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational4(self): r = libsbml.parseL3Formula("(3/x)") - self.assert_( r.getType() == libsbml.AST_DIVIDE ) - self.assert_( r.getCharacter() == '/' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( r.getCharacter() == '/' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational5(self): r = libsbml.parseL3Formula("(3/4.4)") - self.assert_( r.getType() == libsbml.AST_DIVIDE ) - self.assert_( r.getCharacter() == '/' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( r.getCharacter() == '/' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 4.4 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 4.4 ) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational6(self): r = libsbml.parseL3Formula("3/4 ml") - self.assert_( r.getType() == libsbml.AST_DIVIDE ) - self.assert_( r.getCharacter() == '/' ) - self.assert_( r.getNumChildren() == 2 ) + self.assertTrue( r.getType() == libsbml.AST_DIVIDE ) + self.assertTrue( r.getCharacter() == '/' ) + self.assertTrue( r.getNumChildren() == 2 ) c = r.getLeftChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 3 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 3 ) + self.assertTrue( c.getNumChildren() == 0 ) c = r.getRightChild() - self.assert_( c.getType() == libsbml.AST_INTEGER ) - self.assert_( c.getInteger() == 4 ) - self.assert_(( "ml" == c.getUnits() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c.getType() == libsbml.AST_INTEGER ) + self.assertTrue( c.getInteger() == 4 ) + self.assertTrue(( "ml" == c.getUnits() )) + self.assertTrue( c.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_rational7(self): r = libsbml.parseL3Formula("(3/4.4) ml") - self.assert_( r == None ) - self.assert_(( "Error when parsing input '(3/4.4) ml' at position 10: syntax error, unexpected element name" == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '(3/4.4) ml' at position 10: syntax error, unexpected element name" == libsbml.getLastParseL3Error() )) pass def test_SBML_C_parseL3Formula_targetl2settings(self): r = libsbml.parseL3Formula("4 mL") - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == 4 ) - self.assert_(( "mL" == r.getUnits() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == 4 ) + self.assertTrue(( "mL" == r.getUnits() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3Formula("avogadro") - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseUnits(False) settings.setParseAvogadroCsymbol(False) - self.assert_( settings.getParseUnits() == False ) - self.assert_( settings.getParseAvogadroCsymbol() == False ) + self.assertTrue( settings.getParseUnits() == False ) + self.assertTrue( settings.getParseAvogadroCsymbol() == False ) r = libsbml.parseL3FormulaWithSettings("4 mL", settings) - self.assert_( r == None ) - self.assert_(( "Error when parsing input '4 mL' at position 4: The ability to associate units with numbers has been disabled." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '4 mL' at position 4: The ability to associate units with numbers has been disabled." == libsbml.getLastParseL3Error() )) r = libsbml.parseL3FormulaWithSettings("avogadro", settings) - self.assert_( r.getType() == libsbml.AST_NAME ) - self.assert_(( "avogadro" == r.getName() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME ) + self.assertTrue(( "avogadro" == r.getName() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings.setParseUnits(True) settings.setParseAvogadroCsymbol(True) - self.assert_( settings.getParseUnits() == True ) - self.assert_( settings.getParseAvogadroCsymbol() == True ) + self.assertTrue( settings.getParseUnits() == True ) + self.assertTrue( settings.getParseAvogadroCsymbol() == True ) r = libsbml.parseL3FormulaWithSettings("4 mL", settings) - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == 4 ) - self.assert_(( "mL" == r.getUnits() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == 4 ) + self.assertTrue(( "mL" == r.getUnits() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = libsbml.parseL3FormulaWithSettings("avogadro", settings) - self.assert_( r.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass def test_SBML_C_parseL3Formula_unitssettings(self): r = libsbml.parseL3Formula("4 mL") - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == 4 ) - self.assert_(( "mL" == r.getUnits() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == 4 ) + self.assertTrue(( "mL" == r.getUnits() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList settings = libsbml.getDefaultL3ParserSettings() settings.setParseUnits(False) - self.assert_( settings.getParseUnits() == False ) + self.assertTrue( settings.getParseUnits() == False ) r = libsbml.parseL3FormulaWithSettings("4 mL", settings) - self.assert_( r == None ) - self.assert_(( "Error when parsing input '4 mL' at position 4: The ability to associate units with numbers has been disabled." == libsbml.getLastParseL3Error() )) + self.assertTrue( r == None ) + self.assertTrue(( "Error when parsing input '4 mL' at position 4: The ability to associate units with numbers has been disabled." == libsbml.getLastParseL3Error() )) settings.setParseUnits(True) - self.assert_( settings.getParseUnits() == True ) + self.assertTrue( settings.getParseUnits() == True ) r = libsbml.parseL3FormulaWithSettings("4 mL", settings) - self.assert_( r.getType() == libsbml.AST_INTEGER ) - self.assert_( r.getInteger() == 4 ) - self.assert_(( "mL" == r.getUnits() )) - self.assert_( r.getNumChildren() == 0 ) + self.assertTrue( r.getType() == libsbml.AST_INTEGER ) + self.assertTrue( r.getInteger() == 4 ) + self.assertTrue(( "mL" == r.getUnits() )) + self.assertTrue( r.getNumChildren() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ settings ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/math/TestMathReadFromFile1.py b/src/bindings/python/test/math/TestMathReadFromFile1.py index 2ff1134621..df8619eba2 100644 --- a/src/bindings/python/test/math/TestMathReadFromFile1.py +++ b/src/bindings/python/test/math/TestMathReadFromFile1.py @@ -45,52 +45,52 @@ def test_read_MathML_1(self): if (d == None): pass m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getNumFunctionDefinitions() == 2 ) - self.assert_( m.getNumInitialAssignments() == 1 ) - self.assert_( m.getNumRules() == 2 ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( m != None ) + self.assertTrue( m.getNumFunctionDefinitions() == 2 ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) + self.assertTrue( m.getNumRules() == 2 ) + self.assertTrue( m.getNumReactions() == 1 ) fd = m.getFunctionDefinition(0) fd_math = fd.getMath() - self.assert_( fd_math.getType() == libsbml.AST_LAMBDA ) - self.assert_( fd_math.getNumChildren() == 2 ) - self.assert_(( "lambda(x, )" == libsbml.formulaToString(fd_math) )) - self.assert_( fd_math.getParentSBMLObject() == fd ) + self.assertTrue( fd_math.getType() == libsbml.AST_LAMBDA ) + self.assertTrue( fd_math.getNumChildren() == 2 ) + self.assertTrue(( "lambda(x, )" == libsbml.formulaToString(fd_math) )) + self.assertTrue( fd_math.getParentSBMLObject() == fd ) child = fd_math.getRightChild() - self.assert_( child.getType() == libsbml.AST_UNKNOWN ) - self.assert_( child.getNumChildren() == 0 ) - self.assert_(( "" == libsbml.formulaToString(child) )) + self.assertTrue( child.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( child.getNumChildren() == 0 ) + self.assertTrue(( "" == libsbml.formulaToString(child) )) fd = m.getFunctionDefinition(1) fd1_math = fd.getMath() - self.assert_( fd1_math.getType() == libsbml.AST_LAMBDA ) - self.assert_( fd1_math.getNumChildren() == 2 ) - self.assert_(( "lambda(x, true)" == libsbml.formulaToString(fd1_math) )) - self.assert_( fd1_math.getParentSBMLObject() == fd ) + self.assertTrue( fd1_math.getType() == libsbml.AST_LAMBDA ) + self.assertTrue( fd1_math.getNumChildren() == 2 ) + self.assertTrue(( "lambda(x, true)" == libsbml.formulaToString(fd1_math) )) + self.assertTrue( fd1_math.getParentSBMLObject() == fd ) child1 = fd1_math.getRightChild() - self.assert_( child1.getType() == libsbml.AST_CONSTANT_TRUE ) - self.assert_( child1.getNumChildren() == 0 ) - self.assert_(( "true" == libsbml.formulaToString(child1) )) + self.assertTrue( child1.getType() == libsbml.AST_CONSTANT_TRUE ) + self.assertTrue( child1.getNumChildren() == 0 ) + self.assertTrue(( "true" == libsbml.formulaToString(child1) )) ia = m.getInitialAssignment(0) ia_math = ia.getMath() - self.assert_( ia_math.getType() == libsbml.AST_UNKNOWN ) - self.assert_( ia_math.getNumChildren() == 0 ) - self.assert_(( "" == libsbml.formulaToString(ia_math) )) - self.assert_( ia_math.getParentSBMLObject() == ia ) + self.assertTrue( ia_math.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( ia_math.getNumChildren() == 0 ) + self.assertTrue(( "" == libsbml.formulaToString(ia_math) )) + self.assertTrue( ia_math.getParentSBMLObject() == ia ) r = m.getRule(0) r_math = r.getMath() - self.assert_( r_math.getType() == libsbml.AST_CONSTANT_TRUE ) - self.assert_( r_math.getNumChildren() == 0 ) - self.assert_(( "true" == libsbml.formulaToString(r_math) )) - self.assert_( r_math.getParentSBMLObject() == r ) + self.assertTrue( r_math.getType() == libsbml.AST_CONSTANT_TRUE ) + self.assertTrue( r_math.getNumChildren() == 0 ) + self.assertTrue(( "true" == libsbml.formulaToString(r_math) )) + self.assertTrue( r_math.getParentSBMLObject() == r ) r = m.getRule(1) r1_math = r.getMath() - self.assert_( r1_math.getType() == libsbml.AST_REAL ) - self.assert_( r1_math.getNumChildren() == 0 ) - self.assert_(( "INF" == libsbml.formulaToString(r1_math) )) - self.assert_( r1_math.getParentSBMLObject() == r ) + self.assertTrue( r1_math.getType() == libsbml.AST_REAL ) + self.assertTrue( r1_math.getNumChildren() == 0 ) + self.assertTrue(( "INF" == libsbml.formulaToString(r1_math) )) + self.assertTrue( r1_math.getParentSBMLObject() == r ) # kl = m.getReaction(0).getKineticLaw() # kl_math = kl.getMath() - # self.assert_( kl_math == None ) + # self.assertTrue( kl_math == None ) d = None pass diff --git a/src/bindings/python/test/math/TestMathReadFromFile2.py b/src/bindings/python/test/math/TestMathReadFromFile2.py index 386e4bb8d9..51f17a85bf 100644 --- a/src/bindings/python/test/math/TestMathReadFromFile2.py +++ b/src/bindings/python/test/math/TestMathReadFromFile2.py @@ -45,76 +45,76 @@ def test_read_MathML_2(self): if (d == None): pass m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getNumFunctionDefinitions() == 2 ) - self.assert_( m.getNumInitialAssignments() == 1 ) - self.assert_( m.getNumRules() == 2 ) + self.assertTrue( m != None ) + self.assertTrue( m.getNumFunctionDefinitions() == 2 ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) + self.assertTrue( m.getNumRules() == 2 ) fd = m.getFunctionDefinition(0) fd_math = fd.getMath() - self.assert_( fd_math.getType() == libsbml.AST_LAMBDA ) - self.assert_( fd_math.getNumChildren() == 1 ) - self.assert_(( "lambda()" == libsbml.formulaToString(fd_math) )) + self.assertTrue( fd_math.getType() == libsbml.AST_LAMBDA ) + self.assertTrue( fd_math.getNumChildren() == 1 ) + self.assertTrue(( "lambda()" == libsbml.formulaToString(fd_math) )) child = fd_math.getChild(0) - self.assert_( child.getType() == libsbml.AST_UNKNOWN ) - self.assert_( child.getNumChildren() == 0 ) - self.assert_(( "" == libsbml.formulaToString(child) )) + self.assertTrue( child.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( child.getNumChildren() == 0 ) + self.assertTrue(( "" == libsbml.formulaToString(child) )) fd = m.getFunctionDefinition(1) fd1_math = fd.getMath() - self.assert_( fd1_math.getType() == libsbml.AST_LAMBDA ) - self.assert_( fd1_math.getNumChildren() == 2 ) - self.assert_(( "lambda(x, piecewise(p, leq(x, 4)))" == libsbml.formulaToString(fd1_math) )) + self.assertTrue( fd1_math.getType() == libsbml.AST_LAMBDA ) + self.assertTrue( fd1_math.getNumChildren() == 2 ) + self.assertTrue(( "lambda(x, piecewise(p, leq(x, 4)))" == libsbml.formulaToString(fd1_math) )) child1 = fd1_math.getRightChild() - self.assert_( child1.getType() == libsbml.AST_FUNCTION_PIECEWISE ) - self.assert_( child1.getNumChildren() == 2 ) - self.assert_(( "piecewise(p, leq(x, 4))" == libsbml.formulaToString(child1) )) + self.assertTrue( child1.getType() == libsbml.AST_FUNCTION_PIECEWISE ) + self.assertTrue( child1.getNumChildren() == 2 ) + self.assertTrue(( "piecewise(p, leq(x, 4))" == libsbml.formulaToString(child1) )) c1 = child1.getChild(0) - self.assert_( c1.getType() == libsbml.AST_NAME ) - self.assert_( c1.getNumChildren() == 0 ) - self.assert_(( "p" == libsbml.formulaToString(c1) )) + self.assertTrue( c1.getType() == libsbml.AST_NAME ) + self.assertTrue( c1.getNumChildren() == 0 ) + self.assertTrue(( "p" == libsbml.formulaToString(c1) )) c2 = child1.getChild(1) - self.assert_( c2.getType() == libsbml.AST_RELATIONAL_LEQ ) - self.assert_( c2.getNumChildren() == 2 ) - self.assert_(( "leq(x, 4)" == libsbml.formulaToString(c2) )) + self.assertTrue( c2.getType() == libsbml.AST_RELATIONAL_LEQ ) + self.assertTrue( c2.getNumChildren() == 2 ) + self.assertTrue(( "leq(x, 4)" == libsbml.formulaToString(c2) )) ia = m.getInitialAssignment(0) ia_math = ia.getMath() - self.assert_( ia_math.getType() == libsbml.AST_FUNCTION_PIECEWISE ) - self.assert_( ia_math.getNumChildren() == 4 ) - self.assert_(( "piecewise(-x, lt(x, 0), 0, eq(x, 0))" == libsbml.formulaToString(ia_math) )) + self.assertTrue( ia_math.getType() == libsbml.AST_FUNCTION_PIECEWISE ) + self.assertTrue( ia_math.getNumChildren() == 4 ) + self.assertTrue(( "piecewise(-x, lt(x, 0), 0, eq(x, 0))" == libsbml.formulaToString(ia_math) )) child1 = ia_math.getChild(0) child2 = ia_math.getChild(1) child3 = ia_math.getChild(2) child4 = ia_math.getChild(3) - self.assert_( child1.getType() == libsbml.AST_MINUS ) - self.assert_( child1.getNumChildren() == 1 ) - self.assert_(( "-x" == libsbml.formulaToString(child1) )) - self.assert_( child2.getType() == libsbml.AST_RELATIONAL_LT ) - self.assert_( child2.getNumChildren() == 2 ) - self.assert_(( "lt(x, 0)" == libsbml.formulaToString(child2) )) - self.assert_( child3.getType() == libsbml.AST_REAL ) - self.assert_( child3.getNumChildren() == 0 ) - self.assert_(( "0" == libsbml.formulaToString(child3) )) - self.assert_( child4.getType() == libsbml.AST_RELATIONAL_EQ ) - self.assert_( child4.getNumChildren() == 2 ) - self.assert_(( "eq(x, 0)" == libsbml.formulaToString(child4) )) + self.assertTrue( child1.getType() == libsbml.AST_MINUS ) + self.assertTrue( child1.getNumChildren() == 1 ) + self.assertTrue(( "-x" == libsbml.formulaToString(child1) )) + self.assertTrue( child2.getType() == libsbml.AST_RELATIONAL_LT ) + self.assertTrue( child2.getNumChildren() == 2 ) + self.assertTrue(( "lt(x, 0)" == libsbml.formulaToString(child2) )) + self.assertTrue( child3.getType() == libsbml.AST_REAL ) + self.assertTrue( child3.getNumChildren() == 0 ) + self.assertTrue(( "0" == libsbml.formulaToString(child3) )) + self.assertTrue( child4.getType() == libsbml.AST_RELATIONAL_EQ ) + self.assertTrue( child4.getNumChildren() == 2 ) + self.assertTrue(( "eq(x, 0)" == libsbml.formulaToString(child4) )) r = m.getRule(0) #r_math = r.getMath() - #self.assert_( r_math == None ) + #self.assertTrue( r_math == None ) r = m.getRule(1) r1_math = r.getMath() - self.assert_( r1_math.getType() == libsbml.AST_FUNCTION_LOG ) - self.assert_( r1_math.getNumChildren() == 2 ) - self.assert_(( "log(3, x)" == libsbml.formulaToString(r1_math) )) + self.assertTrue( r1_math.getType() == libsbml.AST_FUNCTION_LOG ) + self.assertTrue( r1_math.getNumChildren() == 2 ) + self.assertTrue(( "log(3, x)" == libsbml.formulaToString(r1_math) )) child1 = r1_math.getChild(0) child2 = r1_math.getChild(1) - #self.assert_( child1.getType() == libsbml.AST_QUALIFIER_LOGBASE ) - #self.assert_( child1.getNumChildren() == 1 ) - #self.assert_( child2.getType() == libsbml.AST_NAME ) - #self.assert_( child2.getNumChildren() == 0 ) - #self.assert_(( "x" == libsbml.formulaToString(child2) )) + #self.assertTrue( child1.getType() == libsbml.AST_QUALIFIER_LOGBASE ) + #self.assertTrue( child1.getNumChildren() == 1 ) + #self.assertTrue( child2.getType() == libsbml.AST_NAME ) + #self.assertTrue( child2.getNumChildren() == 0 ) + #self.assertTrue(( "x" == libsbml.formulaToString(child2) )) #child2 = child1.getChild(0) - #self.assert_( child2.getType() == libsbml.AST_REAL ) - #self.assert_( child2.getNumChildren() == 0 ) - #self.assert_(( "3" == libsbml.formulaToString(child2) )) + #self.assertTrue( child2.getType() == libsbml.AST_REAL ) + #self.assertTrue( child2.getNumChildren() == 0 ) + #self.assertTrue(( "3" == libsbml.formulaToString(child2) )) d = None pass diff --git a/src/bindings/python/test/math/TestReadMathML.py b/src/bindings/python/test/math/TestReadMathML.py index c1243bebdf..c2a2763886 100644 --- a/src/bindings/python/test/math/TestReadMathML.py +++ b/src/bindings/python/test/math/TestReadMathML.py @@ -126,114 +126,114 @@ def tearDown(self): def test_element_abs(self): s = wrapMathML("<apply><abs/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "abs(x)" == self.F )) + self.assertTrue(( "abs(x)" == self.F )) pass def test_element_and(self): s = wrapMathML("<apply> <and/> <ci>a</ci> <ci>b</ci> <ci>c</ci> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "and(a, b, c)" == self.F )) + self.assertTrue(( "and(a, b, c)" == self.F )) pass def test_element_arccos(self): s = wrapMathML("<apply><arccos/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "acos(x)" == self.F )) + self.assertTrue(( "acos(x)" == self.F )) pass def test_element_arccosh(self): s = wrapMathML("<apply><arccosh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arccosh(x)" == self.F )) + self.assertTrue(( "arccosh(x)" == self.F )) pass def test_element_arccot(self): s = wrapMathML("<apply><arccot/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arccot(x)" == self.F )) + self.assertTrue(( "arccot(x)" == self.F )) pass def test_element_arccoth(self): s = wrapMathML("<apply><arccoth/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arccoth(x)" == self.F )) + self.assertTrue(( "arccoth(x)" == self.F )) pass def test_element_arccsc(self): s = wrapMathML("<apply><arccsc/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arccsc(x)" == self.F )) + self.assertTrue(( "arccsc(x)" == self.F )) pass def test_element_arccsch(self): s = wrapMathML("<apply><arccsch/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arccsch(x)" == self.F )) + self.assertTrue(( "arccsch(x)" == self.F )) pass def test_element_arcsec(self): s = wrapMathML("<apply><arcsec/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arcsec(x)" == self.F )) + self.assertTrue(( "arcsec(x)" == self.F )) pass def test_element_arcsech(self): s = wrapMathML("<apply><arcsech/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arcsech(x)" == self.F )) + self.assertTrue(( "arcsech(x)" == self.F )) pass def test_element_arcsin(self): s = wrapMathML("<apply><arcsin/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "asin(x)" == self.F )) + self.assertTrue(( "asin(x)" == self.F )) pass def test_element_arcsinh(self): s = wrapMathML("<apply><arcsinh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arcsinh(x)" == self.F )) + self.assertTrue(( "arcsinh(x)" == self.F )) pass def test_element_arctan(self): s = wrapMathML("<apply><arctan/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "atan(x)" == self.F )) + self.assertTrue(( "atan(x)" == self.F )) pass def test_element_arctanh(self): s = wrapMathML("<apply><arctanh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "arctanh(x)" == self.F )) + self.assertTrue(( "arctanh(x)" == self.F )) pass def test_element_bug_apply_ci_1(self): @@ -242,15 +242,15 @@ def test_element_bug_apply_ci_1(self): " <cn> 1 </cn>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "Y" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 1 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "Y" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 1 ) c = self.N.getLeftChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 1 ) + self.assertTrue( c.getNumChildren() == 0 ) pass def test_element_bug_apply_ci_2(self): @@ -260,54 +260,54 @@ def test_element_bug_apply_ci_2(self): " definitionURL='http://www.sbml.org/sbml/symbols/time'> t </csymbol>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_FUNCTION ) - self.assert_(( "Y" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 1 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_FUNCTION ) + self.assertTrue(( "Y" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 1 ) c = self.N.getLeftChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_NAME_TIME ) - self.assert_(( "t" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_NAME_TIME ) + self.assertTrue(( "t" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) pass def test_element_bug_cn_e_notation_1(self): s = wrapMathML("<cn type='e-notation'> 2 <sep/> -8 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL_E ) - self.assert_( self.N.getMantissa() == 2.0 ) - self.assert_( self.N.getExponent() == -8.0 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL_E ) + self.assertTrue( self.N.getMantissa() == 2.0 ) + self.assertTrue( self.N.getExponent() == -8.0 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_bug_cn_e_notation_2(self): s = wrapMathML("<cn type='e-notation'> -3 <sep/> 4 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL_E ) - self.assert_( self.N.getMantissa() == -3.0 ) - self.assert_( self.N.getExponent() == 4.0 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL_E ) + self.assertTrue( self.N.getMantissa() == -3.0 ) + self.assertTrue( self.N.getExponent() == 4.0 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_bug_cn_e_notation_3(self): s = wrapMathML("<cn type='e-notation'> -6 <sep/> -1 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL_E ) - self.assert_( self.N.getMantissa() == -6.0 ) - self.assert_( self.N.getExponent() == -1.0 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL_E ) + self.assertTrue( self.N.getMantissa() == -6.0 ) + self.assertTrue( self.N.getExponent() == -1.0 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_bug_cn_integer_negative(self): s = wrapMathML("<cn type='integer'> -7 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_INTEGER ) - self.assert_( self.N.getInteger() == -7 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_INTEGER ) + self.assertTrue( self.N.getInteger() == -7 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_bug_csymbol_1(self): @@ -318,19 +318,19 @@ def test_element_bug_csymbol_1(self): " <cn>5000</cn>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_RELATIONAL_GT ) - self.assert_( self.N.getNumChildren() == 2 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_RELATIONAL_GT ) + self.assertTrue( self.N.getNumChildren() == 2 ) c = self.N.getLeftChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_NAME_TIME ) - self.assert_(( "time" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_NAME_TIME ) + self.assertTrue(( "time" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = self.N.getRightChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 5000 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 5000 ) + self.assertTrue( c.getNumChildren() == 0 ) pass def test_element_bug_csymbol_delay_1(self): @@ -341,20 +341,20 @@ def test_element_bug_csymbol_delay_1(self): " <cn> 0.1 </cn>" + "</apply>\n") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_FUNCTION_DELAY ) - self.assert_(( "my_delay" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 2 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_FUNCTION_DELAY ) + self.assertTrue(( "my_delay" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 2 ) c = self.N.getLeftChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == c.getName() )) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( c.getNumChildren() == 0 ) c = self.N.getRightChild() - self.assert_( c != None ) - self.assert_( c.getType() == libsbml.AST_REAL ) - self.assert_( c.getReal() == 0.1 ) - self.assert_( c.getNumChildren() == 0 ) + self.assertTrue( c != None ) + self.assertTrue( c.getType() == libsbml.AST_REAL ) + self.assertTrue( c.getReal() == 0.1 ) + self.assertTrue( c.getNumChildren() == 0 ) pass def test_element_bug_math_xmlns(self): @@ -364,219 +364,219 @@ def test_element_bug_math_xmlns(self): " </foo:apply>" + "</foo:math>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "1 + 2" == self.F )) + self.assertTrue(( "1 + 2" == self.F )) pass def test_element_ceiling(self): s = wrapMathML("<apply><ceiling/><cn> 1.6 </cn></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "ceil(1.6)" == self.F )) + self.assertTrue(( "ceil(1.6)" == self.F )) pass def test_element_ci(self): s = wrapMathML("<ci> x </ci>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_ci_definitionURL(self): s = wrapMathML("<ci definitionURL=\"foobar\"> x </ci>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_NAME ) - self.assert_(( "x" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) - self.assert_( self.N.getDefinitionURL().getValue(0) == "foobar" ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_NAME ) + self.assertTrue(( "x" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N.getDefinitionURL().getValue(0) == "foobar" ) pass def test_element_ci_surrounding_spaces_bug(self): s = wrapMathML(" <ci> s </ci> ") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_NAME ) - self.assert_(( "s" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_NAME ) + self.assertTrue(( "s" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_default(self): s = wrapMathML("<cn> 12345.7 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL ) - self.assert_( self.N.getReal() == 12345.7 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL ) + self.assertTrue( self.N.getReal() == 12345.7 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_e_notation(self): s = wrapMathML("<cn type='e-notation'> 12.3 <sep/> 5 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL_E ) - self.assert_( self.N.getMantissa() == 12.3 ) - self.assert_( self.N.getExponent() == 5 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL_E ) + self.assertTrue( self.N.getMantissa() == 12.3 ) + self.assertTrue( self.N.getExponent() == 5 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_integer(self): s = wrapMathML("<cn type='integer'> 12345 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_INTEGER ) - self.assert_( self.N.getInteger() == 12345 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_INTEGER ) + self.assertTrue( self.N.getInteger() == 12345 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_rational(self): s = wrapMathML("<cn type='rational'> 12342 <sep/> 2342342 </cn>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_RATIONAL ) - self.assert_( self.N.getNumerator() == 12342 ) - self.assert_( self.N.getDenominator() == 2342342 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_RATIONAL ) + self.assertTrue( self.N.getNumerator() == 12342 ) + self.assertTrue( self.N.getDenominator() == 2342342 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_real(self): s = wrapMathML("<cn type='real'> 12345.7 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL ) - self.assert_( self.N.getReal() == 12345.7 ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL ) + self.assertTrue( self.N.getReal() == 12345.7 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cn_units(self): s = wrapMathMLUnits("<cn sbml:units=\"mole\"> 12345.7 </cn>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL ) - self.assert_( self.N.getReal() == 12345.7 ) - self.assert_( self.N.getUnits() == "mole" ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL ) + self.assertTrue( self.N.getReal() == 12345.7 ) + self.assertTrue( self.N.getUnits() == "mole" ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_exponentiale(self): s = wrapMathML("<exponentiale/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_CONSTANT_E ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_CONSTANT_E ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_false(self): s = wrapMathML("<false/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_CONSTANT_FALSE ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_CONSTANT_FALSE ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_infinity(self): s = wrapMathML("<infinity/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL ) - self.assert_( util_isInf(self.N.getReal()) == True ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL ) + self.assertTrue( util_isInf(self.N.getReal()) == True ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_notanumber(self): s = wrapMathML("<notanumber/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_REAL ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_REAL ) self.assertEqual( True, isnan(self.N.getReal()) ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_pi(self): s = wrapMathML("<pi/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_CONSTANT_PI ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_CONSTANT_PI ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_constants_true(self): s = wrapMathML("<true/>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_CONSTANT_TRUE ) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_CONSTANT_TRUE ) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_cos(self): s = wrapMathML("<apply><cos/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "cos(x)" == self.F )) + self.assertTrue(( "cos(x)" == self.F )) pass def test_element_cosh(self): s = wrapMathML("<apply><cosh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "cosh(x)" == self.F )) + self.assertTrue(( "cosh(x)" == self.F )) pass def test_element_cot(self): s = wrapMathML("<apply><cot/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "cot(x)" == self.F )) + self.assertTrue(( "cot(x)" == self.F )) pass def test_element_coth(self): s = wrapMathML("<apply><coth/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "coth(x)" == self.F )) + self.assertTrue(( "coth(x)" == self.F )) pass def test_element_csc(self): s = wrapMathML("<apply><csc/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "csc(x)" == self.F )) + self.assertTrue(( "csc(x)" == self.F )) pass def test_element_csch(self): s = wrapMathML("<apply><csch/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "csch(x)" == self.F )) + self.assertTrue(( "csch(x)" == self.F )) pass def test_element_csymbol_avogadro(self): s = wrapMathML("<csymbol encoding='text' " + "definitionURL='http://www.sbml.org/sbml/symbols/avogadro'> NA </csymbol>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_NAME_AVOGADRO ) - self.assert_(( "NA" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_NAME_AVOGADRO ) + self.assertTrue(( "NA" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_csymbol_delay_1(self): s = wrapMathML("<csymbol encoding='text' " + "definitionURL='http://www.sbml.org/sbml/symbols/delay'> delay </csymbol>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_FUNCTION_DELAY ) - self.assert_(( "delay" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_FUNCTION_DELAY ) + self.assertTrue(( "delay" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_csymbol_delay_2(self): @@ -587,9 +587,9 @@ def test_element_csymbol_delay_2(self): " <cn> 0.1 </cn>" + "</apply>\n") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "my_delay(x, 0.1)" == self.F )) + self.assertTrue(( "my_delay(x, 0.1)" == self.F )) pass def test_element_csymbol_delay_3(self): @@ -604,59 +604,59 @@ def test_element_csymbol_delay_3(self): " <ci> q </ci>" + "</apply>\n") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "pow(delay(P, delta_t), q)" == self.F )) + self.assertTrue(( "pow(delay(P, delta_t), q)" == self.F )) pass def test_element_csymbol_time(self): s = wrapMathML("<csymbol encoding='text' " + "definitionURL='http://www.sbml.org/sbml/symbols/time'> t </csymbol>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_NAME_TIME ) - self.assert_(( "t" == self.N.getName() )) - self.assert_( self.N.getNumChildren() == 0 ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_NAME_TIME ) + self.assertTrue(( "t" == self.N.getName() )) + self.assertTrue( self.N.getNumChildren() == 0 ) pass def test_element_eq(self): s = wrapMathML("<apply> <eq/> <ci>a</ci> <ci>b</ci> <ci>c</ci> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "eq(a, b, c)" == self.F )) + self.assertTrue(( "eq(a, b, c)" == self.F )) pass def test_element_exp(self): s = wrapMathML("<apply><exp/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "exp(x)" == self.F )) + self.assertTrue(( "exp(x)" == self.F )) pass def test_element_factorial(self): s = wrapMathML("<apply><factorial/><cn> 5 </cn></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "factorial(5)" == self.F )) + self.assertTrue(( "factorial(5)" == self.F )) pass def test_element_floor(self): s = wrapMathML("<apply><floor/><cn> 1.2 </cn></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "floor(1.2)" == self.F )) + self.assertTrue(( "floor(1.2)" == self.F )) pass def test_element_function_call_1(self): s = wrapMathML("<apply> <ci> foo </ci> <ci> x </ci> </apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "foo(x)" == self.F )) + self.assertTrue(( "foo(x)" == self.F )) pass def test_element_function_call_2(self): @@ -664,18 +664,18 @@ def test_element_function_call_2(self): " <apply> <ci> f </ci> <ci> x </ci> </apply>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "1 + f(x)" == self.F )) + self.assertTrue(( "1 + f(x)" == self.F )) pass def test_element_geq(self): s = wrapMathML("<apply> <geq/> <cn>1</cn> <ci>x</ci> <cn>0</cn> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "geq(1, x, 0)" == self.F )) + self.assertTrue(( "geq(1, x, 0)" == self.F )) pass def test_element_gt(self): @@ -683,9 +683,9 @@ def test_element_gt(self): " <apply> <minus/> <infinity/> <cn>1</cn> </apply>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "gt(INF, INF - 1)" == self.F )) + self.assertTrue(( "gt(INF, INF - 1)" == self.F )) pass def test_element_invalid_mathml(self): @@ -698,9 +698,9 @@ def test_element_invalid_mathml(self): "</apply>" + "</lambda>\n") self.N = libsbml.readMathMLFromString(None) - self.assert_( self.N == None ) + self.assertTrue( self.N == None ) # self.N = libsbml.readMathMLFromString(invalid) - # self.assert_( self.N != None ) + # self.assertTrue( self.N != None ) pass def test_element_lambda(self): @@ -711,26 +711,26 @@ def test_element_lambda(self): " </apply>" + "</lambda>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "lambda(x, sin(x + 1))" == self.F )) + self.assertTrue(( "lambda(x, sin(x + 1))" == self.F )) pass def test_element_leq(self): s = wrapMathML("<apply> <leq/> <cn>0</cn> <ci>x</ci> <cn>1</cn> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "leq(0, x, 1)" == self.F )) + self.assertTrue(( "leq(0, x, 1)" == self.F )) pass def test_element_ln(self): s = wrapMathML("<apply><ln/><ci> a </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "log(a)" == self.F )) + self.assertTrue(( "log(a)" == self.F )) pass def test_element_log_1(self): @@ -738,17 +738,17 @@ def test_element_log_1(self): " <ci> x </ci>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "log(3, x)" == self.F )) + self.assertTrue(( "log(3, x)" == self.F )) pass def test_element_log_2(self): s = wrapMathML("<apply> <log/> <ci> x </ci> </apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "log10(x)" == self.F )) + self.assertTrue(( "log10(x)" == self.F )) pass def test_element_lt(self): @@ -756,61 +756,61 @@ def test_element_lt(self): " <cn>1</cn>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "lt(INF - INF, 1)" == self.F )) + self.assertTrue(( "lt(INF - INF, 1)" == self.F )) pass def test_element_math(self): s = wrapXML("<math xmlns='http://www.w3.org/1998/Math/MathML'/>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) - self.assert_( self.N.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( self.N != None ) + self.assertTrue( self.N.getType() == libsbml.AST_UNKNOWN ) pass def test_element_neq(self): s = wrapMathML("<apply> <neq/> <notanumber/> <notanumber/> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "neq(NaN, NaN)" == self.F )) + self.assertTrue(( "neq(NaN, NaN)" == self.F )) pass def test_element_not(self): s = wrapMathML("<apply> <not/> <ci> TooShabby </ci> </apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "not(TooShabby)" == self.F )) + self.assertTrue(( "not(TooShabby)" == self.F )) pass def test_element_operator_plus(self): s = wrapMathML("<apply> <plus/> <cn> 1 </cn> <cn> 2 </cn> <cn> 3 </cn> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "1 + 2 + 3" == self.F )) + self.assertTrue(( "1 + 2 + 3" == self.F )) pass def test_element_operator_times(self): s = wrapMathML("<apply> <times/> <ci> x </ci> <ci> y </ci> <ci> z </ci> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "x * y * z" == self.F )) + self.assertTrue(( "x * y * z" == self.F )) pass def test_element_or(self): s = wrapMathML("<apply> <or/> <ci>a</ci> <ci>b</ci> <ci>c</ci> <ci>d</ci> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "or(a, b, c, d)" == self.F )) + self.assertTrue(( "or(a, b, c, d)" == self.F )) pass def test_element_piecewise(self): @@ -829,9 +829,9 @@ def test_element_piecewise(self): " </piece>" + "</piecewise>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "piecewise(-x, lt(x, 0), 0, eq(x, 0), x, gt(x, 0))" == self.F )) + self.assertTrue(( "piecewise(-x, lt(x, 0), 0, eq(x, 0), x, gt(x, 0))" == self.F )) pass def test_element_piecewise_otherwise(self): @@ -845,17 +845,17 @@ def test_element_piecewise_otherwise(self): " </otherwise>" + "</piecewise>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "piecewise(0, lt(x, 0), x)" == self.F )) + self.assertTrue(( "piecewise(0, lt(x, 0), x)" == self.F )) pass def test_element_power(self): s = wrapMathML("<apply><power/> <ci>x</ci> <cn>3</cn> </apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "pow(x, 3)" == self.F )) + self.assertTrue(( "pow(x, 3)" == self.F )) pass def test_element_root_1(self): @@ -863,74 +863,74 @@ def test_element_root_1(self): " <ci> a </ci>" + "</apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "root(3, a)" == self.F )) + self.assertTrue(( "root(3, a)" == self.F )) pass def test_element_root_2(self): s = wrapMathML("<apply> <root/> <ci> a </ci> </apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "sqrt(a)" == self.F )) + self.assertTrue(( "sqrt(a)" == self.F )) pass def test_element_sec(self): s = wrapMathML("<apply><sec/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "sec(x)" == self.F )) + self.assertTrue(( "sec(x)" == self.F )) pass def test_element_sech(self): s = wrapMathML("<apply><sech/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "sech(x)" == self.F )) + self.assertTrue(( "sech(x)" == self.F )) pass def test_element_sin(self): s = wrapMathML("<apply><sin/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "sin(x)" == self.F )) + self.assertTrue(( "sin(x)" == self.F )) pass def test_element_sinh(self): s = wrapMathML("<apply><sinh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "sinh(x)" == self.F )) + self.assertTrue(( "sinh(x)" == self.F )) pass def test_element_tan(self): s = wrapMathML("<apply><tan/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "tan(x)" == self.F )) + self.assertTrue(( "tan(x)" == self.F )) pass def test_element_tanh(self): s = wrapMathML("<apply><tanh/><ci> x </ci></apply>") self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "tanh(x)" == self.F )) + self.assertTrue(( "tanh(x)" == self.F )) pass def test_element_xor(self): s = wrapMathML("<apply> <xor/> <ci>a</ci> <ci>b</ci> <ci>b</ci> <ci>a</ci> </apply>" ) self.N = libsbml.readMathMLFromString(s) - self.assert_( self.N != None ) + self.assertTrue( self.N != None ) self.F = libsbml.formulaToString(self.N) - self.assert_(( "xor(a, b, b, a)" == self.F )) + self.assertTrue(( "xor(a, b, b, a)" == self.F )) pass def suite(): diff --git a/src/bindings/python/test/math/TestValidASTNode.py b/src/bindings/python/test/math/TestValidASTNode.py index 74de660dab..22464f69e6 100644 --- a/src/bindings/python/test/math/TestValidASTNode.py +++ b/src/bindings/python/test/math/TestValidASTNode.py @@ -42,7 +42,7 @@ def test_ValidASTNode_Name(self): self.assertEqual( True, n.isWellFormedASTNode() ) #d = libsbml.parseFormula("d") #i = n.addChild(d) - #self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + #self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) n = None pass @@ -51,7 +51,7 @@ def test_ValidASTNode_Number(self): self.assertEqual( True, n.isWellFormedASTNode() ) #d = libsbml.parseFormula("d") #i = n.addChild(d) - #self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + #self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) n = None pass @@ -73,10 +73,10 @@ def test_ValidASTNode_infix_nary_plus0(self): " <plus/>" + " </apply>" + "</math>") - self.assert_( n != None ) + self.assertTrue( n != None ) formula = libsbml.formulaToString(n) node = libsbml.parseFormula(formula) - self.assert_( node != None ) + self.assertTrue( node != None ) n = None node = None pass @@ -88,10 +88,10 @@ def test_ValidASTNode_infix_nary_plus1(self): " <cn> 0 </cn>" + " </apply>" + "</math>") - self.assert_( n != None ) + self.assertTrue( n != None ) formula = libsbml.formulaToString(n) node = libsbml.parseFormula(formula) - self.assert_( node != None ) + self.assertTrue( node != None ) n = None node = None pass @@ -102,10 +102,10 @@ def test_ValidASTNode_infix_nary_times0(self): " <times/>" + " </apply>" + "</math>") - self.assert_( n != None ) + self.assertTrue( n != None ) formula = libsbml.formulaToString(n) node = libsbml.parseFormula(formula) - self.assert_( node != None ) + self.assertTrue( node != None ) n = None node = None pass @@ -117,10 +117,10 @@ def test_ValidASTNode_infix_nary_times1(self): " <cn> 0 </cn>" + " </apply>" + "</math>") - self.assert_( n != None ) + self.assertTrue( n != None ) formula = libsbml.formulaToString(n) node = libsbml.parseFormula(formula) - self.assert_( node != None ) + self.assertTrue( node != None ) n = None node = None pass @@ -210,18 +210,18 @@ def test_ValidASTNode_root(self): def test_ValidASTNode_setType(self): n = libsbml.ASTNode() i = n.setType(libsbml.AST_REAL) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n.getType() == libsbml.AST_REAL ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n.getType() == libsbml.AST_REAL ) i = n.setType(libsbml.AST_PLUS) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n.getType() == libsbml.AST_PLUS ) - self.assert_( n.getCharacter() == '+' ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n.getType() == libsbml.AST_PLUS ) + self.assertTrue( n.getCharacter() == '+' ) i = n.setType(libsbml.AST_FUNCTION_ARCCOSH) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( n.getType() == libsbml.AST_FUNCTION_ARCCOSH ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( n.getType() == libsbml.AST_FUNCTION_ARCCOSH ) i = n.setType(libsbml.AST_UNKNOWN) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( n.getType() == libsbml.AST_UNKNOWN ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( n.getType() == libsbml.AST_UNKNOWN ) n = None pass diff --git a/src/bindings/python/test/sbml/TestAlgebraicRule.py b/src/bindings/python/test/sbml/TestAlgebraicRule.py index 085ff4249b..d9136ccb13 100644 --- a/src/bindings/python/test/sbml/TestAlgebraicRule.py +++ b/src/bindings/python/test/sbml/TestAlgebraicRule.py @@ -50,25 +50,25 @@ def tearDown(self): pass def test_AlgebraicRule_create(self): - self.assert_( self.AR.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) - self.assert_( self.AR.getMetaId() == "" ) - self.assert_( self.AR.getNotes() == None ) - self.assert_( self.AR.getAnnotation() == None ) - self.assert_( self.AR.getFormula() == "" ) - self.assert_( self.AR.getMath() == None ) + self.assertTrue( self.AR.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) + self.assertTrue( self.AR.getMetaId() == "" ) + self.assertTrue( self.AR.getNotes() == None ) + self.assertTrue( self.AR.getAnnotation() == None ) + self.assertTrue( self.AR.getFormula() == "" ) + self.assertTrue( self.AR.getMath() == None ) pass def test_AlgebraicRule_createWithFormula(self): ar = libsbml.AlgebraicRule(2,4) ar.setFormula( "1 + 1") - self.assert_( ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) - self.assert_( ar.getMetaId() == "" ) + self.assertTrue( ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) + self.assertTrue( ar.getMetaId() == "" ) math = ar.getMath() - self.assert_( math != None ) + self.assertTrue( math != None ) formula = libsbml.formulaToString(math) - self.assert_( formula != None ) - self.assert_(( "1 + 1" == formula )) - self.assert_(( formula == ar.getFormula() )) + self.assertTrue( formula != None ) + self.assertTrue(( "1 + 1" == formula )) + self.assertTrue(( formula == ar.getFormula() )) _dummyList = [ ar ]; _dummyList[:] = []; del _dummyList pass @@ -76,10 +76,10 @@ def test_AlgebraicRule_createWithMath(self): math = libsbml.parseFormula("1 + 1") ar = libsbml.AlgebraicRule(2,4) ar.setMath(math) - self.assert_( ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) - self.assert_( ar.getMetaId() == "" ) - self.assert_(( "1 + 1" == ar.getFormula() )) - self.assert_( ar.getMath() != math ) + self.assertTrue( ar.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) + self.assertTrue( ar.getMetaId() == "" ) + self.assertTrue(( "1 + 1" == ar.getFormula() )) + self.assertTrue( ar.getMath() != math ) _dummyList = [ ar ]; _dummyList[:] = []; del _dummyList pass @@ -89,14 +89,14 @@ def test_AlgebraicRule_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,3) sbmlns.addNamespaces(xmlns) r = libsbml.AlgebraicRule(sbmlns) - self.assert_( r.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) - self.assert_( r.getMetaId() == "" ) - self.assert_( r.getNotes() == None ) - self.assert_( r.getAnnotation() == None ) - self.assert_( r.getLevel() == 2 ) - self.assert_( r.getVersion() == 3 ) - self.assert_( r.getNamespaces() != None ) - self.assert_( r.getNamespaces().getLength() == 2 ) + self.assertTrue( r.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) + self.assertTrue( r.getMetaId() == "" ) + self.assertTrue( r.getNotes() == None ) + self.assertTrue( r.getAnnotation() == None ) + self.assertTrue( r.getLevel() == 2 ) + self.assertTrue( r.getVersion() == 3 ) + self.assertTrue( r.getNamespaces() != None ) + self.assertTrue( r.getNamespaces().getLength() == 2 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestAncestor.py b/src/bindings/python/test/sbml/TestAncestor.py index 0555637429..8be43f0502 100644 --- a/src/bindings/python/test/sbml/TestAncestor.py +++ b/src/bindings/python/test/sbml/TestAncestor.py @@ -41,30 +41,30 @@ def test_AlgebraicRule_ancestor_create(self): m = libsbml.Model(2,4) r = m.createAlgebraicRule() lo = m.getListOfRules() - self.assert_( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getRule(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_AssignmentRule_ancestor_create(self): m = libsbml.Model(2,4) r = m.createAssignmentRule() lo = m.getListOfRules() - self.assert_( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getRule(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_CompartmentType_ancestor_add(self): @@ -75,25 +75,25 @@ def test_CompartmentType_ancestor_add(self): ct = None lo = m.getListOfCompartmentTypes() obj = m.getCompartmentType(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_CompartmentType_ancestor_create(self): m = libsbml.Model(2,4) ct = m.createCompartmentType() lo = m.getListOfCompartmentTypes() - self.assert_( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getCompartmentType(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Compartment_ancestor_add(self): @@ -104,25 +104,25 @@ def test_Compartment_ancestor_add(self): c = None lo = m.getListOfCompartments() obj = m.getCompartment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Compartment_ancestor_create(self): m = libsbml.Model(2,4) c = m.createCompartment() lo = m.getListOfCompartments() - self.assert_( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( c.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getCompartment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Constraint_ancestor_add(self): @@ -133,25 +133,25 @@ def test_Constraint_ancestor_add(self): ct = None lo = m.getListOfConstraints() obj = m.getConstraint(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Constraint_ancestor_create(self): m = libsbml.Model(2,4) ct = m.createConstraint() lo = m.getListOfConstraints() - self.assert_( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ct.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ct.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getConstraint(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Delay_ancestor_add(self): @@ -161,37 +161,37 @@ def test_Delay_ancestor_add(self): e.setDelay(d) d = None obj = e.getDelay() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) e = None pass def test_Delay_ancestor_create(self): e = libsbml.Event(2,4) ea = e.createDelay() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getDelay() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_Delay_ancestor_create_model(self): m = libsbml.Model(2,4) e = m.createEvent() ea = m.createDelay() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getDelay() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_EventAssignment_ancestor_add(self): @@ -203,25 +203,25 @@ def test_EventAssignment_ancestor_add(self): ea = None lo = e.getListOfEventAssignments() obj = e.getEventAssignment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_EventAssignment_ancestor_create(self): e = libsbml.Event(2,4) ea = e.createEventAssignment() lo = e.getListOfEventAssignments() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getEventAssignment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_EventAssignment_ancestor_create_model(self): @@ -229,17 +229,17 @@ def test_EventAssignment_ancestor_create_model(self): e = m.createEvent() ea = m.createEventAssignment() lo = e.getListOfEventAssignments() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getEventAssignment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_Event_ancestor_add(self): @@ -253,25 +253,25 @@ def test_Event_ancestor_add(self): e = None lo = m.getListOfEvents() obj = m.getEvent(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_Event_ancestor_create(self): m = libsbml.Model(2,4) e = m.createEvent() lo = m.getListOfEvents() - self.assert_( e.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( e.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( e.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( e.getAncestorOfType(libsbml.SBML_PARAMETER) == None ) + self.assertTrue( e.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( e.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( e.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( e.getAncestorOfType(libsbml.SBML_PARAMETER) == None ) obj = m.getEvent(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_FunctionDefinition_ancestor_add(self): @@ -283,25 +283,25 @@ def test_FunctionDefinition_ancestor_add(self): fd = None lo = m.getListOfFunctionDefinitions() obj = m.getFunctionDefinition(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_FunctionDefinition_ancestor_create(self): m = libsbml.Model(2,4) fd = m.createFunctionDefinition() lo = m.getListOfFunctionDefinitions() - self.assert_( fd.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( fd.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( fd.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( fd.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( fd.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( fd.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( fd.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( fd.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getFunctionDefinition(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_InitialAssignment_ancestor_add(self): @@ -313,25 +313,25 @@ def test_InitialAssignment_ancestor_add(self): ia = None lo = m.getListOfInitialAssignments() obj = m.getInitialAssignment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_InitialAssignment_ancestor_create(self): m = libsbml.Model(2,4) ia = m.createInitialAssignment() lo = m.getListOfInitialAssignments() - self.assert_( ia.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ia.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ia.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ia.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( ia.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ia.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ia.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ia.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getInitialAssignment(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_KineticLaw_Parameter_ancestor_add(self): @@ -342,27 +342,27 @@ def test_KineticLaw_Parameter_ancestor_add(self): p = None lop = kl.getListOfParameters() obj = kl.getParameter(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) kl = None pass def test_KineticLaw_Parameter_ancestor_create(self): kl = libsbml.KineticLaw(2,4) p = kl.createParameter() - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 1 ) lop = kl.getListOfParameters() - self.assert_( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) - self.assert_( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) - self.assert_( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = kl.getParameter(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) kl = None pass @@ -371,21 +371,21 @@ def test_KineticLaw_Parameter_ancestor_create_model(self): r = m.createReaction() kl = m.createKineticLaw() p = m.createKineticLawParameter() - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 1 ) lop = kl.getListOfParameters() - self.assert_( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) - self.assert_( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) - self.assert_( p.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( p.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = kl.getParameter(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) kl = None pass @@ -395,24 +395,24 @@ def test_KineticLaw_ancestor_add(self): r = libsbml.Reaction(2,4) r.setKineticLaw(kl) obj = r.getKineticLaw() - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) r = None pass def test_KineticLaw_ancestor_create(self): r = libsbml.Reaction(2,4) kl = r.createKineticLaw() - self.assert_( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_DELAY) == None ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == None ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) obj = r.getKineticLaw() - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DELAY) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) r = None pass @@ -420,15 +420,15 @@ def test_KineticLaw_ancestor_create_model(self): m = libsbml.Model(2,4) r = m.createReaction() kl = r.createKineticLaw() - self.assert_( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_DELAY) == None ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_DELAY) == None ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) obj = r.getKineticLaw() - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DELAY) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DELAY) == None ) r = None pass @@ -436,16 +436,16 @@ def test_Model_ancestor_add(self): d = libsbml.SBMLDocument(2,4) m = libsbml.Model(2,4) d.setModel(m) - self.assert_( d == d.getModel().getAncestorOfType(libsbml.SBML_DOCUMENT) ) + self.assertTrue( d == d.getModel().getAncestorOfType(libsbml.SBML_DOCUMENT) ) d = None pass def test_Model_ancestor_create(self): d = libsbml.SBMLDocument() m = d.createModel() - self.assert_( m.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ) + self.assertTrue( m.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ) obj = d.getModel() - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == d ) d = None pass @@ -457,40 +457,40 @@ def test_Parameter_ancestor_add(self): ia = None lo = m.getListOfParameters() obj = m.getParameter(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Parameter_ancestor_create(self): m = libsbml.Model(2,4) p = m.createParameter() lo = m.getListOfParameters() - self.assert_( p.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( p.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( p.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getParameter(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_RateRule_ancestor_create(self): m = libsbml.Model(2,4) r = m.createRateRule() lo = m.getListOfRules() - self.assert_( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getRule(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Reaction_ancestor_add(self): @@ -501,25 +501,25 @@ def test_Reaction_ancestor_add(self): ia = None lo = m.getListOfReactions() obj = m.getReaction(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Reaction_ancestor_create(self): m = libsbml.Model(2,4) r = m.createReaction() lo = m.getListOfReactions() - self.assert_( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( r.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getReaction(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Rule_ancestor_add(self): @@ -531,10 +531,10 @@ def test_Rule_ancestor_add(self): ia = None lo = m.getListOfRules() obj = m.getRule(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_SpeciesReference_Modifier_ancestor_add(self): @@ -545,25 +545,25 @@ def test_SpeciesReference_Modifier_ancestor_add(self): sr = None lo = r.getListOfModifiers() obj = r.getModifier(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Modifier_ancestor_create(self): r = libsbml.Reaction(2,4) sr = r.createModifier() lo = r.getListOfModifiers() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getModifier(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Modifier_ancestor_create_model(self): @@ -571,17 +571,17 @@ def test_SpeciesReference_Modifier_ancestor_create_model(self): r = m.createReaction() sr = m.createModifier() lo = r.getListOfModifiers() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getModifier(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Product_ancestor_add(self): @@ -592,25 +592,25 @@ def test_SpeciesReference_Product_ancestor_add(self): sr = None lo = r.getListOfProducts() obj = r.getProduct(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Product_ancestor_create(self): r = libsbml.Reaction(2,4) sr = r.createProduct() lo = r.getListOfProducts() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getProduct(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Product_ancestor_create_model(self): @@ -618,17 +618,17 @@ def test_SpeciesReference_Product_ancestor_create_model(self): r = m.createReaction() sr = m.createProduct() lo = r.getListOfProducts() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getProduct(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Reactant_ancestor_add(self): @@ -639,25 +639,25 @@ def test_SpeciesReference_Reactant_ancestor_add(self): sr = None lo = r.getListOfReactants() obj = r.getReactant(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Reactant_ancestor_create(self): r = libsbml.Reaction(2,4) sr = r.createReactant() lo = r.getListOfReactants() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getReactant(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesReference_Reactant_ancestor_create_model(self): @@ -665,17 +665,17 @@ def test_SpeciesReference_Reactant_ancestor_create_model(self): r = m.createReaction() sr = m.createReactant() lo = r.getListOfReactants() - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = r.getReactant(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_REACTION) == r ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_SpeciesType_ancestor_add(self): @@ -686,25 +686,25 @@ def test_SpeciesType_ancestor_add(self): ia = None lo = m.getListOfSpeciesTypes() obj = m.getSpeciesType(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_SpeciesType_ancestor_create(self): m = libsbml.Model(2,4) st = m.createSpeciesType() lo = m.getListOfSpeciesTypes() - self.assert_( st.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( st.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( st.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( st.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( st.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( st.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( st.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( st.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getSpeciesType(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Species_ancestor_add(self): @@ -716,25 +716,25 @@ def test_Species_ancestor_add(self): ia = None lo = m.getListOfSpecies() obj = m.getSpecies(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Species_ancestor_create(self): m = libsbml.Model(2,4) s = m.createSpecies() lo = m.getListOfSpecies() - self.assert_( s.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( s.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( s.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( s.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( s.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( s.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getSpecies(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_StoichiometryMath_ancestor_add(self): @@ -744,22 +744,22 @@ def test_StoichiometryMath_ancestor_add(self): sr.setStoichiometryMath(m) m = None obj = sr.getStoichiometryMath() - self.assert_( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) sr = None pass def test_StoichiometryMath_ancestor_create(self): sr = libsbml.SpeciesReference(2,4) sm = sr.createStoichiometryMath() - self.assert_( sm.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) - self.assert_( sm.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( sm.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( sm.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) + self.assertTrue( sm.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( sm.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = sr.getStoichiometryMath() - self.assert_( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_SPECIES_REFERENCE) == sr ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_Trigger_ancestor_add(self): @@ -769,37 +769,37 @@ def test_Trigger_ancestor_add(self): e.setTrigger(d) d = None obj = e.getTrigger() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) e = None pass def test_Trigger_ancestor_create(self): e = libsbml.Event(2,4) ea = e.createTrigger() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getTrigger() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_Trigger_ancestor_create_model(self): m = libsbml.Model(2,4) e = m.createEvent() ea = m.createTrigger() - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = e.getTrigger() - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) pass def test_UnitDefinition_ancestor_add(self): @@ -811,25 +811,25 @@ def test_UnitDefinition_ancestor_add(self): ia = None lo = m.getListOfUnitDefinitions() obj = m.getUnitDefinition(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_UnitDefinition_ancestor_create(self): m = libsbml.Model(2,4) ud = m.createUnitDefinition() lo = m.getListOfUnitDefinitions() - self.assert_( ud.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( ud.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( ud.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( ud.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( ud.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( ud.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( ud.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( ud.getAncestorOfType(libsbml.SBML_EVENT) == None ) obj = m.getUnitDefinition(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == None ) pass def test_Unit_ancestor_add(self): @@ -838,30 +838,30 @@ def test_Unit_ancestor_add(self): u.setKind(libsbml.UNIT_KIND_MOLE) ud.addUnit(u) u = None - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() obj = ud.getUnit(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) ud = None pass def test_Unit_ancestor_create(self): ud = libsbml.UnitDefinition(2,4) u = ud.createUnit() - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() - self.assert_( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) - self.assert_( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = ud.getUnit(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) ud = None pass @@ -869,19 +869,19 @@ def test_Unit_ancestor_create_model(self): m = libsbml.Model(2,4) ud = m.createUnitDefinition() u = m.createUnit() - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() - self.assert_( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) - self.assert_( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( u.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) obj = ud.getUnit(0) - self.assert_( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) ud = None pass diff --git a/src/bindings/python/test/sbml/TestAssignmentRule.py b/src/bindings/python/test/sbml/TestAssignmentRule.py index ceb3e59da8..5b26f64060 100644 --- a/src/bindings/python/test/sbml/TestAssignmentRule.py +++ b/src/bindings/python/test/sbml/TestAssignmentRule.py @@ -50,29 +50,29 @@ def tearDown(self): pass def test_AssignmentRule_L2_create(self): - self.assert_( self.AR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( self.AR.getMetaId() == "" ) - self.assert_( self.AR.getNotes() == None ) - self.assert_( self.AR.getAnnotation() == None ) - self.assert_( self.AR.getFormula() == "" ) - self.assert_( self.AR.getMath() == None ) - self.assert_( self.AR.getVariable() == "" ) - self.assert_( self.AR.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue( self.AR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( self.AR.getMetaId() == "" ) + self.assertTrue( self.AR.getNotes() == None ) + self.assertTrue( self.AR.getAnnotation() == None ) + self.assertTrue( self.AR.getFormula() == "" ) + self.assertTrue( self.AR.getMath() == None ) + self.assertTrue( self.AR.getVariable() == "" ) + self.assertTrue( self.AR.getType() == libsbml.RULE_TYPE_SCALAR ) pass def test_AssignmentRule_createWithFormula(self): ar = libsbml.AssignmentRule(2,4) ar.setVariable( "s") ar.setFormula( "1 + 1") - self.assert_( ar.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( ar.getMetaId() == "" ) - self.assert_(( "s" == ar.getVariable() )) + self.assertTrue( ar.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( ar.getMetaId() == "" ) + self.assertTrue(( "s" == ar.getVariable() )) math = ar.getMath() - self.assert_( math != None ) + self.assertTrue( math != None ) formula = libsbml.formulaToString(math) - self.assert_( formula != None ) - self.assert_(( "1 + 1" == formula )) - self.assert_(( formula == ar.getFormula() )) + self.assertTrue( formula != None ) + self.assertTrue(( "1 + 1" == formula )) + self.assertTrue(( formula == ar.getFormula() )) _dummyList = [ ar ]; _dummyList[:] = []; del _dummyList pass @@ -81,11 +81,11 @@ def test_AssignmentRule_createWithMath(self): ar = libsbml.AssignmentRule(2,4) ar.setVariable( "s") ar.setMath(math) - self.assert_( ar.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( ar.getMetaId() == "" ) - self.assert_(( "s" == ar.getVariable() )) - self.assert_(( "1 + 1" == ar.getFormula() )) - self.assert_( ar.getMath() != math ) + self.assertTrue( ar.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( ar.getMetaId() == "" ) + self.assertTrue(( "s" == ar.getVariable() )) + self.assertTrue(( "1 + 1" == ar.getFormula() )) + self.assertTrue( ar.getMath() != math ) _dummyList = [ ar ]; _dummyList[:] = []; del _dummyList pass @@ -95,14 +95,14 @@ def test_AssignmentRule_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.AssignmentRule(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -113,12 +113,12 @@ def test_AssignmentRule_free_NULL(self): def test_AssignmentRule_setVariable(self): variable = "x"; self.AR.setVariable(variable) - self.assert_(( variable == self.AR.getVariable() )) + self.assertTrue(( variable == self.AR.getVariable() )) self.assertEqual( True, self.AR.isSetVariable() ) if (self.AR.getVariable() == variable): pass self.AR.setVariable(self.AR.getVariable()) - self.assert_(( variable == self.AR.getVariable() )) + self.assertTrue(( variable == self.AR.getVariable() )) self.AR.setVariable("") self.assertEqual( False, self.AR.isSetVariable() ) if (self.AR.getVariable() != None): diff --git a/src/bindings/python/test/sbml/TestCompartment.py b/src/bindings/python/test/sbml/TestCompartment.py index f300b777b6..e473b1874e 100644 --- a/src/bindings/python/test/sbml/TestCompartment.py +++ b/src/bindings/python/test/sbml/TestCompartment.py @@ -50,17 +50,17 @@ def tearDown(self): pass def test_Compartment_create(self): - self.assert_( self.C.getTypeCode() == libsbml.SBML_COMPARTMENT ) - self.assert_( self.C.getMetaId() == "" ) - self.assert_( self.C.getNotes() == None ) - self.assert_( self.C.getAnnotation() == None ) - self.assert_( self.C.getId() == "" ) - self.assert_( self.C.getName() == "" ) - self.assert_( self.C.getUnits() == "" ) - self.assert_( self.C.getOutside() == "" ) - self.assert_( self.C.getSpatialDimensions() == 3 ) - self.assert_( self.C.getVolume() == 1.0 ) - self.assert_( self.C.getConstant() == True ) + self.assertTrue( self.C.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( self.C.getMetaId() == "" ) + self.assertTrue( self.C.getNotes() == None ) + self.assertTrue( self.C.getAnnotation() == None ) + self.assertTrue( self.C.getId() == "" ) + self.assertTrue( self.C.getName() == "" ) + self.assertTrue( self.C.getUnits() == "" ) + self.assertTrue( self.C.getOutside() == "" ) + self.assertTrue( self.C.getSpatialDimensions() == 3 ) + self.assertTrue( self.C.getVolume() == 1.0 ) + self.assertTrue( self.C.getConstant() == True ) self.assertEqual( False, self.C.isSetId() ) self.assertEqual( False, self.C.isSetName() ) self.assertEqual( False, self.C.isSetSize() ) @@ -72,14 +72,14 @@ def test_Compartment_create(self): def test_Compartment_createWith(self): c = libsbml.Compartment(2,4) c.setId( "A") - self.assert_( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) - self.assert_( c.getMetaId() == "" ) - self.assert_( c.getNotes() == None ) - self.assert_( c.getAnnotation() == None ) - self.assert_( c.getName() == "" ) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_(( "A" == c.getId() )) - self.assert_( c.getConstant() == True ) + self.assertTrue( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( c.getMetaId() == "" ) + self.assertTrue( c.getNotes() == None ) + self.assertTrue( c.getAnnotation() == None ) + self.assertTrue( c.getName() == "" ) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue(( "A" == c.getId() )) + self.assertTrue( c.getConstant() == True ) self.assertEqual( True, c.isSetId() ) self.assertEqual( False, c.isSetName() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList @@ -91,17 +91,17 @@ def test_Compartment_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) c = libsbml.Compartment(sbmlns) - self.assert_( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) - self.assert_( c.getMetaId() == "" ) - self.assert_( c.getNotes() == None ) - self.assert_( c.getAnnotation() == None ) - self.assert_( c.getLevel() == 2 ) - self.assert_( c.getVersion() == 1 ) - self.assert_( c.getNamespaces() != None ) - self.assert_( c.getNamespaces().getLength() == 2 ) - self.assert_( c.getName() == "" ) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_( c.getConstant() == True ) + self.assertTrue( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( c.getMetaId() == "" ) + self.assertTrue( c.getNotes() == None ) + self.assertTrue( c.getAnnotation() == None ) + self.assertTrue( c.getLevel() == 2 ) + self.assertTrue( c.getVersion() == 1 ) + self.assertTrue( c.getNamespaces() != None ) + self.assertTrue( c.getNamespaces().getLength() == 2 ) + self.assertTrue( c.getName() == "" ) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue( c.getConstant() == True ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -111,17 +111,17 @@ def test_Compartment_free_NULL(self): def test_Compartment_getSpatialDimensions(self): self.C.setSpatialDimensions(1) - self.assert_( self.C.getSpatialDimensions() == 1 ) + self.assertTrue( self.C.getSpatialDimensions() == 1 ) pass def test_Compartment_getsetConstant(self): self.C.setConstant(True) - self.assert_( self.C.getConstant() == True ) + self.assertTrue( self.C.getConstant() == True ) pass def test_Compartment_getsetType(self): self.C.setCompartmentType( "cell") - self.assert_(( "cell" == self.C.getCompartmentType() )) + self.assertTrue(( "cell" == self.C.getCompartmentType() )) self.assertEqual( True, self.C.isSetCompartmentType() ) self.C.unsetCompartmentType() self.assertEqual( False, self.C.isSetCompartmentType() ) @@ -131,13 +131,13 @@ def test_Compartment_initDefaults(self): c = libsbml.Compartment(2,4) c.setId( "A") c.initDefaults() - self.assert_(( "A" == c.getId() )) - self.assert_( c.getName() == "" ) - self.assert_( c.getUnits() == "" ) - self.assert_( c.getOutside() == "" ) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_( c.getVolume() == 1.0 ) - self.assert_( c.getConstant() == True ) + self.assertTrue(( "A" == c.getId() )) + self.assertTrue( c.getName() == "" ) + self.assertTrue( c.getUnits() == "" ) + self.assertTrue( c.getOutside() == "" ) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue( c.getVolume() == 1.0 ) + self.assertTrue( c.getConstant() == True ) self.assertEqual( True, c.isSetId() ) self.assertEqual( False, c.isSetName() ) self.assertEqual( False, c.isSetSize() ) @@ -152,12 +152,12 @@ def test_Compartment_initDefaults(self): def test_Compartment_setId(self): id = "mitochondria"; self.C.setId(id) - self.assert_(( id == self.C.getId() )) + self.assertTrue(( id == self.C.getId() )) self.assertEqual( True, self.C.isSetId() ) if (self.C.getId() == id): pass self.C.setId(self.C.getId()) - self.assert_(( id == self.C.getId() )) + self.assertTrue(( id == self.C.getId() )) self.C.setId("") self.assertEqual( False, self.C.isSetId() ) if (self.C.getId() != None): @@ -167,12 +167,12 @@ def test_Compartment_setId(self): def test_Compartment_setName(self): name = "My_Favorite_Factory"; self.C.setName(name) - self.assert_(( name == self.C.getName() )) + self.assertTrue(( name == self.C.getName() )) self.assertEqual( True, self.C.isSetName() ) if (self.C.getName() == name): pass self.C.setName(self.C.getName()) - self.assert_(( name == self.C.getName() )) + self.assertTrue(( name == self.C.getName() )) self.C.setName("") self.assertEqual( False, self.C.isSetName() ) if (self.C.getName() != None): @@ -182,12 +182,12 @@ def test_Compartment_setName(self): def test_Compartment_setOutside(self): outside = "cell"; self.C.setOutside(outside) - self.assert_(( outside == self.C.getOutside() )) + self.assertTrue(( outside == self.C.getOutside() )) self.assertEqual( True, self.C.isSetOutside() ) if (self.C.getOutside() == outside): pass self.C.setOutside(self.C.getOutside()) - self.assert_(( outside == self.C.getOutside() )) + self.assertTrue(( outside == self.C.getOutside() )) self.C.setOutside("") self.assertEqual( False, self.C.isSetOutside() ) if (self.C.getOutside() != None): @@ -197,12 +197,12 @@ def test_Compartment_setOutside(self): def test_Compartment_setUnits(self): units = "volume"; self.C.setUnits(units) - self.assert_(( units == self.C.getUnits() )) + self.assertTrue(( units == self.C.getUnits() )) self.assertEqual( True, self.C.isSetUnits() ) if (self.C.getUnits() == units): pass self.C.setUnits(self.C.getUnits()) - self.assert_(( units == self.C.getUnits() )) + self.assertTrue(( units == self.C.getUnits() )) self.C.setUnits("") self.assertEqual( False, self.C.isSetUnits() ) if (self.C.getUnits() != None): @@ -211,7 +211,7 @@ def test_Compartment_setUnits(self): def test_Compartment_unsetSize(self): self.C.setSize(0.2) - self.assert_( self.C.getSize() == 0.2 ) + self.assertTrue( self.C.getSize() == 0.2 ) self.assertEqual( True, self.C.isSetSize() ) self.C.unsetSize() self.assertEqual( False, self.C.isSetSize() ) @@ -219,7 +219,7 @@ def test_Compartment_unsetSize(self): def test_Compartment_unsetVolume(self): self.C.setVolume(1.0) - self.assert_( self.C.getVolume() == 1.0 ) + self.assertTrue( self.C.getVolume() == 1.0 ) self.C.unsetVolume() self.assertEqual( False, self.C.isSetVolume() ) pass diff --git a/src/bindings/python/test/sbml/TestCompartmentType.py b/src/bindings/python/test/sbml/TestCompartmentType.py index 86c9cc8e5a..9b787e63c4 100644 --- a/src/bindings/python/test/sbml/TestCompartmentType.py +++ b/src/bindings/python/test/sbml/TestCompartmentType.py @@ -50,12 +50,12 @@ def tearDown(self): pass def test_CompartmentType_create(self): - self.assert_( self.CT.getTypeCode() == libsbml.SBML_COMPARTMENT_TYPE ) - self.assert_( self.CT.getMetaId() == "" ) - self.assert_( self.CT.getNotes() == None ) - self.assert_( self.CT.getAnnotation() == None ) - self.assert_( self.CT.getId() == "" ) - self.assert_( self.CT.getName() == "" ) + self.assertTrue( self.CT.getTypeCode() == libsbml.SBML_COMPARTMENT_TYPE ) + self.assertTrue( self.CT.getMetaId() == "" ) + self.assertTrue( self.CT.getNotes() == None ) + self.assertTrue( self.CT.getAnnotation() == None ) + self.assertTrue( self.CT.getId() == "" ) + self.assertTrue( self.CT.getName() == "" ) self.assertEqual( False, self.CT.isSetId() ) self.assertEqual( False, self.CT.isSetName() ) pass @@ -66,14 +66,14 @@ def test_CompartmentType_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,2) sbmlns.addNamespaces(xmlns) object = libsbml.CompartmentType(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_COMPARTMENT_TYPE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 2 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_COMPARTMENT_TYPE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 2 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -84,12 +84,12 @@ def test_CompartmentType_free_NULL(self): def test_CompartmentType_setId(self): id = "mitochondria"; self.CT.setId(id) - self.assert_(( id == self.CT.getId() )) + self.assertTrue(( id == self.CT.getId() )) self.assertEqual( True, self.CT.isSetId() ) if (self.CT.getId() == id): pass self.CT.setId(self.CT.getId()) - self.assert_(( id == self.CT.getId() )) + self.assertTrue(( id == self.CT.getId() )) self.CT.setId("") self.assertEqual( False, self.CT.isSetId() ) if (self.CT.getId() != None): @@ -99,12 +99,12 @@ def test_CompartmentType_setId(self): def test_CompartmentType_setName(self): name = "My_Favorite_Factory"; self.CT.setName(name) - self.assert_(( name == self.CT.getName() )) + self.assertTrue(( name == self.CT.getName() )) self.assertEqual( True, self.CT.isSetName() ) if (self.CT.getName() == name): pass self.CT.setName(self.CT.getName()) - self.assert_(( name == self.CT.getName() )) + self.assertTrue(( name == self.CT.getName() )) self.CT.setName("") self.assertEqual( False, self.CT.isSetName() ) if (self.CT.getName() != None): @@ -113,7 +113,7 @@ def test_CompartmentType_setName(self): def test_CompartmentType_unsetName(self): self.CT.setName( "name") - self.assert_(( "name" == self.CT.getName() )) + self.assertTrue(( "name" == self.CT.getName() )) self.assertEqual( True, self.CT.isSetName() ) self.CT.unsetName() self.assertEqual( False, self.CT.isSetName() ) diff --git a/src/bindings/python/test/sbml/TestCompartmentType_newSetters.py b/src/bindings/python/test/sbml/TestCompartmentType_newSetters.py index 33a34839d0..84f5e9e56a 100644 --- a/src/bindings/python/test/sbml/TestCompartmentType_newSetters.py +++ b/src/bindings/python/test/sbml/TestCompartmentType_newSetters.py @@ -51,44 +51,44 @@ def tearDown(self): def test_CompartmentType_setId2(self): i = self.C.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.C.isSetId() ) pass def test_CompartmentType_setId3(self): i = self.C.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetId() ) - self.assert_(( "cell" == self.C.getId() )) + self.assertTrue(( "cell" == self.C.getId() )) pass def test_CompartmentType_setId4(self): i = self.C.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetId() ) pass def test_CompartmentType_setName1(self): i = self.C.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetName() ) i = self.C.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_CompartmentType_setName2(self): i = self.C.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetName() ) i = self.C.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_CompartmentType_setName3(self): i = self.C.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass diff --git a/src/bindings/python/test/sbml/TestCompartmentVolumeRule.py b/src/bindings/python/test/sbml/TestCompartmentVolumeRule.py index dce4ae77c6..7ae5f3fde0 100644 --- a/src/bindings/python/test/sbml/TestCompartmentVolumeRule.py +++ b/src/bindings/python/test/sbml/TestCompartmentVolumeRule.py @@ -51,13 +51,13 @@ def tearDown(self): pass def test_CompartmentVolumeRule_create(self): - self.assert_( self.CVR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( self.CVR.getL1TypeCode() == libsbml.SBML_COMPARTMENT_VOLUME_RULE ) - self.assert_( self.CVR.getNotes() == None ) - self.assert_( self.CVR.getAnnotation() == None ) - self.assert_( self.CVR.getFormula() == "" ) - self.assert_( self.CVR.getType() == libsbml.RULE_TYPE_SCALAR ) - self.assert_( self.CVR.getVariable() == "" ) + self.assertTrue( self.CVR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( self.CVR.getL1TypeCode() == libsbml.SBML_COMPARTMENT_VOLUME_RULE ) + self.assertTrue( self.CVR.getNotes() == None ) + self.assertTrue( self.CVR.getAnnotation() == None ) + self.assertTrue( self.CVR.getFormula() == "" ) + self.assertTrue( self.CVR.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue( self.CVR.getVariable() == "" ) self.assertEqual( False, self.CVR.isSetVariable() ) pass @@ -68,13 +68,13 @@ def test_CompartmentVolumeRule_free_NULL(self): def test_CompartmentVolumeRule_setCompartment(self): compartment = "cell"; self.CVR.setVariable(compartment) - self.assert_(( compartment == self.CVR.getVariable() )) + self.assertTrue(( compartment == self.CVR.getVariable() )) self.assertEqual( True, self.CVR.isSetVariable() ) if (self.CVR.getVariable() == compartment): pass c = self.CVR.getVariable() self.CVR.setVariable(c) - self.assert_(( compartment == self.CVR.getVariable() )) + self.assertTrue(( compartment == self.CVR.getVariable() )) self.CVR.setVariable("") self.assertEqual( False, self.CVR.isSetVariable() ) if (self.CVR.getVariable() != None): diff --git a/src/bindings/python/test/sbml/TestCompartment_newSetters.py b/src/bindings/python/test/sbml/TestCompartment_newSetters.py index 06602605f2..f047de1dea 100644 --- a/src/bindings/python/test/sbml/TestCompartment_newSetters.py +++ b/src/bindings/python/test/sbml/TestCompartment_newSetters.py @@ -51,20 +51,20 @@ def tearDown(self): def test_Compartment_setCompartmentType1(self): i = self.C.setCompartmentType( "cell") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.C.isSetCompartmentType() ) i = self.C.unsetCompartmentType() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.C.isSetCompartmentType() ) pass def test_Compartment_setCompartmentType2(self): c = libsbml.Compartment(2,2) i = c.setCompartmentType( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetCompartmentType() ) i = c.unsetCompartmentType() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetCompartmentType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -72,11 +72,11 @@ def test_Compartment_setCompartmentType2(self): def test_Compartment_setCompartmentType3(self): c = libsbml.Compartment(2,2) i = c.setCompartmentType( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetCompartmentType() ) - self.assert_(( "cell" == c.getCompartmentType() )) + self.assertTrue(( "cell" == c.getCompartmentType() )) i = c.unsetCompartmentType() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetCompartmentType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -84,29 +84,29 @@ def test_Compartment_setCompartmentType3(self): def test_Compartment_setCompartmentType4(self): c = libsbml.Compartment(2,2) i = c.setCompartmentType("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetCompartmentType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setConstant1(self): i = self.C.setConstant(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.C.getConstant() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.C.getConstant() == False ) pass def test_Compartment_setConstant2(self): c = libsbml.Compartment(2,2) i = c.setConstant(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getConstant() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getConstant() == False ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setId2(self): c = libsbml.Compartment(2,2) i = c.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetId() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -114,171 +114,171 @@ def test_Compartment_setId2(self): def test_Compartment_setId3(self): c = libsbml.Compartment(2,2) i = c.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetId() ) - self.assert_(( "cell" == c.getId() )) + self.assertTrue(( "cell" == c.getId() )) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setId4(self): c = libsbml.Compartment(2,2) i = c.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetId() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setName1(self): i = self.C.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetName() ) i = self.C.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_Compartment_setName2(self): c = libsbml.Compartment(1,2) i = c.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetName() ) i = c.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetName() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setName3(self): i = self.C.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_Compartment_setOutside1(self): i = self.C.setOutside( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.C.isSetOutside() ) i = self.C.unsetOutside() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetOutside() ) pass def test_Compartment_setOutside2(self): i = self.C.setOutside( "litre") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetOutside() ) i = self.C.unsetOutside() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetOutside() ) pass def test_Compartment_setOutside3(self): i = self.C.setOutside("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetOutside() ) pass def test_Compartment_setSize1(self): i = self.C.setSize(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getSize() == 2.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getSize() == 2.0 ) i = self.C.unsetSize() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) pass def test_Compartment_setSize2(self): c = libsbml.Compartment(2,2) i = c.setSize(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getSize() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getSize() == 4 ) self.assertEqual( True, c.isSetSize() ) i = c.unsetSize() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSize() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setSpatialDimensions1(self): i = self.C.setSpatialDimensions(2) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.C.getSpatialDimensions() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.C.getSpatialDimensions() == 3 ) pass def test_Compartment_setSpatialDimensions2(self): c = libsbml.Compartment(2,2) i = c.setSpatialDimensions(4) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( c.getSpatialDimensions() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( c.getSpatialDimensions() == 3 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setSpatialDimensions3(self): c = libsbml.Compartment(2,2) i = c.setSpatialDimensions(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getSpatialDimensions() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getSpatialDimensions() == 2 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setSpatialDimensions4(self): c = libsbml.Compartment(2,2) i = c.setSpatialDimensions(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getSpatialDimensions() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getSpatialDimensions() == 2 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setSpatialDimensions5(self): c = libsbml.Compartment(2,2) i = c.setSpatialDimensions(2.2) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( c.getSpatialDimensions() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( c.getSpatialDimensions() == 3 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Compartment_setUnits1(self): i = self.C.setUnits( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.C.isSetUnits() ) i = self.C.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass def test_Compartment_setUnits2(self): i = self.C.setUnits( "litre") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetUnits() ) i = self.C.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass def test_Compartment_setUnits3(self): i = self.C.setUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass def test_Compartment_setVolume1(self): i = self.C.setVolume(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getVolume() == 2.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getVolume() == 2.0 ) self.assertEqual( True, self.C.isSetVolume() ) i = self.C.unsetVolume() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getVolume() == 1.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getVolume() == 1.0 ) self.assertEqual( True, self.C.isSetVolume() ) pass def test_Compartment_setVolume2(self): c = libsbml.Compartment(2,2) i = c.setVolume(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getVolume() == 4.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getVolume() == 4.0 ) self.assertEqual( True, c.isSetVolume() ) i = c.unsetVolume() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetVolume() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestConsistencyChecks.py b/src/bindings/python/test/sbml/TestConsistencyChecks.py index d443cc3ad6..d8f5aed39d 100644 --- a/src/bindings/python/test/sbml/TestConsistencyChecks.py +++ b/src/bindings/python/test/sbml/TestConsistencyChecks.py @@ -45,36 +45,36 @@ def test_consistency_checks(self): if (d == None): pass errors = d.checkConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10301 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10301 ) d.getErrorLog().clearLog() d.setConsistencyChecks(libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY,False) errors = d.checkConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 10214 ) - self.assert_( d.getError(1).getErrorId() == 20612 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 10214 ) + self.assertTrue( d.getError(1).getErrorId() == 20612 ) d.getErrorLog().clearLog() d.setConsistencyChecks(libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY,False) errors = d.checkConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10701 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10701 ) d.getErrorLog().clearLog() d.setConsistencyChecks(libsbml.LIBSBML_CAT_SBO_CONSISTENCY,False) errors = d.checkConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10214 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10214 ) d.getErrorLog().clearLog() d.setConsistencyChecks(libsbml.LIBSBML_CAT_MATHML_CONSISTENCY,False) errors = d.checkConsistency() - self.assert_( errors == 4 ) - self.assert_( d.getError(0).getErrorId() == 99505 ) - self.assert_( d.getError(1).getErrorId() == 99505 ) - self.assert_( d.getError(2).getErrorId() == 99505 ) - self.assert_( d.getError(3).getErrorId() == 80701 ) + self.assertTrue( errors == 4 ) + self.assertTrue( d.getError(0).getErrorId() == 99505 ) + self.assertTrue( d.getError(1).getErrorId() == 99505 ) + self.assertTrue( d.getError(2).getErrorId() == 99505 ) + self.assertTrue( d.getError(3).getErrorId() == 80701 ) d.getErrorLog().clearLog() d.setConsistencyChecks(libsbml.LIBSBML_CAT_UNITS_CONSISTENCY,False) errors = d.checkConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass diff --git a/src/bindings/python/test/sbml/TestConstraint.py b/src/bindings/python/test/sbml/TestConstraint.py index 6a885e8c5f..5bb6793dfe 100644 --- a/src/bindings/python/test/sbml/TestConstraint.py +++ b/src/bindings/python/test/sbml/TestConstraint.py @@ -50,10 +50,10 @@ def tearDown(self): pass def test_Constraint_create(self): - self.assert_( self.C.getTypeCode() == libsbml.SBML_CONSTRAINT ) - self.assert_( self.C.getMetaId() == "" ) - self.assert_( self.C.getNotes() == None ) - self.assert_( self.C.getAnnotation() == None ) + self.assertTrue( self.C.getTypeCode() == libsbml.SBML_CONSTRAINT ) + self.assertTrue( self.C.getMetaId() == "" ) + self.assertTrue( self.C.getNotes() == None ) + self.assertTrue( self.C.getAnnotation() == None ) self.assertEqual( False, self.C.isSetMessage() ) self.assertEqual( False, self.C.isSetMath() ) pass @@ -64,14 +64,14 @@ def test_Constraint_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,2) sbmlns.addNamespaces(xmlns) object = libsbml.Constraint(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_CONSTRAINT ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 2 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_CONSTRAINT ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 2 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -82,10 +82,10 @@ def test_Constraint_free_NULL(self): def test_Constraint_setMath(self): math = libsbml.parseFormula("2 * k") self.C.setMath(math) - self.assert_( self.C.getMath() != math ) + self.assertTrue( self.C.getMath() != math ) self.assertEqual( True, self.C.isSetMath() ) self.C.setMath(self.C.getMath()) - self.assert_( self.C.getMath() != math ) + self.assertTrue( self.C.getMath() != math ) self.C.setMath(None) self.assertEqual( False, self.C.isSetMath() ) if (self.C.getMath() != None): @@ -106,11 +106,11 @@ def test_Constraint_setMessage(self): node = libsbml.XMLNode(triple1,att1) node.addChild(p) self.C.setMessage(node) - self.assert_( self.C.getMessage() != node ) - self.assert_( self.C.isSetMessage() == True ) + self.assertTrue( self.C.getMessage() != node ) + self.assertTrue( self.C.isSetMessage() == True ) self.C.setMessage(self.C.getMessage()) - self.assert_( self.C.getMessage() != node ) - self.assert_( self.C.getMessageString() != None ) + self.assertTrue( self.C.getMessage() != node ) + self.assertTrue( self.C.getMessageString() != None ) self.C.unsetMessage() self.assertEqual( False, self.C.isSetMessage() ) if (self.C.getMessage() != None): diff --git a/src/bindings/python/test/sbml/TestConstraint_newSetters.py b/src/bindings/python/test/sbml/TestConstraint_newSetters.py index 104e9028d3..8f2a2734e7 100644 --- a/src/bindings/python/test/sbml/TestConstraint_newSetters.py +++ b/src/bindings/python/test/sbml/TestConstraint_newSetters.py @@ -52,12 +52,12 @@ def tearDown(self): def test_Constraint_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.C.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getMath() != math ) self.assertEqual( True, self.C.isSetMath() ) i = self.C.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getMath() == None ) self.assertEqual( False, self.C.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -65,7 +65,7 @@ def test_Constraint_setMath1(self): def test_Constraint_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.C.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.C.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -73,10 +73,10 @@ def test_Constraint_setMath2(self): def test_Constraint_setMessage1(self): node = libsbml.XMLNode() i = self.C.setMessage(node) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( self.C.isSetMessage() == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( self.C.isSetMessage() == False ) i = self.C.unsetMessage() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetMessage() ) if (self.C.getMessage() != None): pass @@ -96,10 +96,10 @@ def test_Constraint_setMessage2(self): node = libsbml.XMLNode(triple1,att1) node.addChild(p) i = self.C.setMessage(node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.isSetMessage() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.isSetMessage() == True ) i = self.C.unsetMessage() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetMessage() ) if (self.C.getMessage() != None): pass diff --git a/src/bindings/python/test/sbml/TestCopyAndClone.py b/src/bindings/python/test/sbml/TestCopyAndClone.py index b4a2b037ee..9a547b52d2 100644 --- a/src/bindings/python/test/sbml/TestCopyAndClone.py +++ b/src/bindings/python/test/sbml/TestCopyAndClone.py @@ -40,11 +40,11 @@ class TestCopyAndClone(unittest.TestCase): def test_CompartmentType_assignmentOperator(self): o1 = libsbml.CompartmentType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.CompartmentType(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -52,10 +52,10 @@ def test_CompartmentType_assignmentOperator(self): def test_CompartmentType_clone(self): o1 = libsbml.CompartmentType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -63,10 +63,10 @@ def test_CompartmentType_clone(self): def test_CompartmentType_copyConstructor(self): o1 = libsbml.CompartmentType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.CompartmentType(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -75,13 +75,13 @@ def test_Compartment_assignmentOperator(self): o1 = libsbml.Compartment(2,4) o1.setId("c") o1.setOutside("c2") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getOutside() == "c2" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getOutside() == "c2" ) o2 = libsbml.Compartment(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getOutside() == "c2" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getOutside() == "c2" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -90,12 +90,12 @@ def test_Compartment_clone(self): o1 = libsbml.Compartment(2,4) o1.setId("c") o1.setOutside("c2") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getOutside() == "c2" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getOutside() == "c2" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getOutside() == "c2" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getOutside() == "c2" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -104,12 +104,12 @@ def test_Compartment_copyConstructor(self): o1 = libsbml.Compartment(2,4) o1.setId("c") o1.setOutside("c2") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getOutside() == "c2" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getOutside() == "c2" ) o2 = libsbml.Compartment(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getOutside() == "c2" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getOutside() == "c2" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -117,7 +117,7 @@ def test_Compartment_copyConstructor(self): def test_Constraint_assignmentOperator(self): o1 = libsbml.Constraint(2,4) o1.setMetaId("c") - self.assert_( o1.getMetaId() == "c" ) + self.assertTrue( o1.getMetaId() == "c" ) text = libsbml.XMLNode.convertStringToXMLNode(" Some text ") triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() @@ -134,16 +134,16 @@ def test_Constraint_assignmentOperator(self): o1.setMessage(message) math = None message = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) msg = o1.getMessage() - self.assert_( msg != None ) + self.assertTrue( msg != None ) o2 = libsbml.Constraint(2,4) o2 = o1 - self.assert_( o2.getMetaId() == "c" ) - self.assert_( o2.getMath() != None ) + self.assertTrue( o2.getMetaId() == "c" ) + self.assertTrue( o2.getMath() != None ) msg = o2.getMessage() - self.assert_( msg != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( msg != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -151,7 +151,7 @@ def test_Constraint_assignmentOperator(self): def test_Constraint_clone(self): o1 = libsbml.Constraint(2,4) o1.setMetaId("c") - self.assert_( o1.getMetaId() == "c" ) + self.assertTrue( o1.getMetaId() == "c" ) text = libsbml.XMLNode.convertStringToXMLNode(" Some text ") triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() @@ -168,15 +168,15 @@ def test_Constraint_clone(self): o1.setMessage(message) math = None message = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) msg = o1.getMessage() - self.assert_( msg != None ) + self.assertTrue( msg != None ) o2 = o1.clone() - self.assert_( o2.getMetaId() == "c" ) - self.assert_( o2.getMath() != None ) + self.assertTrue( o2.getMetaId() == "c" ) + self.assertTrue( o2.getMath() != None ) msg = o2.getMessage() - self.assert_( msg != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( msg != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -184,7 +184,7 @@ def test_Constraint_clone(self): def test_Constraint_copyConstructor(self): o1 = libsbml.Constraint(2,4) o1.setMetaId("c") - self.assert_( o1.getMetaId() == "c" ) + self.assertTrue( o1.getMetaId() == "c" ) text = libsbml.XMLNode.convertStringToXMLNode(" Some text ") triple = libsbml.XMLTriple("p", "http://www.w3.org/1999/xhtml", "") att = libsbml.XMLAttributes() @@ -201,15 +201,15 @@ def test_Constraint_copyConstructor(self): o1.setMessage(message) math = None message = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) msg = o1.getMessage() - self.assert_( msg != None ) + self.assertTrue( msg != None ) o2 = libsbml.Constraint(o1) - self.assert_( o2.getMetaId() == "c" ) - self.assert_( o2.getMath() != None ) + self.assertTrue( o2.getMetaId() == "c" ) + self.assertTrue( o2.getMath() != None ) msg = o2.getMessage() - self.assert_( msg != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( msg != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -219,11 +219,11 @@ def test_Delay_assignmentOperator(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.Delay(2,4) o2 = o1 - self.assert_( o1.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o1.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -233,10 +233,10 @@ def test_Delay_clone(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = o1.clone() - self.assert_( o1.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o1.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -246,10 +246,10 @@ def test_Delay_copyConstructor(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.Delay(o1) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -257,16 +257,16 @@ def test_Delay_copyConstructor(self): def test_EventAssignment_assignmentOperator(self): o1 = libsbml.EventAssignment(2,4) o1.setVariable("c2") - self.assert_( o1.getVariable() == "c2" ) + self.assertTrue( o1.getVariable() == "c2" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.EventAssignment(2,4) o2 = o1 - self.assert_( o2.getVariable() == "c2" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "c2" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -274,15 +274,15 @@ def test_EventAssignment_assignmentOperator(self): def test_EventAssignment_clone(self): o1 = libsbml.EventAssignment(2,4) o1.setVariable("c2") - self.assert_( o1.getVariable() == "c2" ) + self.assertTrue( o1.getVariable() == "c2" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = o1.clone() - self.assert_( o2.getVariable() == "c2" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "c2" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -290,15 +290,15 @@ def test_EventAssignment_clone(self): def test_EventAssignment_copyConstructor(self): o1 = libsbml.EventAssignment(2,4) o1.setVariable("c2") - self.assert_( o1.getVariable() == "c2" ) + self.assertTrue( o1.getVariable() == "c2" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.EventAssignment(o1) - self.assert_( o2.getVariable() == "c2" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "c2" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -306,11 +306,11 @@ def test_EventAssignment_copyConstructor(self): def test_Event_assignmentOperator(self): o1 = libsbml.Event(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.Event(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -318,10 +318,10 @@ def test_Event_assignmentOperator(self): def test_Event_clone(self): o1 = libsbml.Event(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -329,10 +329,10 @@ def test_Event_clone(self): def test_Event_copyConstructor(self): o1 = libsbml.Event(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.Event(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -340,16 +340,16 @@ def test_Event_copyConstructor(self): def test_FunctionDefinition_assignmentOperator(self): o1 = libsbml.FunctionDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.FunctionDefinition(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -357,15 +357,15 @@ def test_FunctionDefinition_assignmentOperator(self): def test_FunctionDefinition_clone(self): o1 = libsbml.FunctionDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -373,15 +373,15 @@ def test_FunctionDefinition_clone(self): def test_FunctionDefinition_copyConstructor(self): o1 = libsbml.FunctionDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.FunctionDefinition(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -389,11 +389,11 @@ def test_FunctionDefinition_copyConstructor(self): def test_InitialAssignment_assignmentOperator(self): o1 = libsbml.InitialAssignment(2,4) o1.setSymbol("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.InitialAssignment(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -401,10 +401,10 @@ def test_InitialAssignment_assignmentOperator(self): def test_InitialAssignment_clone(self): o1 = libsbml.InitialAssignment(2,4) o1.setSymbol("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -412,10 +412,10 @@ def test_InitialAssignment_clone(self): def test_InitialAssignment_copyConstructor(self): o1 = libsbml.InitialAssignment(2,4) o1.setSymbol("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.InitialAssignment(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -426,13 +426,13 @@ def test_KineticLaw_assignmentOperator(self): p.setId("jake") o1.addParameter(p) p = None - self.assert_( o1.getNumParameters() == 1 ) - self.assert_( o1.getParameter(0).getId() == "jake" ) + self.assertTrue( o1.getNumParameters() == 1 ) + self.assertTrue( o1.getParameter(0).getId() == "jake" ) o2 = libsbml.KineticLaw(2,4) o2 = o1 - self.assert_( o2.getNumParameters() == 1 ) - self.assert_( o2.getParameter(0).getId() == "jake" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getNumParameters() == 1 ) + self.assertTrue( o2.getParameter(0).getId() == "jake" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -443,12 +443,12 @@ def test_KineticLaw_clone(self): p.setId("jake") o1.addParameter(p) p = None - self.assert_( o1.getNumParameters() == 1 ) - self.assert_( o1.getParameter(0).getId() == "jake" ) + self.assertTrue( o1.getNumParameters() == 1 ) + self.assertTrue( o1.getParameter(0).getId() == "jake" ) o2 = o1.clone() - self.assert_( o2.getNumParameters() == 1 ) - self.assert_( o2.getParameter(0).getId() == "jake" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getNumParameters() == 1 ) + self.assertTrue( o2.getParameter(0).getId() == "jake" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -459,12 +459,12 @@ def test_KineticLaw_copyConstructor(self): p.setId("jake") o1.addParameter(p) p = None - self.assert_( o1.getNumParameters() == 1 ) - self.assert_( o1.getParameter(0).getId() == "jake" ) + self.assertTrue( o1.getNumParameters() == 1 ) + self.assertTrue( o1.getParameter(0).getId() == "jake" ) o2 = libsbml.KineticLaw(o1) - self.assert_( o2.getNumParameters() == 1 ) - self.assert_( o2.getParameter(0).getId() == "jake" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getNumParameters() == 1 ) + self.assertTrue( o2.getParameter(0).getId() == "jake" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -477,9 +477,9 @@ def test_ListOf_assignmentOperator(self): s = None o2 = libsbml.ListOf(2,1) o2 = o1 - self.assert_( o2.size() == 1 ) - self.assert_( o2.get(0).getId() == "species_1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.size() == 1 ) + self.assertTrue( o2.get(0).getId() == "species_1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -491,9 +491,9 @@ def test_ListOf_clone(self): o1.append(s) s = None o2 = o1.clone() - self.assert_( o2.size() == 1 ) - self.assert_( o2.get(0).getId() == "species_1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.size() == 1 ) + self.assertTrue( o2.get(0).getId() == "species_1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -505,9 +505,9 @@ def test_ListOf_copyConstructor(self): o1.append(s) s = None o2 = libsbml.ListOf(o1) - self.assert_( o2.size() == 1 ) - self.assert_( o2.get(0).getId() == "species_1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.size() == 1 ) + self.assertTrue( o2.get(0).getId() == "species_1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -515,11 +515,11 @@ def test_ListOf_copyConstructor(self): def test_Parameter_assignmentOperator(self): o1 = libsbml.Parameter(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.Parameter(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -527,10 +527,10 @@ def test_Parameter_assignmentOperator(self): def test_Parameter_clone(self): o1 = libsbml.Parameter(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -538,10 +538,10 @@ def test_Parameter_clone(self): def test_Parameter_copyConstructor(self): o1 = libsbml.Parameter(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.Parameter(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -549,19 +549,19 @@ def test_Parameter_copyConstructor(self): def test_Reaction_assignmentOperator(self): o1 = libsbml.Reaction(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) kl = libsbml.KineticLaw(2,4) kl.setMath(libsbml.parseFormula("1")) o1.setKineticLaw(kl) kl = None - self.assert_( o1.isSetKineticLaw() == True ) - self.assert_( o1.getKineticLaw() != None ) + self.assertTrue( o1.isSetKineticLaw() == True ) + self.assertTrue( o1.getKineticLaw() != None ) o2 = libsbml.Reaction(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.isSetKineticLaw() == True ) - self.assert_( o2.getKineticLaw() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.isSetKineticLaw() == True ) + self.assertTrue( o2.getKineticLaw() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -569,18 +569,18 @@ def test_Reaction_assignmentOperator(self): def test_Reaction_clone(self): o1 = libsbml.Reaction(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) kl = libsbml.KineticLaw(2,4) kl.setMath(libsbml.parseFormula("1")) o1.setKineticLaw(kl) kl = None - self.assert_( o1.isSetKineticLaw() == True ) - self.assert_( o1.getKineticLaw() != None ) + self.assertTrue( o1.isSetKineticLaw() == True ) + self.assertTrue( o1.getKineticLaw() != None ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.isSetKineticLaw() == True ) - self.assert_( o2.getKineticLaw() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.isSetKineticLaw() == True ) + self.assertTrue( o2.getKineticLaw() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -588,18 +588,18 @@ def test_Reaction_clone(self): def test_Reaction_copyConstructor(self): o1 = libsbml.Reaction(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) kl = libsbml.KineticLaw(2,4) kl.setMath(libsbml.parseFormula("1")) o1.setKineticLaw(kl) kl = None - self.assert_( o1.isSetKineticLaw() == True ) - self.assert_( o1.getKineticLaw() != None ) + self.assertTrue( o1.isSetKineticLaw() == True ) + self.assertTrue( o1.getKineticLaw() != None ) o2 = libsbml.Reaction(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.isSetKineticLaw() == True ) - self.assert_( o2.getKineticLaw() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.isSetKineticLaw() == True ) + self.assertTrue( o2.getKineticLaw() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -607,16 +607,16 @@ def test_Reaction_copyConstructor(self): def test_Rule_assignmentOperator(self): o1 = libsbml.RateRule(2,4) o1.setVariable("a") - self.assert_( o1.getVariable() == "a" ) + self.assertTrue( o1.getVariable() == "a" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.isSetMath() == True ) + self.assertTrue( o1.isSetMath() == True ) o2 = libsbml.RateRule(2,4) o2 = o1 - self.assert_( o2.getVariable() == "a" ) - self.assert_( o2.isSetMath() == True ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "a" ) + self.assertTrue( o2.isSetMath() == True ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -624,15 +624,15 @@ def test_Rule_assignmentOperator(self): def test_Rule_clone(self): o1 = libsbml.RateRule(2,1) o1.setVariable("a") - self.assert_( o1.getVariable() == "a" ) + self.assertTrue( o1.getVariable() == "a" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.isSetMath() == True ) + self.assertTrue( o1.isSetMath() == True ) o2 = o1.clone() - self.assert_( o2.getVariable() == "a" ) - self.assert_( o2.isSetMath() == True ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "a" ) + self.assertTrue( o2.isSetMath() == True ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -640,15 +640,15 @@ def test_Rule_clone(self): def test_Rule_copyConstructor(self): o1 = libsbml.RateRule(2,1) o1.setVariable("a") - self.assert_( o1.getVariable() == "a" ) + self.assertTrue( o1.getVariable() == "a" ) node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.isSetMath() == True ) + self.assertTrue( o1.isSetMath() == True ) o2 = libsbml.Rule(o1) - self.assert_( o2.getVariable() == "a" ) - self.assert_( o2.isSetMath() == True ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getVariable() == "a" ) + self.assertTrue( o2.isSetMath() == True ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -656,12 +656,12 @@ def test_Rule_copyConstructor(self): def test_SBMLDocument_assignmentOperator(self): o1 = libsbml.SBMLDocument() o1.setLevelAndVersion(2,1,False) - self.assert_( o1.getLevel() == 2 ) - self.assert_( o1.getVersion() == 1 ) + self.assertTrue( o1.getLevel() == 2 ) + self.assertTrue( o1.getVersion() == 1 ) o2 = libsbml.SBMLDocument() o2 = o1 - self.assert_( o2.getLevel() == 2 ) - self.assert_( o2.getVersion() == 1 ) + self.assertTrue( o2.getLevel() == 2 ) + self.assertTrue( o2.getVersion() == 1 ) o2 = None o1 = None pass @@ -675,19 +675,19 @@ def test_SBMLDocument_clone(self): m.createReaction() m.setId("foo") o1.setModel(m) - self.assert_( o1.getLevel() == 1 ) - self.assert_( o1.getVersion() == 1 ) - self.assert_( o1.getModel().getId() == "foo" ) - self.assert_( o1.getModel().getLevel() == 1 ) - self.assert_( o1.getModel().getVersion() == 1 ) - self.assert_( o1.getModel().getSBMLDocument() == o1 ) + self.assertTrue( o1.getLevel() == 1 ) + self.assertTrue( o1.getVersion() == 1 ) + self.assertTrue( o1.getModel().getId() == "foo" ) + self.assertTrue( o1.getModel().getLevel() == 1 ) + self.assertTrue( o1.getModel().getVersion() == 1 ) + self.assertTrue( o1.getModel().getSBMLDocument() == o1 ) o2 = o1.clone() - self.assert_( o2.getLevel() == 1 ) - self.assert_( o2.getVersion() == 1 ) - self.assert_( o2.getModel().getId() == "foo" ) - self.assert_( o2.getModel().getLevel() == 1 ) - self.assert_( o2.getModel().getVersion() == 1 ) - self.assert_( o2.getModel().getSBMLDocument() == o2 ) + self.assertTrue( o2.getLevel() == 1 ) + self.assertTrue( o2.getVersion() == 1 ) + self.assertTrue( o2.getModel().getId() == "foo" ) + self.assertTrue( o2.getModel().getLevel() == 1 ) + self.assertTrue( o2.getModel().getVersion() == 1 ) + self.assertTrue( o2.getModel().getSBMLDocument() == o2 ) o2 = None o1 = None pass @@ -695,11 +695,11 @@ def test_SBMLDocument_clone(self): def test_SBMLDocument_copyConstructor(self): o1 = libsbml.SBMLDocument() o1.setLevelAndVersion(2,1,False) - self.assert_( o1.getLevel() == 2 ) - self.assert_( o1.getVersion() == 1 ) + self.assertTrue( o1.getLevel() == 2 ) + self.assertTrue( o1.getVersion() == 1 ) o2 = libsbml.SBMLDocument(o1) - self.assert_( o2.getLevel() == 2 ) - self.assert_( o2.getVersion() == 1 ) + self.assertTrue( o2.getLevel() == 2 ) + self.assertTrue( o2.getVersion() == 1 ) o2 = None o1 = None pass @@ -707,11 +707,11 @@ def test_SBMLDocument_copyConstructor(self): def test_SpeciesReference_assignmentOperator(self): o1 = libsbml.SpeciesReference(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.SpeciesReference(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -719,10 +719,10 @@ def test_SpeciesReference_assignmentOperator(self): def test_SpeciesReference_clone(self): o1 = libsbml.SpeciesReference(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -730,10 +730,10 @@ def test_SpeciesReference_clone(self): def test_SpeciesReference_copyConstructor(self): o1 = libsbml.SpeciesReference(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.SpeciesReference(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -741,11 +741,11 @@ def test_SpeciesReference_copyConstructor(self): def test_SpeciesType_assignmentOperator(self): o1 = libsbml.SpeciesType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.SpeciesType(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -753,10 +753,10 @@ def test_SpeciesType_assignmentOperator(self): def test_SpeciesType_clone(self): o1 = libsbml.SpeciesType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -764,10 +764,10 @@ def test_SpeciesType_clone(self): def test_SpeciesType_copyConstructor(self): o1 = libsbml.SpeciesType(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.SpeciesType(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -776,13 +776,13 @@ def test_Species_assignmentOperator(self): o1 = libsbml.Species(2,4) o1.setId("c") o1.setSpeciesType("c1") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getSpeciesType() == "c1" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getSpeciesType() == "c1" ) o2 = libsbml.Species(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getSpeciesType() == "c1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getSpeciesType() == "c1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -791,12 +791,12 @@ def test_Species_clone(self): o1 = libsbml.Species(2,4) o1.setId("c") o1.setSpeciesType("c1") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getSpeciesType() == "c1" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getSpeciesType() == "c1" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getSpeciesType() == "c1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getSpeciesType() == "c1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -805,12 +805,12 @@ def test_Species_copyConstructor(self): o1 = libsbml.Species(2,4) o1.setId("c") o1.setSpeciesType("c1") - self.assert_( o1.getId() == "c" ) - self.assert_( o1.getSpeciesType() == "c1" ) + self.assertTrue( o1.getId() == "c" ) + self.assertTrue( o1.getSpeciesType() == "c1" ) o2 = libsbml.Species(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getSpeciesType() == "c1" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getSpeciesType() == "c1" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -820,11 +820,11 @@ def test_Trigger_assignmentOperator(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.Trigger(2,4) o2 = o1 - self.assert_( o1.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o1.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -834,10 +834,10 @@ def test_Trigger_clone(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = o1.clone() - self.assert_( o1.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o1.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -847,10 +847,10 @@ def test_Trigger_copyConstructor(self): node = libsbml.ASTNode(libsbml.AST_CONSTANT_PI) o1.setMath(node) node = None - self.assert_( o1.getMath() != None ) + self.assertTrue( o1.getMath() != None ) o2 = libsbml.Trigger(o1) - self.assert_( o2.getMath() != None ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getMath() != None ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -858,11 +858,11 @@ def test_Trigger_copyConstructor(self): def test_UnitDefinition_assignmentOperator(self): o1 = libsbml.UnitDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.UnitDefinition(2,4) o2 = o1 - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -870,10 +870,10 @@ def test_UnitDefinition_assignmentOperator(self): def test_UnitDefinition_clone(self): o1 = libsbml.UnitDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = o1.clone() - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -881,10 +881,10 @@ def test_UnitDefinition_clone(self): def test_UnitDefinition_copyConstructor(self): o1 = libsbml.UnitDefinition(2,4) o1.setId("c") - self.assert_( o1.getId() == "c" ) + self.assertTrue( o1.getId() == "c" ) o2 = libsbml.UnitDefinition(o1) - self.assert_( o2.getId() == "c" ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getId() == "c" ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -892,11 +892,11 @@ def test_UnitDefinition_copyConstructor(self): def test_Unit_assignmentOperator(self): o1 = libsbml.Unit(2,4) o1.setKind(libsbml.UNIT_KIND_MOLE) - self.assert_( o1.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o1.getKind() == libsbml.UNIT_KIND_MOLE ) o2 = libsbml.Unit(2,4) o2 = o1 - self.assert_( o2.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -904,10 +904,10 @@ def test_Unit_assignmentOperator(self): def test_Unit_clone(self): o1 = libsbml.Unit(2,4) o1.setKind(libsbml.UNIT_KIND_MOLE) - self.assert_( o1.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o1.getKind() == libsbml.UNIT_KIND_MOLE ) o2 = o1.clone() - self.assert_( o2.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass @@ -915,10 +915,10 @@ def test_Unit_clone(self): def test_Unit_copyConstructor(self): o1 = libsbml.Unit(2,4) o1.setKind(libsbml.UNIT_KIND_MOLE) - self.assert_( o1.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o1.getKind() == libsbml.UNIT_KIND_MOLE ) o2 = libsbml.Unit(o1) - self.assert_( o2.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) + self.assertTrue( o2.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass diff --git a/src/bindings/python/test/sbml/TestDelay.py b/src/bindings/python/test/sbml/TestDelay.py index 8d5e2e2a24..001f1e8e39 100644 --- a/src/bindings/python/test/sbml/TestDelay.py +++ b/src/bindings/python/test/sbml/TestDelay.py @@ -50,11 +50,11 @@ def tearDown(self): pass def test_Delay_create(self): - self.assert_( self.D.getTypeCode() == libsbml.SBML_DELAY ) - self.assert_( self.D.getMetaId() == "" ) - self.assert_( self.D.getNotes() == None ) - self.assert_( self.D.getAnnotation() == None ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( self.D.getTypeCode() == libsbml.SBML_DELAY ) + self.assertTrue( self.D.getMetaId() == "" ) + self.assertTrue( self.D.getNotes() == None ) + self.assertTrue( self.D.getAnnotation() == None ) + self.assertTrue( self.D.getMath() == None ) pass def test_Delay_createWithNS(self): @@ -63,14 +63,14 @@ def test_Delay_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Delay(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_DELAY ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_DELAY ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -82,18 +82,18 @@ def test_Delay_setMath(self): math = libsbml.parseFormula("lambda(x, x^3)") self.D.setMath(math) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.D.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) self.D.setMath(self.D.getMath()) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) self.D.setMath(None) self.assertEqual( False, self.D.isSetMath() ) if (self.D.getMath() != None): @@ -103,12 +103,12 @@ def test_Delay_setMath(self): def test_Delay_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) i = self.D.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() == None ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -116,7 +116,7 @@ def test_Delay_setMath1(self): def test_Delay_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestEvent.py b/src/bindings/python/test/sbml/TestEvent.py index 6cfa18616c..69da686109 100644 --- a/src/bindings/python/test/sbml/TestEvent.py +++ b/src/bindings/python/test/sbml/TestEvent.py @@ -50,20 +50,20 @@ def tearDown(self): pass def test_Event_create(self): - self.assert_( self.E.getTypeCode() == libsbml.SBML_EVENT ) - self.assert_( self.E.getMetaId() == "" ) - self.assert_( self.E.getNotes() == None ) - self.assert_( self.E.getAnnotation() == None ) - self.assert_( self.E.getId() == "" ) - self.assert_( self.E.getName() == "" ) - self.assert_( self.E.getTrigger() == None ) - self.assert_( self.E.getDelay() == None ) - self.assert_( self.E.getTimeUnits() == "" ) + self.assertTrue( self.E.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( self.E.getMetaId() == "" ) + self.assertTrue( self.E.getNotes() == None ) + self.assertTrue( self.E.getAnnotation() == None ) + self.assertTrue( self.E.getId() == "" ) + self.assertTrue( self.E.getName() == "" ) + self.assertTrue( self.E.getTrigger() == None ) + self.assertTrue( self.E.getDelay() == None ) + self.assertTrue( self.E.getTimeUnits() == "" ) self.assertEqual( False, self.E.isSetId() ) self.assertEqual( False, self.E.isSetTrigger() ) self.assertEqual( False, self.E.isSetDelay() ) self.assertEqual( True, self.E.isSetUseValuesFromTriggerTime() ) - self.assert_( self.E.getNumEventAssignments() == 0 ) + self.assertTrue( self.E.getNumEventAssignments() == 0 ) pass def test_Event_createWithNS(self): @@ -72,14 +72,14 @@ def test_Event_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,4) sbmlns.addNamespaces(xmlns) object = libsbml.Event(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_EVENT ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 4 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 4 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -100,8 +100,8 @@ def test_Event_full(self): e.setId( "e1") e.setName( "Set k2 to zero when P1 <= t") e.addEventAssignment(ea) - self.assert_( e.getNumEventAssignments() == 1 ) - self.assert_( e.getEventAssignment(0) != ea ) + self.assertTrue( e.getNumEventAssignments() == 1 ) + self.assertTrue( e.getEventAssignment(0) != ea ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -111,12 +111,12 @@ def test_Event_removeEventAssignment(self): o2 = self.E.createEventAssignment() o3 = self.E.createEventAssignment() o3.setVariable("test") - self.assert_( self.E.removeEventAssignment(0) == o1 ) - self.assert_( self.E.getNumEventAssignments() == 2 ) - self.assert_( self.E.removeEventAssignment(0) == o2 ) - self.assert_( self.E.getNumEventAssignments() == 1 ) - self.assert_( self.E.removeEventAssignment("test") == o3 ) - self.assert_( self.E.getNumEventAssignments() == 0 ) + self.assertTrue( self.E.removeEventAssignment(0) == o1 ) + self.assertTrue( self.E.getNumEventAssignments() == 2 ) + self.assertTrue( self.E.removeEventAssignment(0) == o2 ) + self.assertTrue( self.E.getNumEventAssignments() == 1 ) + self.assertTrue( self.E.removeEventAssignment("test") == o3 ) + self.assertTrue( self.E.getNumEventAssignments() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -127,12 +127,12 @@ def test_Event_setDelay(self): Delay = libsbml.Delay(2,4) Delay.setMath(math1) self.E.setDelay(Delay) - self.assert_( self.E.getDelay() != None ) + self.assertTrue( self.E.getDelay() != None ) self.assertEqual( True, self.E.isSetDelay() ) if (self.E.getDelay() == Delay): pass self.E.setDelay(self.E.getDelay()) - self.assert_( self.E.getDelay() != Delay ) + self.assertTrue( self.E.getDelay() != Delay ) self.E.setDelay(None) self.assertEqual( False, self.E.isSetDelay() ) if (self.E.getDelay() != None): @@ -142,12 +142,12 @@ def test_Event_setDelay(self): def test_Event_setId(self): id = "e1"; self.E.setId(id) - self.assert_(( id == self.E.getId() )) + self.assertTrue(( id == self.E.getId() )) self.assertEqual( True, self.E.isSetId() ) if (self.E.getId() == id): pass self.E.setId(self.E.getId()) - self.assert_(( id == self.E.getId() )) + self.assertTrue(( id == self.E.getId() )) self.E.setId("") self.assertEqual( False, self.E.isSetId() ) if (self.E.getId() != None): @@ -157,12 +157,12 @@ def test_Event_setId(self): def test_Event_setName(self): name = "Set_k2"; self.E.setName(name) - self.assert_(( name == self.E.getName() )) + self.assertTrue(( name == self.E.getName() )) self.assertEqual( True, self.E.isSetName() ) if (self.E.getName() == name): pass self.E.setName(self.E.getName()) - self.assert_(( name == self.E.getName() )) + self.assertTrue(( name == self.E.getName() )) self.E.setName("") self.assertEqual( False, self.E.isSetName() ) if (self.E.getName() != None): @@ -173,12 +173,12 @@ def test_Event_setTimeUnits(self): E1 = libsbml.Event(2,1) units = "second"; E1.setTimeUnits(units) - self.assert_(( units == E1.getTimeUnits() )) + self.assertTrue(( units == E1.getTimeUnits() )) self.assertEqual( True, E1.isSetTimeUnits() ) if (E1.getTimeUnits() == units): pass E1.setTimeUnits(E1.getTimeUnits()) - self.assert_(( units == E1.getTimeUnits() )) + self.assertTrue(( units == E1.getTimeUnits() )) E1.setTimeUnits("") self.assertEqual( False, E1.isSetTimeUnits() ) if (E1.getTimeUnits() != None): @@ -191,12 +191,12 @@ def test_Event_setTrigger(self): trigger = libsbml.Trigger(2,4) trigger.setMath(math1) self.E.setTrigger(trigger) - self.assert_( self.E.getTrigger() != None ) + self.assertTrue( self.E.getTrigger() != None ) self.assertEqual( True, self.E.isSetTrigger() ) if (self.E.getTrigger() == trigger): pass self.E.setTrigger(self.E.getTrigger()) - self.assert_( self.E.getTrigger() != trigger ) + self.assertTrue( self.E.getTrigger() != trigger ) self.E.setTrigger(None) self.assertEqual( False, self.E.isSetTrigger() ) if (self.E.getTrigger() != None): @@ -206,9 +206,9 @@ def test_Event_setTrigger(self): def test_Event_setUseValuesFromTriggerTime(self): object = libsbml.Event(2,4) object.setUseValuesFromTriggerTime(False) - self.assert_( object.getUseValuesFromTriggerTime() == False ) + self.assertTrue( object.getUseValuesFromTriggerTime() == False ) object.setUseValuesFromTriggerTime(True) - self.assert_( object.getUseValuesFromTriggerTime() == True ) + self.assertTrue( object.getUseValuesFromTriggerTime() == True ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestEventAssignment.py b/src/bindings/python/test/sbml/TestEventAssignment.py index dc5b329d17..3d0ef51ce0 100644 --- a/src/bindings/python/test/sbml/TestEventAssignment.py +++ b/src/bindings/python/test/sbml/TestEventAssignment.py @@ -50,12 +50,12 @@ def tearDown(self): pass def test_EventAssignment_create(self): - self.assert_( self.EA.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) - self.assert_( self.EA.getMetaId() == "" ) - self.assert_( self.EA.getNotes() == None ) - self.assert_( self.EA.getAnnotation() == None ) - self.assert_( self.EA.getVariable() == "" ) - self.assert_( self.EA.getMath() == None ) + self.assertTrue( self.EA.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) + self.assertTrue( self.EA.getMetaId() == "" ) + self.assertTrue( self.EA.getNotes() == None ) + self.assertTrue( self.EA.getAnnotation() == None ) + self.assertTrue( self.EA.getVariable() == "" ) + self.assertTrue( self.EA.getMath() == None ) pass def test_EventAssignment_createWithNS(self): @@ -64,14 +64,14 @@ def test_EventAssignment_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.EventAssignment(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -83,19 +83,19 @@ def test_EventAssignment_setMath(self): math = libsbml.parseFormula("2 * k") self.EA.setMath(math) math1 = self.EA.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "2 * k" == formula )) - self.assert_( self.EA.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "2 * k" == formula )) + self.assertTrue( self.EA.getMath() != math ) self.assertEqual( True, self.EA.isSetMath() ) self.EA.setMath(self.EA.getMath()) math1 = self.EA.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "2 * k" == formula )) - self.assert_( self.EA.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "2 * k" == formula )) + self.assertTrue( self.EA.getMath() != math ) self.EA.setMath(None) self.assertEqual( False, self.EA.isSetMath() ) if (self.EA.getMath() != None): @@ -106,12 +106,12 @@ def test_EventAssignment_setMath(self): def test_EventAssignment_setVariable(self): variable = "k2"; self.EA.setVariable(variable) - self.assert_(( variable == self.EA.getVariable() )) + self.assertTrue(( variable == self.EA.getVariable() )) self.assertEqual( True, self.EA.isSetVariable() ) if (self.EA.getVariable() == variable): pass self.EA.setVariable(self.EA.getVariable()) - self.assert_(( variable == self.EA.getVariable() )) + self.assertTrue(( variable == self.EA.getVariable() )) self.EA.setVariable("") self.assertEqual( False, self.EA.isSetVariable() ) if (self.EA.getVariable() != None): diff --git a/src/bindings/python/test/sbml/TestEventAssignment_newSetters.py b/src/bindings/python/test/sbml/TestEventAssignment_newSetters.py index fb75e36634..83a0de405d 100644 --- a/src/bindings/python/test/sbml/TestEventAssignment_newSetters.py +++ b/src/bindings/python/test/sbml/TestEventAssignment_newSetters.py @@ -52,12 +52,12 @@ def tearDown(self): def test_EventAssignment_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() != math ) self.assertEqual( True, self.E.isSetMath() ) i = self.E.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() == None ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -65,7 +65,7 @@ def test_EventAssignment_setMath1(self): def test_EventAssignment_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -73,18 +73,18 @@ def test_EventAssignment_setMath2(self): def test_EventAssignment_setVariable1(self): id = "1e1"; i = self.E.setVariable(id) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.E.isSetVariable() ) pass def test_EventAssignment_setVariable2(self): id = "e1"; i = self.E.setVariable(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.E.getVariable() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.E.getVariable() )) self.assertEqual( True, self.E.isSetVariable() ) i = self.E.setVariable("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetVariable() ) pass diff --git a/src/bindings/python/test/sbml/TestEvent_newSetters.py b/src/bindings/python/test/sbml/TestEvent_newSetters.py index af7f7a2121..2f11b834eb 100644 --- a/src/bindings/python/test/sbml/TestEvent_newSetters.py +++ b/src/bindings/python/test/sbml/TestEvent_newSetters.py @@ -53,14 +53,14 @@ def test_Event_addEventAssignment1(self): e = libsbml.Event(2,2) ea = libsbml.EventAssignment(2,2) i = e.addEventAssignment(ea) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ea.setVariable( "f") i = e.addEventAssignment(ea) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ea.setMath(libsbml.parseFormula("a-n")) i = e.addEventAssignment(ea) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( e.getNumEventAssignments() == 1 ) _dummyList = [ ea ]; _dummyList[:] = []; del _dummyList _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -71,8 +71,8 @@ def test_Event_addEventAssignment2(self): ea.setVariable( "f") ea.setMath(libsbml.parseFormula("a-n")) i = e.addEventAssignment(ea) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( e.getNumEventAssignments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( e.getNumEventAssignments() == 0 ) _dummyList = [ ea ]; _dummyList[:] = []; del _dummyList _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -80,8 +80,8 @@ def test_Event_addEventAssignment2(self): def test_Event_addEventAssignment3(self): e = libsbml.Event(2,2) i = e.addEventAssignment(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( e.getNumEventAssignments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( e.getNumEventAssignments() == 0 ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -94,11 +94,11 @@ def test_Event_addEventAssignment4(self): ea1.setVariable( "c") ea1.setMath(libsbml.parseFormula("a-n")) i = e.addEventAssignment(ea) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( e.getNumEventAssignments() == 1 ) i = e.addEventAssignment(ea1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( e.getNumEventAssignments() == 1 ) _dummyList = [ ea ]; _dummyList[:] = []; del _dummyList _dummyList = [ ea1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ e ]; _dummyList[:] = []; del _dummyList @@ -107,9 +107,9 @@ def test_Event_addEventAssignment4(self): def test_Event_createEventAssignment(self): e = libsbml.Event(2,2) ea = e.createEventAssignment() - self.assert_( e.getNumEventAssignments() == 1 ) - self.assert_( (ea).getLevel() == 2 ) - self.assert_( (ea).getVersion() == 2 ) + self.assertTrue( e.getNumEventAssignments() == 1 ) + self.assertTrue( (ea).getLevel() == 2 ) + self.assertTrue( (ea).getVersion() == 2 ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -118,11 +118,11 @@ def test_Event_setDelay1(self): Delay = libsbml.Delay(2,4) Delay.setMath(math1) i = self.E.setDelay(Delay) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getDelay() != None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getDelay() != None ) self.assertEqual( True, self.E.isSetDelay() ) i = self.E.unsetDelay() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetDelay() ) pass @@ -130,64 +130,64 @@ def test_Event_setDelay2(self): Delay = libsbml.Delay(2,1) Delay.setMath(libsbml.parseFormula("1")) i = self.E.setDelay(Delay) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) self.assertEqual( False, self.E.isSetDelay() ) i = self.E.unsetDelay() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) pass def test_Event_setId1(self): id = "1e1"; i = self.E.setId(id) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.E.isSetId() ) pass def test_Event_setId2(self): id = "e1"; i = self.E.setId(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.E.getId() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.E.getId() )) self.assertEqual( True, self.E.isSetId() ) i = self.E.unsetId() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetId() ) pass def test_Event_setId3(self): i = self.E.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetId() ) pass def test_Event_setName1(self): name = "3Set_k2"; i = self.E.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.E.isSetName() ) pass def test_Event_setName2(self): name = "Set k2"; i = self.E.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( name == self.E.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( name == self.E.getName() )) self.assertEqual( True, self.E.isSetName() ) i = self.E.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetName() ) pass def test_Event_setName3(self): i = self.E.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetName() ) pass def test_Event_setTimeUnits1(self): units = "second"; i = self.E.setTimeUnits(units) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.E.isSetTimeUnits() ) pass @@ -195,11 +195,11 @@ def test_Event_setTimeUnits2(self): units = "second"; e = libsbml.Event(2,1) i = e.setTimeUnits(units) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( units == e.getTimeUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( units == e.getTimeUnits() )) self.assertEqual( True, e.isSetTimeUnits() ) i = e.unsetTimeUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, e.isSetTimeUnits() ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -208,10 +208,10 @@ def test_Event_setTimeUnits3(self): units = "1second"; e = libsbml.Event(2,1) i = e.setTimeUnits(units) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, e.isSetTimeUnits() ) i = e.unsetTimeUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, e.isSetTimeUnits() ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -219,7 +219,7 @@ def test_Event_setTimeUnits3(self): def test_Event_setTimeUnits4(self): e = libsbml.Event(2,1) i = e.setTimeUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, e.isSetTimeUnits() ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass @@ -228,7 +228,7 @@ def test_Event_setTrigger1(self): trigger = libsbml.Trigger(2,1) trigger.setMath(libsbml.parseFormula("true")) i = self.E.setTrigger(trigger) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) self.assertEqual( False, self.E.isSetTrigger() ) pass @@ -237,26 +237,26 @@ def test_Event_setTrigger2(self): trigger = libsbml.Trigger(2,4) trigger.setMath(math1) i = self.E.setTrigger(trigger) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getTrigger() != None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getTrigger() != None ) self.assertEqual( True, self.E.isSetTrigger() ) pass def test_Event_setUseValuesFromTriggerTime1(self): e = libsbml.Event(2,4) i = e.setUseValuesFromTriggerTime(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( e.getUseValuesFromTriggerTime() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( e.getUseValuesFromTriggerTime() == False ) i = e.setUseValuesFromTriggerTime(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( e.getUseValuesFromTriggerTime() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( e.getUseValuesFromTriggerTime() == True ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass def test_Event_setUseValuesFromTriggerTime2(self): e = libsbml.Event(2,2) i = e.setUseValuesFromTriggerTime(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestFunctionDefinition.py b/src/bindings/python/test/sbml/TestFunctionDefinition.py index 67871018a7..ca0848823c 100644 --- a/src/bindings/python/test/sbml/TestFunctionDefinition.py +++ b/src/bindings/python/test/sbml/TestFunctionDefinition.py @@ -50,13 +50,13 @@ def tearDown(self): pass def test_FunctionDefinition_create(self): - self.assert_( self.FD.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) - self.assert_( self.FD.getMetaId() == "" ) - self.assert_( self.FD.getNotes() == None ) - self.assert_( self.FD.getAnnotation() == None ) - self.assert_( self.FD.getId() == "" ) - self.assert_( self.FD.getName() == "" ) - self.assert_( self.FD.getMath() == None ) + self.assertTrue( self.FD.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( self.FD.getMetaId() == "" ) + self.assertTrue( self.FD.getNotes() == None ) + self.assertTrue( self.FD.getAnnotation() == None ) + self.assertTrue( self.FD.getId() == "" ) + self.assertTrue( self.FD.getName() == "" ) + self.assertTrue( self.FD.getMath() == None ) pass def test_FunctionDefinition_createWith(self): @@ -64,19 +64,19 @@ def test_FunctionDefinition_createWith(self): fd = libsbml.FunctionDefinition(2,4) fd.setId( "pow3") fd.setMath(math) - self.assert_( fd.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) - self.assert_( fd.getMetaId() == "" ) - self.assert_( fd.getNotes() == None ) - self.assert_( fd.getAnnotation() == None ) - self.assert_( fd.getName() == "" ) + self.assertTrue( fd.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( fd.getMetaId() == "" ) + self.assertTrue( fd.getNotes() == None ) + self.assertTrue( fd.getAnnotation() == None ) + self.assertTrue( fd.getName() == "" ) math1 = fd.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( fd.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( fd.getMath() != math ) self.assertEqual( True, fd.isSetMath() ) - self.assert_(( "pow3" == fd.getId() )) + self.assertTrue(( "pow3" == fd.getId() )) self.assertEqual( True, fd.isSetId() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList _dummyList = [ fd ]; _dummyList[:] = []; del _dummyList @@ -88,14 +88,14 @@ def test_FunctionDefinition_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.FunctionDefinition(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -105,41 +105,41 @@ def test_FunctionDefinition_free_NULL(self): def test_FunctionDefinition_getArguments(self): self.FD.setMath(libsbml.parseFormula("lambda(x, y, x^y)")) - self.assert_( self.FD.getNumArguments() == 2 ) + self.assertTrue( self.FD.getNumArguments() == 2 ) math = self.FD.getArgument(0) - self.assert_( math != None ) + self.assertTrue( math != None ) self.assertEqual( True, math.isName() ) - self.assert_(( "x" == math.getName() )) - self.assert_( math.getNumChildren() == 0 ) + self.assertTrue(( "x" == math.getName() )) + self.assertTrue( math.getNumChildren() == 0 ) math = self.FD.getArgument(1) - self.assert_( math != None ) + self.assertTrue( math != None ) self.assertEqual( True, math.isName() ) - self.assert_(( "y" == math.getName() )) - self.assert_( math.getNumChildren() == 0 ) - self.assert_( self.FD.getArgument(0) == self.FD.getArgument( "x") ) - self.assert_( self.FD.getArgument(1) == self.FD.getArgument( "y") ) + self.assertTrue(( "y" == math.getName() )) + self.assertTrue( math.getNumChildren() == 0 ) + self.assertTrue( self.FD.getArgument(0) == self.FD.getArgument( "x") ) + self.assertTrue( self.FD.getArgument(1) == self.FD.getArgument( "y") ) pass def test_FunctionDefinition_getBody(self): math1 = libsbml.parseFormula("lambda(x, x)") self.FD.setMath(math1) math = self.FD.getBody() - self.assert_( math != None ) + self.assertTrue( math != None ) self.assertEqual( True, math.isName() ) - self.assert_(( "x" == math.getName() )) - self.assert_( math.getNumChildren() == 0 ) + self.assertTrue(( "x" == math.getName() )) + self.assertTrue( math.getNumChildren() == 0 ) _dummyList = [ math1 ]; _dummyList[:] = []; del _dummyList pass def test_FunctionDefinition_setId(self): id = "pow3"; self.FD.setId(id) - self.assert_(( id == self.FD.getId() )) + self.assertTrue(( id == self.FD.getId() )) self.assertEqual( True, self.FD.isSetId() ) if (self.FD.getId() == id): pass self.FD.setId(self.FD.getId()) - self.assert_(( id == self.FD.getId() )) + self.assertTrue(( id == self.FD.getId() )) self.FD.setId("") self.assertEqual( False, self.FD.isSetId() ) if (self.FD.getId() != None): @@ -150,19 +150,19 @@ def test_FunctionDefinition_setMath(self): math = libsbml.parseFormula("lambda(x, x^3)") self.FD.setMath(math) math1 = self.FD.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.FD.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.FD.getMath() != math ) self.assertEqual( True, self.FD.isSetMath() ) self.FD.setMath(self.FD.getMath()) math1 = self.FD.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.FD.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.FD.getMath() != math ) self.FD.setMath(None) self.assertEqual( False, self.FD.isSetMath() ) if (self.FD.getMath() != None): @@ -172,12 +172,12 @@ def test_FunctionDefinition_setMath(self): def test_FunctionDefinition_setName(self): name = "Cube_Me"; self.FD.setName(name) - self.assert_(( name == self.FD.getName() )) + self.assertTrue(( name == self.FD.getName() )) self.assertEqual( True, self.FD.isSetName() ) if (self.FD.getName() == name): pass self.FD.setName(self.FD.getName()) - self.assert_(( name == self.FD.getName() )) + self.assertTrue(( name == self.FD.getName() )) self.FD.setName("") self.assertEqual( False, self.FD.isSetName() ) if (self.FD.getName() != None): diff --git a/src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py b/src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py index 3da95f33c6..327a599ad3 100644 --- a/src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py +++ b/src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py @@ -52,30 +52,30 @@ def tearDown(self): def test_FunctionDefinition_setId1(self): id = "1e1"; i = self.E.setId(id) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.E.isSetId() ) pass def test_FunctionDefinition_setId2(self): id = "e1"; i = self.E.setId(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.E.getId() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.E.getId() )) self.assertEqual( True, self.E.isSetId() ) i = self.E.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetId() ) pass def test_FunctionDefinition_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() != math ) self.assertEqual( True, self.E.isSetMath() ) i = self.E.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() == None ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -83,7 +83,7 @@ def test_FunctionDefinition_setMath1(self): def test_FunctionDefinition_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -91,24 +91,24 @@ def test_FunctionDefinition_setMath2(self): def test_FunctionDefinition_setName1(self): name = "3Set_k2"; i = self.E.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.E.isSetName() ) pass def test_FunctionDefinition_setName2(self): name = "Set k2"; i = self.E.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( name == self.E.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( name == self.E.getName() )) self.assertEqual( True, self.E.isSetName() ) i = self.E.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetName() ) pass def test_FunctionDefinition_setName3(self): i = self.E.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetName() ) pass diff --git a/src/bindings/python/test/sbml/TestGetMultipleObjects.py b/src/bindings/python/test/sbml/TestGetMultipleObjects.py index 6c29ce6536..a69f3e8ac4 100644 --- a/src/bindings/python/test/sbml/TestGetMultipleObjects.py +++ b/src/bindings/python/test/sbml/TestGetMultipleObjects.py @@ -46,7 +46,7 @@ def test_GetMultipleObjects_allElements(self): if (d == None): pass list = d.getListOfAllElements() - self.assert_( list.getSize() == 37 ) + self.assertTrue( list.getSize() == 37 ) d = None pass @@ -58,30 +58,30 @@ def test_GetMultipleObjects_getId(self): if (d == None): pass obj = d.getElementBySId("no_id") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementBySId("") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementBySId("find_id") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ) obj = d.getElementBySId("func1") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementBySId("comp") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementBySId("b") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementBySId("x") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementBySId("J0") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementBySId("E0") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ) d = None pass @@ -93,128 +93,128 @@ def test_GetMultipleObjects_getMetaId(self): if (d == None): pass obj = d.getElementByMetaId("no_id") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("meta1") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_DOCUMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_DOCUMENT ) obj = d.getElementByMetaId("meta2") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ) obj = d.getElementByMetaId("meta3") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementByMetaId("meta4") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementByMetaId("meta5") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementByMetaId("meta6") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementByMetaId("meta7") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementByMetaId("meta8") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementByMetaId("meta9") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta10") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta11") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_KINETIC_LAW ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_KINETIC_LAW ) obj = d.getElementByMetaId("meta12") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_EVENT ) obj = d.getElementByMetaId("meta13") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ) obj = d.getElementByMetaId("meta14") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_TRIGGER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_TRIGGER ) obj = d.getElementByMetaId("meta15") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) obj = d.getElementByMetaId("meta16") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) obj = d.getElementByMetaId("meta17") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_DELAY ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_DELAY ) obj = d.getElementByMetaId("meta18") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementByMetaId("meta19") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_PRIORITY ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_PRIORITY ) obj = d.getElementByMetaId("meta20") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementByMetaId("meta21") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementByMetaId("meta22") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementByMetaId("meta23") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementByMetaId("meta24") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_RULE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_RULE ) obj = d.getElementByMetaId("meta25") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) obj = d.getElementByMetaId("meta26") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) obj = d.getElementByMetaId("meta27") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) obj = d.getElementByMetaId("meta28") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) obj = d.getElementByMetaId("meta29") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_UNIT_DEFINITION ) obj = d.getElementByMetaId("meta30") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) obj = d.getElementByMetaId("meta31") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_UNIT ) obj = d.getElementByMetaId("meta32") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT ) obj = d.getElementByMetaId("meta33") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementByMetaId("meta34") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( obj.getItemTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta35") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) d = None pass @@ -226,25 +226,25 @@ def test_GetMultipleObjects_noAssignments(self): if (d.getModel() == None): pass obj = d.getElementBySId("ia") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("ia_meta") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementBySId("ar") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("ar_meta") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) obj = d.getElementBySId("rr") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("rr_meta") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) obj = d.getElementBySId("ea") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("ea_meta") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) d = None pass @@ -256,12 +256,12 @@ def test_GetMultipleObjects_noLocalParameters(self): if (d == None): pass rxn = d.getElementBySId("J0") - self.assert_( rxn != None ) + self.assertTrue( rxn != None ) obj = rxn.getElementBySId("x") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = rxn.getElementByMetaId("meta28") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) d = None pass @@ -273,10 +273,10 @@ def test_GetMultipleObjects_noUnits(self): if (d == None): pass obj = d.getElementBySId("volume") - self.assert_( obj == None ) + self.assertTrue( obj == None ) obj = d.getElementByMetaId("meta30") - self.assert_( obj != None ) - self.assert_( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( obj != None ) + self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) d = None pass diff --git a/src/bindings/python/test/sbml/TestInitialAssignment.py b/src/bindings/python/test/sbml/TestInitialAssignment.py index 3f5254c5d3..db7a763402 100644 --- a/src/bindings/python/test/sbml/TestInitialAssignment.py +++ b/src/bindings/python/test/sbml/TestInitialAssignment.py @@ -50,12 +50,12 @@ def tearDown(self): pass def test_InitialAssignment_create(self): - self.assert_( self.IA.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) - self.assert_( self.IA.getMetaId() == "" ) - self.assert_( self.IA.getNotes() == None ) - self.assert_( self.IA.getAnnotation() == None ) - self.assert_( self.IA.getSymbol() == "" ) - self.assert_( self.IA.getMath() == None ) + self.assertTrue( self.IA.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) + self.assertTrue( self.IA.getMetaId() == "" ) + self.assertTrue( self.IA.getNotes() == None ) + self.assertTrue( self.IA.getAnnotation() == None ) + self.assertTrue( self.IA.getSymbol() == "" ) + self.assertTrue( self.IA.getMath() == None ) pass def test_InitialAssignment_createWithNS(self): @@ -64,14 +64,14 @@ def test_InitialAssignment_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,3) sbmlns.addNamespaces(xmlns) object = libsbml.InitialAssignment(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 3 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 3 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -83,19 +83,19 @@ def test_InitialAssignment_setMath(self): math = libsbml.parseFormula("2 * k") self.IA.setMath(math) math1 = self.IA.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "2 * k" == formula )) - self.assert_( self.IA.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "2 * k" == formula )) + self.assertTrue( self.IA.getMath() != math ) self.assertEqual( True, self.IA.isSetMath() ) self.IA.setMath(self.IA.getMath()) math1 = self.IA.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "2 * k" == formula )) - self.assert_( self.IA.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "2 * k" == formula )) + self.assertTrue( self.IA.getMath() != math ) self.IA.setMath(None) self.assertEqual( False, self.IA.isSetMath() ) if (self.IA.getMath() != None): @@ -106,12 +106,12 @@ def test_InitialAssignment_setMath(self): def test_InitialAssignment_setSymbol(self): Symbol = "k2"; self.IA.setSymbol(Symbol) - self.assert_(( Symbol == self.IA.getSymbol() )) + self.assertTrue(( Symbol == self.IA.getSymbol() )) self.assertEqual( True, self.IA.isSetSymbol() ) if (self.IA.getSymbol() == Symbol): pass self.IA.setSymbol(self.IA.getSymbol()) - self.assert_(( Symbol == self.IA.getSymbol() )) + self.assertTrue(( Symbol == self.IA.getSymbol() )) self.IA.setSymbol("") self.assertEqual( False, self.IA.isSetSymbol() ) if (self.IA.getSymbol() != None): diff --git a/src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py b/src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py index f85132a581..960bcc1146 100644 --- a/src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py +++ b/src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py @@ -52,12 +52,12 @@ def tearDown(self): def test_InitialAssignment_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() != math ) self.assertEqual( True, self.E.isSetMath() ) i = self.E.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.E.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.E.getMath() == None ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -65,7 +65,7 @@ def test_InitialAssignment_setMath1(self): def test_InitialAssignment_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.E.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.E.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -73,18 +73,18 @@ def test_InitialAssignment_setMath2(self): def test_InitialAssignment_setSymbol1(self): id = "1e1"; i = self.E.setSymbol(id) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.E.isSetSymbol() ) pass def test_InitialAssignment_setSymbol2(self): id = "e1"; i = self.E.setSymbol(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.E.getSymbol() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.E.getSymbol() )) self.assertEqual( True, self.E.isSetSymbol() ) i = self.E.setSymbol("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetSymbol() ) pass diff --git a/src/bindings/python/test/sbml/TestInternalConsistencyChecks.py b/src/bindings/python/test/sbml/TestInternalConsistencyChecks.py index 0d96255b67..60efe68893 100644 --- a/src/bindings/python/test/sbml/TestInternalConsistencyChecks.py +++ b/src/bindings/python/test/sbml/TestInternalConsistencyChecks.py @@ -43,12 +43,12 @@ def test_internal_consistency_check_20306(self): fd = m.createFunctionDefinition() fd.setId("fd") errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20306 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20306 ) ast = libsbml.parseFormula("lambda(x, 2*x)") fd.setMath(ast) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -59,12 +59,12 @@ def test_internal_consistency_check_20307(self): ast = libsbml.parseFormula("lambda(x, 2*x)") fd.setMath(ast) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20307 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20307 ) fd.setId("fd") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -73,12 +73,12 @@ def test_internal_consistency_check_20419(self): m = d.createModel() ud = m.createUnitDefinition() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20419 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20419 ) ud.setId("ud") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -89,33 +89,33 @@ def test_internal_consistency_check_20421(self): ud.setId("ud") u = ud.createUnit() errors = d.checkInternalConsistency() - self.assert_( errors == 4 ) - self.assert_( d.getError(0).getErrorId() == 20421 ) - self.assert_( d.getError(1).getErrorId() == 20421 ) - self.assert_( d.getError(2).getErrorId() == 20421 ) - self.assert_( d.getError(3).getErrorId() == 20421 ) + self.assertTrue( errors == 4 ) + self.assertTrue( d.getError(0).getErrorId() == 20421 ) + self.assertTrue( d.getError(1).getErrorId() == 20421 ) + self.assertTrue( d.getError(2).getErrorId() == 20421 ) + self.assertTrue( d.getError(3).getErrorId() == 20421 ) u.setKind(libsbml.UNIT_KIND_MOLE) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 3 ) - self.assert_( d.getError(0).getErrorId() == 20421 ) - self.assert_( d.getError(1).getErrorId() == 20421 ) - self.assert_( d.getError(2).getErrorId() == 20421 ) + self.assertTrue( errors == 3 ) + self.assertTrue( d.getError(0).getErrorId() == 20421 ) + self.assertTrue( d.getError(1).getErrorId() == 20421 ) + self.assertTrue( d.getError(2).getErrorId() == 20421 ) u.setExponent(1.0) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 20421 ) - self.assert_( d.getError(1).getErrorId() == 20421 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 20421 ) + self.assertTrue( d.getError(1).getErrorId() == 20421 ) u.setScale(0) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20421 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20421 ) u.setMultiplier(1.0) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -124,18 +124,18 @@ def test_internal_consistency_check_20517(self): m = d.createModel() c = m.createCompartment() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 20517 ) - self.assert_( d.getError(1).getErrorId() == 20517 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 20517 ) + self.assertTrue( d.getError(1).getErrorId() == 20517 ) c.setId("c") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20517 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20517 ) c.setConstant(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -147,42 +147,42 @@ def test_internal_consistency_check_20623(self): c.setConstant(True) s = m.createSpecies() errors = d.checkInternalConsistency() - self.assert_( errors == 5 ) - self.assert_( d.getError(0).getErrorId() == 20623 ) - self.assert_( d.getError(1).getErrorId() == 20614 ) - self.assert_( d.getError(2).getErrorId() == 20623 ) - self.assert_( d.getError(3).getErrorId() == 20623 ) - self.assert_( d.getError(4).getErrorId() == 20623 ) + self.assertTrue( errors == 5 ) + self.assertTrue( d.getError(0).getErrorId() == 20623 ) + self.assertTrue( d.getError(1).getErrorId() == 20614 ) + self.assertTrue( d.getError(2).getErrorId() == 20623 ) + self.assertTrue( d.getError(3).getErrorId() == 20623 ) + self.assertTrue( d.getError(4).getErrorId() == 20623 ) s.setId("s") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 4 ) - self.assert_( d.getError(0).getErrorId() == 20614 ) - self.assert_( d.getError(1).getErrorId() == 20623 ) - self.assert_( d.getError(2).getErrorId() == 20623 ) - self.assert_( d.getError(3).getErrorId() == 20623 ) + self.assertTrue( errors == 4 ) + self.assertTrue( d.getError(0).getErrorId() == 20614 ) + self.assertTrue( d.getError(1).getErrorId() == 20623 ) + self.assertTrue( d.getError(2).getErrorId() == 20623 ) + self.assertTrue( d.getError(3).getErrorId() == 20623 ) s.setCompartment("c") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 3 ) - self.assert_( d.getError(0).getErrorId() == 20623 ) - self.assert_( d.getError(1).getErrorId() == 20623 ) - self.assert_( d.getError(2).getErrorId() == 20623 ) + self.assertTrue( errors == 3 ) + self.assertTrue( d.getError(0).getErrorId() == 20623 ) + self.assertTrue( d.getError(1).getErrorId() == 20623 ) + self.assertTrue( d.getError(2).getErrorId() == 20623 ) s.setHasOnlySubstanceUnits(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 20623 ) - self.assert_( d.getError(1).getErrorId() == 20623 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 20623 ) + self.assertTrue( d.getError(1).getErrorId() == 20623 ) s.setBoundaryCondition(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20623 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20623 ) s.setConstant(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -191,18 +191,18 @@ def test_internal_consistency_check_20706(self): m = d.createModel() p = m.createParameter() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 20706 ) - self.assert_( d.getError(1).getErrorId() == 20706 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 20706 ) + self.assertTrue( d.getError(1).getErrorId() == 20706 ) p.setId("c") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20706 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20706 ) p.setConstant(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -212,13 +212,13 @@ def test_internal_consistency_check_20804(self): ia = m.createInitialAssignment() ia.setSymbol("fd") errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20804 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20804 ) ast = libsbml.parseFormula("lambda(x, 2*x)") ia.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -229,12 +229,12 @@ def test_internal_consistency_check_20805(self): ast = libsbml.parseFormula("lambda(x, 2*x)") ia.setMath(ast) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20805 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20805 ) ia.setSymbol("fd") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -243,13 +243,13 @@ def test_internal_consistency_check_20907_alg(self): m = d.createModel() r = m.createAlgebraicRule() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20907 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20907 ) ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -259,13 +259,13 @@ def test_internal_consistency_check_20907_assign(self): r = m.createAssignmentRule() r.setVariable("fd") errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20907 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20907 ) ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -275,13 +275,13 @@ def test_internal_consistency_check_20907_rate(self): r = m.createRateRule() r.setVariable("fd") errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20907 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20907 ) ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -292,12 +292,12 @@ def test_internal_consistency_check_20908(self): ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20908 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20908 ) r.setVariable("fd") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -308,12 +308,12 @@ def test_internal_consistency_check_20909(self): ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20909 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20909 ) r.setVariable("fd") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -322,13 +322,13 @@ def test_internal_consistency_check_21007(self): m = d.createModel() r = m.createConstraint() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21007 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21007 ) ast = libsbml.parseFormula("lambda(x, 2*x)") r.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -340,14 +340,14 @@ def test_internal_consistency_check_21101(self): r.setReversible(True) r.setFast(False) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21101 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21101 ) sr = r.createReactant() sr.setSpecies("s") sr.setConstant(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -359,25 +359,25 @@ def test_internal_consistency_check_21110(self): sr.setSpecies("s") sr.setConstant(True) errors = d.checkInternalConsistency() - self.assert_( errors == 3 ) - self.assert_( d.getError(0).getErrorId() == 21110 ) - self.assert_( d.getError(1).getErrorId() == 21110 ) - self.assert_( d.getError(2).getErrorId() == 21110 ) + self.assertTrue( errors == 3 ) + self.assertTrue( d.getError(0).getErrorId() == 21110 ) + self.assertTrue( d.getError(1).getErrorId() == 21110 ) + self.assertTrue( d.getError(2).getErrorId() == 21110 ) r.setId("r") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 21110 ) - self.assert_( d.getError(1).getErrorId() == 21110 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 21110 ) + self.assertTrue( d.getError(1).getErrorId() == 21110 ) r.setReversible(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21110 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21110 ) r.setFast(False) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -390,18 +390,18 @@ def test_internal_consistency_check_21116(self): r.setFast(False) sr = r.createReactant() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 21116 ) - self.assert_( d.getError(1).getErrorId() == 21116 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 21116 ) + self.assertTrue( d.getError(1).getErrorId() == 21116 ) sr.setSpecies("s") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21116 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21116 ) sr.setConstant(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -418,12 +418,12 @@ def test_internal_consistency_check_21117(self): msr = r.createModifier() d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21117 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21117 ) msr.setSpecies("s") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -441,13 +441,13 @@ def test_internal_consistency_check_21130(self): lp = kl.createLocalParameter() lp.setId("s") errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21130 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21130 ) ast = libsbml.parseFormula("2*x") kl.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -466,12 +466,12 @@ def test_internal_consistency_check_21172(self): kl.setMath(ast) lp = kl.createLocalParameter() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21172 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21172 ) lp.setId("pp") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -486,15 +486,15 @@ def test_internal_consistency_check_21201(self): ea.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21201 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21201 ) t = r.createTrigger() t.setPersistent(True) t.setInitialValue(False) t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -510,14 +510,14 @@ def test_internal_consistency_check_21203(self): t.setInitialValue(False) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) - #self.assert_( d.getError(0).getErrorId() == 21203 ) + self.assertTrue( errors == 0 ) + #self.assertTrue( d.getError(0).getErrorId() == 21203 ) ea = r.createEventAssignment() ea.setVariable("ea") ea.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -535,12 +535,12 @@ def test_internal_consistency_check_21209(self): t.setInitialValue(False) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21209 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21209 ) t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -560,12 +560,12 @@ def test_internal_consistency_check_21210(self): delay = r.createDelay() d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21210 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21210 ) delay.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -583,12 +583,12 @@ def test_internal_consistency_check_21213(self): t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21213 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21213 ) ea.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -606,12 +606,12 @@ def test_internal_consistency_check_21214(self): t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21214 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21214 ) ea.setVariable("s") d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -629,12 +629,12 @@ def test_internal_consistency_check_21225(self): t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21225 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21225 ) r.setUseValuesFromTriggerTime(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -651,18 +651,18 @@ def test_internal_consistency_check_21226(self): t.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) - self.assert_( d.getError(0).getErrorId() == 21226 ) - self.assert_( d.getError(1).getErrorId() == 21226 ) + self.assertTrue( errors == 2 ) + self.assertTrue( d.getError(0).getErrorId() == 21226 ) + self.assertTrue( d.getError(1).getErrorId() == 21226 ) t.setPersistent(True) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21226 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21226 ) t.setInitialValue(False) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -682,12 +682,12 @@ def test_internal_consistency_check_21231(self): prior = r.createPriority() d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21231 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21231 ) prior.setMath(ast) d.getErrorLog().clearLog() errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -701,8 +701,8 @@ def test_internal_consistency_check_99901(self): c.setId("c") m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -715,8 +715,8 @@ def test_internal_consistency_check_99902(self): c.setId("c") m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -732,7 +732,7 @@ def test_internal_consistency_check_99903(self): r.setVariable("c") r.setFormula("2*3") errors = d.checkInternalConsistency() - self.assert_( errors == 3 ) + self.assertTrue( errors == 3 ) d = None pass @@ -753,7 +753,7 @@ def test_internal_consistency_check_99903_localparam(self): p.setConstant(False) kl.addParameter(p) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -771,7 +771,7 @@ def test_internal_consistency_check_99903_param(self): r.setVariable("c") r.setFormula("2*3") errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) + self.assertTrue( errors == 2 ) d = None pass @@ -784,8 +784,8 @@ def test_internal_consistency_check_99904(self): c.setMetaId("mmm") m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -804,7 +804,7 @@ def test_internal_consistency_check_99904_kl(self): kl.setMetaId("mmm") r.setKineticLaw(kl) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -817,8 +817,8 @@ def test_internal_consistency_check_99904_model(self): m.setMetaId("mmm") d.setModel(m) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20201 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20201 ) d = None pass @@ -833,7 +833,7 @@ def test_internal_consistency_check_99904_param(self): p.setMetaId("mmm") m.addParameter(p) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -848,7 +848,7 @@ def test_internal_consistency_check_99904_react(self): r.setMetaId("mmm") m.addReaction(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -863,7 +863,7 @@ def test_internal_consistency_check_99904_rule_alg(self): r.setFormula("2") m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -880,7 +880,7 @@ def test_internal_consistency_check_99904_rule_assign(self): r.setMetaId("mmm") m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -897,7 +897,7 @@ def test_internal_consistency_check_99904_rule_rate(self): r.setMetaId("mmm") m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -913,7 +913,7 @@ def test_internal_consistency_check_99904_species(self): s.setMetaId("mmm") m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -933,8 +933,8 @@ def test_internal_consistency_check_99904_speciesRef(self): sr.setMetaId("mmm") r.addProduct(sr) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21101 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21101 ) d = None pass @@ -951,7 +951,7 @@ def test_internal_consistency_check_99904_unit(self): u.setKind(libsbml.UNIT_KIND_MOLE) ud.addUnit(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -967,7 +967,7 @@ def test_internal_consistency_check_99904_unitdef(self): u.createUnit() m.addUnitDefinition(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -980,8 +980,8 @@ def test_internal_consistency_check_99905(self): c.setSBOTerm(2) m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -994,7 +994,7 @@ def test_internal_consistency_check_99905_ct(self): ct.setSBOTerm(5) m.addCompartmentType(ct) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1008,7 +1008,7 @@ def test_internal_consistency_check_99905_delay(self): e.setDelay(delay) m.addEvent(e) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1024,7 +1024,7 @@ def test_internal_consistency_check_99905_species(self): s.setSBOTerm(2) m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1037,7 +1037,7 @@ def test_internal_consistency_check_99905_st(self): ct.setSBOTerm(5) m.addSpeciesType(ct) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1058,7 +1058,7 @@ def test_internal_consistency_check_99905_stoichmath(self): sm.setSBOTerm(5) sr.setStoichiometryMath(sm) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1072,7 +1072,7 @@ def test_internal_consistency_check_99905_trigger(self): e.setTrigger(trigger) m.addEvent(e) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1087,7 +1087,7 @@ def test_internal_consistency_check_99905_unit(self): u.setSBOTerm(9) ud.addUnit(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1101,7 +1101,7 @@ def test_internal_consistency_check_99905_unitdef(self): u.createUnit() m.addUnitDefinition(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1114,8 +1114,8 @@ def test_internal_consistency_check_99906(self): c.setUnits("mole") m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -1128,8 +1128,8 @@ def test_internal_consistency_check_99907(self): c.unsetVolume() m.addCompartment(c) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 10103 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 10103 ) d = None pass @@ -1141,7 +1141,7 @@ def test_internal_consistency_check_99908(self): ct.setId("ct") m.addCompartmentType(ct) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1152,7 +1152,7 @@ def test_internal_consistency_check_99909(self): d.setLevelAndVersion(2,1,False) m.addConstraint(ct) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1166,7 +1166,7 @@ def test_internal_consistency_check_99910(self): c.setConstant(False) m.addEvent(e) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1187,8 +1187,8 @@ def test_internal_consistency_check_99911_ea(self): ea.setMath(ast) e.addEventAssignment(ea) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21203 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21203 ) d = None pass @@ -1200,7 +1200,7 @@ def test_internal_consistency_check_99911_event(self): e.setSBOTerm(2) m.addEvent(e) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1213,7 +1213,7 @@ def test_internal_consistency_check_99911_fd(self): fd.setSBOTerm(2) m.addFunctionDefinition(fd) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1231,7 +1231,7 @@ def test_internal_consistency_check_99911_kl(self): p.setId("p") r.setKineticLaw(kl) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1242,8 +1242,8 @@ def test_internal_consistency_check_99911_model(self): m.setSBOTerm(2) d.setModel(m) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 20201 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 20201 ) d = None pass @@ -1256,7 +1256,7 @@ def test_internal_consistency_check_99911_param(self): p.setSBOTerm(2) m.addParameter(p) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1269,7 +1269,7 @@ def test_internal_consistency_check_99911_react(self): r.setSBOTerm(2) m.addReaction(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1281,7 +1281,7 @@ def test_internal_consistency_check_99911_rule_alg(self): r.setSBOTerm(2) m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1297,7 +1297,7 @@ def test_internal_consistency_check_99911_rule_assign(self): r.setSBOTerm(2) m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1313,7 +1313,7 @@ def test_internal_consistency_check_99911_rule_rate(self): r.setSBOTerm(2) m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1333,8 +1333,8 @@ def test_internal_consistency_check_99911_speciesRef(self): sr.setSBOTerm(4) r.addReactant(sr) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21101 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21101 ) d = None pass @@ -1348,7 +1348,7 @@ def test_internal_consistency_check_99912(self): c.setConstant(False) m.addFunctionDefinition(fd) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1362,7 +1362,7 @@ def test_internal_consistency_check_99913(self): c.setConstant(False) m.addInitialAssignment(ia) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1374,7 +1374,7 @@ def test_internal_consistency_check_99914(self): r.setVariable("kk") m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1386,7 +1386,7 @@ def test_internal_consistency_check_99915_alg(self): r.setUnits("kk") m.addRule(r) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1403,7 +1403,7 @@ def test_internal_consistency_check_99915_assign(self): r.setFormula("2") r.setUnits("mmm") errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1420,7 +1420,7 @@ def test_internal_consistency_check_99915_rate(self): r.setVariable("c") r.setUnits("mmm") errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1440,7 +1440,7 @@ def test_internal_consistency_check_99916_reaction(self): sr.setSpecies("s") m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1459,7 +1459,7 @@ def test_internal_consistency_check_99916_rule(self): r.setVariable("s") r.setFormula("2") errors = d.checkInternalConsistency() - self.assert_( errors == 2 ) + self.assertTrue( errors == 2 ) d = None pass @@ -1475,7 +1475,7 @@ def test_internal_consistency_check_99917(self): s.setSpatialSizeUnits("kkk") m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1491,7 +1491,7 @@ def test_internal_consistency_check_99918(self): s.setSpeciesType("kkk") m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1507,7 +1507,7 @@ def test_internal_consistency_check_99919(self): s.setHasOnlySubstanceUnits(True) m.addSpecies(s) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1527,8 +1527,8 @@ def test_internal_consistency_check_99920(self): sr.setId("mmm") r.addProduct(sr) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21101 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21101 ) d = None pass @@ -1548,8 +1548,8 @@ def test_internal_consistency_check_99921(self): sr.setName("mmm") r.addReactant(sr) errors = d.checkInternalConsistency() - self.assert_( errors == 1 ) - self.assert_( d.getError(0).getErrorId() == 21101 ) + self.assertTrue( errors == 1 ) + self.assertTrue( d.getError(0).getErrorId() == 21101 ) d = None pass @@ -1561,7 +1561,7 @@ def test_internal_consistency_check_99922(self): d.setLevelAndVersion(2,1,False) m.addSpeciesType(ct) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1581,7 +1581,7 @@ def test_internal_consistency_check_99923(self): sr.setSpecies("s") sr.setStoichiometryMath(sm) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1598,7 +1598,7 @@ def test_internal_consistency_check_99924(self): u.setMultiplier(9) ud.addUnit(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass @@ -1615,7 +1615,7 @@ def test_internal_consistency_check_99925(self): u.setOffset(9) ud.addUnit(u) errors = d.checkInternalConsistency() - self.assert_( errors == 0 ) + self.assertTrue( errors == 0 ) d = None pass diff --git a/src/bindings/python/test/sbml/TestKineticLaw.py b/src/bindings/python/test/sbml/TestKineticLaw.py index 6aae8a566e..7d89c7ed6a 100644 --- a/src/bindings/python/test/sbml/TestKineticLaw.py +++ b/src/bindings/python/test/sbml/TestKineticLaw.py @@ -53,24 +53,24 @@ def test_KineticLaw_addParameter(self): p = libsbml.Parameter(2,4) p.setId( "p") self.kl.addParameter(p) - self.assert_( self.kl.getNumParameters() == 1 ) + self.assertTrue( self.kl.getNumParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_create(self): - self.assert_( self.kl.getTypeCode() == libsbml.SBML_KINETIC_LAW ) - self.assert_( self.kl.getMetaId() == "" ) - self.assert_( self.kl.getNotes() == None ) - self.assert_( self.kl.getAnnotation() == None ) - self.assert_( self.kl.getFormula() == "" ) - self.assert_( self.kl.getMath() == None ) - self.assert_( self.kl.getTimeUnits() == "" ) - self.assert_( self.kl.getSubstanceUnits() == "" ) + self.assertTrue( self.kl.getTypeCode() == libsbml.SBML_KINETIC_LAW ) + self.assertTrue( self.kl.getMetaId() == "" ) + self.assertTrue( self.kl.getNotes() == None ) + self.assertTrue( self.kl.getAnnotation() == None ) + self.assertTrue( self.kl.getFormula() == "" ) + self.assertTrue( self.kl.getMath() == None ) + self.assertTrue( self.kl.getTimeUnits() == "" ) + self.assertTrue( self.kl.getSubstanceUnits() == "" ) self.assertEqual( False, self.kl.isSetFormula() ) self.assertEqual( False, self.kl.isSetMath() ) self.assertEqual( False, self.kl.isSetTimeUnits() ) self.assertEqual( False, self.kl.isSetSubstanceUnits() ) - self.assert_( self.kl.getNumParameters() == 0 ) + self.assertTrue( self.kl.getNumParameters() == 0 ) pass def test_KineticLaw_createWithNS(self): @@ -79,14 +79,14 @@ def test_KineticLaw_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.KineticLaw(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_KINETIC_LAW ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_KINETIC_LAW ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -105,13 +105,13 @@ def test_KineticLaw_getParameter(self): self.kl.addParameter(k2) _dummyList = [ k1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ k2 ]; _dummyList[:] = []; del _dummyList - self.assert_( self.kl.getNumParameters() == 2 ) + self.assertTrue( self.kl.getNumParameters() == 2 ) k1 = self.kl.getParameter(0) k2 = self.kl.getParameter(1) - self.assert_(( "k1" == k1.getId() )) - self.assert_(( "k2" == k2.getId() )) - self.assert_( k1.getValue() == 3.14 ) - self.assert_( k2.getValue() == 2.72 ) + self.assertTrue(( "k1" == k1.getId() )) + self.assertTrue(( "k2" == k2.getId() )) + self.assertTrue( k1.getValue() == 3.14 ) + self.assertTrue( k2.getValue() == 2.72 ) pass def test_KineticLaw_getParameterById(self): @@ -125,13 +125,13 @@ def test_KineticLaw_getParameterById(self): self.kl.addParameter(k2) _dummyList = [ k1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ k2 ]; _dummyList[:] = []; del _dummyList - self.assert_( self.kl.getNumParameters() == 2 ) + self.assertTrue( self.kl.getNumParameters() == 2 ) k1 = self.kl.getParameter( "k1") k2 = self.kl.getParameter( "k2") - self.assert_(( "k1" == k1.getId() )) - self.assert_(( "k2" == k2.getId() )) - self.assert_( k1.getValue() == 3.14 ) - self.assert_( k2.getValue() == 2.72 ) + self.assertTrue(( "k1" == k1.getId() )) + self.assertTrue(( "k2" == k2.getId() )) + self.assertTrue( k1.getValue() == 3.14 ) + self.assertTrue( k2.getValue() == 2.72 ) pass def test_KineticLaw_removeParameter(self): @@ -139,12 +139,12 @@ def test_KineticLaw_removeParameter(self): o2 = self.kl.createParameter() o3 = self.kl.createParameter() o3.setId("test") - self.assert_( self.kl.removeParameter(0) == o1 ) - self.assert_( self.kl.getNumParameters() == 2 ) - self.assert_( self.kl.removeParameter(0) == o2 ) - self.assert_( self.kl.getNumParameters() == 1 ) - self.assert_( self.kl.removeParameter("test") == o3 ) - self.assert_( self.kl.getNumParameters() == 0 ) + self.assertTrue( self.kl.removeParameter(0) == o1 ) + self.assertTrue( self.kl.getNumParameters() == 2 ) + self.assertTrue( self.kl.removeParameter(0) == o2 ) + self.assertTrue( self.kl.getNumParameters() == 1 ) + self.assertTrue( self.kl.removeParameter("test") == o3 ) + self.assertTrue( self.kl.getNumParameters() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -160,12 +160,12 @@ def test_KineticLaw_setBadFormula(self): def test_KineticLaw_setFormula(self): formula = "k1*X0"; self.kl.setFormula(formula) - self.assert_(( formula == self.kl.getFormula() )) + self.assertTrue(( formula == self.kl.getFormula() )) self.assertEqual( True, self.kl.isSetFormula() ) if (self.kl.getFormula() == formula): pass self.kl.setFormula(self.kl.getFormula()) - self.assert_(( formula == self.kl.getFormula() )) + self.assertTrue(( formula == self.kl.getFormula() )) self.kl.setFormula("") self.assertEqual( False, self.kl.isSetFormula() ) if (self.kl.getFormula() != None): @@ -179,7 +179,7 @@ def test_KineticLaw_setFormulaFromMath(self): self.kl.setMath(math) self.assertEqual( True, self.kl.isSetMath() ) self.assertEqual( True, self.kl.isSetFormula() ) - self.assert_(( "k1 * X0" == self.kl.getFormula() )) + self.assertTrue(( "k1 * X0" == self.kl.getFormula() )) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -187,19 +187,19 @@ def test_KineticLaw_setMath(self): math = libsbml.parseFormula("k3 / k2") self.kl.setMath(math) math1 = self.kl.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "k3 / k2" == formula )) - self.assert_( self.kl.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "k3 / k2" == formula )) + self.assertTrue( self.kl.getMath() != math ) self.assertEqual( True, self.kl.isSetMath() ) self.kl.setMath(self.kl.getMath()) math1 = self.kl.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "k3 / k2" == formula )) - self.assert_( self.kl.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "k3 / k2" == formula )) + self.assertTrue( self.kl.getMath() != math ) self.kl.setMath(None) self.assertEqual( False, self.kl.isSetMath() ) if (self.kl.getMath() != None): @@ -215,7 +215,7 @@ def test_KineticLaw_setMathFromFormula(self): self.assertEqual( True, self.kl.isSetMath() ) self.assertEqual( True, self.kl.isSetFormula() ) formula = libsbml.formulaToString(self.kl.getMath()) - self.assert_(( "k3 / k2" == formula )) + self.assertTrue(( "k3 / k2" == formula )) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestKineticLaw_newSetters.py b/src/bindings/python/test/sbml/TestKineticLaw_newSetters.py index cccee30146..66869ecdd6 100644 --- a/src/bindings/python/test/sbml/TestKineticLaw_newSetters.py +++ b/src/bindings/python/test/sbml/TestKineticLaw_newSetters.py @@ -53,11 +53,11 @@ def test_KineticLaw_addParameter1(self): self.kl = libsbml.KineticLaw(2,2) p = libsbml.Parameter(2,2) i = self.kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setId( "p") i = self.kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.kl.getNumParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.kl.getNumParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass @@ -67,8 +67,8 @@ def test_KineticLaw_addParameter2(self): p = libsbml.Parameter(2,1) p.setId( "p") i = self.kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( self.kl.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( self.kl.getNumParameters() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass @@ -78,8 +78,8 @@ def test_KineticLaw_addParameter3(self): p = libsbml.Parameter(1,2) p.setId( "p") i = self.kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( self.kl.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( self.kl.getNumParameters() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass @@ -88,38 +88,38 @@ def test_KineticLaw_addParameter4(self): self.kl = libsbml.KineticLaw(2,2) p = None i = self.kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( self.kl.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( self.kl.getNumParameters() == 0 ) _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_createParameter(self): self.kl = libsbml.KineticLaw(2,2) p = self.kl.createParameter() - self.assert_( self.kl.getNumParameters() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( self.kl.getNumParameters() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setFormula1(self): formula = "k1*X0"; i = self.kl.setFormula(formula) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( formula == self.kl.getFormula() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( formula == self.kl.getFormula() )) self.assertEqual( True, self.kl.isSetFormula() ) pass def test_KineticLaw_setFormula2(self): i = self.kl.setFormula("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.kl.isSetFormula() ) pass def test_KineticLaw_setFormula3(self): formula = "k1 X0"; i = self.kl.setFormula(formula) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.kl.isSetFormula() ) pass @@ -132,13 +132,13 @@ def test_KineticLaw_setMath1(self): math.addChild(a) math.addChild(b) i = self.kl.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.kl.isSetMath() ) math1 = self.kl.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "a * b" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "a * b" == formula )) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -148,33 +148,33 @@ def test_KineticLaw_setMath2(self): a.setName( "a") math.addChild(a) i = self.kl.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.kl.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setMath3(self): i = self.kl.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.kl.isSetMath() ) pass def test_KineticLaw_setSubstanceUnits1(self): i = self.kl.setSubstanceUnits( "mole") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.kl.isSetSubstanceUnits() ) i = self.kl.unsetSubstanceUnits() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.kl.isSetSubstanceUnits() ) pass def test_KineticLaw_setSubstanceUnits2(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setSubstanceUnits( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, kl1.isSetSubstanceUnits() ) i = kl1.unsetSubstanceUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetSubstanceUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass @@ -182,10 +182,10 @@ def test_KineticLaw_setSubstanceUnits2(self): def test_KineticLaw_setSubstanceUnits3(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setSubstanceUnits( "1second") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, kl1.isSetSubstanceUnits() ) i = kl1.unsetSubstanceUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetSubstanceUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass @@ -193,27 +193,27 @@ def test_KineticLaw_setSubstanceUnits3(self): def test_KineticLaw_setSubstanceUnits4(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setSubstanceUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetSubstanceUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setTimeUnits1(self): i = self.kl.setTimeUnits( "second") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.kl.isSetTimeUnits() ) i = self.kl.unsetTimeUnits() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.kl.isSetTimeUnits() ) pass def test_KineticLaw_setTimeUnits2(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setTimeUnits( "second") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, kl1.isSetTimeUnits() ) i = kl1.unsetTimeUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetTimeUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass @@ -221,10 +221,10 @@ def test_KineticLaw_setTimeUnits2(self): def test_KineticLaw_setTimeUnits3(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setTimeUnits( "1second") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, kl1.isSetTimeUnits() ) i = kl1.unsetTimeUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetTimeUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass @@ -232,7 +232,7 @@ def test_KineticLaw_setTimeUnits3(self): def test_KineticLaw_setTimeUnits4(self): kl1 = libsbml.KineticLaw(1,2) i = kl1.setTimeUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, kl1.isSetTimeUnits() ) _dummyList = [ kl1 ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestL3Compartment.py b/src/bindings/python/test/sbml/TestL3Compartment.py index 3978a8425a..787d81b07b 100644 --- a/src/bindings/python/test/sbml/TestL3Compartment.py +++ b/src/bindings/python/test/sbml/TestL3Compartment.py @@ -53,33 +53,33 @@ def tearDown(self): pass def test_L3_Compartment_NS(self): - self.assert_( self.C.getNamespaces() != None ) - self.assert_( self.C.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.C.getNamespaces().getURI(0) )) + self.assertTrue( self.C.getNamespaces() != None ) + self.assertTrue( self.C.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.C.getNamespaces().getURI(0) )) pass def test_L3_Compartment_constant(self): - self.assert_( self.C.isSetConstant() == False ) + self.assertTrue( self.C.isSetConstant() == False ) self.C.setConstant(True) - self.assert_( self.C.getConstant() == True ) - self.assert_( self.C.isSetConstant() == True ) + self.assertTrue( self.C.getConstant() == True ) + self.assertTrue( self.C.isSetConstant() == True ) self.C.setConstant(False) - self.assert_( self.C.getConstant() == False ) - self.assert_( self.C.isSetConstant() == True ) + self.assertTrue( self.C.getConstant() == False ) + self.assertTrue( self.C.isSetConstant() == True ) pass def test_L3_Compartment_create(self): - self.assert_( self.C.getTypeCode() == libsbml.SBML_COMPARTMENT ) - self.assert_( self.C.getMetaId() == "" ) - self.assert_( self.C.getNotes() == None ) - self.assert_( self.C.getAnnotation() == None ) - self.assert_( self.C.getId() == "" ) - self.assert_( self.C.getName() == "" ) - self.assert_( self.C.getUnits() == "" ) - self.assert_( self.C.getOutside() == "" ) + self.assertTrue( self.C.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( self.C.getMetaId() == "" ) + self.assertTrue( self.C.getNotes() == None ) + self.assertTrue( self.C.getAnnotation() == None ) + self.assertTrue( self.C.getId() == "" ) + self.assertTrue( self.C.getName() == "" ) + self.assertTrue( self.C.getUnits() == "" ) + self.assertTrue( self.C.getOutside() == "" ) self.assertEqual( True, isnan(self.C.getSpatialDimensionsAsDouble()) ) self.assertEqual( True, isnan(self.C.getVolume()) ) - self.assert_( self.C.getConstant() == True ) + self.assertTrue( self.C.getConstant() == True ) self.assertEqual( False, self.C.isSetId() ) self.assertEqual( False, self.C.isSetSpatialDimensions() ) self.assertEqual( False, self.C.isSetName() ) @@ -96,21 +96,21 @@ def test_L3_Compartment_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) c = libsbml.Compartment(sbmlns) - self.assert_( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) - self.assert_( c.getMetaId() == "" ) - self.assert_( c.getNotes() == None ) - self.assert_( c.getAnnotation() == None ) - self.assert_( c.getLevel() == 3 ) - self.assert_( c.getVersion() == 1 ) - self.assert_( c.getNamespaces() != None ) - self.assert_( c.getNamespaces().getLength() == 2 ) - self.assert_( c.getId() == "" ) - self.assert_( c.getName() == "" ) - self.assert_( c.getUnits() == "" ) - self.assert_( c.getOutside() == "" ) + self.assertTrue( c.getTypeCode() == libsbml.SBML_COMPARTMENT ) + self.assertTrue( c.getMetaId() == "" ) + self.assertTrue( c.getNotes() == None ) + self.assertTrue( c.getAnnotation() == None ) + self.assertTrue( c.getLevel() == 3 ) + self.assertTrue( c.getVersion() == 1 ) + self.assertTrue( c.getNamespaces() != None ) + self.assertTrue( c.getNamespaces().getLength() == 2 ) + self.assertTrue( c.getId() == "" ) + self.assertTrue( c.getName() == "" ) + self.assertTrue( c.getUnits() == "" ) + self.assertTrue( c.getOutside() == "" ) self.assertEqual( True, isnan(c.getSpatialDimensionsAsDouble()) ) self.assertEqual( True, isnan(c.getVolume()) ) - self.assert_( c.getConstant() == True ) + self.assertTrue( c.getConstant() == True ) self.assertEqual( False, c.isSetId() ) self.assertEqual( False, c.isSetSpatialDimensions() ) self.assertEqual( False, c.isSetName() ) @@ -140,7 +140,7 @@ def test_L3_Compartment_id(self): id = "mitochondria"; self.assertEqual( False, self.C.isSetId() ) self.C.setId(id) - self.assert_(( id == self.C.getId() )) + self.assertTrue(( id == self.C.getId() )) self.assertEqual( True, self.C.isSetId() ) if (self.C.getId() == id): pass @@ -157,12 +157,12 @@ def test_L3_Compartment_initDefaults(self): self.assertEqual( False, c.isSetConstant() ) self.assertEqual( False, c.isSetSpatialDimensions() ) c.initDefaults() - self.assert_(( "A" == c.getId() )) - self.assert_( c.getName() == "" ) - self.assert_(( "litre" == c.getUnits() )) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_( c.getSize() == 1 ) - self.assert_( c.getConstant() == True ) + self.assertTrue(( "A" == c.getId() )) + self.assertTrue( c.getName() == "" ) + self.assertTrue(( "litre" == c.getUnits() )) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue( c.getSize() == 1 ) + self.assertTrue( c.getConstant() == True ) self.assertEqual( True, c.isSetId() ) self.assertEqual( False, c.isSetName() ) self.assertEqual( False, c.isSetSize() ) @@ -177,7 +177,7 @@ def test_L3_Compartment_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.C.isSetName() ) self.C.setName(name) - self.assert_(( name == self.C.getName() )) + self.assertTrue(( name == self.C.getName() )) self.assertEqual( True, self.C.isSetName() ) if (self.C.getName() == name): pass @@ -192,7 +192,7 @@ def test_L3_Compartment_size(self): self.assertEqual( False, self.C.isSetSize() ) self.assertEqual( True, isnan(self.C.getSize()) ) self.C.setSize(size) - self.assert_( self.C.getSize() == size ) + self.assertTrue( self.C.getSize() == size ) self.assertEqual( True, self.C.isSetSize() ) self.C.unsetSize() self.assertEqual( False, self.C.isSetSize() ) @@ -204,7 +204,7 @@ def test_L3_Compartment_spatialDimensions(self): self.assertEqual( True, isnan(self.C.getSpatialDimensionsAsDouble()) ) self.C.setSpatialDimensions(1.5) self.assertEqual( True, self.C.isSetSpatialDimensions() ) - self.assert_( self.C.getSpatialDimensionsAsDouble() == 1.5 ) + self.assertTrue( self.C.getSpatialDimensionsAsDouble() == 1.5 ) self.C.unsetSpatialDimensions() self.assertEqual( False, self.C.isSetSpatialDimensions() ) self.assertEqual( True, isnan(self.C.getSpatialDimensionsAsDouble()) ) @@ -214,7 +214,7 @@ def test_L3_Compartment_units(self): units = "volume"; self.assertEqual( False, self.C.isSetUnits() ) self.C.setUnits(units) - self.assert_(( units == self.C.getUnits() )) + self.assertTrue(( units == self.C.getUnits() )) self.assertEqual( True, self.C.isSetUnits() ) if (self.C.getUnits() == units): pass diff --git a/src/bindings/python/test/sbml/TestL3Event.py b/src/bindings/python/test/sbml/TestL3Event.py index d2f5b23f80..c6a6a6f1e3 100644 --- a/src/bindings/python/test/sbml/TestL3Event.py +++ b/src/bindings/python/test/sbml/TestL3Event.py @@ -50,19 +50,19 @@ def tearDown(self): pass def test_L3_Event_NS(self): - self.assert_( self.E.getNamespaces() != None ) - self.assert_( self.E.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.E.getNamespaces().getURI(0) )) + self.assertTrue( self.E.getNamespaces() != None ) + self.assertTrue( self.E.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.E.getNamespaces().getURI(0) )) pass def test_L3_Event_create(self): - self.assert_( self.E.getTypeCode() == libsbml.SBML_EVENT ) - self.assert_( self.E.getMetaId() == "" ) - self.assert_( self.E.getNotes() == None ) - self.assert_( self.E.getAnnotation() == None ) - self.assert_( self.E.getId() == "" ) - self.assert_( self.E.getName() == "" ) - self.assert_( self.E.getUseValuesFromTriggerTime() == True ) + self.assertTrue( self.E.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( self.E.getMetaId() == "" ) + self.assertTrue( self.E.getNotes() == None ) + self.assertTrue( self.E.getAnnotation() == None ) + self.assertTrue( self.E.getId() == "" ) + self.assertTrue( self.E.getName() == "" ) + self.assertTrue( self.E.getUseValuesFromTriggerTime() == True ) self.assertEqual( False, self.E.isSetId() ) self.assertEqual( False, self.E.isSetName() ) self.assertEqual( False, self.E.isSetUseValuesFromTriggerTime() ) @@ -74,17 +74,17 @@ def test_L3_Event_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) e = libsbml.Event(sbmlns) - self.assert_( e.getTypeCode() == libsbml.SBML_EVENT ) - self.assert_( e.getMetaId() == "" ) - self.assert_( e.getNotes() == None ) - self.assert_( e.getAnnotation() == None ) - self.assert_( e.getLevel() == 3 ) - self.assert_( e.getVersion() == 1 ) - self.assert_( e.getNamespaces() != None ) - self.assert_( e.getNamespaces().getLength() == 2 ) - self.assert_( e.getId() == "" ) - self.assert_( e.getName() == "" ) - self.assert_( e.getUseValuesFromTriggerTime() == True ) + self.assertTrue( e.getTypeCode() == libsbml.SBML_EVENT ) + self.assertTrue( e.getMetaId() == "" ) + self.assertTrue( e.getNotes() == None ) + self.assertTrue( e.getAnnotation() == None ) + self.assertTrue( e.getLevel() == 3 ) + self.assertTrue( e.getVersion() == 1 ) + self.assertTrue( e.getNamespaces() != None ) + self.assertTrue( e.getNamespaces().getLength() == 2 ) + self.assertTrue( e.getId() == "" ) + self.assertTrue( e.getName() == "" ) + self.assertTrue( e.getUseValuesFromTriggerTime() == True ) self.assertEqual( False, e.isSetId() ) self.assertEqual( False, e.isSetName() ) self.assertEqual( False, e.isSetUseValuesFromTriggerTime() ) @@ -119,7 +119,7 @@ def test_L3_Event_id(self): id = "mitochondria"; self.assertEqual( False, self.E.isSetId() ) self.E.setId(id) - self.assert_(( id == self.E.getId() )) + self.assertTrue(( id == self.E.getId() )) self.assertEqual( True, self.E.isSetId() ) if (self.E.getId() == id): pass @@ -133,7 +133,7 @@ def test_L3_Event_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.E.isSetName() ) self.E.setName(name) - self.assert_(( name == self.E.getName() )) + self.assertTrue(( name == self.E.getName() )) self.assertEqual( True, self.E.isSetName() ) if (self.E.getName() == name): pass @@ -149,10 +149,10 @@ def test_L3_Event_setPriority1(self): priority.setMath(math1) self.assertEqual( False, self.E.isSetPriority() ) i = self.E.setPriority(priority) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.E.isSetPriority() ) i = self.E.unsetPriority() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.E.isSetPriority() ) _dummyList = [ priority ]; _dummyList[:] = []; del _dummyList pass @@ -161,18 +161,18 @@ def test_L3_Event_setPriority2(self): priority = self.E.createPriority() self.assertEqual( True, self.E.isSetPriority() ) p = self.E.getPriority() - self.assert_( p != None ) + self.assertTrue( p != None ) self.assertEqual( False, p.isSetMath() ) pass def test_L3_Event_useValuesFromTriggerTime(self): - self.assert_( self.E.isSetUseValuesFromTriggerTime() == False ) + self.assertTrue( self.E.isSetUseValuesFromTriggerTime() == False ) self.E.setUseValuesFromTriggerTime(True) - self.assert_( self.E.getUseValuesFromTriggerTime() == True ) - self.assert_( self.E.isSetUseValuesFromTriggerTime() == True ) + self.assertTrue( self.E.getUseValuesFromTriggerTime() == True ) + self.assertTrue( self.E.isSetUseValuesFromTriggerTime() == True ) self.E.setUseValuesFromTriggerTime(False) - self.assert_( self.E.getUseValuesFromTriggerTime() == False ) - self.assert_( self.E.isSetUseValuesFromTriggerTime() == True ) + self.assertTrue( self.E.getUseValuesFromTriggerTime() == False ) + self.assertTrue( self.E.isSetUseValuesFromTriggerTime() == True ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestL3KineticLaw.py b/src/bindings/python/test/sbml/TestL3KineticLaw.py index 905006748d..4e69822026 100644 --- a/src/bindings/python/test/sbml/TestL3KineticLaw.py +++ b/src/bindings/python/test/sbml/TestL3KineticLaw.py @@ -53,20 +53,20 @@ def test_L3_KineticLaw_addParameter1(self): kl = libsbml.KineticLaw(3,1) p = libsbml.Parameter(3,1) i = self.KL.addParameter(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setId( "p") i = self.KL.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.KL.getNumParameters() == 1 ) - self.assert_( self.KL.getNumLocalParameters() == 1 ) - self.assert_( kl.getNumParameters() == 0 ) - self.assert_( kl.getNumLocalParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.KL.getNumParameters() == 1 ) + self.assertTrue( self.KL.getNumLocalParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 0 ) + self.assertTrue( kl.getNumLocalParameters() == 0 ) i = kl.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.KL.getNumParameters() == 1 ) - self.assert_( self.KL.getNumLocalParameters() == 1 ) - self.assert_( kl.getNumParameters() == 1 ) - self.assert_( kl.getNumLocalParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.KL.getNumParameters() == 1 ) + self.assertTrue( self.KL.getNumLocalParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumLocalParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ kl ]; _dummyList[:] = []; del _dummyList pass @@ -76,28 +76,28 @@ def test_L3_KineticLaw_addParameter2(self): lp = libsbml.LocalParameter(3,1) lp1 = libsbml.LocalParameter(3,1) i = kl.addLocalParameter(lp) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) lp.setId( "p") lp1.setId("p1"); i = kl.addLocalParameter(lp) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( kl.getNumParameters() == 1 ) - self.assert_( kl.getNumLocalParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumLocalParameters() == 1 ) i = kl.addParameter(lp1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( kl.getNumParameters() == 2 ) - self.assert_( kl.getNumLocalParameters() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( kl.getNumParameters() == 2 ) + self.assertTrue( kl.getNumLocalParameters() == 2 ) _dummyList = [ lp ]; _dummyList[:] = []; del _dummyList _dummyList = [ kl ]; _dummyList[:] = []; del _dummyList pass def test_L3_KineticLaw_create(self): - self.assert_( self.KL.getTypeCode() == libsbml.SBML_KINETIC_LAW ) - self.assert_( self.KL.getMetaId() == "" ) - self.assert_( self.KL.getNotes() == None ) - self.assert_( self.KL.getAnnotation() == None ) - self.assert_( self.KL.getNumParameters() == 0 ) - self.assert_( self.KL.getNumLocalParameters() == 0 ) + self.assertTrue( self.KL.getTypeCode() == libsbml.SBML_KINETIC_LAW ) + self.assertTrue( self.KL.getMetaId() == "" ) + self.assertTrue( self.KL.getNotes() == None ) + self.assertTrue( self.KL.getAnnotation() == None ) + self.assertTrue( self.KL.getNumParameters() == 0 ) + self.assertTrue( self.KL.getNumLocalParameters() == 0 ) pass def test_L3_KineticLaw_free_NULL(self): diff --git a/src/bindings/python/test/sbml/TestL3LocalParameter.py b/src/bindings/python/test/sbml/TestL3LocalParameter.py index 1f3d2599f2..191f047334 100644 --- a/src/bindings/python/test/sbml/TestL3LocalParameter.py +++ b/src/bindings/python/test/sbml/TestL3LocalParameter.py @@ -53,19 +53,19 @@ def tearDown(self): pass def test_L3_LocalParameter_NS(self): - self.assert_( self.P.getNamespaces() != None ) - self.assert_( self.P.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.P.getNamespaces().getURI(0) )) + self.assertTrue( self.P.getNamespaces() != None ) + self.assertTrue( self.P.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.P.getNamespaces().getURI(0) )) pass def test_L3_LocalParameter_create(self): - self.assert_( self.P.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) - self.assert_( self.P.getMetaId() == "" ) - self.assert_( self.P.getNotes() == None ) - self.assert_( self.P.getAnnotation() == None ) - self.assert_( self.P.getId() == "" ) - self.assert_( self.P.getName() == "" ) - self.assert_( self.P.getUnits() == "" ) + self.assertTrue( self.P.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) + self.assertTrue( self.P.getMetaId() == "" ) + self.assertTrue( self.P.getNotes() == None ) + self.assertTrue( self.P.getAnnotation() == None ) + self.assertTrue( self.P.getId() == "" ) + self.assertTrue( self.P.getName() == "" ) + self.assertTrue( self.P.getUnits() == "" ) self.assertEqual( True, isnan(self.P.getValue()) ) self.assertEqual( False, self.P.isSetId() ) self.assertEqual( False, self.P.isSetName() ) @@ -79,17 +79,17 @@ def test_L3_LocalParameter_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) p = libsbml.LocalParameter(sbmlns) - self.assert_( p.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) - self.assert_( p.getMetaId() == "" ) - self.assert_( p.getNotes() == None ) - self.assert_( p.getAnnotation() == None ) - self.assert_( p.getLevel() == 3 ) - self.assert_( p.getVersion() == 1 ) - self.assert_( p.getNamespaces() != None ) - self.assert_( p.getNamespaces().getLength() == 2 ) - self.assert_( p.getId() == "" ) - self.assert_( p.getName() == "" ) - self.assert_( p.getUnits() == "" ) + self.assertTrue( p.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) + self.assertTrue( p.getMetaId() == "" ) + self.assertTrue( p.getNotes() == None ) + self.assertTrue( p.getAnnotation() == None ) + self.assertTrue( p.getLevel() == 3 ) + self.assertTrue( p.getVersion() == 1 ) + self.assertTrue( p.getNamespaces() != None ) + self.assertTrue( p.getNamespaces().getLength() == 2 ) + self.assertTrue( p.getId() == "" ) + self.assertTrue( p.getName() == "" ) + self.assertTrue( p.getUnits() == "" ) self.assertEqual( True, isnan(p.getValue()) ) self.assertEqual( False, p.isSetId() ) self.assertEqual( False, p.isSetName() ) @@ -114,7 +114,7 @@ def test_L3_LocalParameter_id(self): id = "mitochondria"; self.assertEqual( False, self.P.isSetId() ) self.P.setId(id) - self.assert_(( id == self.P.getId() )) + self.assertTrue(( id == self.P.getId() )) self.assertEqual( True, self.P.isSetId() ) if (self.P.getId() == id): pass @@ -124,7 +124,7 @@ def test_L3_LocalParameter_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.P.isSetName() ) self.P.setName(name) - self.assert_(( name == self.P.getName() )) + self.assertTrue(( name == self.P.getName() )) self.assertEqual( True, self.P.isSetName() ) if (self.P.getName() == name): pass @@ -138,7 +138,7 @@ def test_L3_LocalParameter_units(self): units = "volume"; self.assertEqual( False, self.P.isSetUnits() ) self.P.setUnits(units) - self.assert_(( units == self.P.getUnits() )) + self.assertTrue(( units == self.P.getUnits() )) self.assertEqual( True, self.P.isSetUnits() ) if (self.P.getUnits() == units): pass @@ -153,7 +153,7 @@ def test_L3_LocalParameter_value(self): self.assertEqual( True, isnan(self.P.getValue()) ) self.P.setValue(1.5) self.assertEqual( True, self.P.isSetValue() ) - self.assert_( self.P.getValue() == 1.5 ) + self.assertTrue( self.P.getValue() == 1.5 ) self.P.unsetValue() self.assertEqual( False, self.P.isSetValue() ) self.assertEqual( True, isnan(self.P.getValue()) ) diff --git a/src/bindings/python/test/sbml/TestL3Model.py b/src/bindings/python/test/sbml/TestL3Model.py index 443233a9ce..1d67030ab1 100644 --- a/src/bindings/python/test/sbml/TestL3Model.py +++ b/src/bindings/python/test/sbml/TestL3Model.py @@ -50,16 +50,16 @@ def tearDown(self): pass def test_L3_Model_NS(self): - self.assert_( self.M.getNamespaces() != None ) - self.assert_( self.M.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.M.getNamespaces().getURI(0) )) + self.assertTrue( self.M.getNamespaces() != None ) + self.assertTrue( self.M.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.M.getNamespaces().getURI(0) )) pass def test_L3_Model_areaUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetAreaUnits() ) self.M.setAreaUnits(units) - self.assert_(( units == self.M.getAreaUnits() )) + self.assertTrue(( units == self.M.getAreaUnits() )) self.assertEqual( True, self.M.isSetAreaUnits() ) if (self.M.getAreaUnits() == units): pass @@ -73,7 +73,7 @@ def test_L3_Model_conversionFactor(self): units = "mole"; self.assertEqual( False, self.M.isSetConversionFactor() ) self.M.setConversionFactor(units) - self.assert_(( units == self.M.getConversionFactor() )) + self.assertTrue(( units == self.M.getConversionFactor() )) self.assertEqual( True, self.M.isSetConversionFactor() ) if (self.M.getConversionFactor() == units): pass @@ -84,18 +84,18 @@ def test_L3_Model_conversionFactor(self): pass def test_L3_Model_create(self): - self.assert_( self.M.getTypeCode() == libsbml.SBML_MODEL ) - self.assert_( self.M.getMetaId() == "" ) - self.assert_( self.M.getNotes() == None ) - self.assert_( self.M.getAnnotation() == None ) - self.assert_( self.M.getId() == "" ) - self.assert_( self.M.getName() == "" ) - self.assert_( self.M.getSubstanceUnits() == "" ) - self.assert_( self.M.getTimeUnits() == "" ) - self.assert_( self.M.getVolumeUnits() == "" ) - self.assert_( self.M.getAreaUnits() == "" ) - self.assert_( self.M.getLengthUnits() == "" ) - self.assert_( self.M.getConversionFactor() == "" ) + self.assertTrue( self.M.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( self.M.getMetaId() == "" ) + self.assertTrue( self.M.getNotes() == None ) + self.assertTrue( self.M.getAnnotation() == None ) + self.assertTrue( self.M.getId() == "" ) + self.assertTrue( self.M.getName() == "" ) + self.assertTrue( self.M.getSubstanceUnits() == "" ) + self.assertTrue( self.M.getTimeUnits() == "" ) + self.assertTrue( self.M.getVolumeUnits() == "" ) + self.assertTrue( self.M.getAreaUnits() == "" ) + self.assertTrue( self.M.getLengthUnits() == "" ) + self.assertTrue( self.M.getConversionFactor() == "" ) self.assertEqual( False, self.M.isSetId() ) self.assertEqual( False, self.M.isSetName() ) self.assertEqual( False, self.M.isSetSubstanceUnits() ) @@ -112,22 +112,22 @@ def test_L3_Model_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) m = libsbml.Model(sbmlns) - self.assert_( m.getTypeCode() == libsbml.SBML_MODEL ) - self.assert_( m.getMetaId() == "" ) - self.assert_( m.getNotes() == None ) - self.assert_( m.getAnnotation() == None ) - self.assert_( m.getLevel() == 3 ) - self.assert_( m.getVersion() == 1 ) - self.assert_( m.getNamespaces() != None ) - self.assert_( m.getNamespaces().getLength() == 2 ) - self.assert_( m.getId() == "" ) - self.assert_( m.getName() == "" ) - self.assert_( m.getSubstanceUnits() == "" ) - self.assert_( m.getTimeUnits() == "" ) - self.assert_( m.getVolumeUnits() == "" ) - self.assert_( m.getAreaUnits() == "" ) - self.assert_( m.getLengthUnits() == "" ) - self.assert_( m.getConversionFactor() == "" ) + self.assertTrue( m.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( m.getMetaId() == "" ) + self.assertTrue( m.getNotes() == None ) + self.assertTrue( m.getAnnotation() == None ) + self.assertTrue( m.getLevel() == 3 ) + self.assertTrue( m.getVersion() == 1 ) + self.assertTrue( m.getNamespaces() != None ) + self.assertTrue( m.getNamespaces().getLength() == 2 ) + self.assertTrue( m.getId() == "" ) + self.assertTrue( m.getName() == "" ) + self.assertTrue( m.getSubstanceUnits() == "" ) + self.assertTrue( m.getTimeUnits() == "" ) + self.assertTrue( m.getVolumeUnits() == "" ) + self.assertTrue( m.getAreaUnits() == "" ) + self.assertTrue( m.getLengthUnits() == "" ) + self.assertTrue( m.getConversionFactor() == "" ) self.assertEqual( False, m.isSetId() ) self.assertEqual( False, m.isSetName() ) self.assertEqual( False, m.isSetSubstanceUnits() ) @@ -143,7 +143,7 @@ def test_L3_Model_extentUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetExtentUnits() ) self.M.setExtentUnits(units) - self.assert_(( units == self.M.getExtentUnits() )) + self.assertTrue(( units == self.M.getExtentUnits() )) self.assertEqual( True, self.M.isSetExtentUnits() ) if (self.M.getExtentUnits() == units): pass @@ -161,7 +161,7 @@ def test_L3_Model_id(self): id = "mitochondria"; self.assertEqual( False, self.M.isSetId() ) self.M.setId(id) - self.assert_(( id == self.M.getId() )) + self.assertTrue(( id == self.M.getId() )) self.assertEqual( True, self.M.isSetId() ) if (self.M.getId() == id): pass @@ -175,7 +175,7 @@ def test_L3_Model_lengthUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetLengthUnits() ) self.M.setLengthUnits(units) - self.assert_(( units == self.M.getLengthUnits() )) + self.assertTrue(( units == self.M.getLengthUnits() )) self.assertEqual( True, self.M.isSetLengthUnits() ) if (self.M.getLengthUnits() == units): pass @@ -189,7 +189,7 @@ def test_L3_Model_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.M.isSetName() ) self.M.setName(name) - self.assert_(( name == self.M.getName() )) + self.assertTrue(( name == self.M.getName() )) self.assertEqual( True, self.M.isSetName() ) if (self.M.getName() == name): pass @@ -203,7 +203,7 @@ def test_L3_Model_substanceUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetSubstanceUnits() ) self.M.setSubstanceUnits(units) - self.assert_(( units == self.M.getSubstanceUnits() )) + self.assertTrue(( units == self.M.getSubstanceUnits() )) self.assertEqual( True, self.M.isSetSubstanceUnits() ) if (self.M.getSubstanceUnits() == units): pass @@ -217,7 +217,7 @@ def test_L3_Model_timeUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetTimeUnits() ) self.M.setTimeUnits(units) - self.assert_(( units == self.M.getTimeUnits() )) + self.assertTrue(( units == self.M.getTimeUnits() )) self.assertEqual( True, self.M.isSetTimeUnits() ) if (self.M.getTimeUnits() == units): pass @@ -231,7 +231,7 @@ def test_L3_Model_volumeUnits(self): units = "mole"; self.assertEqual( False, self.M.isSetVolumeUnits() ) self.M.setVolumeUnits(units) - self.assert_(( units == self.M.getVolumeUnits() )) + self.assertTrue(( units == self.M.getVolumeUnits() )) self.assertEqual( True, self.M.isSetVolumeUnits() ) if (self.M.getVolumeUnits() == units): pass diff --git a/src/bindings/python/test/sbml/TestL3Parameter.py b/src/bindings/python/test/sbml/TestL3Parameter.py index ab3e37d6f1..3bb7842a80 100644 --- a/src/bindings/python/test/sbml/TestL3Parameter.py +++ b/src/bindings/python/test/sbml/TestL3Parameter.py @@ -53,31 +53,31 @@ def tearDown(self): pass def test_L3_Parameter_NS(self): - self.assert_( self.P.getNamespaces() != None ) - self.assert_( self.P.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.P.getNamespaces().getURI(0) )) + self.assertTrue( self.P.getNamespaces() != None ) + self.assertTrue( self.P.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.P.getNamespaces().getURI(0) )) pass def test_L3_Parameter_constant(self): - self.assert_( self.P.isSetConstant() == False ) + self.assertTrue( self.P.isSetConstant() == False ) self.P.setConstant(True) - self.assert_( self.P.getConstant() == True ) - self.assert_( self.P.isSetConstant() == True ) + self.assertTrue( self.P.getConstant() == True ) + self.assertTrue( self.P.isSetConstant() == True ) self.P.setConstant(False) - self.assert_( self.P.getConstant() == False ) - self.assert_( self.P.isSetConstant() == True ) + self.assertTrue( self.P.getConstant() == False ) + self.assertTrue( self.P.isSetConstant() == True ) pass def test_L3_Parameter_create(self): - self.assert_( self.P.getTypeCode() == libsbml.SBML_PARAMETER ) - self.assert_( self.P.getMetaId() == "" ) - self.assert_( self.P.getNotes() == None ) - self.assert_( self.P.getAnnotation() == None ) - self.assert_( self.P.getId() == "" ) - self.assert_( self.P.getName() == "" ) - self.assert_( self.P.getUnits() == "" ) + self.assertTrue( self.P.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( self.P.getMetaId() == "" ) + self.assertTrue( self.P.getNotes() == None ) + self.assertTrue( self.P.getAnnotation() == None ) + self.assertTrue( self.P.getId() == "" ) + self.assertTrue( self.P.getName() == "" ) + self.assertTrue( self.P.getUnits() == "" ) self.assertEqual( True, isnan(self.P.getValue()) ) - self.assert_( self.P.getConstant() == True ) + self.assertTrue( self.P.getConstant() == True ) self.assertEqual( False, self.P.isSetId() ) self.assertEqual( False, self.P.isSetName() ) self.assertEqual( False, self.P.isSetValue() ) @@ -91,19 +91,19 @@ def test_L3_Parameter_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) p = libsbml.Parameter(sbmlns) - self.assert_( p.getTypeCode() == libsbml.SBML_PARAMETER ) - self.assert_( p.getMetaId() == "" ) - self.assert_( p.getNotes() == None ) - self.assert_( p.getAnnotation() == None ) - self.assert_( p.getLevel() == 3 ) - self.assert_( p.getVersion() == 1 ) - self.assert_( p.getNamespaces() != None ) - self.assert_( p.getNamespaces().getLength() == 2 ) - self.assert_( p.getId() == "" ) - self.assert_( p.getName() == "" ) - self.assert_( p.getUnits() == "" ) + self.assertTrue( p.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( p.getMetaId() == "" ) + self.assertTrue( p.getNotes() == None ) + self.assertTrue( p.getAnnotation() == None ) + self.assertTrue( p.getLevel() == 3 ) + self.assertTrue( p.getVersion() == 1 ) + self.assertTrue( p.getNamespaces() != None ) + self.assertTrue( p.getNamespaces().getLength() == 2 ) + self.assertTrue( p.getId() == "" ) + self.assertTrue( p.getName() == "" ) + self.assertTrue( p.getUnits() == "" ) self.assertEqual( True, isnan(p.getValue()) ) - self.assert_( p.getConstant() == True ) + self.assertTrue( p.getConstant() == True ) self.assertEqual( False, p.isSetId() ) self.assertEqual( False, p.isSetName() ) self.assertEqual( False, p.isSetValue() ) @@ -130,7 +130,7 @@ def test_L3_Parameter_id(self): id = "mitochondria"; self.assertEqual( False, self.P.isSetId() ) self.P.setId(id) - self.assert_(( id == self.P.getId() )) + self.assertTrue(( id == self.P.getId() )) self.assertEqual( True, self.P.isSetId() ) if (self.P.getId() == id): pass @@ -140,7 +140,7 @@ def test_L3_Parameter_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.P.isSetName() ) self.P.setName(name) - self.assert_(( name == self.P.getName() )) + self.assertTrue(( name == self.P.getName() )) self.assertEqual( True, self.P.isSetName() ) if (self.P.getName() == name): pass @@ -154,7 +154,7 @@ def test_L3_Parameter_units(self): units = "volume"; self.assertEqual( False, self.P.isSetUnits() ) self.P.setUnits(units) - self.assert_(( units == self.P.getUnits() )) + self.assertTrue(( units == self.P.getUnits() )) self.assertEqual( True, self.P.isSetUnits() ) if (self.P.getUnits() == units): pass @@ -169,7 +169,7 @@ def test_L3_Parameter_value(self): self.assertEqual( True, isnan(self.P.getValue()) ) self.P.setValue(1.5) self.assertEqual( True, self.P.isSetValue() ) - self.assert_( self.P.getValue() == 1.5 ) + self.assertTrue( self.P.getValue() == 1.5 ) self.P.unsetValue() self.assertEqual( False, self.P.isSetValue() ) self.assertEqual( True, isnan(self.P.getValue()) ) diff --git a/src/bindings/python/test/sbml/TestL3Reaction.py b/src/bindings/python/test/sbml/TestL3Reaction.py index c8c49300d9..75e7514e02 100644 --- a/src/bindings/python/test/sbml/TestL3Reaction.py +++ b/src/bindings/python/test/sbml/TestL3Reaction.py @@ -50,16 +50,16 @@ def tearDown(self): pass def test_L3_Reaction_NS(self): - self.assert_( self.R.getNamespaces() != None ) - self.assert_( self.R.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.R.getNamespaces().getURI(0) )) + self.assertTrue( self.R.getNamespaces() != None ) + self.assertTrue( self.R.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.R.getNamespaces().getURI(0) )) pass def test_L3_Reaction_compartment(self): compartment = "cell"; self.assertEqual( False, self.R.isSetCompartment() ) self.R.setCompartment(compartment) - self.assert_(( compartment == self.R.getCompartment() )) + self.assertTrue(( compartment == self.R.getCompartment() )) self.assertEqual( True, self.R.isSetCompartment() ) if (self.R.getCompartment() == compartment): pass @@ -70,15 +70,15 @@ def test_L3_Reaction_compartment(self): pass def test_L3_Reaction_create(self): - self.assert_( self.R.getTypeCode() == libsbml.SBML_REACTION ) - self.assert_( self.R.getMetaId() == "" ) - self.assert_( self.R.getNotes() == None ) - self.assert_( self.R.getAnnotation() == None ) - self.assert_( self.R.getId() == "" ) - self.assert_( self.R.getName() == "" ) - self.assert_( self.R.getCompartment() == "" ) - self.assert_( self.R.getFast() == False ) - self.assert_( self.R.getReversible() == True ) + self.assertTrue( self.R.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( self.R.getMetaId() == "" ) + self.assertTrue( self.R.getNotes() == None ) + self.assertTrue( self.R.getAnnotation() == None ) + self.assertTrue( self.R.getId() == "" ) + self.assertTrue( self.R.getName() == "" ) + self.assertTrue( self.R.getCompartment() == "" ) + self.assertTrue( self.R.getFast() == False ) + self.assertTrue( self.R.getReversible() == True ) self.assertEqual( False, self.R.isSetId() ) self.assertEqual( False, self.R.isSetName() ) self.assertEqual( False, self.R.isSetCompartment() ) @@ -92,19 +92,19 @@ def test_L3_Reaction_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) r = libsbml.Reaction(sbmlns) - self.assert_( r.getTypeCode() == libsbml.SBML_REACTION ) - self.assert_( r.getMetaId() == "" ) - self.assert_( r.getNotes() == None ) - self.assert_( r.getAnnotation() == None ) - self.assert_( r.getLevel() == 3 ) - self.assert_( r.getVersion() == 1 ) - self.assert_( r.getNamespaces() != None ) - self.assert_( r.getNamespaces().getLength() == 2 ) - self.assert_( r.getId() == "" ) - self.assert_( r.getName() == "" ) - self.assert_( r.getCompartment() == "" ) - self.assert_( r.getFast() == False ) - self.assert_( r.getReversible() == True ) + self.assertTrue( r.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( r.getMetaId() == "" ) + self.assertTrue( r.getNotes() == None ) + self.assertTrue( r.getAnnotation() == None ) + self.assertTrue( r.getLevel() == 3 ) + self.assertTrue( r.getVersion() == 1 ) + self.assertTrue( r.getNamespaces() != None ) + self.assertTrue( r.getNamespaces().getLength() == 2 ) + self.assertTrue( r.getId() == "" ) + self.assertTrue( r.getName() == "" ) + self.assertTrue( r.getCompartment() == "" ) + self.assertTrue( r.getFast() == False ) + self.assertTrue( r.getReversible() == True ) self.assertEqual( False, r.isSetId() ) self.assertEqual( False, r.isSetName() ) self.assertEqual( False, r.isSetCompartment() ) @@ -114,13 +114,13 @@ def test_L3_Reaction_createWithNS(self): pass def test_L3_Reaction_fast(self): - self.assert_( self.R.isSetFast() == False ) + self.assertTrue( self.R.isSetFast() == False ) self.R.setFast(True) - self.assert_( self.R.getFast() == True ) - self.assert_( self.R.isSetFast() == True ) + self.assertTrue( self.R.getFast() == True ) + self.assertTrue( self.R.isSetFast() == True ) self.R.setFast(False) - self.assert_( self.R.getFast() == False ) - self.assert_( self.R.isSetFast() == True ) + self.assertTrue( self.R.getFast() == False ) + self.assertTrue( self.R.isSetFast() == True ) pass def test_L3_Reaction_free_NULL(self): @@ -143,7 +143,7 @@ def test_L3_Reaction_id(self): id = "mitochondria"; self.assertEqual( False, self.R.isSetId() ) self.R.setId(id) - self.assert_(( id == self.R.getId() )) + self.assertTrue(( id == self.R.getId() )) self.assertEqual( True, self.R.isSetId() ) if (self.R.getId() == id): pass @@ -153,7 +153,7 @@ def test_L3_Reaction_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.R.isSetName() ) self.R.setName(name) - self.assert_(( name == self.R.getName() )) + self.assertTrue(( name == self.R.getName() )) self.assertEqual( True, self.R.isSetName() ) if (self.R.getName() == name): pass @@ -164,13 +164,13 @@ def test_L3_Reaction_name(self): pass def test_L3_Reaction_reversible(self): - self.assert_( self.R.isSetReversible() == False ) + self.assertTrue( self.R.isSetReversible() == False ) self.R.setReversible(True) - self.assert_( self.R.getReversible() == True ) - self.assert_( self.R.isSetReversible() == True ) + self.assertTrue( self.R.getReversible() == True ) + self.assertTrue( self.R.isSetReversible() == True ) self.R.setReversible(False) - self.assert_( self.R.getReversible() == False ) - self.assert_( self.R.isSetReversible() == True ) + self.assertTrue( self.R.getReversible() == False ) + self.assertTrue( self.R.isSetReversible() == True ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestL3Species.py b/src/bindings/python/test/sbml/TestL3Species.py index 1d880fce23..5aeb672804 100644 --- a/src/bindings/python/test/sbml/TestL3Species.py +++ b/src/bindings/python/test/sbml/TestL3Species.py @@ -56,7 +56,7 @@ def test_L3_Species_ModelHistory(self): (self.S).setMetaId("_3") history = libsbml.ModelHistory() i = (self.S).setModelHistory(history) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, (self.S).isSetModelHistory() ) mc = libsbml.ModelCreator() date = libsbml.Date(2005,12,30,12,15,45,1,2,0) @@ -68,56 +68,56 @@ def test_L3_Species_ModelHistory(self): history.setCreatedDate(date) history.setModifiedDate(date) i = (self.S).setModelHistory(history) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, (self.S).isSetModelHistory() ) i = (self.S).unsetModelHistory() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, (self.S).isSetModelHistory() ) - self.assert_( (self.S).getModelHistory() == None ) + self.assertTrue( (self.S).getModelHistory() == None ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_NS(self): - self.assert_( self.S.getNamespaces() != None ) - self.assert_( self.S.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.S.getNamespaces().getURI(0) )) + self.assertTrue( self.S.getNamespaces() != None ) + self.assertTrue( self.S.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.S.getNamespaces().getURI(0) )) pass def test_L3_Species_boundaryCondition(self): - self.assert_( self.S.isSetBoundaryCondition() == False ) + self.assertTrue( self.S.isSetBoundaryCondition() == False ) self.S.setBoundaryCondition(True) - self.assert_( self.S.getBoundaryCondition() == True ) - self.assert_( self.S.isSetBoundaryCondition() == True ) + self.assertTrue( self.S.getBoundaryCondition() == True ) + self.assertTrue( self.S.isSetBoundaryCondition() == True ) self.S.setBoundaryCondition(False) - self.assert_( self.S.getBoundaryCondition() == False ) - self.assert_( self.S.isSetBoundaryCondition() == True ) + self.assertTrue( self.S.getBoundaryCondition() == False ) + self.assertTrue( self.S.isSetBoundaryCondition() == True ) pass def test_L3_Species_compartment(self): compartment = "cell"; self.assertEqual( False, self.S.isSetCompartment() ) self.S.setCompartment(compartment) - self.assert_(( compartment == self.S.getCompartment() )) + self.assertTrue(( compartment == self.S.getCompartment() )) self.assertEqual( True, self.S.isSetCompartment() ) if (self.S.getCompartment() == compartment): pass pass def test_L3_Species_constant(self): - self.assert_( self.S.isSetConstant() == False ) + self.assertTrue( self.S.isSetConstant() == False ) self.S.setConstant(True) - self.assert_( self.S.getConstant() == True ) - self.assert_( self.S.isSetConstant() == True ) + self.assertTrue( self.S.getConstant() == True ) + self.assertTrue( self.S.isSetConstant() == True ) self.S.setConstant(False) - self.assert_( self.S.getConstant() == False ) - self.assert_( self.S.isSetConstant() == True ) + self.assertTrue( self.S.getConstant() == False ) + self.assertTrue( self.S.isSetConstant() == True ) pass def test_L3_Species_conversionFactor(self): units = "volume"; self.assertEqual( False, self.S.isSetConversionFactor() ) self.S.setConversionFactor(units) - self.assert_(( units == self.S.getConversionFactor() )) + self.assertTrue(( units == self.S.getConversionFactor() )) self.assertEqual( True, self.S.isSetConversionFactor() ) if (self.S.getConversionFactor() == units): pass @@ -128,20 +128,20 @@ def test_L3_Species_conversionFactor(self): pass def test_L3_Species_create(self): - self.assert_( self.S.getTypeCode() == libsbml.SBML_SPECIES ) - self.assert_( self.S.getMetaId() == "" ) - self.assert_( self.S.getNotes() == None ) - self.assert_( self.S.getAnnotation() == None ) - self.assert_( self.S.getId() == "" ) - self.assert_( self.S.getName() == "" ) - self.assert_( self.S.getCompartment() == "" ) + self.assertTrue( self.S.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( self.S.getMetaId() == "" ) + self.assertTrue( self.S.getNotes() == None ) + self.assertTrue( self.S.getAnnotation() == None ) + self.assertTrue( self.S.getId() == "" ) + self.assertTrue( self.S.getName() == "" ) + self.assertTrue( self.S.getCompartment() == "" ) self.assertEqual( True, isnan(self.S.getInitialAmount()) ) self.assertEqual( True, isnan(self.S.getInitialConcentration()) ) - self.assert_( self.S.getSubstanceUnits() == "" ) - self.assert_( self.S.getHasOnlySubstanceUnits() == False ) - self.assert_( self.S.getBoundaryCondition() == False ) - self.assert_( self.S.getConstant() == False ) - self.assert_( self.S.getConversionFactor() == "" ) + self.assertTrue( self.S.getSubstanceUnits() == "" ) + self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) + self.assertTrue( self.S.getBoundaryCondition() == False ) + self.assertTrue( self.S.getConstant() == False ) + self.assertTrue( self.S.getConversionFactor() == "" ) self.assertEqual( False, self.S.isSetId() ) self.assertEqual( False, self.S.isSetName() ) self.assertEqual( False, self.S.isSetCompartment() ) @@ -160,24 +160,24 @@ def test_L3_Species_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) s = libsbml.Species(sbmlns) - self.assert_( s.getTypeCode() == libsbml.SBML_SPECIES ) - self.assert_( s.getMetaId() == "" ) - self.assert_( s.getNotes() == None ) - self.assert_( s.getAnnotation() == None ) - self.assert_( s.getLevel() == 3 ) - self.assert_( s.getVersion() == 1 ) - self.assert_( s.getNamespaces() != None ) - self.assert_( s.getNamespaces().getLength() == 2 ) - self.assert_( s.getId() == "" ) - self.assert_( s.getName() == "" ) - self.assert_( s.getCompartment() == "" ) + self.assertTrue( s.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( s.getMetaId() == "" ) + self.assertTrue( s.getNotes() == None ) + self.assertTrue( s.getAnnotation() == None ) + self.assertTrue( s.getLevel() == 3 ) + self.assertTrue( s.getVersion() == 1 ) + self.assertTrue( s.getNamespaces() != None ) + self.assertTrue( s.getNamespaces().getLength() == 2 ) + self.assertTrue( s.getId() == "" ) + self.assertTrue( s.getName() == "" ) + self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) - self.assert_( s.getSubstanceUnits() == "" ) - self.assert_( s.getHasOnlySubstanceUnits() == False ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( s.getConstant() == False ) - self.assert_( s.getConversionFactor() == "" ) + self.assertTrue( s.getSubstanceUnits() == "" ) + self.assertTrue( s.getHasOnlySubstanceUnits() == False ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( s.getConstant() == False ) + self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) @@ -196,13 +196,13 @@ def test_L3_Species_free_NULL(self): pass def test_L3_Species_hasOnlySubstanceUnits(self): - self.assert_( self.S.isSetHasOnlySubstanceUnits() == False ) + self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == False ) self.S.setHasOnlySubstanceUnits(True) - self.assert_( self.S.getHasOnlySubstanceUnits() == True ) - self.assert_( self.S.isSetHasOnlySubstanceUnits() == True ) + self.assertTrue( self.S.getHasOnlySubstanceUnits() == True ) + self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == True ) self.S.setHasOnlySubstanceUnits(False) - self.assert_( self.S.getHasOnlySubstanceUnits() == False ) - self.assert_( self.S.isSetHasOnlySubstanceUnits() == True ) + self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) + self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == True ) pass def test_L3_Species_hasRequiredAttributes(self): @@ -225,7 +225,7 @@ def test_L3_Species_id(self): id = "mitochondria"; self.assertEqual( False, self.S.isSetId() ) self.S.setId(id) - self.assert_(( id == self.S.getId() )) + self.assertTrue(( id == self.S.getId() )) self.assertEqual( True, self.S.isSetId() ) if (self.S.getId() == id): pass @@ -233,16 +233,16 @@ def test_L3_Species_id(self): def test_L3_Species_initDefaults(self): s = libsbml.Species(3,1) - self.assert_( s.getId() == "" ) - self.assert_( s.getName() == "" ) - self.assert_( s.getCompartment() == "" ) + self.assertTrue( s.getId() == "" ) + self.assertTrue( s.getName() == "" ) + self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) - self.assert_( s.getSubstanceUnits() == "" ) - self.assert_( s.getHasOnlySubstanceUnits() == False ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( s.getConstant() == False ) - self.assert_( s.getConversionFactor() == "" ) + self.assertTrue( s.getSubstanceUnits() == "" ) + self.assertTrue( s.getHasOnlySubstanceUnits() == False ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( s.getConstant() == False ) + self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) @@ -254,16 +254,16 @@ def test_L3_Species_initDefaults(self): self.assertEqual( False, s.isSetConstant() ) self.assertEqual( False, s.isSetConversionFactor() ) s.initDefaults() - self.assert_( s.getId() == "" ) - self.assert_( s.getName() == "" ) - self.assert_( s.getCompartment() == "" ) + self.assertTrue( s.getId() == "" ) + self.assertTrue( s.getName() == "" ) + self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) - self.assert_(( "mole" == s.getSubstanceUnits() )) - self.assert_( s.getHasOnlySubstanceUnits() == False ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( s.getConstant() == False ) - self.assert_( s.getConversionFactor() == "" ) + self.assertTrue(( "mole" == s.getSubstanceUnits() )) + self.assertTrue( s.getHasOnlySubstanceUnits() == False ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( s.getConstant() == False ) + self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) @@ -282,7 +282,7 @@ def test_L3_Species_initialAmount(self): self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( True, isnan(self.S.getInitialAmount()) ) self.S.setInitialAmount(initialAmount) - self.assert_( self.S.getInitialAmount() == initialAmount ) + self.assertTrue( self.S.getInitialAmount() == initialAmount ) self.assertEqual( True, self.S.isSetInitialAmount() ) self.S.unsetInitialAmount() self.assertEqual( False, self.S.isSetInitialAmount() ) @@ -294,7 +294,7 @@ def test_L3_Species_initialConcentration(self): self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertEqual( True, isnan(self.S.getInitialConcentration()) ) self.S.setInitialConcentration(initialConcentration) - self.assert_( self.S.getInitialConcentration() == initialConcentration ) + self.assertTrue( self.S.getInitialConcentration() == initialConcentration ) self.assertEqual( True, self.S.isSetInitialConcentration() ) self.S.unsetInitialConcentration() self.assertEqual( False, self.S.isSetInitialConcentration() ) @@ -305,7 +305,7 @@ def test_L3_Species_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.S.isSetName() ) self.S.setName(name) - self.assert_(( name == self.S.getName() )) + self.assertTrue(( name == self.S.getName() )) self.assertEqual( True, self.S.isSetName() ) if (self.S.getName() == name): pass @@ -319,7 +319,7 @@ def test_L3_Species_substanceUnits(self): units = "volume"; self.assertEqual( False, self.S.isSetSubstanceUnits() ) self.S.setSubstanceUnits(units) - self.assert_(( units == self.S.getSubstanceUnits() )) + self.assertTrue(( units == self.S.getSubstanceUnits() )) self.assertEqual( True, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() == units): pass diff --git a/src/bindings/python/test/sbml/TestL3SpeciesReference.py b/src/bindings/python/test/sbml/TestL3SpeciesReference.py index 40c31b5e81..a2a6eef444 100644 --- a/src/bindings/python/test/sbml/TestL3SpeciesReference.py +++ b/src/bindings/python/test/sbml/TestL3SpeciesReference.py @@ -53,31 +53,31 @@ def tearDown(self): pass def test_L3_SpeciesReference_NS(self): - self.assert_( self.SR.getNamespaces() != None ) - self.assert_( self.SR.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.SR.getNamespaces().getURI(0) )) + self.assertTrue( self.SR.getNamespaces() != None ) + self.assertTrue( self.SR.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.SR.getNamespaces().getURI(0) )) pass def test_L3_SpeciesReference_constant(self): - self.assert_( self.SR.isSetConstant() == False ) + self.assertTrue( self.SR.isSetConstant() == False ) self.SR.setConstant(True) - self.assert_( self.SR.getConstant() == True ) - self.assert_( self.SR.isSetConstant() == True ) + self.assertTrue( self.SR.getConstant() == True ) + self.assertTrue( self.SR.isSetConstant() == True ) self.SR.setConstant(False) - self.assert_( self.SR.getConstant() == False ) - self.assert_( self.SR.isSetConstant() == True ) + self.assertTrue( self.SR.getConstant() == False ) + self.assertTrue( self.SR.isSetConstant() == True ) pass def test_L3_SpeciesReference_create(self): - self.assert_( self.SR.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) - self.assert_( self.SR.getMetaId() == "" ) - self.assert_( self.SR.getNotes() == None ) - self.assert_( self.SR.getAnnotation() == None ) - self.assert_( self.SR.getId() == "" ) - self.assert_( self.SR.getName() == "" ) - self.assert_( self.SR.getSpecies() == "" ) + self.assertTrue( self.SR.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( self.SR.getMetaId() == "" ) + self.assertTrue( self.SR.getNotes() == None ) + self.assertTrue( self.SR.getAnnotation() == None ) + self.assertTrue( self.SR.getId() == "" ) + self.assertTrue( self.SR.getName() == "" ) + self.assertTrue( self.SR.getSpecies() == "" ) self.assertEqual( True, isnan(self.SR.getStoichiometry()) ) - self.assert_( self.SR.getConstant() == False ) + self.assertTrue( self.SR.getConstant() == False ) self.assertEqual( False, self.SR.isSetId() ) self.assertEqual( False, self.SR.isSetName() ) self.assertEqual( False, self.SR.isSetSpecies() ) @@ -91,19 +91,19 @@ def test_L3_SpeciesReference_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) sr = libsbml.SpeciesReference(sbmlns) - self.assert_( sr.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) - self.assert_( sr.getMetaId() == "" ) - self.assert_( sr.getNotes() == None ) - self.assert_( sr.getAnnotation() == None ) - self.assert_( sr.getLevel() == 3 ) - self.assert_( sr.getVersion() == 1 ) - self.assert_( sr.getNamespaces() != None ) - self.assert_( sr.getNamespaces().getLength() == 2 ) - self.assert_( sr.getId() == "" ) - self.assert_( sr.getName() == "" ) - self.assert_( sr.getSpecies() == "" ) + self.assertTrue( sr.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( sr.getMetaId() == "" ) + self.assertTrue( sr.getNotes() == None ) + self.assertTrue( sr.getAnnotation() == None ) + self.assertTrue( sr.getLevel() == 3 ) + self.assertTrue( sr.getVersion() == 1 ) + self.assertTrue( sr.getNamespaces() != None ) + self.assertTrue( sr.getNamespaces().getLength() == 2 ) + self.assertTrue( sr.getId() == "" ) + self.assertTrue( sr.getName() == "" ) + self.assertTrue( sr.getSpecies() == "" ) self.assertEqual( True, isnan(sr.getStoichiometry()) ) - self.assert_( sr.getConstant() == False ) + self.assertTrue( sr.getConstant() == False ) self.assertEqual( False, sr.isSetId() ) self.assertEqual( False, sr.isSetName() ) self.assertEqual( False, sr.isSetSpecies() ) @@ -130,7 +130,7 @@ def test_L3_SpeciesReference_id(self): id = "mitochondria"; self.assertEqual( False, self.SR.isSetId() ) self.SR.setId(id) - self.assert_(( id == self.SR.getId() )) + self.assertTrue(( id == self.SR.getId() )) self.assertEqual( True, self.SR.isSetId() ) if (self.SR.getId() == id): pass @@ -140,7 +140,7 @@ def test_L3_SpeciesReference_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.SR.isSetName() ) self.SR.setName(name) - self.assert_(( name == self.SR.getName() )) + self.assertTrue(( name == self.SR.getName() )) self.assertEqual( True, self.SR.isSetName() ) if (self.SR.getName() == name): pass @@ -154,7 +154,7 @@ def test_L3_SpeciesReference_species(self): species = "cell"; self.assertEqual( False, self.SR.isSetSpecies() ) self.SR.setSpecies(species) - self.assert_(( species == self.SR.getSpecies() )) + self.assertTrue(( species == self.SR.getSpecies() )) self.assertEqual( True, self.SR.isSetSpecies() ) if (self.SR.getSpecies() == species): pass @@ -165,7 +165,7 @@ def test_L3_SpeciesReference_stoichiometry(self): self.assertEqual( False, self.SR.isSetStoichiometry() ) self.assertEqual( True, isnan(self.SR.getStoichiometry()) ) self.SR.setStoichiometry(stoichiometry) - self.assert_( self.SR.getStoichiometry() == stoichiometry ) + self.assertTrue( self.SR.getStoichiometry() == stoichiometry ) self.assertEqual( True, self.SR.isSetStoichiometry() ) self.SR.unsetStoichiometry() self.assertEqual( False, self.SR.isSetStoichiometry() ) diff --git a/src/bindings/python/test/sbml/TestL3Trigger.py b/src/bindings/python/test/sbml/TestL3Trigger.py index 18e0cfe9c3..2f48750c56 100644 --- a/src/bindings/python/test/sbml/TestL3Trigger.py +++ b/src/bindings/python/test/sbml/TestL3Trigger.py @@ -50,54 +50,54 @@ def tearDown(self): pass def test_L3Trigger_create(self): - self.assert_( self.T.getTypeCode() == libsbml.SBML_TRIGGER ) - self.assert_( self.T.getMetaId() == "" ) - self.assert_( self.T.getNotes() == None ) - self.assert_( self.T.getAnnotation() == None ) - self.assert_( self.T.getMath() == None ) - self.assert_( self.T.getInitialValue() == True ) - self.assert_( self.T.getPersistent() == True ) - self.assert_( self.T.isSetInitialValue() == False ) - self.assert_( self.T.isSetPersistent() == False ) + self.assertTrue( self.T.getTypeCode() == libsbml.SBML_TRIGGER ) + self.assertTrue( self.T.getMetaId() == "" ) + self.assertTrue( self.T.getNotes() == None ) + self.assertTrue( self.T.getAnnotation() == None ) + self.assertTrue( self.T.getMath() == None ) + self.assertTrue( self.T.getInitialValue() == True ) + self.assertTrue( self.T.getPersistent() == True ) + self.assertTrue( self.T.isSetInitialValue() == False ) + self.assertTrue( self.T.isSetPersistent() == False ) pass def test_L3Trigger_setInitialValue(self): i = self.T.setInitialValue(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.T.getInitialValue() == False ) - self.assert_( self.T.isSetInitialValue() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.T.getInitialValue() == False ) + self.assertTrue( self.T.isSetInitialValue() == True ) i = self.T.setInitialValue(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.T.getInitialValue() == True ) - self.assert_( self.T.isSetInitialValue() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.T.getInitialValue() == True ) + self.assertTrue( self.T.isSetInitialValue() == True ) pass def test_L3Trigger_setInitialValue1(self): t = libsbml.Trigger(2,4) i = t.setInitialValue(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.T.getInitialValue() == True ) - self.assert_( self.T.isSetInitialValue() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.T.getInitialValue() == True ) + self.assertTrue( self.T.isSetInitialValue() == False ) _dummyList = [ t ]; _dummyList[:] = []; del _dummyList pass def test_L3Trigger_setPersistent(self): i = self.T.setPersistent(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.T.getPersistent() == False ) - self.assert_( self.T.isSetPersistent() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.T.getPersistent() == False ) + self.assertTrue( self.T.isSetPersistent() == True ) i = self.T.setPersistent(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.T.getPersistent() == True ) - self.assert_( self.T.isSetPersistent() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.T.getPersistent() == True ) + self.assertTrue( self.T.isSetPersistent() == True ) pass def test_L3Trigger_setPersistent1(self): t = libsbml.Trigger(2,4) i = t.setPersistent(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.T.getPersistent() == True ) - self.assert_( self.T.isSetPersistent() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.T.getPersistent() == True ) + self.assertTrue( self.T.isSetPersistent() == False ) _dummyList = [ t ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestL3Unit.py b/src/bindings/python/test/sbml/TestL3Unit.py index 107947fad9..d8abc30d7b 100644 --- a/src/bindings/python/test/sbml/TestL3Unit.py +++ b/src/bindings/python/test/sbml/TestL3Unit.py @@ -54,20 +54,20 @@ def tearDown(self): pass def test_L3_Unit_NS(self): - self.assert_( self.U.getNamespaces() != None ) - self.assert_( self.U.getNamespaces().getLength() == 1 ) - self.assert_(( "http://www.sbml.org/sbml/level3/version1/core" == self.U.getNamespaces().getURI(0) )) + self.assertTrue( self.U.getNamespaces() != None ) + self.assertTrue( self.U.getNamespaces().getLength() == 1 ) + self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.U.getNamespaces().getURI(0) )) pass def test_L3_Unit_create(self): - self.assert_( self.U.getTypeCode() == libsbml.SBML_UNIT ) - self.assert_( self.U.getMetaId() == "" ) - self.assert_( self.U.getNotes() == None ) - self.assert_( self.U.getAnnotation() == None ) - self.assert_( self.U.getKind() == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( self.U.getTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( self.U.getMetaId() == "" ) + self.assertTrue( self.U.getNotes() == None ) + self.assertTrue( self.U.getAnnotation() == None ) + self.assertTrue( self.U.getKind() == libsbml.UNIT_KIND_INVALID ) self.assertEqual( True, isnan(self.U.getExponentAsDouble()) ) self.assertEqual( True, isnan(self.U.getMultiplier()) ) - self.assert_( self.U.getScale() == SBML_INT_MAX ) + self.assertTrue( self.U.getScale() == SBML_INT_MAX ) self.assertEqual( False, self.U.isSetKind() ) self.assertEqual( False, self.U.isSetExponent() ) self.assertEqual( False, self.U.isSetMultiplier() ) @@ -80,15 +80,15 @@ def test_L3_Unit_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) u = libsbml.Unit(sbmlns) - self.assert_( u.getTypeCode() == libsbml.SBML_UNIT ) - self.assert_( u.getMetaId() == "" ) - self.assert_( u.getNotes() == None ) - self.assert_( u.getAnnotation() == None ) - self.assert_( u.getLevel() == 3 ) - self.assert_( u.getVersion() == 1 ) - self.assert_( u.getNamespaces() != None ) - self.assert_( u.getNamespaces().getLength() == 2 ) - self.assert_( u.getKind() == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( u.getTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( u.getMetaId() == "" ) + self.assertTrue( u.getNotes() == None ) + self.assertTrue( u.getAnnotation() == None ) + self.assertTrue( u.getLevel() == 3 ) + self.assertTrue( u.getVersion() == 1 ) + self.assertTrue( u.getNamespaces() != None ) + self.assertTrue( u.getNamespaces().getLength() == 2 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_INVALID ) self.assertEqual( True, isnan(u.getExponentAsDouble()) ) self.assertEqual( True, isnan(u.getMultiplier()) ) self.assertEqual( False, u.isSetKind() ) @@ -103,7 +103,7 @@ def test_L3_Unit_exponent(self): self.assertEqual( False, self.U.isSetExponent() ) self.assertEqual( True, isnan(self.U.getExponentAsDouble()) ) self.U.setExponent(exponent) - self.assert_( self.U.getExponentAsDouble() == exponent ) + self.assertTrue( self.U.getExponentAsDouble() == exponent ) self.assertEqual( True, self.U.isSetExponent() ) pass @@ -129,7 +129,7 @@ def test_L3_Unit_kind(self): kind = "mole"; self.assertEqual( False, self.U.isSetKind() ) self.U.setKind(libsbml.UnitKind_forName(kind)) - self.assert_( self.U.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( self.U.getKind() == libsbml.UNIT_KIND_MOLE ) self.assertEqual( True, self.U.isSetKind() ) pass @@ -138,16 +138,16 @@ def test_L3_Unit_multiplier(self): self.assertEqual( False, self.U.isSetMultiplier() ) self.assertEqual( True, isnan(self.U.getMultiplier()) ) self.U.setMultiplier(multiplier) - self.assert_( self.U.getMultiplier() == multiplier ) + self.assertTrue( self.U.getMultiplier() == multiplier ) self.assertEqual( True, self.U.isSetMultiplier() ) pass def test_L3_Unit_scale(self): scale = 2 self.assertEqual( False, self.U.isSetScale() ) - self.assert_( self.U.getScale() == SBML_INT_MAX ) + self.assertTrue( self.U.getScale() == SBML_INT_MAX ) self.U.setScale(scale) - self.assert_( self.U.getScale() == scale ) + self.assertTrue( self.U.getScale() == scale ) self.assertEqual( True, self.U.isSetScale() ) pass diff --git a/src/bindings/python/test/sbml/TestListOf.py b/src/bindings/python/test/sbml/TestListOf.py index bca05cdc21..30cb6e415a 100644 --- a/src/bindings/python/test/sbml/TestListOf.py +++ b/src/bindings/python/test/sbml/TestListOf.py @@ -41,15 +41,15 @@ def test_ListOf_append(self): m = libsbml.Model(2,4) m.createCompartment() loc = m.getListOfCompartments() - self.assert_( loc.size() == 1 ) + self.assertTrue( loc.size() == 1 ) c = libsbml.Compartment(2,4) i = loc.append(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( loc.size() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( loc.size() == 2 ) sp = libsbml.Species(2,4) i = loc.append(sp) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( loc.size() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( loc.size() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList _dummyList = [ sp ]; _dummyList[:] = []; del _dummyList pass @@ -62,15 +62,15 @@ def test_ListOf_clear(self): lo.append(sp) lo.append(sp) lo.append(sp) - self.assert_( lo.size() == 5 ) + self.assertTrue( lo.size() == 5 ) lo.clear(True) - self.assert_( lo.size() == 0 ) + self.assertTrue( lo.size() == 0 ) lo.append(sp) lo.append(sp) lo.append(sp) lo.append(sp) lo.appendAndOwn(sp) - self.assert_( lo.size() == 5 ) + self.assertTrue( lo.size() == 5 ) elem = lo.get(0) _dummyList = [ elem ]; _dummyList[:] = []; del _dummyList elem = lo.get(1) @@ -82,17 +82,17 @@ def test_ListOf_clear(self): elem = lo.get(4) _dummyList = [ elem ]; _dummyList[:] = []; del _dummyList lo.clear(False) - self.assert_( lo.size() == 0 ) + self.assertTrue( lo.size() == 0 ) _dummyList = [ lo ]; _dummyList[:] = []; del _dummyList pass def test_ListOf_create(self): lo = libsbml.ListOf(2,4) - self.assert_( lo.getTypeCode() == libsbml.SBML_LIST_OF ) - self.assert_( lo.getNotes() == None ) - self.assert_( lo.getAnnotation() == None ) - self.assert_( lo.getMetaId() == "" ) - self.assert_( lo.size() == 0 ) + self.assertTrue( lo.getTypeCode() == libsbml.SBML_LIST_OF ) + self.assertTrue( lo.getNotes() == None ) + self.assertTrue( lo.getAnnotation() == None ) + self.assertTrue( lo.getMetaId() == "" ) + self.assertTrue( lo.size() == 0 ) _dummyList = [ lo ]; _dummyList[:] = []; del _dummyList pass @@ -103,13 +103,13 @@ def test_ListOf_free_NULL(self): def test_ListOf_remove(self): lo = libsbml.ListOf(2,4) sp = libsbml.Species(2,4) - self.assert_( lo.size() == 0 ) + self.assertTrue( lo.size() == 0 ) lo.append(sp) lo.append(sp) lo.append(sp) lo.append(sp) lo.append(sp) - self.assert_( lo.size() == 5 ) + self.assertTrue( lo.size() == 5 ) elem = lo.remove(0) _dummyList = [ elem ]; _dummyList[:] = []; del _dummyList elem = lo.remove(0) @@ -120,13 +120,13 @@ def test_ListOf_remove(self): _dummyList = [ elem ]; _dummyList[:] = []; del _dummyList elem = lo.remove(0) _dummyList = [ elem ]; _dummyList[:] = []; del _dummyList - self.assert_( lo.size() == 0 ) + self.assertTrue( lo.size() == 0 ) lo.append(sp) lo.append(sp) lo.append(sp) lo.append(sp) lo.appendAndOwn(sp) - self.assert_( lo.size() == 5 ) + self.assertTrue( lo.size() == 5 ) _dummyList = [ lo ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestModel.py b/src/bindings/python/test/sbml/TestModel.py index c3f071e761..89ee34ae5f 100644 --- a/src/bindings/python/test/sbml/TestModel.py +++ b/src/bindings/python/test/sbml/TestModel.py @@ -73,31 +73,31 @@ def test_KineticLaw_getParameterById(self): r1.setKineticLaw(kl) self.M.addReaction(r1) kl1 = self.M.getReaction(0).getKineticLaw() - self.assert_( kl1.getParameter( "k1" ) != k3 ) - self.assert_( kl1.getParameter( "k1" ) != k1 ) - self.assert_( kl1.getParameter( "k2" ) != k4 ) - self.assert_( kl1.getParameter( "k3" ) == None ) + self.assertTrue( kl1.getParameter( "k1" ) != k3 ) + self.assertTrue( kl1.getParameter( "k1" ) != k1 ) + self.assertTrue( kl1.getParameter( "k2" ) != k4 ) + self.assertTrue( kl1.getParameter( "k3" ) == None ) pass def test_Model_addCompartment(self): c = libsbml.Compartment(2,4) c.setId( "c") self.M.addCompartment(c) - self.assert_( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) pass def test_Model_addParameter(self): p = libsbml.Parameter(2,4) p.setId( "p") self.M.addParameter(p) - self.assert_( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.getNumParameters() == 1 ) pass def test_Model_addReaction(self): r = libsbml.Reaction(2,4) r.setId( "r") self.M.addReaction(r) - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) pass def test_Model_addRules(self): @@ -112,7 +112,7 @@ def test_Model_addRules(self): self.M.addRule(r1) self.M.addRule(r2) self.M.addRule(r3) - self.assert_( self.M.getNumRules() == 3 ) + self.assertTrue( self.M.getNumRules() == 3 ) pass def test_Model_addSpecies(self): @@ -120,7 +120,7 @@ def test_Model_addSpecies(self): s.setId( "s") s.setCompartment( "c") self.M.addSpecies(s) - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) pass def test_Model_add_get_Event(self): @@ -134,10 +134,10 @@ def test_Model_add_get_Event(self): e2.createEventAssignment() self.M.addEvent(e1) self.M.addEvent(e2) - self.assert_( self.M.getNumEvents() == 2 ) - self.assert_( self.M.getEvent(0) != e1 ) - self.assert_( self.M.getEvent(1) != e2 ) - self.assert_( self.M.getEvent(2) == None ) + self.assertTrue( self.M.getNumEvents() == 2 ) + self.assertTrue( self.M.getEvent(0) != e1 ) + self.assertTrue( self.M.getEvent(1) != e2 ) + self.assertTrue( self.M.getEvent(2) == None ) pass def test_Model_add_get_FunctionDefinitions(self): @@ -149,10 +149,10 @@ def test_Model_add_get_FunctionDefinitions(self): fd2.setMath(libsbml.parseFormula("2")) self.M.addFunctionDefinition(fd1) self.M.addFunctionDefinition(fd2) - self.assert_( self.M.getNumFunctionDefinitions() == 2 ) - self.assert_( self.M.getFunctionDefinition(0) != fd1 ) - self.assert_( self.M.getFunctionDefinition(1) != fd2 ) - self.assert_( self.M.getFunctionDefinition(2) == None ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 2 ) + self.assertTrue( self.M.getFunctionDefinition(0) != fd1 ) + self.assertTrue( self.M.getFunctionDefinition(1) != fd2 ) + self.assertTrue( self.M.getFunctionDefinition(2) == None ) pass def test_Model_add_get_UnitDefinitions(self): @@ -164,110 +164,110 @@ def test_Model_add_get_UnitDefinitions(self): ud2.createUnit() self.M.addUnitDefinition(ud1) self.M.addUnitDefinition(ud2) - self.assert_( self.M.getNumUnitDefinitions() == 2 ) - self.assert_( self.M.getUnitDefinition(0) != ud1 ) - self.assert_( self.M.getUnitDefinition(1) != ud2 ) - self.assert_( self.M.getUnitDefinition(2) == None ) + self.assertTrue( self.M.getNumUnitDefinitions() == 2 ) + self.assertTrue( self.M.getUnitDefinition(0) != ud1 ) + self.assertTrue( self.M.getUnitDefinition(1) != ud2 ) + self.assertTrue( self.M.getUnitDefinition(2) == None ) pass def test_Model_create(self): - self.assert_( self.M.getTypeCode() == libsbml.SBML_MODEL ) - self.assert_( self.M.getMetaId() == "" ) - self.assert_( self.M.getNotes() == None ) - self.assert_( self.M.getAnnotation() == None ) - self.assert_( self.M.getId() == "" ) - self.assert_( self.M.getName() == "" ) + self.assertTrue( self.M.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( self.M.getMetaId() == "" ) + self.assertTrue( self.M.getNotes() == None ) + self.assertTrue( self.M.getAnnotation() == None ) + self.assertTrue( self.M.getId() == "" ) + self.assertTrue( self.M.getName() == "" ) self.assertEqual( False, self.M.isSetId() ) self.assertEqual( False, self.M.isSetName() ) - self.assert_( self.M.getNumUnitDefinitions() == 0 ) - self.assert_( self.M.getNumCompartments() == 0 ) - self.assert_( self.M.getNumSpecies() == 0 ) - self.assert_( self.M.getNumParameters() == 0 ) - self.assert_( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 0 ) + self.assertTrue( self.M.getNumCompartments() == 0 ) + self.assertTrue( self.M.getNumSpecies() == 0 ) + self.assertTrue( self.M.getNumParameters() == 0 ) + self.assertTrue( self.M.getNumReactions() == 0 ) pass def test_Model_createAlgebraicRule(self): ar = self.M.createAlgebraicRule() - self.assert_( ar != None ) - self.assert_( self.M.getNumRules() == 1 ) - self.assert_( self.M.getRule(0) == ar ) + self.assertTrue( ar != None ) + self.assertTrue( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getRule(0) == ar ) pass def test_Model_createAssignmentRule(self): ar = self.M.createAssignmentRule() - self.assert_( ar != None ) - self.assert_( self.M.getNumRules() == 1 ) - self.assert_( self.M.getRule(0) == ar ) + self.assertTrue( ar != None ) + self.assertTrue( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getRule(0) == ar ) pass def test_Model_createCompartment(self): c = self.M.createCompartment() - self.assert_( c != None ) - self.assert_( self.M.getNumCompartments() == 1 ) - self.assert_( self.M.getCompartment(0) == c ) + self.assertTrue( c != None ) + self.assertTrue( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getCompartment(0) == c ) pass def test_Model_createCompartmentType(self): c = self.M.createCompartmentType() - self.assert_( c != None ) - self.assert_( self.M.getNumCompartmentTypes() == 1 ) - self.assert_( self.M.getCompartmentType(0) == c ) + self.assertTrue( c != None ) + self.assertTrue( self.M.getNumCompartmentTypes() == 1 ) + self.assertTrue( self.M.getCompartmentType(0) == c ) pass def test_Model_createConstraint(self): c = self.M.createConstraint() - self.assert_( c != None ) - self.assert_( self.M.getNumConstraints() == 1 ) - self.assert_( self.M.getConstraint(0) == c ) + self.assertTrue( c != None ) + self.assertTrue( self.M.getNumConstraints() == 1 ) + self.assertTrue( self.M.getConstraint(0) == c ) pass def test_Model_createEvent(self): e = self.M.createEvent() - self.assert_( e != None ) - self.assert_( self.M.getNumEvents() == 1 ) - self.assert_( self.M.getEvent(0) == e ) + self.assertTrue( e != None ) + self.assertTrue( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.getEvent(0) == e ) pass def test_Model_createEventAssignment(self): self.M.createEvent() self.M.createEvent() ea = self.M.createEventAssignment() - self.assert_( ea != None ) - self.assert_( self.M.getNumEvents() == 2 ) + self.assertTrue( ea != None ) + self.assertTrue( self.M.getNumEvents() == 2 ) e = self.M.getEvent(1) - self.assert_( e.getNumEventAssignments() == 1 ) - self.assert_( e.getEventAssignment(0) == ea ) + self.assertTrue( e.getNumEventAssignments() == 1 ) + self.assertTrue( e.getEventAssignment(0) == ea ) pass def test_Model_createEventAssignment_noEvent(self): - self.assert_( self.M.getNumEvents() == 0 ) - self.assert_( self.M.createEventAssignment() == None ) + self.assertTrue( self.M.getNumEvents() == 0 ) + self.assertTrue( self.M.createEventAssignment() == None ) pass def test_Model_createFunctionDefinition(self): fd = self.M.createFunctionDefinition() - self.assert_( fd != None ) - self.assert_( self.M.getNumFunctionDefinitions() == 1 ) - self.assert_( self.M.getFunctionDefinition(0) == fd ) + self.assertTrue( fd != None ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 1 ) + self.assertTrue( self.M.getFunctionDefinition(0) == fd ) pass def test_Model_createInitialAssignment(self): c = self.M.createInitialAssignment() - self.assert_( c != None ) - self.assert_( self.M.getNumInitialAssignments() == 1 ) - self.assert_( self.M.getInitialAssignment(0) == c ) + self.assertTrue( c != None ) + self.assertTrue( self.M.getNumInitialAssignments() == 1 ) + self.assertTrue( self.M.getInitialAssignment(0) == c ) pass def test_Model_createKineticLaw(self): self.M.createReaction() self.M.createReaction() kl = self.M.createKineticLaw() - self.assert_( kl != None ) - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( kl != None ) + self.assertTrue( self.M.getNumReactions() == 2 ) r = self.M.getReaction(0) - self.assert_( r.getKineticLaw() == None ) + self.assertTrue( r.getKineticLaw() == None ) r = self.M.getReaction(1) - self.assert_( r.getKineticLaw() == kl ) + self.assertTrue( r.getKineticLaw() == kl ) pass def test_Model_createKineticLawParameter(self): @@ -275,142 +275,142 @@ def test_Model_createKineticLawParameter(self): self.M.createReaction() self.M.createKineticLaw() p = self.M.createKineticLawParameter() - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( self.M.getNumReactions() == 2 ) r = self.M.getReaction(0) - self.assert_( r.getKineticLaw() == None ) + self.assertTrue( r.getKineticLaw() == None ) r = self.M.getReaction(1) - self.assert_( r.getKineticLaw() != None ) + self.assertTrue( r.getKineticLaw() != None ) kl = r.getKineticLaw() - self.assert_( kl.getNumParameters() == 1 ) - self.assert_( kl.getParameter(0) == p ) + self.assertTrue( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getParameter(0) == p ) pass def test_Model_createKineticLawParameter_noKineticLaw(self): r = self.M.createReaction() - self.assert_( r.getKineticLaw() == None ) - self.assert_( self.M.createKineticLawParameter() == None ) + self.assertTrue( r.getKineticLaw() == None ) + self.assertTrue( self.M.createKineticLawParameter() == None ) pass def test_Model_createKineticLawParameter_noReaction(self): - self.assert_( self.M.getNumReactions() == 0 ) - self.assert_( self.M.createKineticLawParameter() == None ) + self.assertTrue( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.createKineticLawParameter() == None ) pass def test_Model_createKineticLaw_alreadyExists(self): r = self.M.createReaction() kl = self.M.createKineticLaw() - self.assert_( r.getKineticLaw() == kl ) + self.assertTrue( r.getKineticLaw() == kl ) pass def test_Model_createKineticLaw_noReaction(self): - self.assert_( self.M.getNumReactions() == 0 ) - self.assert_( self.M.createKineticLaw() == None ) + self.assertTrue( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.createKineticLaw() == None ) pass def test_Model_createModifier(self): self.M.createReaction() self.M.createReaction() msr = self.M.createModifier() - self.assert_( msr != None ) - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( msr != None ) + self.assertTrue( self.M.getNumReactions() == 2 ) r = self.M.getReaction(1) - self.assert_( r.getNumModifiers() == 1 ) - self.assert_( r.getModifier(0) == msr ) + self.assertTrue( r.getNumModifiers() == 1 ) + self.assertTrue( r.getModifier(0) == msr ) pass def test_Model_createModifier_noReaction(self): - self.assert_( self.M.getNumReactions() == 0 ) - self.assert_( self.M.createModifier() == None ) + self.assertTrue( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.createModifier() == None ) pass def test_Model_createParameter(self): p = self.M.createParameter() - self.assert_( p != None ) - self.assert_( self.M.getNumParameters() == 1 ) - self.assert_( self.M.getParameter(0) == p ) + self.assertTrue( p != None ) + self.assertTrue( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.getParameter(0) == p ) pass def test_Model_createProduct(self): self.M.createReaction() self.M.createReaction() sr = self.M.createProduct() - self.assert_( sr != None ) - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( sr != None ) + self.assertTrue( self.M.getNumReactions() == 2 ) r = self.M.getReaction(1) - self.assert_( r.getNumProducts() == 1 ) - self.assert_( r.getProduct(0) == sr ) + self.assertTrue( r.getNumProducts() == 1 ) + self.assertTrue( r.getProduct(0) == sr ) pass def test_Model_createProduct_noReaction(self): - self.assert_( self.M.getNumReactions() == 0 ) - self.assert_( self.M.createProduct() == None ) + self.assertTrue( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.createProduct() == None ) pass def test_Model_createRateRule(self): rr = self.M.createRateRule() - self.assert_( rr != None ) - self.assert_( self.M.getNumRules() == 1 ) - self.assert_( self.M.getRule(0) == rr ) + self.assertTrue( rr != None ) + self.assertTrue( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getRule(0) == rr ) pass def test_Model_createReactant(self): self.M.createReaction() self.M.createReaction() sr = self.M.createReactant() - self.assert_( sr != None ) - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( sr != None ) + self.assertTrue( self.M.getNumReactions() == 2 ) r = self.M.getReaction(1) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getReactant(0) == sr ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getReactant(0) == sr ) pass def test_Model_createReactant_noReaction(self): - self.assert_( self.M.getNumReactions() == 0 ) - self.assert_( self.M.createReactant() == None ) + self.assertTrue( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.createReactant() == None ) pass def test_Model_createReaction(self): r = self.M.createReaction() - self.assert_( r != None ) - self.assert_( self.M.getNumReactions() == 1 ) - self.assert_( self.M.getReaction(0) == r ) + self.assertTrue( r != None ) + self.assertTrue( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getReaction(0) == r ) pass def test_Model_createSpecies(self): s = self.M.createSpecies() - self.assert_( s != None ) - self.assert_( self.M.getNumSpecies() == 1 ) - self.assert_( self.M.getSpecies(0) == s ) + self.assertTrue( s != None ) + self.assertTrue( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getSpecies(0) == s ) pass def test_Model_createSpeciesType(self): c = self.M.createSpeciesType() - self.assert_( c != None ) - self.assert_( self.M.getNumSpeciesTypes() == 1 ) - self.assert_( self.M.getSpeciesType(0) == c ) + self.assertTrue( c != None ) + self.assertTrue( self.M.getNumSpeciesTypes() == 1 ) + self.assertTrue( self.M.getSpeciesType(0) == c ) pass def test_Model_createUnit(self): self.M.createUnitDefinition() self.M.createUnitDefinition() u = self.M.createUnit() - self.assert_( u != None ) - self.assert_( self.M.getNumUnitDefinitions() == 2 ) + self.assertTrue( u != None ) + self.assertTrue( self.M.getNumUnitDefinitions() == 2 ) ud = self.M.getUnitDefinition(1) - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0) == u ) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0) == u ) pass def test_Model_createUnitDefinition(self): ud = self.M.createUnitDefinition() - self.assert_( ud != None ) - self.assert_( self.M.getNumUnitDefinitions() == 1 ) - self.assert_( self.M.getUnitDefinition(0) == ud ) + self.assertTrue( ud != None ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getUnitDefinition(0) == ud ) pass def test_Model_createUnit_noUnitDefinition(self): - self.assert_( self.M.getNumUnitDefinitions() == 0 ) - self.assert_( self.M.createUnit() == None ) + self.assertTrue( self.M.getNumUnitDefinitions() == 0 ) + self.assertTrue( self.M.createUnit() == None ) pass def test_Model_createWithNS(self): @@ -419,14 +419,14 @@ def test_Model_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Model(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_MODEL ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_MODEL ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -441,11 +441,11 @@ def test_Model_getCompartment(self): c2.setId( "B") self.M.addCompartment(c1) self.M.addCompartment(c2) - self.assert_( self.M.getNumCompartments() == 2 ) + self.assertTrue( self.M.getNumCompartments() == 2 ) c1 = self.M.getCompartment(0) c2 = self.M.getCompartment(1) - self.assert_(( "A" == c1.getId() )) - self.assert_(( "B" == c2.getId() )) + self.assertTrue(( "A" == c1.getId() )) + self.assertTrue(( "B" == c2.getId() )) pass def test_Model_getCompartmentById(self): @@ -455,10 +455,10 @@ def test_Model_getCompartmentById(self): c2.setId( "B" ) self.M.addCompartment(c1) self.M.addCompartment(c2) - self.assert_( self.M.getNumCompartments() == 2 ) - self.assert_( self.M.getCompartment( "A" ) != c1 ) - self.assert_( self.M.getCompartment( "B" ) != c2 ) - self.assert_( self.M.getCompartment( "C" ) == None ) + self.assertTrue( self.M.getNumCompartments() == 2 ) + self.assertTrue( self.M.getCompartment( "A" ) != c1 ) + self.assertTrue( self.M.getCompartment( "B" ) != c2 ) + self.assertTrue( self.M.getCompartment( "C" ) == None ) pass def test_Model_getEventById(self): @@ -474,10 +474,10 @@ def test_Model_getEventById(self): e2.setId( "e2" ) self.M.addEvent(e1) self.M.addEvent(e2) - self.assert_( self.M.getNumEvents() == 2 ) - self.assert_( self.M.getEvent( "e1" ) != e1 ) - self.assert_( self.M.getEvent( "e2" ) != e2 ) - self.assert_( self.M.getEvent( "e3" ) == None ) + self.assertTrue( self.M.getNumEvents() == 2 ) + self.assertTrue( self.M.getEvent( "e1" ) != e1 ) + self.assertTrue( self.M.getEvent( "e2" ) != e2 ) + self.assertTrue( self.M.getEvent( "e3" ) == None ) pass def test_Model_getFunctionDefinitionById(self): @@ -489,10 +489,10 @@ def test_Model_getFunctionDefinitionById(self): fd2.setMath(libsbml.parseFormula("2")) self.M.addFunctionDefinition(fd1) self.M.addFunctionDefinition(fd2) - self.assert_( self.M.getNumFunctionDefinitions() == 2 ) - self.assert_( self.M.getFunctionDefinition( "sin" ) != fd1 ) - self.assert_( self.M.getFunctionDefinition( "cos" ) != fd2 ) - self.assert_( self.M.getFunctionDefinition( "tan" ) == None ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 2 ) + self.assertTrue( self.M.getFunctionDefinition( "sin" ) != fd1 ) + self.assertTrue( self.M.getFunctionDefinition( "cos" ) != fd2 ) + self.assertTrue( self.M.getFunctionDefinition( "tan" ) == None ) pass def test_Model_getNumSpeciesWithBoundaryCondition(self): @@ -508,17 +508,17 @@ def test_Model_getNumSpeciesWithBoundaryCondition(self): s1.setBoundaryCondition(True) s2.setBoundaryCondition(False) s3.setBoundaryCondition(True) - self.assert_( self.M.getNumSpecies() == 0 ) - self.assert_( self.M.getNumSpeciesWithBoundaryCondition() == 0 ) + self.assertTrue( self.M.getNumSpecies() == 0 ) + self.assertTrue( self.M.getNumSpeciesWithBoundaryCondition() == 0 ) self.M.addSpecies(s1) - self.assert_( self.M.getNumSpecies() == 1 ) - self.assert_( self.M.getNumSpeciesWithBoundaryCondition() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpeciesWithBoundaryCondition() == 1 ) self.M.addSpecies(s2) - self.assert_( self.M.getNumSpecies() == 2 ) - self.assert_( self.M.getNumSpeciesWithBoundaryCondition() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 2 ) + self.assertTrue( self.M.getNumSpeciesWithBoundaryCondition() == 1 ) self.M.addSpecies(s3) - self.assert_( self.M.getNumSpecies() == 3 ) - self.assert_( self.M.getNumSpeciesWithBoundaryCondition() == 2 ) + self.assertTrue( self.M.getNumSpecies() == 3 ) + self.assertTrue( self.M.getNumSpeciesWithBoundaryCondition() == 2 ) pass def test_Model_getParameter(self): @@ -528,11 +528,11 @@ def test_Model_getParameter(self): p2.setId( "Km2") self.M.addParameter(p1) self.M.addParameter(p2) - self.assert_( self.M.getNumParameters() == 2 ) + self.assertTrue( self.M.getNumParameters() == 2 ) p1 = self.M.getParameter(0) p2 = self.M.getParameter(1) - self.assert_(( "Km1" == p1.getId() )) - self.assert_(( "Km2" == p2.getId() )) + self.assertTrue(( "Km1" == p1.getId() )) + self.assertTrue(( "Km2" == p2.getId() )) pass def test_Model_getParameterById(self): @@ -542,10 +542,10 @@ def test_Model_getParameterById(self): p2.setId( "Km2" ) self.M.addParameter(p1) self.M.addParameter(p2) - self.assert_( self.M.getNumParameters() == 2 ) - self.assert_( self.M.getParameter( "Km1" ) != p1 ) - self.assert_( self.M.getParameter( "Km2" ) != p2 ) - self.assert_( self.M.getParameter( "Km3" ) == None ) + self.assertTrue( self.M.getNumParameters() == 2 ) + self.assertTrue( self.M.getParameter( "Km1" ) != p1 ) + self.assertTrue( self.M.getParameter( "Km2" ) != p2 ) + self.assertTrue( self.M.getParameter( "Km3" ) == None ) pass def test_Model_getReaction(self): @@ -555,11 +555,11 @@ def test_Model_getReaction(self): r2.setId( "reaction_2") self.M.addReaction(r1) self.M.addReaction(r2) - self.assert_( self.M.getNumReactions() == 2 ) + self.assertTrue( self.M.getNumReactions() == 2 ) r1 = self.M.getReaction(0) r2 = self.M.getReaction(1) - self.assert_(( "reaction_1" == r1.getId() )) - self.assert_(( "reaction_2" == r2.getId() )) + self.assertTrue(( "reaction_1" == r1.getId() )) + self.assertTrue(( "reaction_2" == r2.getId() )) pass def test_Model_getReactionById(self): @@ -569,10 +569,10 @@ def test_Model_getReactionById(self): r2.setId( "reaction_2" ) self.M.addReaction(r1) self.M.addReaction(r2) - self.assert_( self.M.getNumReactions() == 2 ) - self.assert_( self.M.getReaction( "reaction_1" ) != r1 ) - self.assert_( self.M.getReaction( "reaction_2" ) != r2 ) - self.assert_( self.M.getReaction( "reaction_3" ) == None ) + self.assertTrue( self.M.getNumReactions() == 2 ) + self.assertTrue( self.M.getReaction( "reaction_1" ) != r1 ) + self.assertTrue( self.M.getReaction( "reaction_2" ) != r2 ) + self.assertTrue( self.M.getReaction( "reaction_3" ) == None ) pass def test_Model_getRules(self): @@ -591,15 +591,15 @@ def test_Model_getRules(self): self.M.addRule(scr) self.M.addRule(cvr) self.M.addRule(pr) - self.assert_( self.M.getNumRules() == 4 ) + self.assertTrue( self.M.getNumRules() == 4 ) ar = self.M.getRule(0) scr = self.M.getRule(1) cvr = self.M.getRule(2) pr = self.M.getRule(3) - self.assert_(( "x + 1" == ar.getFormula() )) - self.assert_(( "k * t/(1 + k)" == scr.getFormula() )) - self.assert_(( "0.10 * t" == cvr.getFormula() )) - self.assert_(( "k3/k2" == pr.getFormula() )) + self.assertTrue(( "x + 1" == ar.getFormula() )) + self.assertTrue(( "k * t/(1 + k)" == scr.getFormula() )) + self.assertTrue(( "0.10 * t" == cvr.getFormula() )) + self.assertTrue(( "k3/k2" == pr.getFormula() )) pass def test_Model_getSpecies(self): @@ -611,11 +611,11 @@ def test_Model_getSpecies(self): s2.setCompartment( "c") self.M.addSpecies(s1) self.M.addSpecies(s2) - self.assert_( self.M.getNumSpecies() == 2 ) + self.assertTrue( self.M.getNumSpecies() == 2 ) s1 = self.M.getSpecies(0) s2 = self.M.getSpecies(1) - self.assert_(( "Glucose" == s1.getId() )) - self.assert_(( "Glucose_6_P" == s2.getId() )) + self.assertTrue(( "Glucose" == s1.getId() )) + self.assertTrue(( "Glucose_6_P" == s2.getId() )) pass def test_Model_getSpeciesById(self): @@ -627,10 +627,10 @@ def test_Model_getSpeciesById(self): s2.setCompartment( "c") self.M.addSpecies(s1) self.M.addSpecies(s2) - self.assert_( self.M.getNumSpecies() == 2 ) - self.assert_( self.M.getSpecies( "Glucose" ) != s1 ) - self.assert_( self.M.getSpecies( "Glucose_6_P") != s2 ) - self.assert_( self.M.getSpecies( "Glucose2" ) == None ) + self.assertTrue( self.M.getNumSpecies() == 2 ) + self.assertTrue( self.M.getSpecies( "Glucose" ) != s1 ) + self.assertTrue( self.M.getSpecies( "Glucose_6_P") != s2 ) + self.assertTrue( self.M.getSpecies( "Glucose2" ) == None ) pass def test_Model_getSpeciesReferenceById(self): @@ -639,8 +639,8 @@ def test_Model_getSpeciesReferenceById(self): sr = r1.createReactant() sr.setId( "s1") self.M.addReaction(r1) - self.assert_( self.M.getNumReactions() == 1 ) - self.assert_( self.M.getSpeciesReference( "s1" ) != sr ) + self.assertTrue( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getSpeciesReference( "s1" ) != sr ) pass def test_Model_getUnitDefinition(self): @@ -652,11 +652,11 @@ def test_Model_getUnitDefinition(self): ud2.createUnit() self.M.addUnitDefinition(ud1) self.M.addUnitDefinition(ud2) - self.assert_( self.M.getNumUnitDefinitions() == 2 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 2 ) ud1 = self.M.getUnitDefinition(0) ud2 = self.M.getUnitDefinition(1) - self.assert_(( "mmls" == ud1.getId() )) - self.assert_(( "volume" == ud2.getId() )) + self.assertTrue(( "mmls" == ud1.getId() )) + self.assertTrue(( "volume" == ud2.getId() )) pass def test_Model_getUnitDefinitionById(self): @@ -668,10 +668,10 @@ def test_Model_getUnitDefinitionById(self): ud2.createUnit() self.M.addUnitDefinition(ud1) self.M.addUnitDefinition(ud2) - self.assert_( self.M.getNumUnitDefinitions() == 2 ) - self.assert_( self.M.getUnitDefinition( "mmls" ) != ud1 ) - self.assert_( self.M.getUnitDefinition( "volume" ) != ud2 ) - self.assert_( self.M.getUnitDefinition( "rototillers") == None ) + self.assertTrue( self.M.getNumUnitDefinitions() == 2 ) + self.assertTrue( self.M.getUnitDefinition( "mmls" ) != ud1 ) + self.assertTrue( self.M.getUnitDefinition( "volume" ) != ud2 ) + self.assertTrue( self.M.getUnitDefinition( "rototillers") == None ) pass def test_Model_removeCompartment(self): @@ -679,12 +679,12 @@ def test_Model_removeCompartment(self): o2 = self.M.createCompartment() o3 = self.M.createCompartment() o3.setId("test") - self.assert_( self.M.removeCompartment(0) == o1 ) - self.assert_( self.M.getNumCompartments() == 2 ) - self.assert_( self.M.removeCompartment(0) == o2 ) - self.assert_( self.M.getNumCompartments() == 1 ) - self.assert_( self.M.removeCompartment("test") == o3 ) - self.assert_( self.M.getNumCompartments() == 0 ) + self.assertTrue( self.M.removeCompartment(0) == o1 ) + self.assertTrue( self.M.getNumCompartments() == 2 ) + self.assertTrue( self.M.removeCompartment(0) == o2 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.removeCompartment("test") == o3 ) + self.assertTrue( self.M.getNumCompartments() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -695,12 +695,12 @@ def test_Model_removeCompartmentType(self): o2 = self.M.createCompartmentType() o3 = self.M.createCompartmentType() o3.setId("test") - self.assert_( self.M.removeCompartmentType(0) == o1 ) - self.assert_( self.M.getNumCompartmentTypes() == 2 ) - self.assert_( self.M.removeCompartmentType(0) == o2 ) - self.assert_( self.M.getNumCompartmentTypes() == 1 ) - self.assert_( self.M.removeCompartmentType("test") == o3 ) - self.assert_( self.M.getNumCompartmentTypes() == 0 ) + self.assertTrue( self.M.removeCompartmentType(0) == o1 ) + self.assertTrue( self.M.getNumCompartmentTypes() == 2 ) + self.assertTrue( self.M.removeCompartmentType(0) == o2 ) + self.assertTrue( self.M.getNumCompartmentTypes() == 1 ) + self.assertTrue( self.M.removeCompartmentType("test") == o3 ) + self.assertTrue( self.M.getNumCompartmentTypes() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -710,12 +710,12 @@ def test_Model_removeConstraint(self): o1 = self.M.createConstraint() o2 = self.M.createConstraint() o3 = self.M.createConstraint() - self.assert_( self.M.removeConstraint(0) == o1 ) - self.assert_( self.M.getNumConstraints() == 2 ) - self.assert_( self.M.removeConstraint(0) == o2 ) - self.assert_( self.M.getNumConstraints() == 1 ) - self.assert_( self.M.removeConstraint(0) == o3 ) - self.assert_( self.M.getNumConstraints() == 0 ) + self.assertTrue( self.M.removeConstraint(0) == o1 ) + self.assertTrue( self.M.getNumConstraints() == 2 ) + self.assertTrue( self.M.removeConstraint(0) == o2 ) + self.assertTrue( self.M.getNumConstraints() == 1 ) + self.assertTrue( self.M.removeConstraint(0) == o3 ) + self.assertTrue( self.M.getNumConstraints() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -726,12 +726,12 @@ def test_Model_removeEvent(self): o2 = self.M.createEvent() o3 = self.M.createEvent() o3.setId("test") - self.assert_( self.M.removeEvent(0) == o1 ) - self.assert_( self.M.getNumEvents() == 2 ) - self.assert_( self.M.removeEvent(0) == o2 ) - self.assert_( self.M.getNumEvents() == 1 ) - self.assert_( self.M.removeEvent("test") == o3 ) - self.assert_( self.M.getNumEvents() == 0 ) + self.assertTrue( self.M.removeEvent(0) == o1 ) + self.assertTrue( self.M.getNumEvents() == 2 ) + self.assertTrue( self.M.removeEvent(0) == o2 ) + self.assertTrue( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.removeEvent("test") == o3 ) + self.assertTrue( self.M.getNumEvents() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -742,12 +742,12 @@ def test_Model_removeFunctionDefinition(self): o2 = self.M.createFunctionDefinition() o3 = self.M.createFunctionDefinition() o3.setId("test") - self.assert_( self.M.removeFunctionDefinition(0) == o1 ) - self.assert_( self.M.getNumFunctionDefinitions() == 2 ) - self.assert_( self.M.removeFunctionDefinition(0) == o2 ) - self.assert_( self.M.getNumFunctionDefinitions() == 1 ) - self.assert_( self.M.removeFunctionDefinition("test") == o3 ) - self.assert_( self.M.getNumFunctionDefinitions() == 0 ) + self.assertTrue( self.M.removeFunctionDefinition(0) == o1 ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 2 ) + self.assertTrue( self.M.removeFunctionDefinition(0) == o2 ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 1 ) + self.assertTrue( self.M.removeFunctionDefinition("test") == o3 ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -758,12 +758,12 @@ def test_Model_removeInitialAssignment(self): o2 = self.M.createInitialAssignment() o3 = self.M.createInitialAssignment() o3.setSymbol("test") - self.assert_( self.M.removeInitialAssignment(0) == o1 ) - self.assert_( self.M.getNumInitialAssignments() == 2 ) - self.assert_( self.M.removeInitialAssignment(0) == o2 ) - self.assert_( self.M.getNumInitialAssignments() == 1 ) - self.assert_( self.M.removeInitialAssignment("test") == o3 ) - self.assert_( self.M.getNumInitialAssignments() == 0 ) + self.assertTrue( self.M.removeInitialAssignment(0) == o1 ) + self.assertTrue( self.M.getNumInitialAssignments() == 2 ) + self.assertTrue( self.M.removeInitialAssignment(0) == o2 ) + self.assertTrue( self.M.getNumInitialAssignments() == 1 ) + self.assertTrue( self.M.removeInitialAssignment("test") == o3 ) + self.assertTrue( self.M.getNumInitialAssignments() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -774,12 +774,12 @@ def test_Model_removeParameter(self): o2 = self.M.createParameter() o3 = self.M.createParameter() o3.setId("test") - self.assert_( self.M.removeParameter(0) == o1 ) - self.assert_( self.M.getNumParameters() == 2 ) - self.assert_( self.M.removeParameter(0) == o2 ) - self.assert_( self.M.getNumParameters() == 1 ) - self.assert_( self.M.removeParameter("test") == o3 ) - self.assert_( self.M.getNumParameters() == 0 ) + self.assertTrue( self.M.removeParameter(0) == o1 ) + self.assertTrue( self.M.getNumParameters() == 2 ) + self.assertTrue( self.M.removeParameter(0) == o2 ) + self.assertTrue( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.removeParameter("test") == o3 ) + self.assertTrue( self.M.getNumParameters() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -790,12 +790,12 @@ def test_Model_removeReaction(self): o2 = self.M.createReaction() o3 = self.M.createReaction() o3.setId("test") - self.assert_( self.M.removeReaction(0) == o1 ) - self.assert_( self.M.getNumReactions() == 2 ) - self.assert_( self.M.removeReaction(0) == o2 ) - self.assert_( self.M.getNumReactions() == 1 ) - self.assert_( self.M.removeReaction("test") == o3 ) - self.assert_( self.M.getNumReactions() == 0 ) + self.assertTrue( self.M.removeReaction(0) == o1 ) + self.assertTrue( self.M.getNumReactions() == 2 ) + self.assertTrue( self.M.removeReaction(0) == o2 ) + self.assertTrue( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.removeReaction("test") == o3 ) + self.assertTrue( self.M.getNumReactions() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -806,12 +806,12 @@ def test_Model_removeRule(self): o2 = self.M.createAlgebraicRule() o3 = self.M.createRateRule() o3.setVariable("test") - self.assert_( self.M.removeRule(0) == o1 ) - self.assert_( self.M.getNumRules() == 2 ) - self.assert_( self.M.removeRule(0) == o2 ) - self.assert_( self.M.getNumRules() == 1 ) - self.assert_( self.M.removeRule("test") == o3 ) - self.assert_( self.M.getNumRules() == 0 ) + self.assertTrue( self.M.removeRule(0) == o1 ) + self.assertTrue( self.M.getNumRules() == 2 ) + self.assertTrue( self.M.removeRule(0) == o2 ) + self.assertTrue( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.removeRule("test") == o3 ) + self.assertTrue( self.M.getNumRules() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -822,12 +822,12 @@ def test_Model_removeSpecies(self): o2 = self.M.createSpecies() o3 = self.M.createSpecies() o3.setId("test") - self.assert_( self.M.removeSpecies(0) == o1 ) - self.assert_( self.M.getNumSpecies() == 2 ) - self.assert_( self.M.removeSpecies(0) == o2 ) - self.assert_( self.M.getNumSpecies() == 1 ) - self.assert_( self.M.removeSpecies("test") == o3 ) - self.assert_( self.M.getNumSpecies() == 0 ) + self.assertTrue( self.M.removeSpecies(0) == o1 ) + self.assertTrue( self.M.getNumSpecies() == 2 ) + self.assertTrue( self.M.removeSpecies(0) == o2 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.removeSpecies("test") == o3 ) + self.assertTrue( self.M.getNumSpecies() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -838,12 +838,12 @@ def test_Model_removeSpeciesType(self): o2 = self.M.createSpeciesType() o3 = self.M.createSpeciesType() o3.setId("test") - self.assert_( self.M.removeSpeciesType(0) == o1 ) - self.assert_( self.M.getNumSpeciesTypes() == 2 ) - self.assert_( self.M.removeSpeciesType(0) == o2 ) - self.assert_( self.M.getNumSpeciesTypes() == 1 ) - self.assert_( self.M.removeSpeciesType("test") == o3 ) - self.assert_( self.M.getNumSpeciesTypes() == 0 ) + self.assertTrue( self.M.removeSpeciesType(0) == o1 ) + self.assertTrue( self.M.getNumSpeciesTypes() == 2 ) + self.assertTrue( self.M.removeSpeciesType(0) == o2 ) + self.assertTrue( self.M.getNumSpeciesTypes() == 1 ) + self.assertTrue( self.M.removeSpeciesType("test") == o3 ) + self.assertTrue( self.M.getNumSpeciesTypes() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -854,12 +854,12 @@ def test_Model_removeUnitDefinition(self): o2 = self.M.createUnitDefinition() o3 = self.M.createUnitDefinition() o3.setId("test") - self.assert_( self.M.removeUnitDefinition(0) == o1 ) - self.assert_( self.M.getNumUnitDefinitions() == 2 ) - self.assert_( self.M.removeUnitDefinition(0) == o2 ) - self.assert_( self.M.getNumUnitDefinitions() == 1 ) - self.assert_( self.M.removeUnitDefinition("test") == o3 ) - self.assert_( self.M.getNumUnitDefinitions() == 0 ) + self.assertTrue( self.M.removeUnitDefinition(0) == o1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 2 ) + self.assertTrue( self.M.removeUnitDefinition(0) == o2 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.removeUnitDefinition("test") == o3 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -868,12 +868,12 @@ def test_Model_removeUnitDefinition(self): def test_Model_setId(self): id = "Branch"; self.M.setId(id) - self.assert_(( id == self.M.getId() )) + self.assertTrue(( id == self.M.getId() )) self.assertEqual( True, self.M.isSetId() ) if (self.M.getId() == id): pass self.M.setId(self.M.getId()) - self.assert_(( id == self.M.getId() )) + self.assertTrue(( id == self.M.getId() )) self.M.setId("") self.assertEqual( False, self.M.isSetId() ) if (self.M.getId() != None): @@ -886,12 +886,12 @@ def test_Model_setId(self): def test_Model_setName(self): name = "My_Branch_Model"; self.M.setName(name) - self.assert_(( name == self.M.getName() )) + self.assertTrue(( name == self.M.getName() )) self.assertEqual( True, self.M.isSetName() ) if (self.M.getName() == name): pass self.M.setName(self.M.getName()) - self.assert_(( name == self.M.getName() )) + self.assertTrue(( name == self.M.getName() )) self.M.setName("") self.assertEqual( False, self.M.isSetName() ) if (self.M.getName() != None): @@ -910,17 +910,17 @@ def test_Model_setgetModelHistory(self): history.addCreator(mc) history.setCreatedDate(date) history.setModifiedDate(date) - self.assert_( self.M.isSetModelHistory() == False ) + self.assertTrue( self.M.isSetModelHistory() == False ) self.M.setModelHistory(history) - self.assert_( self.M.isSetModelHistory() == True ) + self.assertTrue( self.M.isSetModelHistory() == True ) newMC = history.getCreator(0) - self.assert_( newMC != None ) - self.assert_(( "Keating" == newMC.getFamilyName() )) - self.assert_(( "Sarah" == newMC.getGivenName() )) - self.assert_(( "sbml-team@caltech.edu" == newMC.getEmail() )) - self.assert_(( "UH" == newMC.getOrganisation() )) + self.assertTrue( newMC != None ) + self.assertTrue(( "Keating" == newMC.getFamilyName() )) + self.assertTrue(( "Sarah" == newMC.getGivenName() )) + self.assertTrue(( "sbml-team@caltech.edu" == newMC.getEmail() )) + self.assertTrue(( "UH" == newMC.getOrganisation() )) self.M.unsetModelHistory() - self.assert_( self.M.isSetModelHistory() == False ) + self.assertTrue( self.M.isSetModelHistory() == False ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList _dummyList = [ mc ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestModel_newSetters.py b/src/bindings/python/test/sbml/TestModel_newSetters.py index 52bfb95b86..c6729bcc74 100644 --- a/src/bindings/python/test/sbml/TestModel_newSetters.py +++ b/src/bindings/python/test/sbml/TestModel_newSetters.py @@ -53,11 +53,11 @@ def test_Model_addCompartment1(self): m = libsbml.Model(2,2) c = libsbml.Compartment(2,2) i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) c.setId( "c") i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumCompartments() == 1 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -67,8 +67,8 @@ def test_Model_addCompartment2(self): c = libsbml.Compartment(2,1) c.setId( "c") i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumCompartments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumCompartments() == 0 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -78,8 +78,8 @@ def test_Model_addCompartment3(self): c = libsbml.Compartment(1,2) c.setId( "c") i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumCompartments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumCompartments() == 0 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -88,8 +88,8 @@ def test_Model_addCompartment4(self): m = libsbml.Model(2,2) c = None i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumCompartments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumCompartments() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -100,11 +100,11 @@ def test_Model_addCompartment5(self): c1 = libsbml.Compartment(2,2) c1.setId( "c") i = m.addCompartment(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumCompartments() == 1 ) i = m.addCompartment(c1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumCompartments() == 1 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ c1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -114,11 +114,11 @@ def test_Model_addCompartmentType1(self): m = libsbml.Model(2,2) ct = libsbml.CompartmentType(2,2) i = m.addCompartmentType(ct) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ct.setId( "ct") i = m.addCompartmentType(ct) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) _dummyList = [ ct ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -128,8 +128,8 @@ def test_Model_addCompartmentType2(self): ct = libsbml.CompartmentType(2,3) ct.setId( "ct") i = m.addCompartmentType(ct) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumCompartmentTypes() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumCompartmentTypes() == 0 ) _dummyList = [ ct ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -138,8 +138,8 @@ def test_Model_addCompartmentType3(self): m = libsbml.Model(2,2) ct = None i = m.addCompartmentType(ct) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumCompartmentTypes() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumCompartmentTypes() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -150,11 +150,11 @@ def test_Model_addCompartmentType4(self): ct1 = libsbml.CompartmentType(2,2) ct1.setId( "ct") i = m.addCompartmentType(ct) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) i = m.addCompartmentType(ct1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) _dummyList = [ ct ]; _dummyList[:] = []; del _dummyList _dummyList = [ ct1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -164,11 +164,11 @@ def test_Model_addConstraint1(self): m = libsbml.Model(2,2) c = libsbml.Constraint(2,2) i = m.addConstraint(c) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) c.setMath(libsbml.parseFormula("a+b")) i = m.addConstraint(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumConstraints() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumConstraints() == 1 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -178,8 +178,8 @@ def test_Model_addConstraint2(self): c = libsbml.Constraint(2,3) c.setMath(libsbml.parseFormula("a+b")) i = m.addConstraint(c) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumConstraints() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumConstraints() == 0 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -188,8 +188,8 @@ def test_Model_addConstraint3(self): m = libsbml.Model(2,2) c = None i = m.addConstraint(c) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumConstraints() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumConstraints() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -198,15 +198,15 @@ def test_Model_addEvent1(self): e = libsbml.Event(2,2) t = libsbml.Trigger(2,2) i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) t.setMath(libsbml.parseFormula("true")) e.setTrigger(t) i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) e.createEventAssignment() i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumEvents() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumEvents() == 1 ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -219,8 +219,8 @@ def test_Model_addEvent2(self): e.setTrigger(t) e.createEventAssignment() i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumEvents() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumEvents() == 0 ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -229,8 +229,8 @@ def test_Model_addEvent3(self): m = libsbml.Model(2,2) e = None i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumEvents() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumEvents() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -247,11 +247,11 @@ def test_Model_addEvent4(self): e1.setTrigger(t) e1.createEventAssignment() i = m.addEvent(e) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumEvents() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumEvents() == 1 ) i = m.addEvent(e1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumEvents() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumEvents() == 1 ) _dummyList = [ e ]; _dummyList[:] = []; del _dummyList _dummyList = [ e1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -261,14 +261,14 @@ def test_Model_addFunctionDefinition1(self): m = libsbml.Model(2,2) fd = libsbml.FunctionDefinition(2,2) i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) fd.setId( "fd") i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) fd.setMath(libsbml.parseFormula("fd")) i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumFunctionDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumFunctionDefinitions() == 1 ) _dummyList = [ fd ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -279,8 +279,8 @@ def test_Model_addFunctionDefinition2(self): fd.setId( "fd") fd.setMath(libsbml.parseFormula("fd")) i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumFunctionDefinitions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumFunctionDefinitions() == 0 ) _dummyList = [ fd ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -289,8 +289,8 @@ def test_Model_addFunctionDefinition3(self): m = libsbml.Model(2,2) fd = None i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumFunctionDefinitions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumFunctionDefinitions() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -303,11 +303,11 @@ def test_Model_addFunctionDefinition4(self): fd1.setId( "fd") fd1.setMath(libsbml.parseFormula("fd")) i = m.addFunctionDefinition(fd) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumFunctionDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumFunctionDefinitions() == 1 ) i = m.addFunctionDefinition(fd1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumFunctionDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumFunctionDefinitions() == 1 ) _dummyList = [ fd ]; _dummyList[:] = []; del _dummyList _dummyList = [ fd1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -317,14 +317,14 @@ def test_Model_addInitialAssignment1(self): m = libsbml.Model(2,2) ia = libsbml.InitialAssignment(2,2) i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ia.setSymbol( "i") i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ia.setMath(libsbml.parseFormula("gg")) i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumInitialAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) _dummyList = [ ia ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -335,8 +335,8 @@ def test_Model_addInitialAssignment2(self): ia.setSymbol( "i") ia.setMath(libsbml.parseFormula("gg")) i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumInitialAssignments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumInitialAssignments() == 0 ) _dummyList = [ ia ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -345,8 +345,8 @@ def test_Model_addInitialAssignment3(self): m = libsbml.Model(2,2) ia = None i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumInitialAssignments() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumInitialAssignments() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -359,11 +359,11 @@ def test_Model_addInitialAssignment4(self): ia1.setSymbol( "ia") ia1.setMath(libsbml.parseFormula("a+b")) i = m.addInitialAssignment(ia) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumInitialAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) i = m.addInitialAssignment(ia1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumInitialAssignments() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) _dummyList = [ ia ]; _dummyList[:] = []; del _dummyList _dummyList = [ ia1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -373,11 +373,11 @@ def test_Model_addParameter1(self): m = libsbml.Model(2,2) p = libsbml.Parameter(2,2) i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setId( "p") i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -387,8 +387,8 @@ def test_Model_addParameter2(self): p = libsbml.Parameter(2,1) p.setId( "p") i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumParameters() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -398,8 +398,8 @@ def test_Model_addParameter3(self): p = libsbml.Parameter(1,2) p.setId( "p") i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumParameters() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -408,8 +408,8 @@ def test_Model_addParameter4(self): m = libsbml.Model(2,2) p = None i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumParameters() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumParameters() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -420,11 +420,11 @@ def test_Model_addParameter5(self): p1 = libsbml.Parameter(2,2) p1.setId( "p") i = m.addParameter(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumParameters() == 1 ) i = m.addParameter(p1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumParameters() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ p1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -434,11 +434,11 @@ def test_Model_addReaction1(self): m = libsbml.Model(2,2) r = libsbml.Reaction(2,2) i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) r.setId( "r") i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumReactions() == 1 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -448,8 +448,8 @@ def test_Model_addReaction2(self): r = libsbml.Reaction(2,1) r.setId( "r") i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumReactions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumReactions() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -459,8 +459,8 @@ def test_Model_addReaction3(self): r = libsbml.Reaction(1,2) r.setId( "r") i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumReactions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumReactions() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -469,8 +469,8 @@ def test_Model_addReaction4(self): m = libsbml.Model(2,2) r = None i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumReactions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumReactions() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -481,11 +481,11 @@ def test_Model_addReaction5(self): r1 = libsbml.Reaction(2,2) r1.setId( "r") i = m.addReaction(r) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumReactions() == 1 ) i = m.addReaction(r1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumReactions() == 1 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ r1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -495,14 +495,14 @@ def test_Model_addRule1(self): m = libsbml.Model(2,2) r = libsbml.AssignmentRule(2,2) i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) r.setVariable( "f") i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) r.setMath(libsbml.parseFormula("a-n")) i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumRules() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumRules() == 1 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -513,8 +513,8 @@ def test_Model_addRule2(self): r.setVariable( "f") r.setMath(libsbml.parseFormula("a-n")) i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumRules() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumRules() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -525,8 +525,8 @@ def test_Model_addRule3(self): r.setVariable( "f") r.setMath(libsbml.parseFormula("a-n")) i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumRules() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumRules() == 0 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -535,8 +535,8 @@ def test_Model_addRule4(self): m = libsbml.Model(2,2) r = None i = m.addRule(r) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumRules() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumRules() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -549,11 +549,11 @@ def test_Model_addRule5(self): ar1.setVariable( "ar") ar1.setMath(libsbml.parseFormula("a-j")) i = m.addRule(ar) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumRules() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumRules() == 1 ) i = m.addRule(ar1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumRules() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumRules() == 1 ) _dummyList = [ ar ]; _dummyList[:] = []; del _dummyList _dummyList = [ ar1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -563,14 +563,14 @@ def test_Model_addSpecies1(self): m = libsbml.Model(2,2) s = libsbml.Species(2,2) i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) s.setId( "s") i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) s.setCompartment( "c") i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumSpecies() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumSpecies() == 1 ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -581,8 +581,8 @@ def test_Model_addSpecies2(self): s.setId( "s") s.setCompartment( "c") i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumSpecies() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumSpecies() == 0 ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -594,8 +594,8 @@ def test_Model_addSpecies3(self): s.setCompartment( "c") s.setInitialAmount(2) i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumSpecies() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumSpecies() == 0 ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -604,8 +604,8 @@ def test_Model_addSpecies4(self): m = libsbml.Model(2,2) s = None i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumSpecies() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumSpecies() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -618,11 +618,11 @@ def test_Model_addSpecies5(self): s1.setId( "s") s1.setCompartment( "c") i = m.addSpecies(s) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumSpecies() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumSpecies() == 1 ) i = m.addSpecies(s1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumSpecies() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumSpecies() == 1 ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList _dummyList = [ s1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -632,11 +632,11 @@ def test_Model_addSpeciesType1(self): m = libsbml.Model(2,2) st = libsbml.SpeciesType(2,2) i = m.addSpeciesType(st) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) st.setId( "st") i = m.addSpeciesType(st) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) _dummyList = [ st ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -646,8 +646,8 @@ def test_Model_addSpeciesType2(self): st = libsbml.SpeciesType(2,3) st.setId( "st") i = m.addSpeciesType(st) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumSpeciesTypes() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumSpeciesTypes() == 0 ) _dummyList = [ st ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -656,8 +656,8 @@ def test_Model_addSpeciesType3(self): m = libsbml.Model(2,2) st = None i = m.addSpeciesType(st) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumSpeciesTypes() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumSpeciesTypes() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -668,11 +668,11 @@ def test_Model_addSpeciesType4(self): st1 = libsbml.SpeciesType(2,2) st1.setId( "st") i = m.addSpeciesType(st) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) i = m.addSpeciesType(st1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) _dummyList = [ st ]; _dummyList[:] = []; del _dummyList _dummyList = [ st1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -682,14 +682,14 @@ def test_Model_addUnitDefinition1(self): m = libsbml.Model(2,2) ud = libsbml.UnitDefinition(2,2) i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ud.createUnit() i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) ud.setId( "ud") i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumUnitDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) _dummyList = [ ud ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -700,8 +700,8 @@ def test_Model_addUnitDefinition2(self): ud.createUnit() ud.setId( "ud") i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumUnitDefinitions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumUnitDefinitions() == 0 ) _dummyList = [ ud ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -712,8 +712,8 @@ def test_Model_addUnitDefinition3(self): ud.createUnit() ud.setId( "ud") i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumUnitDefinitions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumUnitDefinitions() == 0 ) _dummyList = [ ud ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -722,8 +722,8 @@ def test_Model_addUnitDefinition4(self): m = libsbml.Model(2,2) ud = None i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumUnitDefinitions() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumUnitDefinitions() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -736,11 +736,11 @@ def test_Model_addUnitDefinition5(self): ud1.setId( "ud") ud1.createUnit() i = m.addUnitDefinition(ud) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumUnitDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) i = m.addUnitDefinition(ud1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumUnitDefinitions() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) _dummyList = [ ud ]; _dummyList[:] = []; del _dummyList _dummyList = [ ud1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -749,36 +749,36 @@ def test_Model_addUnitDefinition5(self): def test_Model_createCompartment(self): m = libsbml.Model(2,2) p = m.createCompartment() - self.assert_( m.getNumCompartments() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumCompartments() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createCompartmentType(self): m = libsbml.Model(2,2) p = m.createCompartmentType() - self.assert_( m.getNumCompartmentTypes() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createConstraint(self): m = libsbml.Model(2,2) p = m.createConstraint() - self.assert_( m.getNumConstraints() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumConstraints() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createEvent(self): m = libsbml.Model(2,2) p = m.createEvent() - self.assert_( m.getNumEvents() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumEvents() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -786,27 +786,27 @@ def test_Model_createEventAssignment(self): m = libsbml.Model(2,2) p = m.createEvent() ea = m.createEventAssignment() - self.assert_( p.getNumEventAssignments() == 1 ) - self.assert_( (ea).getLevel() == 2 ) - self.assert_( (ea).getVersion() == 2 ) + self.assertTrue( p.getNumEventAssignments() == 1 ) + self.assertTrue( (ea).getLevel() == 2 ) + self.assertTrue( (ea).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createFunctionDefinition(self): m = libsbml.Model(2,2) p = m.createFunctionDefinition() - self.assert_( m.getNumFunctionDefinitions() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumFunctionDefinitions() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createInitialAssignment(self): m = libsbml.Model(2,2) p = m.createInitialAssignment() - self.assert_( m.getNumInitialAssignments() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -814,9 +814,9 @@ def test_Model_createKineticLaw(self): m = libsbml.Model(2,2) p = m.createReaction() kl = m.createKineticLaw() - self.assert_( p.isSetKineticLaw() == True ) - self.assert_( (kl).getLevel() == 2 ) - self.assert_( (kl).getVersion() == 2 ) + self.assertTrue( p.isSetKineticLaw() == True ) + self.assertTrue( (kl).getLevel() == 2 ) + self.assertTrue( (kl).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -825,10 +825,10 @@ def test_Model_createKineticLawParameters(self): r = m.createReaction() kl = m.createKineticLaw() p = m.createKineticLawParameter() - self.assert_( r.isSetKineticLaw() == True ) - self.assert_( kl.getNumParameters() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( r.isSetKineticLaw() == True ) + self.assertTrue( kl.getNumParameters() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -836,18 +836,18 @@ def test_Model_createModifier(self): m = libsbml.Model(2,2) p = m.createReaction() sr = m.createModifier() - self.assert_( p.getNumModifiers() == 1 ) - self.assert_( (sr).getLevel() == 2 ) - self.assert_( (sr).getVersion() == 2 ) + self.assertTrue( p.getNumModifiers() == 1 ) + self.assertTrue( (sr).getLevel() == 2 ) + self.assertTrue( (sr).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createParameter(self): m = libsbml.Model(2,2) p = m.createParameter() - self.assert_( m.getNumParameters() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumParameters() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -855,9 +855,9 @@ def test_Model_createProduct(self): m = libsbml.Model(2,2) p = m.createReaction() sr = m.createProduct() - self.assert_( p.getNumProducts() == 1 ) - self.assert_( (sr).getLevel() == 2 ) - self.assert_( (sr).getVersion() == 2 ) + self.assertTrue( p.getNumProducts() == 1 ) + self.assertTrue( (sr).getLevel() == 2 ) + self.assertTrue( (sr).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -865,45 +865,45 @@ def test_Model_createReactant(self): m = libsbml.Model(2,2) p = m.createReaction() sr = m.createReactant() - self.assert_( p.getNumReactants() == 1 ) - self.assert_( (sr).getLevel() == 2 ) - self.assert_( (sr).getVersion() == 2 ) + self.assertTrue( p.getNumReactants() == 1 ) + self.assertTrue( (sr).getLevel() == 2 ) + self.assertTrue( (sr).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createReaction(self): m = libsbml.Model(2,2) p = m.createReaction() - self.assert_( m.getNumReactions() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumReactions() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createRule(self): m = libsbml.Model(2,2) p = m.createAssignmentRule() - self.assert_( m.getNumRules() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumRules() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createSpecies(self): m = libsbml.Model(2,2) p = m.createSpecies() - self.assert_( m.getNumSpecies() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumSpecies() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createSpeciesType(self): m = libsbml.Model(2,2) p = m.createSpeciesType() - self.assert_( m.getNumSpeciesTypes() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -911,47 +911,47 @@ def test_Model_createUnit(self): m = libsbml.Model(2,2) p = m.createUnitDefinition() u = m.createUnit() - self.assert_( p.getNumUnits() == 1 ) - self.assert_( (u).getLevel() == 2 ) - self.assert_( (u).getVersion() == 2 ) + self.assertTrue( p.getNumUnits() == 1 ) + self.assertTrue( (u).getLevel() == 2 ) + self.assertTrue( (u).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_createUnitDefinition(self): m = libsbml.Model(2,2) p = m.createUnitDefinition() - self.assert_( m.getNumUnitDefinitions() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Model_setId1(self): id = "1e1"; i = self.M.setId(id) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.M.isSetId() ) pass def test_Model_setId2(self): id = "e1"; i = self.M.setId(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.M.getId() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.M.getId() )) self.assertEqual( True, self.M.isSetId() ) i = self.M.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetId() ) pass def test_Model_setId3(self): id = "e1"; i = self.M.setId(id) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( id == self.M.getId() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( id == self.M.getId() )) self.assertEqual( True, self.M.isSetId() ) i = self.M.unsetId() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetId() ) pass @@ -959,10 +959,10 @@ def test_Model_setModelHistory1(self): self.M.setMetaId("_001") mh = libsbml.ModelHistory() i = self.M.setModelHistory(mh) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.M.isSetModelHistory() ) i = self.M.unsetModelHistory() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetModelHistory() ) _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass @@ -970,41 +970,41 @@ def test_Model_setModelHistory1(self): def test_Model_setModelHistory2(self): self.M.setMetaId("_001") i = self.M.setModelHistory(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetModelHistory() ) i = self.M.unsetModelHistory() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetModelHistory() ) pass def test_Model_setName1(self): name = "3Set_k2"; i = self.M.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.M.isSetName() ) pass def test_Model_setName2(self): name = "Set k2"; i = self.M.setName(name) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( name == self.M.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( name == self.M.getName() )) self.assertEqual( True, self.M.isSetName() ) i = self.M.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetName() ) pass def test_Model_setName3(self): i = self.M.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.M.isSetName() ) pass def test_Model_setName4(self): m = libsbml.Model(1,2) i = m.setName( "11dd") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, m.isSetName() ) pass diff --git a/src/bindings/python/test/sbml/TestModifierSpeciesReference.py b/src/bindings/python/test/sbml/TestModifierSpeciesReference.py index 36513fd4d8..df4d875426 100644 --- a/src/bindings/python/test/sbml/TestModifierSpeciesReference.py +++ b/src/bindings/python/test/sbml/TestModifierSpeciesReference.py @@ -50,11 +50,11 @@ def tearDown(self): pass def test_ModifierSpeciesReference_create(self): - self.assert_( self.MSR.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) - self.assert_( self.MSR.getMetaId() == "" ) - self.assert_( self.MSR.getNotes() == None ) - self.assert_( self.MSR.getAnnotation() == None ) - self.assert_( self.MSR.getSpecies() == "" ) + self.assertTrue( self.MSR.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) + self.assertTrue( self.MSR.getMetaId() == "" ) + self.assertTrue( self.MSR.getNotes() == None ) + self.assertTrue( self.MSR.getAnnotation() == None ) + self.assertTrue( self.MSR.getSpecies() == "" ) self.assertEqual( False, self.MSR.isSetSpecies() ) self.assertEqual( True, self.MSR.isModifier() ) pass @@ -65,15 +65,15 @@ def test_ModifierSpeciesReference_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.ModifierSpeciesReference(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) n = object.getNamespaces() - self.assert_( n.getLength() == 2 ) + self.assertTrue( n.getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -85,14 +85,14 @@ def test_ModifierSpeciesReference_setSpecies(self): species = "s1"; self.MSR.setSpecies(species) s = self.MSR.getSpecies() - self.assert_(( species == s )) + self.assertTrue(( species == s )) self.assertEqual( True, self.MSR.isSetSpecies() ) if (self.MSR.getSpecies() == species): pass s = self.MSR.getSpecies() self.MSR.setSpecies(s) s = self.MSR.getSpecies() - self.assert_(( species == s )) + self.assertTrue(( species == s )) self.MSR.setSpecies("") self.assertEqual( False, self.MSR.isSetSpecies() ) if (self.MSR.getSpecies() != None): diff --git a/src/bindings/python/test/sbml/TestParameter.py b/src/bindings/python/test/sbml/TestParameter.py index 87ffb66869..034059e2b3 100644 --- a/src/bindings/python/test/sbml/TestParameter.py +++ b/src/bindings/python/test/sbml/TestParameter.py @@ -50,14 +50,14 @@ def tearDown(self): pass def test_Parameter_create(self): - self.assert_( self.P.getTypeCode() == libsbml.SBML_PARAMETER ) - self.assert_( self.P.getMetaId() == "" ) - self.assert_( self.P.getNotes() == None ) - self.assert_( self.P.getAnnotation() == None ) - self.assert_( self.P.getId() == "" ) - self.assert_( self.P.getName() == "" ) - self.assert_( self.P.getUnits() == "" ) - self.assert_( self.P.getConstant() == True ) + self.assertTrue( self.P.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( self.P.getMetaId() == "" ) + self.assertTrue( self.P.getNotes() == None ) + self.assertTrue( self.P.getAnnotation() == None ) + self.assertTrue( self.P.getId() == "" ) + self.assertTrue( self.P.getName() == "" ) + self.assertTrue( self.P.getUnits() == "" ) + self.assertTrue( self.P.getConstant() == True ) self.assertEqual( False, self.P.isSetId() ) self.assertEqual( False, self.P.isSetName() ) self.assertEqual( False, self.P.isSetValue() ) @@ -71,14 +71,14 @@ def test_Parameter_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Parameter(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_PARAMETER ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_PARAMETER ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -89,12 +89,12 @@ def test_Parameter_free_NULL(self): def test_Parameter_setId(self): id = "Km1"; self.P.setId(id) - self.assert_(( id == self.P.getId() )) + self.assertTrue(( id == self.P.getId() )) self.assertEqual( True, self.P.isSetId() ) if (self.P.getId() == id): pass self.P.setId(self.P.getId()) - self.assert_(( id == self.P.getId() )) + self.assertTrue(( id == self.P.getId() )) self.P.setId("") self.assertEqual( False, self.P.isSetId() ) if (self.P.getId() != None): @@ -104,12 +104,12 @@ def test_Parameter_setId(self): def test_Parameter_setName(self): name = "Forward_Michaelis_Menten_Constant"; self.P.setName(name) - self.assert_(( name == self.P.getName() )) + self.assertTrue(( name == self.P.getName() )) self.assertEqual( True, self.P.isSetName() ) if (self.P.getName() == name): pass self.P.setName(self.P.getName()) - self.assert_(( name == self.P.getName() )) + self.assertTrue(( name == self.P.getName() )) self.P.setName("") self.assertEqual( False, self.P.isSetName() ) if (self.P.getName() != None): @@ -119,12 +119,12 @@ def test_Parameter_setName(self): def test_Parameter_setUnits(self): units = "second"; self.P.setUnits(units) - self.assert_(( units == self.P.getUnits() )) + self.assertTrue(( units == self.P.getUnits() )) self.assertEqual( True, self.P.isSetUnits() ) if (self.P.getUnits() == units): pass self.P.setUnits(self.P.getUnits()) - self.assert_(( units == self.P.getUnits() )) + self.assertTrue(( units == self.P.getUnits() )) self.P.setUnits("") self.assertEqual( False, self.P.isSetUnits() ) if (self.P.getUnits() != None): diff --git a/src/bindings/python/test/sbml/TestParameterRule.py b/src/bindings/python/test/sbml/TestParameterRule.py index a0b260557b..52c7968205 100644 --- a/src/bindings/python/test/sbml/TestParameterRule.py +++ b/src/bindings/python/test/sbml/TestParameterRule.py @@ -51,14 +51,14 @@ def tearDown(self): pass def test_ParameterRule_create(self): - self.assert_( self.PR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( self.PR.getL1TypeCode() == libsbml.SBML_PARAMETER_RULE ) - self.assert_( self.PR.getNotes() == None ) - self.assert_( self.PR.getAnnotation() == None ) - self.assert_( self.PR.getFormula() == "" ) - self.assert_( self.PR.getUnits() == "" ) - self.assert_( self.PR.getVariable() == "" ) - self.assert_( self.PR.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue( self.PR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( self.PR.getL1TypeCode() == libsbml.SBML_PARAMETER_RULE ) + self.assertTrue( self.PR.getNotes() == None ) + self.assertTrue( self.PR.getAnnotation() == None ) + self.assertTrue( self.PR.getFormula() == "" ) + self.assertTrue( self.PR.getUnits() == "" ) + self.assertTrue( self.PR.getVariable() == "" ) + self.assertTrue( self.PR.getType() == libsbml.RULE_TYPE_SCALAR ) self.assertEqual( False, self.PR.isSetVariable() ) self.assertEqual( False, self.PR.isSetUnits() ) pass @@ -70,13 +70,13 @@ def test_ParameterRule_free_NULL(self): def test_ParameterRule_setName(self): name = "cell"; self.PR.setVariable(name) - self.assert_(( name == self.PR.getVariable() )) + self.assertTrue(( name == self.PR.getVariable() )) self.assertEqual( True, self.PR.isSetVariable() ) if (self.PR.getVariable() == name): pass c = self.PR.getVariable() self.PR.setVariable(c) - self.assert_(( name == self.PR.getVariable() )) + self.assertTrue(( name == self.PR.getVariable() )) self.PR.setVariable("") self.assertEqual( False, self.PR.isSetVariable() ) if (self.PR.getVariable() != None): @@ -86,12 +86,12 @@ def test_ParameterRule_setName(self): def test_ParameterRule_setUnits(self): units = "cell"; self.PR.setUnits(units) - self.assert_(( units == self.PR.getUnits() )) + self.assertTrue(( units == self.PR.getUnits() )) self.assertEqual( True, self.PR.isSetUnits() ) if (self.PR.getUnits() == units): pass self.PR.setUnits(self.PR.getUnits()) - self.assert_(( units == self.PR.getUnits() )) + self.assertTrue(( units == self.PR.getUnits() )) self.PR.setUnits("") self.assertEqual( False, self.PR.isSetUnits() ) if (self.PR.getUnits() != None): diff --git a/src/bindings/python/test/sbml/TestParameter_newSetters.py b/src/bindings/python/test/sbml/TestParameter_newSetters.py index ec66e7e170..1193d31a2c 100644 --- a/src/bindings/python/test/sbml/TestParameter_newSetters.py +++ b/src/bindings/python/test/sbml/TestParameter_newSetters.py @@ -51,50 +51,50 @@ def tearDown(self): def test_Parameter_setConstant1(self): i = self.P.setConstant(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.P.getConstant() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.P.getConstant() == False ) pass def test_Parameter_setConstant2(self): p = libsbml.Parameter(2,2) i = p.setConstant(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( p.getConstant() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( p.getConstant() == False ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass def test_Parameter_setId1(self): i = self.P.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.P.isSetId() ) pass def test_Parameter_setId2(self): i = self.P.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.P.isSetId() ) - self.assert_(( "cell" == self.P.getId() )) + self.assertTrue(( "cell" == self.P.getId() )) i = self.P.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetId() ) pass def test_Parameter_setName1(self): i = self.P.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.P.isSetName() ) i = self.P.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetName() ) pass def test_Parameter_setName2(self): p = libsbml.Parameter(2,2) i = p.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, p.isSetName() ) i = p.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, p.isSetName() ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass @@ -102,52 +102,52 @@ def test_Parameter_setName2(self): def test_Parameter_setName3(self): p = libsbml.Parameter(1,2) i = p.setName( "11pp") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, p.isSetName() ) i = p.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, p.isSetName() ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass def test_Parameter_setUnits1(self): i = self.P.setUnits( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.P.isSetUnits() ) i = self.P.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetUnits() ) pass def test_Parameter_setUnits2(self): i = self.P.setUnits( "litre") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.P.isSetUnits() ) i = self.P.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetUnits() ) pass def test_Parameter_setUnits3(self): i = self.P.setUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetUnits() ) pass def test_Parameter_setValue1(self): i = self.P.setValue(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.P.getValue() == 2.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.P.getValue() == 2.0 ) self.assertEqual( True, self.P.isSetValue() ) i = self.P.unsetValue() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.P.isSetValue() ) pass def test_Parameter_setValue2(self): p = libsbml.Parameter(2,2) i = p.unsetValue() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, p.isSetValue() ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestPriority.py b/src/bindings/python/test/sbml/TestPriority.py index 0393643cae..6ab746ae1b 100644 --- a/src/bindings/python/test/sbml/TestPriority.py +++ b/src/bindings/python/test/sbml/TestPriority.py @@ -50,11 +50,11 @@ def tearDown(self): pass def test_Priority_create(self): - self.assert_( self.P.getTypeCode() == libsbml.SBML_PRIORITY ) - self.assert_( self.P.getMetaId() == "" ) - self.assert_( self.P.getNotes() == None ) - self.assert_( self.P.getAnnotation() == None ) - self.assert_( self.P.getMath() == None ) + self.assertTrue( self.P.getTypeCode() == libsbml.SBML_PRIORITY ) + self.assertTrue( self.P.getMetaId() == "" ) + self.assertTrue( self.P.getNotes() == None ) + self.assertTrue( self.P.getAnnotation() == None ) + self.assertTrue( self.P.getMath() == None ) pass def test_Priority_createWithNS(self): @@ -63,14 +63,14 @@ def test_Priority_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) object = libsbml.Priority(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_PRIORITY ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 3 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_PRIORITY ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 3 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -82,18 +82,18 @@ def test_Priority_setMath(self): math = libsbml.parseFormula("lambda(x, x^3)") self.P.setMath(math) math1 = self.P.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.P.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.P.getMath() != math ) self.assertEqual( True, self.P.isSetMath() ) self.P.setMath(self.P.getMath()) math1 = self.P.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) self.P.setMath(None) self.assertEqual( False, self.P.isSetMath() ) if (self.P.getMath() != None): @@ -103,12 +103,12 @@ def test_Priority_setMath(self): def test_Priority_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.P.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.P.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.P.getMath() != math ) self.assertEqual( True, self.P.isSetMath() ) i = self.P.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.P.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.P.getMath() == None ) self.assertEqual( False, self.P.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -116,7 +116,7 @@ def test_Priority_setMath1(self): def test_Priority_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.P.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.P.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestRateRule.py b/src/bindings/python/test/sbml/TestRateRule.py index c88f847bbe..bfeca2ec78 100644 --- a/src/bindings/python/test/sbml/TestRateRule.py +++ b/src/bindings/python/test/sbml/TestRateRule.py @@ -50,14 +50,14 @@ def tearDown(self): pass def test_RateRule_create(self): - self.assert_( self.RR.getTypeCode() == libsbml.SBML_RATE_RULE ) - self.assert_( self.RR.getMetaId() == "" ) - self.assert_( self.RR.getNotes() == None ) - self.assert_( self.RR.getAnnotation() == None ) - self.assert_( self.RR.getFormula() == "" ) - self.assert_( self.RR.getMath() == None ) - self.assert_( self.RR.getVariable() == "" ) - self.assert_( self.RR.getType() == libsbml.RULE_TYPE_RATE ) + self.assertTrue( self.RR.getTypeCode() == libsbml.SBML_RATE_RULE ) + self.assertTrue( self.RR.getMetaId() == "" ) + self.assertTrue( self.RR.getNotes() == None ) + self.assertTrue( self.RR.getAnnotation() == None ) + self.assertTrue( self.RR.getFormula() == "" ) + self.assertTrue( self.RR.getMath() == None ) + self.assertTrue( self.RR.getVariable() == "" ) + self.assertTrue( self.RR.getType() == libsbml.RULE_TYPE_RATE ) pass def test_RateRule_createWithNS(self): @@ -66,14 +66,14 @@ def test_RateRule_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.RateRule(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_RATE_RULE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_RATE_RULE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -84,12 +84,12 @@ def test_RateRule_free_NULL(self): def test_RateRule_setVariable(self): variable = "x"; self.RR.setVariable(variable) - self.assert_(( variable == self.RR.getVariable() )) + self.assertTrue(( variable == self.RR.getVariable() )) self.assertEqual( True, self.RR.isSetVariable() ) if (self.RR.getVariable() == variable): pass self.RR.setVariable(self.RR.getVariable()) - self.assert_(( variable == self.RR.getVariable() )) + self.assertTrue(( variable == self.RR.getVariable() )) self.RR.setVariable("") self.assertEqual( False, self.RR.isSetVariable() ) if (self.RR.getVariable() != None): diff --git a/src/bindings/python/test/sbml/TestReaction.py b/src/bindings/python/test/sbml/TestReaction.py index aa4ed30777..6bf6e455d9 100644 --- a/src/bindings/python/test/sbml/TestReaction.py +++ b/src/bindings/python/test/sbml/TestReaction.py @@ -53,9 +53,9 @@ def test_Reaction_addProduct(self): sr = libsbml.SpeciesReference(2,4) sr.setSpecies( "s") self.R.addProduct(sr) - self.assert_( self.R.getNumReactants() == 0 ) - self.assert_( self.R.getNumProducts() == 1 ) - self.assert_( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getNumReactants() == 0 ) + self.assertTrue( self.R.getNumProducts() == 1 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) _dummyList = [ sr ]; _dummyList[:] = []; del _dummyList pass @@ -63,30 +63,30 @@ def test_Reaction_addReactant(self): sr = libsbml.SpeciesReference(2,4) sr.setSpecies( "s") self.R.addReactant(sr) - self.assert_( self.R.getNumReactants() == 1 ) - self.assert_( self.R.getNumProducts() == 0 ) - self.assert_( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getNumReactants() == 1 ) + self.assertTrue( self.R.getNumProducts() == 0 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) _dummyList = [ sr ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_create(self): - self.assert_( self.R.getTypeCode() == libsbml.SBML_REACTION ) - self.assert_( self.R.getMetaId() == "" ) - self.assert_( self.R.getNotes() == None ) - self.assert_( self.R.getAnnotation() == None ) - self.assert_( self.R.getId() == "" ) - self.assert_( self.R.getName() == "" ) - self.assert_( self.R.getKineticLaw() == None ) - self.assert_( self.R.getReversible() != False ) - self.assert_( self.R.getFast() == False ) + self.assertTrue( self.R.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( self.R.getMetaId() == "" ) + self.assertTrue( self.R.getNotes() == None ) + self.assertTrue( self.R.getAnnotation() == None ) + self.assertTrue( self.R.getId() == "" ) + self.assertTrue( self.R.getName() == "" ) + self.assertTrue( self.R.getKineticLaw() == None ) + self.assertTrue( self.R.getReversible() != False ) + self.assertTrue( self.R.getFast() == False ) self.assertEqual( False, self.R.isSetId() ) self.assertEqual( False, self.R.isSetName() ) self.assertEqual( False, self.R.isSetKineticLaw() ) self.assertEqual( False, self.R.isSetFast() ) self.assertEqual( True, self.R.isSetReversible() ) - self.assert_( self.R.getNumReactants() == 0 ) - self.assert_( self.R.getNumProducts() == 0 ) - self.assert_( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getNumReactants() == 0 ) + self.assertTrue( self.R.getNumProducts() == 0 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) pass def test_Reaction_createWithNS(self): @@ -95,14 +95,14 @@ def test_Reaction_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Reaction(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_REACTION ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_REACTION ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -119,13 +119,13 @@ def test_Reaction_getProduct(self): self.R.addProduct(sr2) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList - self.assert_( self.R.getNumReactants() == 0 ) - self.assert_( self.R.getNumProducts() == 2 ) - self.assert_( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getNumReactants() == 0 ) + self.assertTrue( self.R.getNumProducts() == 2 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) sr1 = self.R.getProduct(0) sr2 = self.R.getProduct(1) - self.assert_(( "P1" == sr1.getSpecies() )) - self.assert_(( "P2" == sr2.getSpecies() )) + self.assertTrue(( "P1" == sr1.getSpecies() )) + self.assertTrue(( "P2" == sr2.getSpecies() )) pass def test_Reaction_getProductById(self): @@ -135,12 +135,12 @@ def test_Reaction_getProductById(self): sr2.setSpecies( "P1") self.R.addProduct(sr1) self.R.addProduct(sr2) - self.assert_( self.R.getNumReactants() == 0 ) - self.assert_( self.R.getNumProducts() == 2 ) - self.assert_( self.R.getNumModifiers() == 0 ) - self.assert_( self.R.getProduct( "P1") != sr1 ) - self.assert_( self.R.getProduct( "P2") != sr2 ) - self.assert_( self.R.getProduct( "P3") == None ) + self.assertTrue( self.R.getNumReactants() == 0 ) + self.assertTrue( self.R.getNumProducts() == 2 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getProduct( "P1") != sr1 ) + self.assertTrue( self.R.getProduct( "P2") != sr2 ) + self.assertTrue( self.R.getProduct( "P3") == None ) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList pass @@ -154,13 +154,13 @@ def test_Reaction_getReactant(self): self.R.addReactant(sr2) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList - self.assert_( self.R.getNumReactants() == 2 ) - self.assert_( self.R.getNumProducts() == 0 ) - self.assert_( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getNumReactants() == 2 ) + self.assertTrue( self.R.getNumProducts() == 0 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) sr1 = self.R.getReactant(0) sr2 = self.R.getReactant(1) - self.assert_(( "R1" == sr1.getSpecies() )) - self.assert_(( "R2" == sr2.getSpecies() )) + self.assertTrue(( "R1" == sr1.getSpecies() )) + self.assertTrue(( "R2" == sr2.getSpecies() )) pass def test_Reaction_getReactantById(self): @@ -170,12 +170,12 @@ def test_Reaction_getReactantById(self): sr2.setSpecies( "R2") self.R.addReactant(sr1) self.R.addReactant(sr2) - self.assert_( self.R.getNumReactants() == 2 ) - self.assert_( self.R.getNumProducts() == 0 ) - self.assert_( self.R.getNumModifiers() == 0 ) - self.assert_( self.R.getReactant( "R1") != sr1 ) - self.assert_( self.R.getReactant( "R2") != sr2 ) - self.assert_( self.R.getReactant( "R3") == None ) + self.assertTrue( self.R.getNumReactants() == 2 ) + self.assertTrue( self.R.getNumProducts() == 0 ) + self.assertTrue( self.R.getNumModifiers() == 0 ) + self.assertTrue( self.R.getReactant( "R1") != sr1 ) + self.assertTrue( self.R.getReactant( "R2") != sr2 ) + self.assertTrue( self.R.getReactant( "R3") == None ) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList pass @@ -185,12 +185,12 @@ def test_Reaction_removeProduct(self): o2 = self.R.createProduct() o3 = self.R.createProduct() o3.setSpecies("test") - self.assert_( self.R.removeProduct(0) == o1 ) - self.assert_( self.R.getNumProducts() == 2 ) - self.assert_( self.R.removeProduct(0) == o2 ) - self.assert_( self.R.getNumProducts() == 1 ) - self.assert_( self.R.removeProduct("test") == o3 ) - self.assert_( self.R.getNumProducts() == 0 ) + self.assertTrue( self.R.removeProduct(0) == o1 ) + self.assertTrue( self.R.getNumProducts() == 2 ) + self.assertTrue( self.R.removeProduct(0) == o2 ) + self.assertTrue( self.R.getNumProducts() == 1 ) + self.assertTrue( self.R.removeProduct("test") == o3 ) + self.assertTrue( self.R.getNumProducts() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -201,12 +201,12 @@ def test_Reaction_removeReactant(self): o2 = self.R.createReactant() o3 = self.R.createReactant() o3.setSpecies("test") - self.assert_( self.R.removeReactant(0) == o1 ) - self.assert_( self.R.getNumReactants() == 2 ) - self.assert_( self.R.removeReactant(0) == o2 ) - self.assert_( self.R.getNumReactants() == 1 ) - self.assert_( self.R.removeReactant("test") == o3 ) - self.assert_( self.R.getNumReactants() == 0 ) + self.assertTrue( self.R.removeReactant(0) == o1 ) + self.assertTrue( self.R.getNumReactants() == 2 ) + self.assertTrue( self.R.removeReactant(0) == o2 ) + self.assertTrue( self.R.getNumReactants() == 1 ) + self.assertTrue( self.R.removeReactant("test") == o3 ) + self.assertTrue( self.R.getNumReactants() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -215,12 +215,12 @@ def test_Reaction_removeReactant(self): def test_Reaction_setId(self): id = "J1"; self.R.setId(id) - self.assert_(( id == self.R.getId() )) + self.assertTrue(( id == self.R.getId() )) self.assertEqual( True, self.R.isSetId() ) if (self.R.getId() == id): pass self.R.setId(self.R.getId()) - self.assert_(( id == self.R.getId() )) + self.assertTrue(( id == self.R.getId() )) self.R.setId("") self.assertEqual( False, self.R.isSetId() ) if (self.R.getId() != None): @@ -230,12 +230,12 @@ def test_Reaction_setId(self): def test_Reaction_setName(self): name = "MapK_Cascade"; self.R.setName(name) - self.assert_(( name == self.R.getName() )) + self.assertTrue(( name == self.R.getName() )) self.assertEqual( True, self.R.isSetName() ) if (self.R.getName() == name): pass self.R.setName(self.R.getName()) - self.assert_(( name == self.R.getName() )) + self.assertTrue(( name == self.R.getName() )) self.R.setName("") self.assertEqual( False, self.R.isSetName() ) if (self.R.getName() != None): diff --git a/src/bindings/python/test/sbml/TestReaction_newSetters.py b/src/bindings/python/test/sbml/TestReaction_newSetters.py index 298fbf2e51..e5220f0fef 100644 --- a/src/bindings/python/test/sbml/TestReaction_newSetters.py +++ b/src/bindings/python/test/sbml/TestReaction_newSetters.py @@ -56,15 +56,15 @@ def test_Reaction_addProduct1(self): p1.setSpecies( "k") p1.setId( "k1") i = m.addProduct(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setSpecies( "k") p.setId( "k1") i = m.addProduct(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumProducts() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumProducts() == 1 ) i = m.addProduct(p1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumProducts() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumProducts() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ p1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -75,8 +75,8 @@ def test_Reaction_addProduct2(self): p = libsbml.SpeciesReference(2,1) p.setSpecies( "k") i = m.addProduct(p) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumProducts() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumProducts() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -86,8 +86,8 @@ def test_Reaction_addProduct3(self): p = libsbml.SpeciesReference(1,2) p.setSpecies( "k") i = m.addProduct(p) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumProducts() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumProducts() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -96,8 +96,8 @@ def test_Reaction_addProduct4(self): m = libsbml.Reaction(2,2) p = None i = m.addProduct(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumProducts() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumProducts() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -108,15 +108,15 @@ def test_Reaction_addReactant1(self): p1.setSpecies( "k") p1.setId( "k1") i = m.addReactant(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setSpecies( "k") p.setId( "k1") i = m.addReactant(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumReactants() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumReactants() == 1 ) i = m.addReactant(p1) - self.assert_( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) - self.assert_( m.getNumReactants() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID ) + self.assertTrue( m.getNumReactants() == 1 ) _dummyList = [ p1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList @@ -127,8 +127,8 @@ def test_Reaction_addReactant2(self): p = libsbml.SpeciesReference(2,1) p.setSpecies( "k") i = m.addReactant(p) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumReactants() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumReactants() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -138,8 +138,8 @@ def test_Reaction_addReactant3(self): p = libsbml.SpeciesReference(1,2) p.setSpecies( "k") i = m.addReactant(p) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumReactants() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumReactants() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -148,74 +148,74 @@ def test_Reaction_addReactant4(self): m = libsbml.Reaction(2,2) p = None i = m.addReactant(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumReactants() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumReactants() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_createKineticLaw(self): r = libsbml.Reaction(2,2) kl = r.createKineticLaw() - self.assert_( r.isSetKineticLaw() == True ) - self.assert_( (kl).getLevel() == 2 ) - self.assert_( (kl).getVersion() == 2 ) + self.assertTrue( r.isSetKineticLaw() == True ) + self.assertTrue( (kl).getLevel() == 2 ) + self.assertTrue( (kl).getVersion() == 2 ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_createProduct(self): m = libsbml.Reaction(2,2) p = m.createProduct() - self.assert_( m.getNumProducts() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumProducts() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_createReactant(self): m = libsbml.Reaction(2,2) p = m.createReactant() - self.assert_( m.getNumReactants() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumReactants() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_setFast1(self): i = self.R.setFast(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.R.getFast() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.R.getFast() == True ) self.assertEqual( True, self.R.isSetFast() ) i = self.R.setFast(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.R.getFast() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.R.getFast() == False ) self.assertEqual( True, self.R.isSetFast() ) i = self.R.unsetFast() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.R.getFast() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.R.getFast() == False ) self.assertEqual( False, self.R.isSetFast() ) pass def test_Reaction_setFast2(self): R1 = libsbml.Reaction(2,4) i = R1.unsetFast() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( R1.getFast() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( R1.getFast() == False ) self.assertEqual( False, R1.isSetFast() ) pass def test_Reaction_setId1(self): i = self.R.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.R.isSetId() ) pass def test_Reaction_setId2(self): i = self.R.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.R.isSetId() ) - self.assert_(( "cell" == self.R.getId() )) + self.assertTrue(( "cell" == self.R.getId() )) i = self.R.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetId() ) pass @@ -223,7 +223,7 @@ def test_Reaction_setKineticLaw1(self): kl = libsbml.KineticLaw(2,1) kl.setMath(libsbml.parseFormula("1")) i = self.R.setKineticLaw(kl) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) self.assertEqual( False, self.R.isSetKineticLaw() ) _dummyList = [ kl ]; _dummyList[:] = []; del _dummyList pass @@ -232,7 +232,7 @@ def test_Reaction_setKineticLaw2(self): kl = libsbml.KineticLaw(1,1) kl.setMath(libsbml.parseFormula("1")) i = self.R.setKineticLaw(kl) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) self.assertEqual( False, self.R.isSetKineticLaw() ) _dummyList = [ kl ]; _dummyList[:] = []; del _dummyList pass @@ -241,36 +241,36 @@ def test_Reaction_setKineticLaw3(self): kl = libsbml.KineticLaw(1,2) kl.setMath(libsbml.parseFormula("1")) i = self.R.setKineticLaw(kl) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.R.isSetKineticLaw() ) _dummyList = [ kl ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_setKineticLaw4(self): i = self.R.setKineticLaw(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetKineticLaw() ) i = self.R.unsetKineticLaw() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetKineticLaw() ) pass def test_Reaction_setName1(self): i = self.R.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.R.isSetName() ) i = self.R.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetName() ) pass def test_Reaction_setName2(self): p = libsbml.Reaction(2,2) i = p.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, p.isSetName() ) i = p.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, p.isSetName() ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass @@ -278,18 +278,18 @@ def test_Reaction_setName2(self): def test_Reaction_setName3(self): p = libsbml.Reaction(2,2) i = p.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, p.isSetName() ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_setReversible1(self): i = self.R.setReversible(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.R.getReversible() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.R.getReversible() == True ) i = self.R.setReversible(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.R.getReversible() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.R.getReversible() == False ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestReadFromFile1.py b/src/bindings/python/test/sbml/TestReadFromFile1.py index ab1db81dc4..fc08d1db93 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile1.py +++ b/src/bindings/python/test/sbml/TestReadFromFile1.py @@ -42,115 +42,115 @@ def test_read_l1v1_branch(self): d = libsbml.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_(( "Branch" == m.getName() )) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue(( "Branch" == m.getName() )) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_(( "compartmentOne" == c.getName() )) - self.assert_( c.getVolume() == 1 ) + self.assertTrue(( "compartmentOne" == c.getName() )) + self.assertTrue( c.getVolume() == 1 ) ud = c.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( m.getNumSpecies() == 4 ) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( m.getNumSpecies() == 4 ) s = m.getSpecies(0) - self.assert_(( "S1" == s.getName() )) - self.assert_(( "compartmentOne" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "S1" == s.getName() )) + self.assertTrue(( "compartmentOne" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == False ) ud = s.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 2 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( ud.getNumUnits() == 2 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) s = m.getSpecies(1) - self.assert_(( "X0" == s.getName() )) - self.assert_(( "compartmentOne" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == True ) + self.assertTrue(( "X0" == s.getName() )) + self.assertTrue(( "compartmentOne" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == True ) s = m.getSpecies(2) - self.assert_(( "X1" == s.getName() )) - self.assert_(( "compartmentOne" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == True ) + self.assertTrue(( "X1" == s.getName() )) + self.assertTrue(( "compartmentOne" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == True ) s = m.getSpecies(3) - self.assert_(( "X2" == s.getName() )) - self.assert_(( "compartmentOne" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == True ) - self.assert_( m.getNumReactions() == 3 ) + self.assertTrue(( "X2" == s.getName() )) + self.assertTrue(( "compartmentOne" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == True ) + self.assertTrue( m.getNumReactions() == 3 ) r = m.getReaction(0) - self.assert_(( "reaction_1" == r.getName() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "reaction_1" == r.getName() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getFast() == False ) ud = r.getKineticLaw().getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 2 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) - self.assert_( r.getKineticLaw().containsUndeclaredUnits() == True ) + self.assertTrue( ud.getNumUnits() == 2 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( r.getKineticLaw().containsUndeclaredUnits() == True ) r = m.getReaction(1) - self.assert_(( "reaction_2" == r.getName() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "reaction_2" == r.getName() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(2) - self.assert_(( "reaction_3" == r.getName() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "reaction_3" == r.getName() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(0) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "X0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "S1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "S1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "k1 * X0" == kl.getFormula() )) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue(( "k1 * X0" == kl.getFormula() )) + self.assertTrue( kl.getNumParameters() == 1 ) p = kl.getParameter(0) - self.assert_(( "k1" == p.getName() )) - self.assert_( p.getValue() == 0 ) + self.assertTrue(( "k1" == p.getName() )) + self.assertTrue( p.getValue() == 0 ) r = m.getReaction(1) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "S1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "S1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "X1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "k2 * S1" == kl.getFormula() )) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue(( "k2 * S1" == kl.getFormula() )) + self.assertTrue( kl.getNumParameters() == 1 ) p = kl.getParameter(0) - self.assert_(( "k2" == p.getName() )) - self.assert_( p.getValue() == 0 ) + self.assertTrue(( "k2" == p.getName() )) + self.assertTrue( p.getValue() == 0 ) r = m.getReaction(2) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "S1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "S1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "X2" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X2" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "k3 * S1" == kl.getFormula() )) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue(( "k3 * S1" == kl.getFormula() )) + self.assertTrue( kl.getNumParameters() == 1 ) p = kl.getParameter(0) - self.assert_(( "k3" == p.getName() )) - self.assert_( p.getValue() == 0 ) + self.assertTrue(( "k3" == p.getName() )) + self.assertTrue( p.getValue() == 0 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile2.py b/src/bindings/python/test/sbml/TestReadFromFile2.py index aae5376eaf..bcc244a1c7 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile2.py +++ b/src/bindings/python/test/sbml/TestReadFromFile2.py @@ -114,136 +114,136 @@ def test_read_l1v1_units(self): d = libsbml.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_( m.getNumUnitDefinitions() == 2 ) + self.assertTrue( m.getNumUnitDefinitions() == 2 ) ud = m.getUnitDefinition(0) - self.assert_(( "substance" == ud.getName() )) + self.assertTrue(( "substance" == ud.getName() )) ud = m.getUnitDefinition(1) - self.assert_(( "mls" == ud.getName() )) + self.assertTrue(( "mls" == ud.getName() )) ud = m.getUnitDefinition(0) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == -3 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == -3 ) ud = m.getUnitDefinition(1) - self.assert_( ud.getNumUnits() == 3 ) + self.assertTrue( ud.getNumUnits() == 3 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == -3 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == -3 ) u = ud.getUnit(1) - self.assert_( u.getKind() == libsbml.UNIT_KIND_LITER ) - self.assert_( u.getExponent() == -1 ) - self.assert_( u.getScale() == 0 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_LITER ) + self.assertTrue( u.getExponent() == -1 ) + self.assertTrue( u.getScale() == 0 ) u = ud.getUnit(2) - self.assert_( u.getKind() == libsbml.UNIT_KIND_SECOND ) - self.assert_( u.getExponent() == -1 ) - self.assert_( u.getScale() == 0 ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_SECOND ) + self.assertTrue( u.getExponent() == -1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_(( "cell" == c.getName() )) - self.assert_( m.getNumSpecies() == 4 ) + self.assertTrue(( "cell" == c.getName() )) + self.assertTrue( m.getNumSpecies() == 4 ) s = m.getSpecies(0) - self.assert_(( "x0" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "x0" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) ud = s.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 2 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(0).getScale() == -3 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( ud.getNumUnits() == 2 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(0).getScale() == -3 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) s = m.getSpecies(1) - self.assert_(( "x1" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "x1" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(2) - self.assert_(( "s1" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "s1" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(3) - self.assert_(( "s2" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( m.getNumParameters() == 2 ) + self.assertTrue(( "s2" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( m.getNumParameters() == 2 ) p = m.getParameter(0) - self.assert_(( "vm" == p.getName() )) - self.assert_(( "mls" == p.getUnits() )) - self.assert_( p.getValue() == 2 ) + self.assertTrue(( "vm" == p.getName() )) + self.assertTrue(( "mls" == p.getUnits() )) + self.assertTrue( p.getValue() == 2 ) ud = p.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 3 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(0).getScale() == -3 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITER ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) - self.assert_( ud.getUnit(2).getKind() == libsbml.UNIT_KIND_SECOND ) - self.assert_( ud.getUnit(2).getExponent() == -1 ) + self.assertTrue( ud.getNumUnits() == 3 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(0).getScale() == -3 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITER ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( ud.getUnit(2).getKind() == libsbml.UNIT_KIND_SECOND ) + self.assertTrue( ud.getUnit(2).getExponent() == -1 ) p = m.getParameter(1) - self.assert_(( "km" == p.getName() )) - self.assert_( p.getValue() == 2 ) + self.assertTrue(( "km" == p.getName() )) + self.assertTrue( p.getValue() == 2 ) ud = p.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 0 ) - self.assert_( m.getNumReactions() == 3 ) + self.assertTrue( ud.getNumUnits() == 0 ) + self.assertTrue( m.getNumReactions() == 3 ) r = m.getReaction(0) - self.assert_(( "v1" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "v1" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(1) - self.assert_(( "v2" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "v2" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(2) - self.assert_(( "v3" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "v3" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(0) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "x0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "x0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "s1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "cell * (vm * s1)/(km + s1)" == kl.getFormula() )) + self.assertTrue(( "cell * (vm * s1)/(km + s1)" == kl.getFormula() )) r = m.getReaction(1) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "s1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "s2" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s2" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "cell * (vm * s2)/(km + s2)" == kl.getFormula() )) + self.assertTrue(( "cell * (vm * s2)/(km + s2)" == kl.getFormula() )) r = m.getReaction(2) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "s2" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s2" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "x1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "x1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "cell * (vm * s1)/(km + s1)" == kl.getFormula() )) + self.assertTrue(( "cell * (vm * s1)/(km + s1)" == kl.getFormula() )) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile3.py b/src/bindings/python/test/sbml/TestReadFromFile3.py index 3552782053..71fd7352c8 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile3.py +++ b/src/bindings/python/test/sbml/TestReadFromFile3.py @@ -42,115 +42,115 @@ def test_read_l1v1_rules(self): d = libsbml.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_(( "cell" == c.getName() )) - self.assert_( c.getVolume() == 1 ) - self.assert_( m.getNumSpecies() == 6 ) + self.assertTrue(( "cell" == c.getName() )) + self.assertTrue( c.getVolume() == 1 ) + self.assertTrue( m.getNumSpecies() == 6 ) s = m.getSpecies(0) - self.assert_(( "s1" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 4 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "s1" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 4 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(1) - self.assert_(( "s2" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 2 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "s2" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 2 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(2) - self.assert_(( "x0" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "x0" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(3) - self.assert_(( "x1" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "x1" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(4) - self.assert_(( "x2" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue(( "x2" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) s = m.getSpecies(5) - self.assert_(( "x3" == s.getName() )) - self.assert_(( "cell" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( m.getNumParameters() == 7 ) + self.assertTrue(( "x3" == s.getName() )) + self.assertTrue(( "cell" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( m.getNumParameters() == 7 ) p = m.getParameter(0) - self.assert_(( "k1" == p.getName() )) - self.assert_( p.getValue() == 1.2 ) + self.assertTrue(( "k1" == p.getName() )) + self.assertTrue( p.getValue() == 1.2 ) p = m.getParameter(1) - self.assert_(( "k2" == p.getName() )) - self.assert_( p.getValue() == 1000 ) + self.assertTrue(( "k2" == p.getName() )) + self.assertTrue( p.getValue() == 1000 ) p = m.getParameter(2) - self.assert_(( "k3" == p.getName() )) - self.assert_( p.getValue() == 3000 ) + self.assertTrue(( "k3" == p.getName() )) + self.assertTrue( p.getValue() == 3000 ) p = m.getParameter(3) - self.assert_(( "k4" == p.getName() )) - self.assert_( p.getValue() == 4.5 ) - self.assert_( m.getNumRules() == 4 ) + self.assertTrue(( "k4" == p.getName() )) + self.assertTrue( p.getValue() == 4.5 ) + self.assertTrue( m.getNumRules() == 4 ) pr = m.getRule(0) - self.assert_(( "t" == pr.getVariable() )) - self.assert_(( "s1 + s2" == pr.getFormula() )) + self.assertTrue(( "t" == pr.getVariable() )) + self.assertTrue(( "s1 + s2" == pr.getFormula() )) ud = pr.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 2 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) - self.assert_( pr.containsUndeclaredUnits() == False ) + self.assertTrue( ud.getNumUnits() == 2 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( pr.containsUndeclaredUnits() == False ) pr = m.getRule(1) - self.assert_(( "k" == pr.getVariable() )) - self.assert_(( "k3/k2" == pr.getFormula() )) + self.assertTrue(( "k" == pr.getVariable() )) + self.assertTrue(( "k3/k2" == pr.getFormula() )) ud = pr.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 0 ) - self.assert_( pr.containsUndeclaredUnits() == True ) + self.assertTrue( ud.getNumUnits() == 0 ) + self.assertTrue( pr.containsUndeclaredUnits() == True ) scr = m.getRule(2) - self.assert_(( "x2" == scr.getVariable() )) - self.assert_(( "k * (s1+s2)/(1 + k)" == scr.getFormula() )) + self.assertTrue(( "x2" == scr.getVariable() )) + self.assertTrue(( "k * (s1+s2)/(1 + k)" == scr.getFormula() )) scr = m.getRule(3) - self.assert_(( "x3" == scr.getVariable() )) - self.assert_(( "p*(t - s2)" == scr.getFormula() )) - self.assert_( m.getNumReactions() == 2 ) + self.assertTrue(( "x3" == scr.getVariable() )) + self.assertTrue(( "p*(t - s2)" == scr.getFormula() )) + self.assertTrue( m.getNumReactions() == 2 ) r = m.getReaction(0) - self.assert_(( "j1" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "j1" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(1) - self.assert_(( "j3" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "j3" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) r = m.getReaction(0) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "x0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "x0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "s1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "k1 * x0" == kl.getFormula() )) + self.assertTrue(( "k1 * x0" == kl.getFormula() )) r = m.getReaction(1) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "s2" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "s2" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "x1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "x1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) kl = r.getKineticLaw() - self.assert_(( "k4 * s2" == kl.getFormula() )) + self.assertTrue(( "k4 * s2" == kl.getFormula() )) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile4.py b/src/bindings/python/test/sbml/TestReadFromFile4.py index a980c792ec..7eaaf34ac4 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile4.py +++ b/src/bindings/python/test/sbml/TestReadFromFile4.py @@ -42,33 +42,33 @@ def test_read_l1v1_minimal(self): d = libsbml.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_(( "x" == c.getName() )) - self.assert_( m.getNumSpecies() == 1 ) + self.assertTrue(( "x" == c.getName() )) + self.assertTrue( m.getNumSpecies() == 1 ) s = m.getSpecies(0) - self.assert_(( "y" == s.getName() )) - self.assert_(( "x" == s.getCompartment() )) - self.assert_( s.getInitialAmount() == 1 ) - self.assert_( s.getBoundaryCondition() == False ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue(( "y" == s.getName() )) + self.assertTrue(( "x" == s.getCompartment() )) + self.assertTrue( s.getInitialAmount() == 1 ) + self.assertTrue( s.getBoundaryCondition() == False ) + self.assertTrue( m.getNumReactions() == 1 ) r = m.getReaction(0) - self.assert_(( "r" == r.getName() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue(( "r" == r.getName() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_(( "y" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "y" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) sr = r.getProduct(0) - self.assert_(( "y" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "y" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile5.py b/src/bindings/python/test/sbml/TestReadFromFile5.py index 76ef3780b8..9548082556 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile5.py +++ b/src/bindings/python/test/sbml/TestReadFromFile5.py @@ -44,134 +44,134 @@ def test_read_l2v1_assignment(self): d = reader.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( m != None ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_( c != None ) - self.assert_( c.getId() == "cell" ) + self.assertTrue( c != None ) + self.assertTrue( c.getId() == "cell" ) ud = c.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) loc = m.getListOfCompartments() c1 = loc.get(0) - self.assert_( c1 == c ) + self.assertTrue( c1 == c ) c1 = loc.get("cell") - self.assert_( c1 == c ) - self.assert_( m.getNumSpecies() == 5 ) + self.assertTrue( c1 == c ) + self.assertTrue( m.getNumSpecies() == 5 ) s = m.getSpecies(0) - self.assert_( s != None ) - self.assert_( s.getId() == "X0" ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 1.0 ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "X0" ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 1.0 ) los = m.getListOfSpecies() s1 = los.get(0) - self.assert_( s1 == s ) + self.assertTrue( s1 == s ) s1 = los.get("X0") - self.assert_( s1 == s ) + self.assertTrue( s1 == s ) s = m.getSpecies(1) - self.assert_( s != None ) - self.assert_( s.getId() == "X1" ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 0.0 ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "X1" ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 0.0 ) s = m.getSpecies(2) - self.assert_( s != None ) - self.assert_( s.getId() == "T" ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 0.0 ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "T" ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 0.0 ) s = m.getSpecies(3) - self.assert_( s != None ) - self.assert_( s.getId() == "S1" ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 0.0 ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "S1" ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 0.0 ) s = m.getSpecies(4) - self.assert_( s != None ) - self.assert_( s.getId() == "S2" ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 0.0 ) - self.assert_( m.getNumParameters() == 1 ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "S2" ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 0.0 ) + self.assertTrue( m.getNumParameters() == 1 ) p = m.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getId() == "Keq" ) - self.assert_( p.getValue() == 2.5 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "Keq" ) + self.assertTrue( p.getValue() == 2.5 ) lop = m.getListOfParameters() p1 = lop.get(0) - self.assert_( p1 == p ) + self.assertTrue( p1 == p ) p1 = lop.get("Keq") - self.assert_( p1 == p ) + self.assertTrue( p1 == p ) ud = p.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 0 ) - self.assert_( m.getNumRules() == 2 ) + self.assertTrue( ud.getNumUnits() == 0 ) + self.assertTrue( m.getNumRules() == 2 ) ar = m.getRule(0) - self.assert_( ar != None ) - self.assert_( ar.getVariable() == "S1" ) - self.assert_( ar.getFormula() == "T / (1 + Keq)" ) + self.assertTrue( ar != None ) + self.assertTrue( ar.getVariable() == "S1" ) + self.assertTrue( ar.getFormula() == "T / (1 + Keq)" ) ud = ar.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 2 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(1).getExponent() == -1 ) - self.assert_( ar.containsUndeclaredUnits() == True ) + self.assertTrue( ud.getNumUnits() == 2 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getUnit(1).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(1).getExponent() == -1 ) + self.assertTrue( ar.containsUndeclaredUnits() == True ) lor = m.getListOfRules() ar1 = lor.get(0) - self.assert_( ar1 == ar ) + self.assertTrue( ar1 == ar ) ar1 = lor.get("S1") - self.assert_( ar1 == ar ) + self.assertTrue( ar1 == ar ) ar = m.getRule(1) - self.assert_( ar != None ) - self.assert_( ar.getVariable() == "S2" ) - self.assert_( ar.getFormula() == "Keq * S1" ) - self.assert_( m.getNumReactions() == 2 ) + self.assertTrue( ar != None ) + self.assertTrue( ar.getVariable() == "S2" ) + self.assertTrue( ar.getFormula() == "Keq * S1" ) + self.assertTrue( m.getNumReactions() == 2 ) r = m.getReaction(0) - self.assert_( r != None ) - self.assert_( r.getId() == "in" ) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r != None ) + self.assertTrue( r.getId() == "in" ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_( sr != None ) - self.assert_( sr.getSpecies() == "X0" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getSpecies() == "X0" ) sr = r.getProduct(0) - self.assert_( sr != None ) - self.assert_( sr.getSpecies() == "T" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getSpecies() == "T" ) kl = r.getKineticLaw() - self.assert_( kl != None ) - self.assert_( kl.getFormula() == "k1 * X0" ) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl != None ) + self.assertTrue( kl.getFormula() == "k1 * X0" ) + self.assertTrue( kl.getNumParameters() == 1 ) r1 = kl.getParentSBMLObject() - self.assert_( r1 != None ) - self.assert_( r1.getId() == "in" ) - self.assert_( r1.getNumReactants() == 1 ) - self.assert_( r1.getNumProducts() == 1 ) + self.assertTrue( r1 != None ) + self.assertTrue( r1.getId() == "in" ) + self.assertTrue( r1.getNumReactants() == 1 ) + self.assertTrue( r1.getNumProducts() == 1 ) p = kl.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getId() == "k1" ) - self.assert_( p.getValue() == 0.1 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "k1" ) + self.assertTrue( p.getValue() == 0.1 ) kl = p.getParentSBMLObject().getParentSBMLObject() - self.assert_( kl != None ) - self.assert_( kl.getFormula() == "k1 * X0" ) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl != None ) + self.assertTrue( kl.getFormula() == "k1 * X0" ) + self.assertTrue( kl.getNumParameters() == 1 ) r = m.getReaction(1) - self.assert_( r != None ) - self.assert_( r.getId() == "out" ) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue( r != None ) + self.assertTrue( r.getId() == "out" ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getReactant(0) - self.assert_( sr != None ) - self.assert_( sr.getSpecies() == "T" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getSpecies() == "T" ) sr = r.getProduct(0) - self.assert_( sr != None ) - self.assert_( sr.getSpecies() == "X1" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getSpecies() == "X1" ) kl = r.getKineticLaw() - self.assert_( kl != None ) - self.assert_( kl.getFormula() == "k2 * T" ) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl != None ) + self.assertTrue( kl.getFormula() == "k2 * T" ) + self.assertTrue( kl.getNumParameters() == 1 ) p = kl.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getId() == "k2" ) - self.assert_( p.getValue() == 0.15 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "k2" ) + self.assertTrue( p.getValue() == 0.15 ) d = None pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile6.py b/src/bindings/python/test/sbml/TestReadFromFile6.py index b044c4f9b2..7bb12ac6d8 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile6.py +++ b/src/bindings/python/test/sbml/TestReadFromFile6.py @@ -44,125 +44,125 @@ def test_read_l2v2_newComponents(self): d = reader.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 2 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 2 ) m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getId() == "l2v2_newComponents" ) - self.assert_( m.getSBOTerm() == 4 ) - self.assert_( m.getSBOTermID() == "SBO:0000004" ) - self.assert_( m.getNumCompartments() == 2 ) + self.assertTrue( m != None ) + self.assertTrue( m.getId() == "l2v2_newComponents" ) + self.assertTrue( m.getSBOTerm() == 4 ) + self.assertTrue( m.getSBOTermID() == "SBO:0000004" ) + self.assertTrue( m.getNumCompartments() == 2 ) c = m.getCompartment(0) - self.assert_( c != None ) - self.assert_( c.getId() == "cell" ) - self.assert_( c.getCompartmentType() == "mitochondria" ) - self.assert_( c.getOutside() == "m" ) - self.assert_( c.getSBOTerm() == -1 ) - self.assert_( c.getSBOTermID() == "" ) + self.assertTrue( c != None ) + self.assertTrue( c.getId() == "cell" ) + self.assertTrue( c.getCompartmentType() == "mitochondria" ) + self.assertTrue( c.getOutside() == "m" ) + self.assertTrue( c.getSBOTerm() == -1 ) + self.assertTrue( c.getSBOTermID() == "" ) c = m.getCompartment(1) - self.assert_( c != None ) - self.assert_( c.getId() == "m" ) - self.assert_( c.getCompartmentType() == "mitochondria" ) - self.assert_( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( c != None ) + self.assertTrue( c.getId() == "m" ) + self.assertTrue( c.getCompartmentType() == "mitochondria" ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) ct = m.getCompartmentType(0) - self.assert_( ct != None ) - self.assert_( ct.getId() == "mitochondria" ) + self.assertTrue( ct != None ) + self.assertTrue( ct.getId() == "mitochondria" ) loct = m.getListOfCompartmentTypes() ct1 = loct.get(0) - self.assert_( ct1 == ct ) + self.assertTrue( ct1 == ct ) ct1 = loct.get("mitochondria") - self.assert_( ct1 == ct ) - self.assert_( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( ct1 == ct ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) st = m.getSpeciesType(0) - self.assert_( st != None ) - self.assert_( st.getId() == "Glucose" ) - self.assert_( m.getNumSpecies() == 2 ) + self.assertTrue( st != None ) + self.assertTrue( st.getId() == "Glucose" ) + self.assertTrue( m.getNumSpecies() == 2 ) s = m.getSpecies(0) - self.assert_( s != None ) - self.assert_( s.getId() == "X0" ) - self.assert_( s.getSpeciesType() == "Glucose" ) - self.assert_( s.getCompartment() == "cell" ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "X0" ) + self.assertTrue( s.getSpeciesType() == "Glucose" ) + self.assertTrue( s.getCompartment() == "cell" ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( False, s.isSetInitialConcentration() ) s = m.getSpecies(1) - self.assert_( s != None ) - self.assert_( s.getId() == "X1" ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "X1" ) self.assertEqual( False, s.isSetSpeciesType() ) - self.assert_( s.getCompartment() == "cell" ) - self.assert_( s.getInitialConcentration() == 0.013 ) + self.assertTrue( s.getCompartment() == "cell" ) + self.assertTrue( s.getInitialConcentration() == 0.013 ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( True, s.isSetInitialConcentration() ) - self.assert_( m.getNumParameters() == 1 ) + self.assertTrue( m.getNumParameters() == 1 ) p = m.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getId() == "y" ) - self.assert_( p.getValue() == 2 ) - self.assert_( p.getUnits() == "dimensionless" ) - self.assert_( p.getId() == "y" ) - self.assert_( p.getSBOTerm() == 2 ) - self.assert_( p.getSBOTermID() == "SBO:0000002" ) - self.assert_( m.getNumConstraints() == 1 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "y" ) + self.assertTrue( p.getValue() == 2 ) + self.assertTrue( p.getUnits() == "dimensionless" ) + self.assertTrue( p.getId() == "y" ) + self.assertTrue( p.getSBOTerm() == 2 ) + self.assertTrue( p.getSBOTermID() == "SBO:0000002" ) + self.assertTrue( m.getNumConstraints() == 1 ) con = m.getConstraint(0) - self.assert_( con != None ) - self.assert_( con.getSBOTerm() == 64 ) - self.assert_( con.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( con != None ) + self.assertTrue( con.getSBOTerm() == 64 ) + self.assertTrue( con.getSBOTermID() == "SBO:0000064" ) ast = con.getMath() - self.assert_(( "lt(1, cell)" == libsbml.formulaToString(ast) )) + self.assertTrue(( "lt(1, cell)" == libsbml.formulaToString(ast) )) locon = m.getListOfConstraints() con1 = locon.get(0) - self.assert_( con1 == con ) - self.assert_( m.getNumInitialAssignments() == 1 ) + self.assertTrue( con1 == con ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) ia = m.getInitialAssignment(0) - self.assert_( ia != None ) - self.assert_( ia.getSBOTerm() == 64 ) - self.assert_( ia.getSBOTermID() == "SBO:0000064" ) - self.assert_( ia.getSymbol() == "X0" ) + self.assertTrue( ia != None ) + self.assertTrue( ia.getSBOTerm() == 64 ) + self.assertTrue( ia.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( ia.getSymbol() == "X0" ) ast = ia.getMath() - self.assert_(( "y * X1" == libsbml.formulaToString(ast) )) + self.assertTrue(( "y * X1" == libsbml.formulaToString(ast) )) loia = m.getListOfInitialAssignments() ia1 = loia.get(0) - self.assert_( ia1 == ia ) + self.assertTrue( ia1 == ia ) ia1 = loia.get("X0") - self.assert_( ia1 == ia ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( ia1 == ia ) + self.assertTrue( m.getNumReactions() == 1 ) r = m.getReaction(0) - self.assert_( r != None ) - self.assert_( r.getSBOTerm() == 231 ) - self.assert_( r.getSBOTermID() == "SBO:0000231" ) - self.assert_( r.getId() == "in" ) + self.assertTrue( r != None ) + self.assertTrue( r.getSBOTerm() == 231 ) + self.assertTrue( r.getSBOTermID() == "SBO:0000231" ) + self.assertTrue( r.getId() == "in" ) lor = m.getListOfReactions() r1 = lor.get(0) - self.assert_( r1 == r ) + self.assertTrue( r1 == r ) r1 = lor.get("in") - self.assert_( r1 == r ) + self.assertTrue( r1 == r ) self.assertEqual( True, r.isSetKineticLaw() ) kl = r.getKineticLaw() - self.assert_( kl != None ) - self.assert_( kl.getSBOTerm() == 1 ) - self.assert_( kl.getSBOTermID() == "SBO:0000001" ) + self.assertTrue( kl != None ) + self.assertTrue( kl.getSBOTerm() == 1 ) + self.assertTrue( kl.getSBOTermID() == "SBO:0000001" ) self.assertEqual( True, kl.isSetMath() ) ast = kl.getMath() - self.assert_(( "v * X0 / t" == libsbml.formulaToString(ast) )) - self.assert_( kl.getNumParameters() == 2 ) + self.assertTrue(( "v * X0 / t" == libsbml.formulaToString(ast) )) + self.assertTrue( kl.getNumParameters() == 2 ) p = kl.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getSBOTerm() == 2 ) - self.assert_( p.getSBOTermID() == "SBO:0000002" ) - self.assert_( p.getId() == "v" ) - self.assert_( p.getUnits() == "litre" ) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 0 ) - self.assert_( r.getNumModifiers() == 0 ) + self.assertTrue( p != None ) + self.assertTrue( p.getSBOTerm() == 2 ) + self.assertTrue( p.getSBOTermID() == "SBO:0000002" ) + self.assertTrue( p.getId() == "v" ) + self.assertTrue( p.getUnits() == "litre" ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 0 ) + self.assertTrue( r.getNumModifiers() == 0 ) sr = r.getReactant(0) - self.assert_( sr != None ) - self.assert_( sr.getName() == "sarah" ) - self.assert_( sr.getId() == "me" ) - self.assert_( sr.getSpecies() == "X0" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getName() == "sarah" ) + self.assertTrue( sr.getId() == "me" ) + self.assertTrue( sr.getSpecies() == "X0" ) losr = r.getListOfReactants() sr1 = losr.get(0) - self.assert_( sr1 == sr ) + self.assertTrue( sr1 == sr ) sr1 = losr.get("me") - self.assert_( sr1 == sr ) + self.assertTrue( sr1 == sr ) d = None pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile7.py b/src/bindings/python/test/sbml/TestReadFromFile7.py index 332979fef3..df3b22ae92 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile7.py +++ b/src/bindings/python/test/sbml/TestReadFromFile7.py @@ -44,197 +44,197 @@ def test_read_l2v3_all(self): d = reader.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 3 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 3 ) m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getId() == "l2v3_all" ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( m != None ) + self.assertTrue( m.getId() == "l2v3_all" ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_( c != None ) - self.assert_( c.getId() == "a" ) - self.assert_( c.getCompartmentType() == "hh" ) - self.assert_( c.getSBOTerm() == 236 ) - self.assert_( c.getSBOTermID() == "SBO:0000236" ) - self.assert_( c.getSize() == 2.3 ) - self.assert_( m.getNumCompartmentTypes() == 1 ) + self.assertTrue( c != None ) + self.assertTrue( c.getId() == "a" ) + self.assertTrue( c.getCompartmentType() == "hh" ) + self.assertTrue( c.getSBOTerm() == 236 ) + self.assertTrue( c.getSBOTermID() == "SBO:0000236" ) + self.assertTrue( c.getSize() == 2.3 ) + self.assertTrue( m.getNumCompartmentTypes() == 1 ) ct = m.getCompartmentType(0) - self.assert_( ct != None ) - self.assert_( ct.getId() == "hh" ) - self.assert_( ct.getSBOTerm() == 236 ) - self.assert_( ct.getSBOTermID() == "SBO:0000236" ) - self.assert_( m.getNumSpeciesTypes() == 1 ) + self.assertTrue( ct != None ) + self.assertTrue( ct.getId() == "hh" ) + self.assertTrue( ct.getSBOTerm() == 236 ) + self.assertTrue( ct.getSBOTermID() == "SBO:0000236" ) + self.assertTrue( m.getNumSpeciesTypes() == 1 ) st = m.getSpeciesType(0) - self.assert_( st != None ) - self.assert_( st.getId() == "gg" ) - self.assert_( st.getName() == "dd" ) - self.assert_( st.getSBOTerm() == 236 ) - self.assert_( st.getSBOTermID() == "SBO:0000236" ) + self.assertTrue( st != None ) + self.assertTrue( st.getId() == "gg" ) + self.assertTrue( st.getName() == "dd" ) + self.assertTrue( st.getSBOTerm() == 236 ) + self.assertTrue( st.getSBOTermID() == "SBO:0000236" ) lost = m.getListOfSpeciesTypes() st1 = lost.get(0) - self.assert_( st1 == st ) + self.assertTrue( st1 == st ) st1 = lost.get("gg") - self.assert_( st1 == st ) - self.assert_( m.getNumConstraints() == 1 ) + self.assertTrue( st1 == st ) + self.assertTrue( m.getNumConstraints() == 1 ) con = m.getConstraint(0) - self.assert_( con != None ) + self.assertTrue( con != None ) ast = con.getMath() - self.assert_(( "lt(x, 3)" == libsbml.formulaToString(ast) )) - self.assert_( m.getNumEvents() == 1 ) + self.assertTrue(( "lt(x, 3)" == libsbml.formulaToString(ast) )) + self.assertTrue( m.getNumEvents() == 1 ) e = m.getEvent(0) - self.assert_( e != None ) - self.assert_( e.getId() == "e1" ) - self.assert_( e.getSBOTerm() == 231 ) - self.assert_( e.getSBOTermID() == "SBO:0000231" ) + self.assertTrue( e != None ) + self.assertTrue( e.getId() == "e1" ) + self.assertTrue( e.getSBOTerm() == 231 ) + self.assertTrue( e.getSBOTermID() == "SBO:0000231" ) self.assertEqual( True, e.isSetDelay() ) delay = e.getDelay() - self.assert_( delay != None ) - self.assert_( delay.getSBOTerm() == 64 ) - self.assert_( delay.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( delay != None ) + self.assertTrue( delay.getSBOTerm() == 64 ) + self.assertTrue( delay.getSBOTermID() == "SBO:0000064" ) ast = delay.getMath() - self.assert_(( "p + 3" == libsbml.formulaToString(ast) )) + self.assertTrue(( "p + 3" == libsbml.formulaToString(ast) )) self.assertEqual( True, e.isSetTrigger() ) trigger = e.getTrigger() - self.assert_( trigger != None ) - self.assert_( trigger.getSBOTerm() == 64 ) - self.assert_( trigger.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( trigger != None ) + self.assertTrue( trigger.getSBOTerm() == 64 ) + self.assertTrue( trigger.getSBOTermID() == "SBO:0000064" ) ast = trigger.getMath() - self.assert_(( "lt(x, 3)" == libsbml.formulaToString(ast) )) + self.assertTrue(( "lt(x, 3)" == libsbml.formulaToString(ast) )) loe = m.getListOfEvents() e1 = loe.get(0) - self.assert_( e1 == e ) + self.assertTrue( e1 == e ) e1 = loe.get("e1") - self.assert_( e1 == e ) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue( e1 == e ) + self.assertTrue( e.getNumEventAssignments() == 1 ) ea = e.getEventAssignment(0) - self.assert_( ea != None ) - self.assert_( ea.getVariable() == "a" ) - self.assert_( ea.getSBOTerm() == 64 ) - self.assert_( ea.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( ea != None ) + self.assertTrue( ea.getVariable() == "a" ) + self.assertTrue( ea.getSBOTerm() == 64 ) + self.assertTrue( ea.getSBOTermID() == "SBO:0000064" ) ast = ea.getMath() - self.assert_(( "x * p3" == libsbml.formulaToString(ast) )) + self.assertTrue(( "x * p3" == libsbml.formulaToString(ast) )) loea = e.getListOfEventAssignments() ea1 = loea.get(0) - self.assert_( ea1 == ea ) + self.assertTrue( ea1 == ea ) ea1 = loea.get("a") - self.assert_( ea1 == ea ) - self.assert_( m.getNumFunctionDefinitions() == 1 ) + self.assertTrue( ea1 == ea ) + self.assertTrue( m.getNumFunctionDefinitions() == 1 ) fd = m.getFunctionDefinition(0) - self.assert_( fd != None ) - self.assert_( fd.getId() == "fd" ) - self.assert_( fd.getSBOTerm() == 64 ) - self.assert_( fd.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( fd != None ) + self.assertTrue( fd.getId() == "fd" ) + self.assertTrue( fd.getSBOTerm() == 64 ) + self.assertTrue( fd.getSBOTermID() == "SBO:0000064" ) ast = fd.getMath() - self.assert_(( "lambda(x, pow(x, 3))" == libsbml.formulaToString(ast) )) + self.assertTrue(( "lambda(x, pow(x, 3))" == libsbml.formulaToString(ast) )) lofd = m.getListOfFunctionDefinitions() fd1 = lofd.get(0) - self.assert_( fd1 == fd ) + self.assertTrue( fd1 == fd ) fd1 = lofd.get("fd") - self.assert_( fd1 == fd ) - self.assert_( m.getNumInitialAssignments() == 1 ) + self.assertTrue( fd1 == fd ) + self.assertTrue( m.getNumInitialAssignments() == 1 ) ia = m.getInitialAssignment(0) - self.assert_( ia != None ) - self.assert_( ia.getSymbol() == "p1" ) + self.assertTrue( ia != None ) + self.assertTrue( ia.getSymbol() == "p1" ) ast = ia.getMath() - self.assert_(( "x * p3" == libsbml.formulaToString(ast) )) - self.assert_( m.getNumRules() == 3 ) + self.assertTrue(( "x * p3" == libsbml.formulaToString(ast) )) + self.assertTrue( m.getNumRules() == 3 ) alg = m.getRule(0) - self.assert_( alg != None ) - self.assert_( alg.getSBOTerm() == 64 ) - self.assert_( alg.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( alg != None ) + self.assertTrue( alg.getSBOTerm() == 64 ) + self.assertTrue( alg.getSBOTermID() == "SBO:0000064" ) ast = alg.getMath() - self.assert_(( "pow(x, 3)" == libsbml.formulaToString(ast) )) + self.assertTrue(( "pow(x, 3)" == libsbml.formulaToString(ast) )) ar = m.getRule(1) - self.assert_( ar != None ) - self.assert_( ar.getVariable() == "p2" ) - self.assert_( ar.getSBOTerm() == 64 ) - self.assert_( ar.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( ar != None ) + self.assertTrue( ar.getVariable() == "p2" ) + self.assertTrue( ar.getSBOTerm() == 64 ) + self.assertTrue( ar.getSBOTermID() == "SBO:0000064" ) ast = ar.getMath() - self.assert_(( "x * p3" == libsbml.formulaToString(ast) )) + self.assertTrue(( "x * p3" == libsbml.formulaToString(ast) )) rr = m.getRule(2) - self.assert_( rr != None ) - self.assert_( rr.getVariable() == "p3" ) - self.assert_( rr.getSBOTerm() == 64 ) - self.assert_( rr.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( rr != None ) + self.assertTrue( rr.getVariable() == "p3" ) + self.assertTrue( rr.getSBOTerm() == 64 ) + self.assertTrue( rr.getSBOTermID() == "SBO:0000064" ) ast = rr.getMath() - self.assert_(( "p1 / p" == libsbml.formulaToString(ast) )) - self.assert_( m.getNumSpecies() == 1 ) + self.assertTrue(( "p1 / p" == libsbml.formulaToString(ast) )) + self.assertTrue( m.getNumSpecies() == 1 ) s = m.getSpecies(0) - self.assert_( s != None ) - self.assert_( s.getId() == "s" ) - self.assert_( s.getSpeciesType() == "gg" ) - self.assert_( s.getCompartment() == "a" ) - self.assert_( s.getSBOTerm() == 236 ) - self.assert_( s.getSBOTermID() == "SBO:0000236" ) + self.assertTrue( s != None ) + self.assertTrue( s.getId() == "s" ) + self.assertTrue( s.getSpeciesType() == "gg" ) + self.assertTrue( s.getCompartment() == "a" ) + self.assertTrue( s.getSBOTerm() == 236 ) + self.assertTrue( s.getSBOTermID() == "SBO:0000236" ) self.assertEqual( True, s.isSetInitialAmount() ) self.assertEqual( False, s.isSetInitialConcentration() ) - self.assert_( s.getInitialAmount() == 0 ) - self.assert_( m.getNumReactions() == 1 ) + self.assertTrue( s.getInitialAmount() == 0 ) + self.assertTrue( m.getNumReactions() == 1 ) r = m.getReaction(0) - self.assert_( r != None ) - self.assert_( r.getId() == "r" ) + self.assertTrue( r != None ) + self.assertTrue( r.getId() == "r" ) self.assertEqual( False, r.getReversible() ) self.assertEqual( True, r.getFast() ) self.assertEqual( True, r.isSetKineticLaw() ) kl = r.getKineticLaw() - self.assert_( kl != None ) + self.assertTrue( kl != None ) self.assertEqual( True, kl.isSetMath() ) ast = kl.getMath() - self.assert_(( "s * k / p" == libsbml.formulaToString(ast) )) - self.assert_( kl.getNumParameters() == 2 ) + self.assertTrue(( "s * k / p" == libsbml.formulaToString(ast) )) + self.assertTrue( kl.getNumParameters() == 2 ) p = kl.getParameter(0) - self.assert_( p != None ) - self.assert_( p.getId() == "k" ) - self.assert_( p.getUnits() == "litre" ) - self.assert_( p.getValue() == 9 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "k" ) + self.assertTrue( p.getUnits() == "litre" ) + self.assertTrue( p.getValue() == 9 ) ud = p.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) lop = kl.getListOfParameters() p1 = lop.get(0) - self.assert_( p1 == p ) + self.assertTrue( p1 == p ) p1 = lop.get("k") - self.assert_( p1 == p ) + self.assertTrue( p1 == p ) p = kl.getParameter(1) - self.assert_( p != None ) - self.assert_( p.getId() == "k1" ) - self.assert_( p.getUnits() == "ud1" ) - self.assert_( p.getValue() == 9 ) + self.assertTrue( p != None ) + self.assertTrue( p.getId() == "k1" ) + self.assertTrue( p.getUnits() == "ud1" ) + self.assertTrue( p.getValue() == 9 ) ud = p.getDerivedUnitDefinition() - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( ud.getUnit(0).getExponent() == 1 ) - self.assert_( r.getNumReactants() == 1 ) - self.assert_( r.getNumProducts() == 0 ) - self.assert_( r.getNumModifiers() == 0 ) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( ud.getUnit(0).getExponent() == 1 ) + self.assertTrue( r.getNumReactants() == 1 ) + self.assertTrue( r.getNumProducts() == 0 ) + self.assertTrue( r.getNumModifiers() == 0 ) sr = r.getReactant(0) - self.assert_( sr != None ) - self.assert_( sr.getSpecies() == "s" ) - self.assert_( sr.getSBOTerm() == 11 ) - self.assert_( sr.getSBOTermID() == "SBO:0000011" ) + self.assertTrue( sr != None ) + self.assertTrue( sr.getSpecies() == "s" ) + self.assertTrue( sr.getSBOTerm() == 11 ) + self.assertTrue( sr.getSBOTermID() == "SBO:0000011" ) stoich = sr.getStoichiometryMath() - self.assert_( stoich != None ) - self.assert_( stoich.getSBOTerm() == 64 ) - self.assert_( stoich.getSBOTermID() == "SBO:0000064" ) + self.assertTrue( stoich != None ) + self.assertTrue( stoich.getSBOTerm() == 64 ) + self.assertTrue( stoich.getSBOTermID() == "SBO:0000064" ) ast = stoich.getMath() - self.assert_(( "s * p" == libsbml.formulaToString(ast) )) - self.assert_( m.getNumUnitDefinitions() == 1 ) + self.assertTrue(( "s * p" == libsbml.formulaToString(ast) )) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) ud = m.getUnitDefinition(0) - self.assert_( ud != None ) - self.assert_( ud.getId() == "ud1" ) + self.assertTrue( ud != None ) + self.assertTrue( ud.getId() == "ud1" ) loud = m.getListOfUnitDefinitions() ud1 = loud.get(0) - self.assert_( ud1 == ud ) + self.assertTrue( ud1 == ud ) ud1 = loud.get("ud1") - self.assert_( ud1 == ud ) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud1 == ud ) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u != None ) - self.assert_( u.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( u != None ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_MOLE ) lou = ud.getListOfUnits() u1 = lou.get(0) - self.assert_( u1 == u ) + self.assertTrue( u1 == u ) d = None pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile8.py b/src/bindings/python/test/sbml/TestReadFromFile8.py index adcf3190e2..a610a40cdc 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile8.py +++ b/src/bindings/python/test/sbml/TestReadFromFile8.py @@ -44,32 +44,32 @@ def test_read_l2v4_new(self): d = reader.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) m = d.getModel() - self.assert_( m != None ) - self.assert_( m.getId() == "l2v4_all" ) - self.assert_( m.getNumCompartments() == 1 ) + self.assertTrue( m != None ) + self.assertTrue( m.getId() == "l2v4_all" ) + self.assertTrue( m.getNumCompartments() == 1 ) c = m.getCompartment(0) - self.assert_( c != None ) - self.assert_( c.getId() == "a" ) - self.assert_( c.getSize() == 1 ) + self.assertTrue( c != None ) + self.assertTrue( c.getId() == "a" ) + self.assertTrue( c.getSize() == 1 ) self.assertEqual( False, c.getConstant() ) - self.assert_( m.getNumEvents() == 1 ) + self.assertTrue( m.getNumEvents() == 1 ) e = m.getEvent(0) - self.assert_( e != None ) + self.assertTrue( e != None ) self.assertEqual( True, e.getUseValuesFromTriggerTime() ) self.assertEqual( True, e.isSetTrigger() ) trigger = e.getTrigger() - self.assert_( trigger != None ) + self.assertTrue( trigger != None ) ast = trigger.getMath() - self.assert_(( "lt(x, 3)" == libsbml.formulaToString(ast) )) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue(( "lt(x, 3)" == libsbml.formulaToString(ast) )) + self.assertTrue( e.getNumEventAssignments() == 1 ) ea = e.getEventAssignment(0) - self.assert_( ea != None ) - self.assert_( ea.getVariable() == "a" ) + self.assertTrue( ea != None ) + self.assertTrue( ea.getVariable() == "a" ) ast = ea.getMath() - self.assert_(( "x * p3" == libsbml.formulaToString(ast) )) + self.assertTrue(( "x * p3" == libsbml.formulaToString(ast) )) d = None pass diff --git a/src/bindings/python/test/sbml/TestReadFromFile9.py b/src/bindings/python/test/sbml/TestReadFromFile9.py index a0b599921b..4d152224a6 100644 --- a/src/bindings/python/test/sbml/TestReadFromFile9.py +++ b/src/bindings/python/test/sbml/TestReadFromFile9.py @@ -49,10 +49,10 @@ def test_read_l3v1_new(self): d = reader.readSBML(filename) if (d == None): pass - self.assert_( d.getLevel() == 3 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.getLevel() == 3 ) + self.assertTrue( d.getVersion() == 1 ) m = d.getModel() - self.assert_( m != None ) + self.assertTrue( m != None ) self.assertEqual( True, m.isSetSubstanceUnits() ) self.assertEqual( True, m.isSetTimeUnits() ) self.assertEqual( True, m.isSetVolumeUnits() ) @@ -60,187 +60,187 @@ def test_read_l3v1_new(self): self.assertEqual( True, m.isSetAreaUnits() ) self.assertEqual( True, m.isSetExtentUnits() ) self.assertEqual( True, m.isSetConversionFactor() ) - self.assert_( m.getSubstanceUnits() == "mole" ) - self.assert_( m.getTimeUnits() == "second" ) - self.assert_( m.getVolumeUnits() == "litre" ) - self.assert_( m.getLengthUnits() == "metre" ) - self.assert_( m.getAreaUnits() == "metre" ) - self.assert_( m.getExtentUnits() == "mole" ) - self.assert_( m.getConversionFactor() == "p" ) - self.assert_( m.getNumUnitDefinitions() == 2 ) + self.assertTrue( m.getSubstanceUnits() == "mole" ) + self.assertTrue( m.getTimeUnits() == "second" ) + self.assertTrue( m.getVolumeUnits() == "litre" ) + self.assertTrue( m.getLengthUnits() == "metre" ) + self.assertTrue( m.getAreaUnits() == "metre" ) + self.assertTrue( m.getExtentUnits() == "mole" ) + self.assertTrue( m.getConversionFactor() == "p" ) + self.assertTrue( m.getNumUnitDefinitions() == 2 ) ud = m.getUnitDefinition(0) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) self.assertEqual( False, u.isSetExponent() ) self.assertEqual( False, u.isSetScale() ) self.assertEqual( False, u.isSetMultiplier() ) self.assertEqual( True, isnan(u.getExponentAsDouble()) ) - self.assert_( u.getScale() == SBML_INT_MAX ) + self.assertTrue( u.getScale() == SBML_INT_MAX ) self.assertEqual( True, isnan(u.getMultiplier()) ) ud = m.getUnitDefinition(1) - self.assert_( ud.getNumUnits() == 3 ) + self.assertTrue( ud.getNumUnits() == 3 ) u = ud.getUnit(0) self.assertEqual( True, u.isSetExponent() ) self.assertEqual( True, u.isSetScale() ) self.assertEqual( True, u.isSetMultiplier() ) - self.assert_( u.getExponent() == -1 ) - self.assert_( u.getExponentAsDouble() == -1 ) - self.assert_( u.getScale() == 2 ) - self.assert_( u.getMultiplier() == 1.3 ) + self.assertTrue( u.getExponent() == -1 ) + self.assertTrue( u.getExponentAsDouble() == -1 ) + self.assertTrue( u.getScale() == 2 ) + self.assertTrue( u.getMultiplier() == 1.3 ) u = ud.getUnit(1) self.assertEqual( True, u.isSetExponent() ) self.assertEqual( True, u.isSetScale() ) self.assertEqual( True, u.isSetMultiplier() ) - self.assert_( u.getExponentAsDouble() == 1.5 ) - self.assert_( u.getScale() == 10 ) - self.assert_( u.getMultiplier() == 0.5 ) + self.assertTrue( u.getExponentAsDouble() == 1.5 ) + self.assertTrue( u.getScale() == 10 ) + self.assertTrue( u.getMultiplier() == 0.5 ) u = ud.getUnit(2) self.assertEqual( True, u.isSetExponent() ) self.assertEqual( True, u.isSetScale() ) self.assertEqual( True, u.isSetMultiplier() ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == 0 ) - self.assert_( u.getMultiplier() == 1 ) - self.assert_( m.getNumCompartments() == 3 ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue( u.getMultiplier() == 1 ) + self.assertTrue( m.getNumCompartments() == 3 ) c = m.getCompartment(0) self.assertEqual( True, c.isSetSize() ) self.assertEqual( True, c.isSetSpatialDimensions() ) self.assertEqual( True, c.isSetConstant() ) - self.assert_( c.getId() == "comp" ) - self.assert_( c.getSize() == 1e-14 ) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_( c.getSpatialDimensionsAsDouble() == 3 ) - self.assert_( c.getUnits() == "litre" ) - self.assert_( c.getConstant() == True ) + self.assertTrue( c.getId() == "comp" ) + self.assertTrue( c.getSize() == 1e-14 ) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue( c.getSpatialDimensionsAsDouble() == 3 ) + self.assertTrue( c.getUnits() == "litre" ) + self.assertTrue( c.getConstant() == True ) c = m.getCompartment(1) self.assertEqual( False, c.isSetSize() ) self.assertEqual( False, c.isSetSpatialDimensions() ) self.assertEqual( True, c.isSetConstant() ) - self.assert_( c.getId() == "comp1" ) + self.assertTrue( c.getId() == "comp1" ) self.assertEqual( True, isnan(c.getSize()) ) self.assertEqual( True, isnan(c.getSpatialDimensionsAsDouble()) ) - self.assert_( c.getConstant() == False ) + self.assertTrue( c.getConstant() == False ) c = m.getCompartment(2) self.assertEqual( False, c.isSetSize() ) self.assertEqual( True, c.isSetSpatialDimensions() ) self.assertEqual( False, c.isSetConstant() ) - self.assert_( c.getId() == "comp2" ) - self.assert_( c.getSpatialDimensionsAsDouble() == 4.6 ) - self.assert_( m.getNumSpecies() == 2 ) + self.assertTrue( c.getId() == "comp2" ) + self.assertTrue( c.getSpatialDimensionsAsDouble() == 4.6 ) + self.assertTrue( m.getNumSpecies() == 2 ) s = m.getSpecies(0) - self.assert_( s.getId() == "ES" ) - self.assert_( s.getCompartment() == "comp" ) + self.assertTrue( s.getId() == "ES" ) + self.assertTrue( s.getCompartment() == "comp" ) self.assertEqual( True, s.isSetConversionFactor() ) - self.assert_( s.getConversionFactor() == "p" ) + self.assertTrue( s.getConversionFactor() == "p" ) self.assertEqual( True, s.isSetBoundaryCondition() ) - self.assert_( s.getBoundaryCondition() == False ) + self.assertTrue( s.getBoundaryCondition() == False ) self.assertEqual( True, s.isSetHasOnlySubstanceUnits() ) - self.assert_( s.getHasOnlySubstanceUnits() == False ) + self.assertTrue( s.getHasOnlySubstanceUnits() == False ) self.assertEqual( True, s.isSetSubstanceUnits() ) - self.assert_( s.getSubstanceUnits() == "mole" ) + self.assertTrue( s.getSubstanceUnits() == "mole" ) self.assertEqual( True, s.isSetConstant() ) - self.assert_( s.getConstant() == False ) + self.assertTrue( s.getConstant() == False ) self.assertEqual( True, s.isSetInitialAmount() ) - self.assert_( s.getInitialAmount() == 0 ) + self.assertTrue( s.getInitialAmount() == 0 ) self.assertEqual( False, s.isSetInitialConcentration() ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) s = m.getSpecies(1) - self.assert_( s.getId() == "P" ) - self.assert_( s.getCompartment() == "comp" ) + self.assertTrue( s.getId() == "P" ) + self.assertTrue( s.getCompartment() == "comp" ) self.assertEqual( False, s.isSetConversionFactor() ) - self.assert_( s.getConversionFactor() == "" ) + self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetBoundaryCondition() ) self.assertEqual( False, s.isSetHasOnlySubstanceUnits() ) self.assertEqual( False, s.isSetSubstanceUnits() ) - self.assert_( s.getSubstanceUnits() == "" ) + self.assertTrue( s.getSubstanceUnits() == "" ) self.assertEqual( False, s.isSetConstant() ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( False, s.isSetInitialConcentration() ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) - self.assert_( m.getNumParameters() == 3 ) + self.assertTrue( m.getNumParameters() == 3 ) p = m.getParameter(0) - self.assert_( p.getId() == "Keq" ) + self.assertTrue( p.getId() == "Keq" ) self.assertEqual( True, p.isSetValue() ) - self.assert_( p.getValue() == 2.5 ) + self.assertTrue( p.getValue() == 2.5 ) self.assertEqual( True, p.isSetUnits() ) - self.assert_( p.getUnits() == "dimensionless" ) + self.assertTrue( p.getUnits() == "dimensionless" ) self.assertEqual( True, p.isSetConstant() ) - self.assert_( p.getConstant() == True ) + self.assertTrue( p.getConstant() == True ) p = m.getParameter(1) - self.assert_( p.getId() == "Keq1" ) + self.assertTrue( p.getId() == "Keq1" ) self.assertEqual( False, p.isSetValue() ) self.assertEqual( True, isnan(p.getValue()) ) self.assertEqual( False, p.isSetUnits() ) - self.assert_( p.getUnits() == "" ) + self.assertTrue( p.getUnits() == "" ) self.assertEqual( True, p.isSetConstant() ) - self.assert_( p.getConstant() == False ) + self.assertTrue( p.getConstant() == False ) p = m.getParameter(2) - self.assert_( p.getId() == "Keq2" ) + self.assertTrue( p.getId() == "Keq2" ) self.assertEqual( False, p.isSetValue() ) self.assertEqual( True, isnan(p.getValue()) ) self.assertEqual( False, p.isSetUnits() ) - self.assert_( p.getUnits() == "" ) + self.assertTrue( p.getUnits() == "" ) self.assertEqual( False, p.isSetConstant() ) - self.assert_( m.getNumReactions() == 3 ) + self.assertTrue( m.getNumReactions() == 3 ) r = m.getReaction(0) self.assertEqual( True, r.isSetFast() ) - self.assert_( r.getFast() == False ) + self.assertTrue( r.getFast() == False ) self.assertEqual( True, r.isSetReversible() ) - self.assert_( r.getReversible() == False ) + self.assertTrue( r.getReversible() == False ) self.assertEqual( True, r.isSetCompartment() ) - self.assert_( r.getCompartment() == "comp" ) + self.assertTrue( r.getCompartment() == "comp" ) sr = r.getReactant(0) self.assertEqual( True, sr.isSetConstant() ) - self.assert_( sr.getConstant() == True ) + self.assertTrue( sr.getConstant() == True ) self.assertEqual( True, sr.isSetStoichiometry() ) - self.assert_( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getStoichiometry() == 1 ) sr = r.getProduct(0) self.assertEqual( True, sr.isSetConstant() ) - self.assert_( sr.getConstant() == False ) + self.assertTrue( sr.getConstant() == False ) self.assertEqual( False, sr.isSetStoichiometry() ) self.assertEqual( True, isnan(sr.getStoichiometry()) ) kl = r.getKineticLaw() - self.assert_( kl.getNumLocalParameters() == 2 ) - self.assert_( kl.getNumParameters() == 2 ) + self.assertTrue( kl.getNumLocalParameters() == 2 ) + self.assertTrue( kl.getNumParameters() == 2 ) p = kl.getParameter(0) self.assertEqual( True, p.isSetUnits() ) - self.assert_( p.getUnits() == "per_second" ) + self.assertTrue( p.getUnits() == "per_second" ) self.assertEqual( True, p.isSetValue() ) - self.assert_( p.getValue() == 0.1 ) + self.assertTrue( p.getValue() == 0.1 ) lp = kl.getLocalParameter(0) self.assertEqual( True, lp.isSetUnits() ) - self.assert_( lp.getUnits() == "per_second" ) + self.assertTrue( lp.getUnits() == "per_second" ) self.assertEqual( True, lp.isSetValue() ) - self.assert_( lp.getValue() == 0.1 ) + self.assertTrue( lp.getValue() == 0.1 ) lp = kl.getLocalParameter(1) self.assertEqual( False, lp.isSetUnits() ) - self.assert_( lp.getUnits() == "" ) + self.assertTrue( lp.getUnits() == "" ) self.assertEqual( False, lp.isSetValue() ) self.assertEqual( True, isnan(lp.getValue()) ) r = m.getReaction(1) self.assertEqual( True, r.isSetFast() ) - self.assert_( r.getFast() == True ) + self.assertTrue( r.getFast() == True ) self.assertEqual( True, r.isSetReversible() ) - self.assert_( r.getReversible() == True ) + self.assertTrue( r.getReversible() == True ) self.assertEqual( False, r.isSetCompartment() ) - self.assert_( r.getCompartment() == "" ) + self.assertTrue( r.getCompartment() == "" ) sr = r.getReactant(0) self.assertEqual( False, sr.isSetConstant() ) r = m.getReaction(2) self.assertEqual( False, r.isSetFast() ) self.assertEqual( False, r.isSetReversible() ) self.assertEqual( False, r.isSetCompartment() ) - self.assert_( r.getCompartment() == "" ) + self.assertTrue( r.getCompartment() == "" ) e = m.getEvent(0) t = e.getTrigger() self.assertEqual( True, t.isSetPersistent() ) - self.assert_( t.getPersistent() == False ) + self.assertTrue( t.getPersistent() == False ) self.assertEqual( True, t.isSetInitialValue() ) - self.assert_( t.getInitialValue() == False ) + self.assertTrue( t.getInitialValue() == False ) self.assertEqual( True, e.isSetPriority() ) pr = e.getPriority() - self.assert_( pr != None ) + self.assertTrue( pr != None ) self.assertEqual( True, pr.isSetMath() ) e = m.getEvent(1) self.assertEqual( False, e.isSetPriority() ) diff --git a/src/bindings/python/test/sbml/TestReadSBML.py b/src/bindings/python/test/sbml/TestReadSBML.py index e49ba4f6da..543318c7c1 100644 --- a/src/bindings/python/test/sbml/TestReadSBML.py +++ b/src/bindings/python/test/sbml/TestReadSBML.py @@ -156,9 +156,9 @@ def test_ReadSBML_AlgebraicRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) ar = self.M.getRule(0) - self.assert_(( "x + 1" == ar.getFormula() )) + self.assertTrue(( "x + 1" == ar.getFormula() )) pass def test_ReadSBML_AlgebraicRule_L2(self): @@ -179,14 +179,14 @@ def test_ReadSBML_AlgebraicRule_L2(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) ar = self.M.getRule(0) - self.assert_( ar != None ) + self.assertTrue( ar != None ) self.assertEqual( True, ar.isSetMath() ) math = ar.getMath() formula = ar.getFormula() - self.assert_( formula != None ) - self.assert_(( "S1 + S2 - T" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "S1 + S2 - T" == formula )) pass def test_ReadSBML_AssignmentRule(self): @@ -203,14 +203,14 @@ def test_ReadSBML_AssignmentRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) ar = self.M.getRule(0) - self.assert_( ar != None ) + self.assertTrue( ar != None ) self.assertEqual( True, ar.isSetMath() ) math = ar.getMath() formula = ar.getFormula() - self.assert_( formula != None ) - self.assert_(( "k3 / k2" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "k3 / k2" == formula )) pass def test_ReadSBML_Compartment(self): @@ -220,12 +220,12 @@ def test_ReadSBML_Compartment(self): "</listOfCompartments>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) c = self.M.getCompartment(0) - self.assert_(( "mitochondria" == c.getId() )) - self.assert_(( "milliliters" == c.getUnits() )) - self.assert_(( "cell" == c.getOutside() )) - self.assert_( c.getVolume() == .0001 ) + self.assertTrue(( "mitochondria" == c.getId() )) + self.assertTrue(( "milliliters" == c.getUnits() )) + self.assertTrue(( "cell" == c.getOutside() )) + self.assertTrue( c.getVolume() == .0001 ) self.assertEqual( True, c.isSetVolume() ) self.assertEqual( True, c.isSetSize() ) pass @@ -236,12 +236,12 @@ def test_ReadSBML_CompartmentVolumeRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) cvr = self.M.getRule(0) self.assertEqual( True, cvr.isCompartmentVolume() ) - self.assert_(( "A" == cvr.getVariable() )) - self.assert_(( "0.10 * t" == cvr.getFormula() )) - self.assert_( cvr.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue(( "A" == cvr.getVariable() )) + self.assertTrue(( "0.10 * t" == cvr.getFormula() )) + self.assertTrue( cvr.getType() == libsbml.RULE_TYPE_SCALAR ) pass def test_ReadSBML_Compartment_L2(self): @@ -251,7 +251,7 @@ def test_ReadSBML_Compartment_L2(self): "</listOfCompartments>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) c = self.M.getCompartment(0) self.assertEqual( True, c.isSetId() ) self.assertEqual( False, c.isSetName() ) @@ -259,11 +259,11 @@ def test_ReadSBML_Compartment_L2(self): self.assertEqual( True, c.isSetSize() ) self.assertEqual( True, c.isSetUnits() ) self.assertEqual( True, c.isSetOutside() ) - self.assert_(( "membrane" == c.getId() )) - self.assert_(( "area" == c.getUnits() )) - self.assert_(( "tissue" == c.getOutside() )) - self.assert_( c.getSpatialDimensions() == 2 ) - self.assert_( c.getSize() == .3 ) + self.assertTrue(( "membrane" == c.getId() )) + self.assertTrue(( "area" == c.getUnits() )) + self.assertTrue(( "tissue" == c.getOutside() )) + self.assertTrue( c.getSpatialDimensions() == 2 ) + self.assertTrue( c.getSize() == .3 ) pass def test_ReadSBML_Compartment_defaults(self): @@ -271,15 +271,15 @@ def test_ReadSBML_Compartment_defaults(self): ) self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) c = self.M.getCompartment(0) self.assertEqual( True, c.isSetId() ) self.assertEqual( True, c.isSetVolume() ) self.assertEqual( False, c.isSetSize() ) self.assertEqual( False, c.isSetUnits() ) self.assertEqual( False, c.isSetOutside() ) - self.assert_(( "cell" == c.getId() )) - self.assert_( c.getVolume() == 1.0 ) + self.assertTrue(( "cell" == c.getId() )) + self.assertTrue( c.getVolume() == 1.0 ) pass def test_ReadSBML_Compartment_defaults_L2(self): @@ -287,16 +287,16 @@ def test_ReadSBML_Compartment_defaults_L2(self): ) self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumCompartments() == 1 ) + self.assertTrue( self.M.getNumCompartments() == 1 ) c = self.M.getCompartment(0) self.assertEqual( True, c.isSetId() ) self.assertEqual( False, c.isSetName() ) self.assertEqual( False, c.isSetSize() ) self.assertEqual( False, c.isSetUnits() ) self.assertEqual( False, c.isSetOutside() ) - self.assert_(( "cell" == c.getId() )) - self.assert_( c.getSpatialDimensions() == 3 ) - self.assert_( c.getConstant() == True ) + self.assertTrue(( "cell" == c.getId() )) + self.assertTrue( c.getSpatialDimensions() == 3 ) + self.assertTrue( c.getConstant() == True ) pass def test_ReadSBML_Event(self): @@ -305,17 +305,17 @@ def test_ReadSBML_Event(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.getNumEvents() == 1 ) e = self.M.getEvent(0) - self.assert_( e != None ) + self.assertTrue( e != None ) self.assertEqual( True, e.isSetId() ) self.assertEqual( True, e.isSetName() ) self.assertEqual( True, e.isSetTimeUnits() ) self.assertEqual( False, e.isSetTrigger() ) self.assertEqual( False, e.isSetDelay() ) - self.assert_(( "e1" == e.getId() )) - self.assert_(( "MyEvent" == e.getName() )) - self.assert_(( "time" == e.getTimeUnits() )) + self.assertTrue(( "e1" == e.getId() )) + self.assertTrue(( "MyEvent" == e.getName() )) + self.assertTrue(( "time" == e.getTimeUnits() )) pass def test_ReadSBML_EventAssignment(self): @@ -330,19 +330,19 @@ def test_ReadSBML_EventAssignment(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.getNumEvents() == 1 ) e = self.M.getEvent(0) - self.assert_( e != None ) - self.assert_( e.getNumEventAssignments() == 1 ) + self.assertTrue( e != None ) + self.assertTrue( e.getNumEventAssignments() == 1 ) ea = e.getEventAssignment(0) - self.assert_( ea != None ) + self.assertTrue( ea != None ) self.assertEqual( True, ea.isSetVariable() ) - self.assert_(( "k2" == ea.getVariable() )) + self.assertTrue(( "k2" == ea.getVariable() )) self.assertEqual( True, ea.isSetMath() ) math = ea.getMath() formula = libsbml.formulaToString(math) - self.assert_( formula != None ) - self.assert_(( "0" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "0" == formula )) pass def test_ReadSBML_Event_delay(self): @@ -351,15 +351,15 @@ def test_ReadSBML_Event_delay(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.getNumEvents() == 1 ) e = self.M.getEvent(0) - self.assert_( e != None ) + self.assertTrue( e != None ) self.assertEqual( True, e.isSetDelay() ) self.assertEqual( False, e.isSetTrigger() ) delay = e.getDelay() formula = libsbml.formulaToString(delay.getMath()) - self.assert_( formula != None ) - self.assert_(( "5" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "5" == formula )) pass def test_ReadSBML_Event_trigger(self): @@ -378,15 +378,15 @@ def test_ReadSBML_Event_trigger(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumEvents() == 1 ) + self.assertTrue( self.M.getNumEvents() == 1 ) e = self.M.getEvent(0) - self.assert_( e != None ) + self.assertTrue( e != None ) self.assertEqual( False, e.isSetDelay() ) self.assertEqual( True, e.isSetTrigger() ) trigger = e.getTrigger() formula = libsbml.formulaToString(trigger.getMath()) - self.assert_( formula != None ) - self.assert_(( "leq(P1, t)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "leq(P1, t)" == formula )) pass def test_ReadSBML_FunctionDefinition(self): @@ -406,18 +406,18 @@ def test_ReadSBML_FunctionDefinition(self): "</listOfFunctionDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumFunctionDefinitions() == 1 ) + self.assertTrue( self.M.getNumFunctionDefinitions() == 1 ) fd = self.M.getFunctionDefinition(0) - self.assert_( fd != None ) + self.assertTrue( fd != None ) self.assertEqual( True, fd.isSetId() ) self.assertEqual( True, fd.isSetName() ) - self.assert_(( "pow3" == fd.getId() )) - self.assert_(( "cubed" == fd.getName() )) + self.assertTrue(( "pow3" == fd.getId() )) + self.assertTrue(( "cubed" == fd.getName() )) self.assertEqual( True, fd.isSetMath() ) math = fd.getMath() formula = libsbml.formulaToString(math) - self.assert_( formula != None ) - self.assert_(( "lambda(x, pow(x, 3))" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, pow(x, 3))" == formula )) pass def test_ReadSBML_KineticLaw(self): @@ -428,10 +428,10 @@ def test_ReadSBML_KineticLaw(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) kl = r.getKineticLaw() - self.assert_(( "k1*X0" == kl.getFormula() )) + self.assertTrue(( "k1*X0" == kl.getFormula() )) pass def test_ReadSBML_KineticLaw_L2(self): @@ -451,16 +451,16 @@ def test_ReadSBML_KineticLaw_L2(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_( r != None ) + self.assertTrue( r != None ) kl = r.getKineticLaw() - self.assert_( kl != None ) + self.assertTrue( kl != None ) self.assertEqual( True, kl.isSetMath() ) math = kl.getMath() formula = kl.getFormula() - self.assert_( formula != None ) - self.assert_(( "k * S2 * X0" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "k * S2 * X0" == formula )) pass def test_ReadSBML_KineticLaw_Parameter(self): @@ -475,14 +475,14 @@ def test_ReadSBML_KineticLaw_Parameter(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) kl = r.getKineticLaw() - self.assert_(( "k1*X0" == kl.getFormula() )) - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue(( "k1*X0" == kl.getFormula() )) + self.assertTrue( kl.getNumParameters() == 1 ) p = kl.getParameter(0) - self.assert_(( "k1" == p.getId() )) - self.assert_( p.getValue() == 0 ) + self.assertTrue(( "k1" == p.getId() )) + self.assertTrue( p.getValue() == 0 ) pass def test_ReadSBML_Model(self): @@ -491,7 +491,7 @@ def test_ReadSBML_Model(self): "</sbml>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_(( "testModel" == self.M.getId() )) + self.assertTrue(( "testModel" == self.M.getId() )) pass def test_ReadSBML_Model_L2(self): @@ -502,7 +502,7 @@ def test_ReadSBML_Model_L2(self): self.M = self.D.getModel() self.assertEqual( True, self.M.isSetId() ) self.assertEqual( False, self.M.isSetName() ) - self.assert_(( "testModel" == self.M.getId() )) + self.assertTrue(( "testModel" == self.M.getId() )) pass def test_ReadSBML_Parameter(self): @@ -511,12 +511,12 @@ def test_ReadSBML_Parameter(self): "</listOfParameters>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.getNumParameters() == 1 ) p = self.M.getParameter(0) - self.assert_(( "Km1" == p.getId() )) - self.assert_(( "second" == p.getUnits() )) - self.assert_( p.getValue() == 2.3 ) - self.assert_( p.isSetValue() == True ) + self.assertTrue(( "Km1" == p.getId() )) + self.assertTrue(( "second" == p.getUnits() )) + self.assertTrue( p.getValue() == 2.3 ) + self.assertTrue( p.isSetValue() == True ) pass def test_ReadSBML_ParameterRule(self): @@ -525,12 +525,12 @@ def test_ReadSBML_ParameterRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) pr = self.M.getRule(0) self.assertEqual( True, pr.isParameter() ) - self.assert_(( "k" == pr.getVariable() )) - self.assert_(( "k3/k2" == pr.getFormula() )) - self.assert_( pr.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue(( "k" == pr.getVariable() )) + self.assertTrue(( "k3/k2" == pr.getFormula() )) + self.assertTrue( pr.getType() == libsbml.RULE_TYPE_SCALAR ) pass def test_ReadSBML_Parameter_L2(self): @@ -539,16 +539,16 @@ def test_ReadSBML_Parameter_L2(self): "</listOfParameters>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.getNumParameters() == 1 ) p = self.M.getParameter(0) self.assertEqual( True, p.isSetId() ) self.assertEqual( False, p.isSetName() ) self.assertEqual( True, p.isSetValue() ) self.assertEqual( True, p.isSetUnits() ) - self.assert_(( "T" == p.getId() )) - self.assert_(( "Celsius" == p.getUnits() )) - self.assert_( p.getValue() == 4.6 ) - self.assert_( p.getConstant() == False ) + self.assertTrue(( "T" == p.getId() )) + self.assertTrue(( "Celsius" == p.getUnits() )) + self.assertTrue( p.getValue() == 4.6 ) + self.assertTrue( p.getConstant() == False ) pass def test_ReadSBML_Parameter_L2_defaults(self): @@ -556,14 +556,14 @@ def test_ReadSBML_Parameter_L2_defaults(self): ) self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumParameters() == 1 ) + self.assertTrue( self.M.getNumParameters() == 1 ) p = self.M.getParameter(0) self.assertEqual( True, p.isSetId() ) self.assertEqual( False, p.isSetName() ) self.assertEqual( False, p.isSetValue() ) self.assertEqual( False, p.isSetUnits() ) - self.assert_(( "x" == p.getId() )) - self.assert_( p.getConstant() == True ) + self.assertTrue(( "x" == p.getId() )) + self.assertTrue( p.getConstant() == True ) pass def test_ReadSBML_RateRule(self): @@ -587,14 +587,14 @@ def test_ReadSBML_RateRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) rr = self.M.getRule(0) - self.assert_( rr != None ) + self.assertTrue( rr != None ) self.assertEqual( True, rr.isSetMath() ) math = rr.getMath() formula = rr.getFormula() - self.assert_( formula != None ) - self.assert_(( "(1 - x) * log(x)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "(1 - x) * log(x)" == formula )) pass def test_ReadSBML_Reaction(self): @@ -603,11 +603,11 @@ def test_ReadSBML_Reaction(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getFast() == False ) pass def test_ReadSBML_Reaction_L2(self): @@ -616,14 +616,14 @@ def test_ReadSBML_Reaction_L2(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) self.assertEqual( True, r.isSetId() ) self.assertEqual( False, r.isSetName() ) self.assertEqual( True, r.isSetFast() ) - self.assert_(( "r1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "r1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getFast() == False ) pass def test_ReadSBML_Reaction_L2_defaults(self): @@ -631,13 +631,13 @@ def test_ReadSBML_Reaction_L2_defaults(self): ) self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) self.assertEqual( True, r.isSetId() ) self.assertEqual( False, r.isSetName() ) self.assertEqual( False, r.isSetFast() ) - self.assert_(( "r1" == r.getId() )) - self.assert_( r.getReversible() == True ) + self.assertTrue(( "r1" == r.getId() )) + self.assertTrue( r.getReversible() == True ) pass def test_ReadSBML_Reaction_defaults(self): @@ -646,18 +646,18 @@ def test_ReadSBML_Reaction_defaults(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() != False ) - self.assert_( r.getFast() == False ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() != False ) + self.assertTrue( r.getFast() == False ) pass def test_ReadSBML_SBML(self): s = wrapXML("<sbml level='1' version='1'> </sbml>") self.D = libsbml.readSBMLFromString(s) - self.assert_( self.D.getLevel() == 1 ) - self.assert_( self.D.getVersion() == 1 ) + self.assertTrue( self.D.getLevel() == 1 ) + self.assertTrue( self.D.getVersion() == 1 ) pass def test_ReadSBML_Specie(self): @@ -667,16 +667,16 @@ def test_ReadSBML_Specie(self): "</listOfSpecie>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) - self.assert_(( "Glucose" == sp.getId() )) - self.assert_(( "cell" == sp.getCompartment() )) - self.assert_(( "volume" == sp.getUnits() )) - self.assert_( sp.getInitialAmount() == 4.1 ) - self.assert_( sp.getBoundaryCondition() == False ) - self.assert_( sp.getCharge() == 6 ) - self.assert_( sp.isSetInitialAmount() == True ) - self.assert_( sp.isSetCharge() == True ) + self.assertTrue(( "Glucose" == sp.getId() )) + self.assertTrue(( "cell" == sp.getCompartment() )) + self.assertTrue(( "volume" == sp.getUnits() )) + self.assertTrue( sp.getInitialAmount() == 4.1 ) + self.assertTrue( sp.getBoundaryCondition() == False ) + self.assertTrue( sp.getCharge() == 6 ) + self.assertTrue( sp.isSetInitialAmount() == True ) + self.assertTrue( sp.isSetCharge() == True ) pass def test_ReadSBML_SpecieConcentrationRule(self): @@ -685,12 +685,12 @@ def test_ReadSBML_SpecieConcentrationRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) scr = self.M.getRule(0) self.assertEqual( True, scr.isSpeciesConcentration() ) - self.assert_(( "s2" == scr.getVariable() )) - self.assert_(( "k * t/(1 + k)" == scr.getFormula() )) - self.assert_( scr.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue(( "s2" == scr.getVariable() )) + self.assertTrue(( "k * t/(1 + k)" == scr.getFormula() )) + self.assertTrue( scr.getType() == libsbml.RULE_TYPE_SCALAR ) pass def test_ReadSBML_SpecieConcentrationRule_rate(self): @@ -700,12 +700,12 @@ def test_ReadSBML_SpecieConcentrationRule_rate(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) scr = self.M.getRule(0) self.assertEqual( True, scr.isSpeciesConcentration() ) - self.assert_(( "s2" == scr.getVariable() )) - self.assert_(( "k * t/(1 + k)" == scr.getFormula() )) - self.assert_( scr.getType() == libsbml.RULE_TYPE_RATE ) + self.assertTrue(( "s2" == scr.getVariable() )) + self.assertTrue(( "k * t/(1 + k)" == scr.getFormula() )) + self.assertTrue( scr.getType() == libsbml.RULE_TYPE_RATE ) pass def test_ReadSBML_SpecieReference_Product(self): @@ -718,15 +718,15 @@ def test_ReadSBML_SpecieReference_Product(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getNumProducts() == 1 ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getNumProducts() == 1 ) sr = r.getProduct(0) - self.assert_(( "S1" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "S1" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) pass def test_ReadSBML_SpecieReference_Reactant(self): @@ -739,15 +739,15 @@ def test_ReadSBML_SpecieReference_Reactant(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getNumReactants() == 1 ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getNumReactants() == 1 ) sr = r.getReactant(0) - self.assert_(( "X0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) pass def test_ReadSBML_SpecieReference_defaults(self): @@ -760,15 +760,15 @@ def test_ReadSBML_SpecieReference_defaults(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getNumReactants() == 1 ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getNumReactants() == 1 ) sr = r.getReactant(0) - self.assert_(( "X0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) pass def test_ReadSBML_Specie_defaults(self): @@ -777,14 +777,14 @@ def test_ReadSBML_Specie_defaults(self): "</listOfSpecie>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) - self.assert_(( "Glucose" == sp.getId() )) - self.assert_(( "cell" == sp.getCompartment() )) - self.assert_( sp.getInitialAmount() == 1.0 ) - self.assert_( sp.getBoundaryCondition() == False ) - self.assert_( sp.isSetInitialAmount() == True ) - self.assert_( sp.isSetCharge() == False ) + self.assertTrue(( "Glucose" == sp.getId() )) + self.assertTrue(( "cell" == sp.getCompartment() )) + self.assertTrue( sp.getInitialAmount() == 1.0 ) + self.assertTrue( sp.getBoundaryCondition() == False ) + self.assertTrue( sp.isSetInitialAmount() == True ) + self.assertTrue( sp.isSetCharge() == False ) pass def test_ReadSBML_Species(self): @@ -794,16 +794,16 @@ def test_ReadSBML_Species(self): "</listOfSpecies>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) - self.assert_(( "Glucose" == sp.getId() )) - self.assert_(( "cell" == sp.getCompartment() )) - self.assert_(( "volume" == sp.getUnits() )) - self.assert_( sp.getInitialAmount() == 4.1 ) - self.assert_( sp.getBoundaryCondition() == False ) - self.assert_( sp.getCharge() == 6 ) - self.assert_( sp.isSetInitialAmount() == True ) - self.assert_( sp.isSetCharge() == True ) + self.assertTrue(( "Glucose" == sp.getId() )) + self.assertTrue(( "cell" == sp.getCompartment() )) + self.assertTrue(( "volume" == sp.getUnits() )) + self.assertTrue( sp.getInitialAmount() == 4.1 ) + self.assertTrue( sp.getBoundaryCondition() == False ) + self.assertTrue( sp.getCharge() == 6 ) + self.assertTrue( sp.isSetInitialAmount() == True ) + self.assertTrue( sp.isSetCharge() == True ) pass def test_ReadSBML_SpeciesConcentrationRule(self): @@ -812,12 +812,12 @@ def test_ReadSBML_SpeciesConcentrationRule(self): "</listOfRules>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumRules() == 1 ) + self.assertTrue( self.M.getNumRules() == 1 ) scr = self.M.getRule(0) self.assertEqual( True, scr.isSpeciesConcentration() ) - self.assert_(( "s2" == scr.getVariable() )) - self.assert_(( "k * t/(1 + k)" == scr.getFormula() )) - self.assert_( scr.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue(( "s2" == scr.getVariable() )) + self.assertTrue(( "k * t/(1 + k)" == scr.getFormula() )) + self.assertTrue( scr.getType() == libsbml.RULE_TYPE_SCALAR ) pass def test_ReadSBML_SpeciesReference_StoichiometryMath_1(self): @@ -834,17 +834,17 @@ def test_ReadSBML_SpeciesReference_StoichiometryMath_1(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_( r != None ) - self.assert_( r.getNumReactants() == 1 ) + self.assertTrue( r != None ) + self.assertTrue( r.getNumReactants() == 1 ) sr = r.getReactant(0) - self.assert_( sr != None ) + self.assertTrue( sr != None ) self.assertEqual( True, sr.isSetStoichiometryMath() ) math = sr.getStoichiometryMath() formula = libsbml.formulaToString(math.getMath()) - self.assert_( formula != None ) - self.assert_(( "x" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "x" == formula )) pass def test_ReadSBML_SpeciesReference_StoichiometryMath_2(self): @@ -861,15 +861,15 @@ def test_ReadSBML_SpeciesReference_StoichiometryMath_2(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_( r != None ) - self.assert_( r.getNumReactants() == 1 ) + self.assertTrue( r != None ) + self.assertTrue( r.getNumReactants() == 1 ) sr = r.getReactant(0) - self.assert_( sr != None ) + self.assertTrue( sr != None ) self.assertEqual( False, sr.isSetStoichiometryMath() ) - self.assert_( sr.getStoichiometry() == 3 ) - self.assert_( sr.getDenominator() == 2 ) + self.assertTrue( sr.getStoichiometry() == 3 ) + self.assertTrue( sr.getDenominator() == 2 ) pass def test_ReadSBML_SpeciesReference_defaults(self): @@ -882,15 +882,15 @@ def test_ReadSBML_SpeciesReference_defaults(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumReactions() == 1 ) + self.assertTrue( self.M.getNumReactions() == 1 ) r = self.M.getReaction(0) - self.assert_(( "reaction_1" == r.getId() )) - self.assert_( r.getReversible() == False ) - self.assert_( r.getNumReactants() == 1 ) + self.assertTrue(( "reaction_1" == r.getId() )) + self.assertTrue( r.getReversible() == False ) + self.assertTrue( r.getNumReactants() == 1 ) sr = r.getReactant(0) - self.assert_(( "X0" == sr.getSpecies() )) - self.assert_( sr.getStoichiometry() == 1 ) - self.assert_( sr.getDenominator() == 1 ) + self.assertTrue(( "X0" == sr.getSpecies() )) + self.assertTrue( sr.getStoichiometry() == 1 ) + self.assertTrue( sr.getDenominator() == 1 ) pass def test_ReadSBML_Species_L2_1(self): @@ -901,7 +901,7 @@ def test_ReadSBML_Species_L2_1(self): "</listOfSpecies>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) self.assertEqual( True, sp.isSetId() ) self.assertEqual( False, sp.isSetName() ) @@ -911,15 +911,15 @@ def test_ReadSBML_Species_L2_1(self): self.assertEqual( True, sp.isSetSubstanceUnits() ) self.assertEqual( True, sp.isSetSpatialSizeUnits() ) self.assertEqual( True, sp.isSetCharge() ) - self.assert_(( "Glucose" == sp.getId() )) - self.assert_(( "cell" == sp.getCompartment() )) - self.assert_(( "item" == sp.getSubstanceUnits() )) - self.assert_(( "volume" == sp.getSpatialSizeUnits() )) - self.assert_( sp.getInitialConcentration() == 4.1 ) - self.assert_( sp.getHasOnlySubstanceUnits() == False ) - self.assert_( sp.getBoundaryCondition() == True ) - self.assert_( sp.getCharge() == 6 ) - self.assert_( sp.getConstant() == True ) + self.assertTrue(( "Glucose" == sp.getId() )) + self.assertTrue(( "cell" == sp.getCompartment() )) + self.assertTrue(( "item" == sp.getSubstanceUnits() )) + self.assertTrue(( "volume" == sp.getSpatialSizeUnits() )) + self.assertTrue( sp.getInitialConcentration() == 4.1 ) + self.assertTrue( sp.getHasOnlySubstanceUnits() == False ) + self.assertTrue( sp.getBoundaryCondition() == True ) + self.assertTrue( sp.getCharge() == 6 ) + self.assertTrue( sp.getConstant() == True ) pass def test_ReadSBML_Species_L2_2(self): @@ -928,7 +928,7 @@ def test_ReadSBML_Species_L2_2(self): "</listOfSpecies>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) self.assertEqual( True, sp.isSetId() ) self.assertEqual( False, sp.isSetName() ) @@ -938,11 +938,11 @@ def test_ReadSBML_Species_L2_2(self): self.assertEqual( False, sp.isSetSubstanceUnits() ) self.assertEqual( False, sp.isSetSpatialSizeUnits() ) self.assertEqual( False, sp.isSetCharge() ) - self.assert_(( "s" == sp.getId() )) - self.assert_(( "c" == sp.getCompartment() )) - self.assert_( sp.getHasOnlySubstanceUnits() == True ) - self.assert_( sp.getBoundaryCondition() == False ) - self.assert_( sp.getConstant() == False ) + self.assertTrue(( "s" == sp.getId() )) + self.assertTrue(( "c" == sp.getCompartment() )) + self.assertTrue( sp.getHasOnlySubstanceUnits() == True ) + self.assertTrue( sp.getBoundaryCondition() == False ) + self.assertTrue( sp.getConstant() == False ) pass def test_ReadSBML_Species_L2_defaults(self): @@ -951,7 +951,7 @@ def test_ReadSBML_Species_L2_defaults(self): "</listOfSpecies>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumSpecies() == 1 ) + self.assertTrue( self.M.getNumSpecies() == 1 ) sp = self.M.getSpecies(0) self.assertEqual( True, sp.isSetId() ) self.assertEqual( False, sp.isSetName() ) @@ -961,11 +961,11 @@ def test_ReadSBML_Species_L2_defaults(self): self.assertEqual( False, sp.isSetSubstanceUnits() ) self.assertEqual( False, sp.isSetSpatialSizeUnits() ) self.assertEqual( False, sp.isSetCharge() ) - self.assert_(( "Glucose_6_P" == sp.getId() )) - self.assert_(( "cell" == sp.getCompartment() )) - self.assert_( sp.getHasOnlySubstanceUnits() == False ) - self.assert_( sp.getBoundaryCondition() == False ) - self.assert_( sp.getConstant() == False ) + self.assertTrue(( "Glucose_6_P" == sp.getId() )) + self.assertTrue(( "cell" == sp.getCompartment() )) + self.assertTrue( sp.getHasOnlySubstanceUnits() == False ) + self.assertTrue( sp.getBoundaryCondition() == False ) + self.assertTrue( sp.getConstant() == False ) pass def test_ReadSBML_Unit(self): @@ -976,14 +976,14 @@ def test_ReadSBML_Unit(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) ud = self.M.getUnitDefinition(0) - self.assert_(( "substance" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue(( "substance" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == -3 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == -3 ) pass def test_ReadSBML_UnitDefinition(self): @@ -992,9 +992,9 @@ def test_ReadSBML_UnitDefinition(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) ud = self.M.getUnitDefinition(0) - self.assert_(( "mmls" == ud.getId() )) + self.assertTrue(( "mmls" == ud.getId() )) pass def test_ReadSBML_UnitDefinition_L2(self): @@ -1003,12 +1003,12 @@ def test_ReadSBML_UnitDefinition_L2(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) ud = self.M.getUnitDefinition(0) self.assertEqual( True, ud.isSetId() ) self.assertEqual( True, ud.isSetName() ) - self.assert_(( "mmls" == ud.getId() )) - self.assert_(( "mmol/ls" == ud.getName() )) + self.assertTrue(( "mmls" == ud.getId() )) + self.assertTrue(( "mmol/ls" == ud.getName() )) pass def test_ReadSBML_Unit_L2(self): @@ -1021,17 +1021,17 @@ def test_ReadSBML_Unit_L2(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) ud = self.M.getUnitDefinition(0) self.assertEqual( True, ud.isSetId() ) - self.assert_(( "Fahrenheit" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue(( "Fahrenheit" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_CELSIUS ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == 0 ) - self.assert_( u.getMultiplier() == 1.8 ) - self.assert_( u.getOffset() == 32 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_CELSIUS ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue( u.getMultiplier() == 1.8 ) + self.assertTrue( u.getOffset() == 32 ) pass def test_ReadSBML_Unit_defaults_L1_L2(self): @@ -1042,16 +1042,16 @@ def test_ReadSBML_Unit_defaults_L1_L2(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNumUnitDefinitions() == 1 ) + self.assertTrue( self.M.getNumUnitDefinitions() == 1 ) ud = self.M.getUnitDefinition(0) - self.assert_(( "bogomips" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue(( "bogomips" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_SECOND ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == 0 ) - self.assert_( u.getMultiplier() == 1.0 ) - self.assert_( u.getOffset() == 0.0 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_SECOND ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue( u.getMultiplier() == 1.0 ) + self.assertTrue( u.getOffset() == 0.0 ) pass def test_ReadSBML_annotation(self): @@ -1062,9 +1062,9 @@ def test_ReadSBML_annotation(self): "</annotation>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getAnnotation() != None ) + self.assertTrue( self.M.getAnnotation() != None ) ann = self.M.getAnnotation() - self.assert_( ann.getNumChildren() == 2 ) + self.assertTrue( ann.getNumChildren() == 2 ) pass def test_ReadSBML_annotation_sbml(self): @@ -1079,7 +1079,7 @@ def test_ReadSBML_annotation_sbml(self): " </annotation>" + "</sbml>") self.D = libsbml.readSBMLFromString(s) - self.assert_( self.D.getNumErrors() > 0 ) + self.assertTrue( self.D.getNumErrors() > 0 ) pass def test_ReadSBML_annotation_sbml_L2(self): @@ -1093,7 +1093,7 @@ def test_ReadSBML_annotation_sbml_L2(self): " </sbml>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.D.getNumErrors() == 0 ) + self.assertTrue( self.D.getNumErrors() == 0 ) pass def test_ReadSBML_invalid_default_namespace(self): @@ -1200,10 +1200,10 @@ def test_ReadSBML_invalid_default_namespace(self): " </model>" + " </sbml>") self.D = libsbml.readSBMLFromString(valid) - self.assert_( self.D.getNumErrors() == 0 ) + self.assertTrue( self.D.getNumErrors() == 0 ) _dummyList = [ self.D ]; _dummyList[:] = []; del _dummyList self.D = libsbml.readSBMLFromString(invalid) - self.assert_( self.D.getNumErrors() == 9 ) + self.assertTrue( self.D.getNumErrors() == 9 ) pass def test_ReadSBML_line_col_numbers(self): @@ -1217,7 +1217,7 @@ def test_ReadSBML_line_col_numbers(self): "</sbml>\n") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) sb = self.M sb = self.M.getListOfReactions() sb = self.M.getReaction(0) @@ -1250,31 +1250,31 @@ def test_ReadSBML_metaid(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) sb = self.M.getFunctionDefinition(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "fd" == sb.getMetaId() )) + self.assertTrue(( "fd" == sb.getMetaId() )) sb = self.M.getUnitDefinition(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "ud" == sb.getMetaId() )) + self.assertTrue(( "ud" == sb.getMetaId() )) sb = self.M.getCompartment(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "c" == sb.getMetaId() )) + self.assertTrue(( "c" == sb.getMetaId() )) sb = self.M.getSpecies(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "s" == sb.getMetaId() )) + self.assertTrue(( "s" == sb.getMetaId() )) sb = self.M.getParameter(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "p" == sb.getMetaId() )) + self.assertTrue(( "p" == sb.getMetaId() )) sb = self.M.getRule(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "rr" == sb.getMetaId() )) + self.assertTrue(( "rr" == sb.getMetaId() )) sb = self.M.getReaction(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "rx" == sb.getMetaId() )) + self.assertTrue(( "rx" == sb.getMetaId() )) sb = self.M.getEvent(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "e" == sb.getMetaId() )) + self.assertTrue(( "e" == sb.getMetaId() )) pass def test_ReadSBML_metaid_Event(self): @@ -1287,17 +1287,17 @@ def test_ReadSBML_metaid_Event(self): "</listOfEvents>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) e = self.M.getEvent(0) sb = e self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "e" == sb.getMetaId() )) + self.assertTrue(( "e" == sb.getMetaId() )) sb = e.getListOfEventAssignments() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "loea" == sb.getMetaId() )) + self.assertTrue(( "loea" == sb.getMetaId() )) sb = e.getEventAssignment(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "ea" == sb.getMetaId() )) + self.assertTrue(( "ea" == sb.getMetaId() )) pass def test_ReadSBML_metaid_ListOf(self): @@ -1311,31 +1311,31 @@ def test_ReadSBML_metaid_ListOf(self): "<listOfEvents metaid='loe'/>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) sb = self.M.getListOfFunctionDefinitions() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lofd" == sb.getMetaId() )) + self.assertTrue(( "lofd" == sb.getMetaId() )) sb = self.M.getListOfUnitDefinitions() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "loud" == sb.getMetaId() )) + self.assertTrue(( "loud" == sb.getMetaId() )) sb = self.M.getListOfCompartments() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "loc" == sb.getMetaId() )) + self.assertTrue(( "loc" == sb.getMetaId() )) sb = self.M.getListOfSpecies() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "los" == sb.getMetaId() )) + self.assertTrue(( "los" == sb.getMetaId() )) sb = self.M.getListOfParameters() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lop" == sb.getMetaId() )) + self.assertTrue(( "lop" == sb.getMetaId() )) sb = self.M.getListOfRules() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lor" == sb.getMetaId() )) + self.assertTrue(( "lor" == sb.getMetaId() )) sb = self.M.getListOfReactions() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lorx" == sb.getMetaId() )) + self.assertTrue(( "lorx" == sb.getMetaId() )) sb = self.M.getListOfEvents() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "loe" == sb.getMetaId() )) + self.assertTrue(( "loe" == sb.getMetaId() )) pass def test_ReadSBML_metaid_Reaction(self): @@ -1355,32 +1355,32 @@ def test_ReadSBML_metaid_Reaction(self): "</listOfReactions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) r = self.M.getReaction(0) sb = r self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "r" == sb.getMetaId() )) + self.assertTrue(( "r" == sb.getMetaId() )) sb = r.getListOfReactants() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lor" == sb.getMetaId() )) + self.assertTrue(( "lor" == sb.getMetaId() )) sb = r.getReactant(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "sr1" == sb.getMetaId() )) + self.assertTrue(( "sr1" == sb.getMetaId() )) sb = r.getListOfProducts() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lop" == sb.getMetaId() )) + self.assertTrue(( "lop" == sb.getMetaId() )) sb = r.getProduct(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "sr2" == sb.getMetaId() )) + self.assertTrue(( "sr2" == sb.getMetaId() )) sb = r.getListOfModifiers() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lom" == sb.getMetaId() )) + self.assertTrue(( "lom" == sb.getMetaId() )) sb = r.getModifier(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "msr" == sb.getMetaId() )) + self.assertTrue(( "msr" == sb.getMetaId() )) sb = r.getKineticLaw() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "kl" == sb.getMetaId() )) + self.assertTrue(( "kl" == sb.getMetaId() )) pass def test_ReadSBML_metaid_Unit(self): @@ -1393,17 +1393,17 @@ def test_ReadSBML_metaid_Unit(self): "</listOfUnitDefinitions>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) ud = self.M.getUnitDefinition(0) sb = ud self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "ud" == sb.getMetaId() )) + self.assertTrue(( "ud" == sb.getMetaId() )) sb = ud.getListOfUnits() self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "lou" == sb.getMetaId() )) + self.assertTrue(( "lou" == sb.getMetaId() )) sb = ud.getUnit(0) self.assertEqual( True, sb.isSetMetaId() ) - self.assert_(( "u" == sb.getMetaId() )) + self.assertTrue(( "u" == sb.getMetaId() )) pass def test_ReadSBML_notes(self): @@ -1421,9 +1421,9 @@ def test_ReadSBML_notes(self): self.M = self.D.getModel() r = self.M.getReaction(0) kl = r.getKineticLaw() - self.assert_( kl.getNotes() != None ) + self.assertTrue( kl.getNotes() != None ) notes = kl.getNotes().getChild(0).getCharacters() - self.assert_( ( "This is a test note." != notes ) == False ) + self.assertTrue( ( "This is a test note." != notes ) == False ) pass def test_ReadSBML_notes_ListOf(self): @@ -1441,19 +1441,19 @@ def test_ReadSBML_notes_ListOf(self): "</listOfCompartments>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M != None ) + self.assertTrue( self.M != None ) sb = self.M.getListOfFunctionDefinitions() self.assertEqual( True, sb.isSetNotes() ) notes = sb.getNotes().getChild(0).getCharacters() - self.assert_( ( "My Functions" != notes ) == False ) + self.assertTrue( ( "My Functions" != notes ) == False ) sb = self.M.getListOfUnitDefinitions() self.assertEqual( True, sb.isSetNotes() ) notes = sb.getNotes().getChild(0).getCharacters() - self.assert_( ( "My Units" != notes ) == False ) + self.assertTrue( ( "My Units" != notes ) == False ) sb = self.M.getListOfCompartments() self.assertEqual( True, sb.isSetNotes() ) notes = sb.getNotes().getChild(0).getCharacters() - self.assert_( ( "My Compartments" != notes ) == False ) + self.assertTrue( ( "My Compartments" != notes ) == False ) pass def test_ReadSBML_notes_sbml(self): @@ -1461,10 +1461,10 @@ def test_ReadSBML_notes_sbml(self): " <notes>Notes are not allowed as part of the SBML element.</notes>" + "</sbml>") self.D = libsbml.readSBMLFromString(s) - self.assert_( self.D.getNotes() != None ) + self.assertTrue( self.D.getNotes() != None ) notes = self.D.getNotes().getChild(0).getCharacters() - self.assert_( ( "Notes are not allowed as part of the SBML element." != notes ) == False ) - self.assert_( self.D.getNumErrors() > 0 ) + self.assertTrue( ( "Notes are not allowed as part of the SBML element." != notes ) == False ) + self.assertTrue( self.D.getNumErrors() > 0 ) pass def test_ReadSBML_notes_sbml_L2(self): @@ -1477,8 +1477,8 @@ def test_ReadSBML_notes_sbml_L2(self): " </model>" + " </sbml>") self.D = libsbml.readSBMLFromString(s) - self.assert_( self.D.getNotes() != None ) - self.assert_( self.D.getNumErrors() == 0 ) + self.assertTrue( self.D.getNotes() != None ) + self.assertTrue( self.D.getNumErrors() == 0 ) pass def test_ReadSBML_notes_xmlns(self): @@ -1487,12 +1487,12 @@ def test_ReadSBML_notes_xmlns(self): "</notes>") self.D = libsbml.readSBMLFromString(s) self.M = self.D.getModel() - self.assert_( self.M.getNotes() != None ) + self.assertTrue( self.M.getNotes() != None ) ns = self.M.getNotes().getChild(0).getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_(( "http://www.w3.org/1999/xhtml" == ns.getURI(0) )) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue(( "http://www.w3.org/1999/xhtml" == ns.getURI(0) )) notes = self.M.getNotes().getChild(0).getChild(0).getCharacters() - self.assert_( ( "Some text." != notes ) == False ) + self.assertTrue( ( "Some text." != notes ) == False ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestRule.py b/src/bindings/python/test/sbml/TestRule.py index 99726ae997..ee090eba5e 100644 --- a/src/bindings/python/test/sbml/TestRule.py +++ b/src/bindings/python/test/sbml/TestRule.py @@ -50,25 +50,25 @@ def tearDown(self): pass def test_Rule_init(self): - self.assert_( self.R.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) - self.assert_( self.R.getMetaId() == "" ) - self.assert_( self.R.getNotes() == None ) - self.assert_( self.R.getAnnotation() == None ) - self.assert_( self.R.getFormula() == "" ) - self.assert_( self.R.getMath() == None ) + self.assertTrue( self.R.getTypeCode() == libsbml.SBML_ALGEBRAIC_RULE ) + self.assertTrue( self.R.getMetaId() == "" ) + self.assertTrue( self.R.getNotes() == None ) + self.assertTrue( self.R.getAnnotation() == None ) + self.assertTrue( self.R.getFormula() == "" ) + self.assertTrue( self.R.getMath() == None ) pass def test_Rule_setFormula(self): formula = "k1*X0"; self.R.setFormula(formula) - self.assert_(( formula == self.R.getFormula() )) - self.assert_( self.R.isSetFormula() == True ) + self.assertTrue(( formula == self.R.getFormula() )) + self.assertTrue( self.R.isSetFormula() == True ) if (self.R.getFormula() == formula): pass self.R.setFormula(self.R.getFormula()) - self.assert_(( formula == self.R.getFormula() )) + self.assertTrue(( formula == self.R.getFormula() )) self.R.setFormula( "") - self.assert_( self.R.isSetFormula() == False ) + self.assertTrue( self.R.isSetFormula() == False ) if (self.R.getFormula() != None): pass pass @@ -76,10 +76,10 @@ def test_Rule_setFormula(self): def test_Rule_setMath(self): math = libsbml.parseFormula("1 + 1") self.R.setMath(math) - self.assert_( self.R.getMath() != math ) + self.assertTrue( self.R.getMath() != math ) self.assertEqual( True, self.R.isSetMath() ) self.R.setMath(self.R.getMath()) - self.assert_( self.R.getMath() != math ) + self.assertTrue( self.R.getMath() != math ) self.R.setMath(None) self.assertEqual( False, self.R.isSetMath() ) if (self.R.getMath() != None): diff --git a/src/bindings/python/test/sbml/TestRule_newSetters.py b/src/bindings/python/test/sbml/TestRule_newSetters.py index 9776575556..c3f6913dd5 100644 --- a/src/bindings/python/test/sbml/TestRule_newSetters.py +++ b/src/bindings/python/test/sbml/TestRule_newSetters.py @@ -52,21 +52,21 @@ def tearDown(self): def test_Rule_setFormula1(self): formula = "k1*X0"; i = self.R.setFormula(formula) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( formula == self.R.getFormula() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( formula == self.R.getFormula() )) self.assertEqual( True, self.R.isSetFormula() ) pass def test_Rule_setFormula2(self): i = self.R.setFormula("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetFormula() ) pass def test_Rule_setFormula3(self): formula = "k1 X0"; i = self.R.setFormula(formula) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.R.isSetFormula() ) pass @@ -79,13 +79,13 @@ def test_Rule_setMath1(self): math.addChild(a) math.addChild(b) i = self.R.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.R.isSetMath() ) math1 = self.R.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "a * b" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "a * b" == formula )) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -95,20 +95,20 @@ def test_Rule_setMath2(self): a.setName( "a") math.addChild(a) i = self.R.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.R.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass def test_Rule_setMath3(self): i = self.R.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetMath() ) pass def test_Rule_setUnits1(self): i = self.R.setUnits( "second") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.R.isSetUnits() ) pass @@ -116,10 +116,10 @@ def test_Rule_setUnits2(self): R1 = libsbml.AssignmentRule(1,2) R1.setL1TypeCode(libsbml.SBML_PARAMETER_RULE) i = R1.setUnits( "second") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, R1.isSetUnits() ) i = R1.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, R1.isSetUnits() ) _dummyList = [ R1 ]; _dummyList[:] = []; del _dummyList pass @@ -128,10 +128,10 @@ def test_Rule_setUnits3(self): R1 = libsbml.AssignmentRule(1,2) R1.setL1TypeCode(libsbml.SBML_PARAMETER_RULE) i = R1.setUnits( "1second") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, R1.isSetUnits() ) i = R1.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, R1.isSetUnits() ) _dummyList = [ R1 ]; _dummyList[:] = []; del _dummyList pass @@ -140,33 +140,33 @@ def test_Rule_setUnits4(self): R1 = libsbml.AssignmentRule(1,2) R1.setL1TypeCode(libsbml.SBML_PARAMETER_RULE) i = R1.setUnits( "second") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, R1.isSetUnits() ) i = R1.setUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, R1.isSetUnits() ) _dummyList = [ R1 ]; _dummyList[:] = []; del _dummyList pass def test_Rule_setVariable1(self): i = self.R.setVariable( "1mole") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.R.isSetVariable() ) pass def test_Rule_setVariable2(self): i = self.R.setVariable( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.R.isSetVariable() ) i = self.R.setVariable( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.R.isSetVariable() ) pass def test_Rule_setVariable3(self): R1 = libsbml.AlgebraicRule(1,2) i = R1.setVariable( "r") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, R1.isSetVariable() ) _dummyList = [ R1 ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestSBMLConstructorException.py b/src/bindings/python/test/sbml/TestSBMLConstructorException.py index 5d0d8a992b..6040e71a65 100644 --- a/src/bindings/python/test/sbml/TestSBMLConstructorException.py +++ b/src/bindings/python/test/sbml/TestSBMLConstructorException.py @@ -46,7 +46,7 @@ def test_CompartmentType_constructor(self): except ValueError: s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -142,7 +142,7 @@ def test_Compartment_constructor(self): except ValueError: s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -179,7 +179,7 @@ def test_Constraint_constructor(self): except ValueError: s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -270,7 +270,7 @@ def test_InitialAssignment_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -366,7 +366,7 @@ def test_Species_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -402,7 +402,7 @@ def test_SpeciesType_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -494,7 +494,7 @@ def test_Delay_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -567,7 +567,7 @@ def test_Trigger_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -640,7 +640,7 @@ def test_Event_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -713,7 +713,7 @@ def test_EventAssignment_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -786,7 +786,7 @@ def test_ModifierSpeciesReference_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -857,7 +857,7 @@ def test_StoichiometryMath_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -934,7 +934,7 @@ def test_SpeciesReference_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -973,7 +973,7 @@ def test_FunctionDefinition_constructor(self): except ValueError: s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" try: @@ -1050,7 +1050,7 @@ def test_KineticLaw_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1094,7 +1094,7 @@ def test_Model_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1138,7 +1138,7 @@ def test_Parameter_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1182,7 +1182,7 @@ def test_Reaction_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1226,7 +1226,7 @@ def test_Unit_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1270,7 +1270,7 @@ def test_UnitDefinition_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1314,7 +1314,7 @@ def test_AssignmentRule_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1358,7 +1358,7 @@ def test_AlgebraicRule_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1402,7 +1402,7 @@ def test_RateRule_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1434,7 +1434,7 @@ def test_Priority_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1466,7 +1466,7 @@ def test_LocalParameter_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" @@ -1498,7 +1498,7 @@ def test_SBMLNamespaces_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) pass def test_SBMLDocument_constructor(self): @@ -1522,7 +1522,7 @@ def test_SBMLDocument_constructor(self): inst = sys.exc_info()[1] s = None pass - self.assert_(s != None) + self.assertTrue(s != None) msg = "" diff --git a/src/bindings/python/test/sbml/TestSBMLConvert.py b/src/bindings/python/test/sbml/TestSBMLConvert.py index 115381851b..ce8376d0b4 100644 --- a/src/bindings/python/test/sbml/TestSBMLConvert.py +++ b/src/bindings/python/test/sbml/TestSBMLConvert.py @@ -59,15 +59,15 @@ def test_SBMLConvert_addModifiersToReaction(self): sr1.setSpecies( "S1") sr2.setSpecies( "S2") sr3.setSpecies( "S5") - self.assert_( r.getNumModifiers() == 0 ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) - self.assert_( m.getReaction(0).getNumModifiers() == 2 ) + self.assertTrue( r.getNumModifiers() == 0 ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) + self.assertTrue( m.getReaction(0).getNumModifiers() == 2 ) ssr1 = m.getReaction(0).getModifier(0) ssr2 = m.getReaction(0).getModifier(1) - self.assert_(( "S3" == ssr1.getSpecies() )) - self.assert_(( "S4" == ssr2.getSpecies() )) + self.assertTrue(( "S3" == ssr1.getSpecies() )) + self.assertTrue(( "S4" == ssr2.getSpecies() )) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -80,13 +80,13 @@ def test_SBMLConvert_convertFromL3(self): c.setSize(1.2) c.setConstant(True) c.setSpatialDimensions(3.4) - self.assert_( d.setLevelAndVersion(1,1,True) == False ) - self.assert_( d.setLevelAndVersion(1,2,True) == False ) - self.assert_( d.setLevelAndVersion(2,1,True) == False ) - self.assert_( d.setLevelAndVersion(2,2,True) == False ) - self.assert_( d.setLevelAndVersion(2,3,True) == False ) - self.assert_( d.setLevelAndVersion(2,4,True) == False ) - self.assert_( d.setLevelAndVersion(3,1,True) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,4,True) == False ) + self.assertTrue( d.setLevelAndVersion(3,1,True) == True ) pass def test_SBMLConvert_convertFromL3_conversionFactor(self): @@ -97,13 +97,13 @@ def test_SBMLConvert_convertFromL3_conversionFactor(self): c = m.createParameter() c.setId(sid) c.setConstant(True) - self.assert_( d.setLevelAndVersion(1,1,True) == False ) - self.assert_( d.setLevelAndVersion(1,2,True) == False ) - self.assert_( d.setLevelAndVersion(2,1,True) == False ) - self.assert_( d.setLevelAndVersion(2,2,True) == False ) - self.assert_( d.setLevelAndVersion(2,3,True) == False ) - self.assert_( d.setLevelAndVersion(2,4,True) == False ) - self.assert_( d.setLevelAndVersion(3,1,True) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,4,True) == False ) + self.assertTrue( d.setLevelAndVersion(3,1,True) == True ) pass def test_SBMLConvert_convertFromL3_initialValue(self): @@ -112,27 +112,27 @@ def test_SBMLConvert_convertFromL3_initialValue(self): e = m.createEvent() t = e.createTrigger() t.setInitialValue(False) - self.assert_( d.setLevelAndVersion(1,1,False) == False ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.setLevelAndVersion(2,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(2,4,False) == True ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,4,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) pass def test_SBMLConvert_convertFromL3_modelUnits(self): d = libsbml.SBMLDocument(3,1) m = d.createModel() m.setVolumeUnits( "litre") - self.assert_( m.getNumUnitDefinitions() == 0 ) - self.assert_( d.setLevelAndVersion(2,4,False) == True ) + self.assertTrue( m.getNumUnitDefinitions() == 0 ) + self.assertTrue( d.setLevelAndVersion(2,4,False) == True ) m = d.getModel() - self.assert_( m.getNumUnitDefinitions() == 1 ) + self.assertTrue( m.getNumUnitDefinitions() == 1 ) ud = m.getUnitDefinition(0) - self.assert_(( "volume" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) - self.assert_( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue(( "volume" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getUnit(0).getKind() == libsbml.UNIT_KIND_LITRE ) pass def test_SBMLConvert_convertFromL3_persistent(self): @@ -141,13 +141,13 @@ def test_SBMLConvert_convertFromL3_persistent(self): e = m.createEvent() t = e.createTrigger() t.setPersistent(False) - self.assert_( d.setLevelAndVersion(1,1,False) == False ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.setLevelAndVersion(2,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(2,4,False) == True ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,4,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) pass def test_SBMLConvert_convertFromL3_priority(self): @@ -155,20 +155,20 @@ def test_SBMLConvert_convertFromL3_priority(self): m = d.createModel() e = m.createEvent() p = e.createPriority() - self.assert_( d.setLevelAndVersion(1,1,False) == False ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.setLevelAndVersion(2,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(2,4,False) == True ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,4,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) pass def test_SBMLConvert_convertToL1_SBMLDocument(self): d = libsbml.SBMLDocument(2,1) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 2 ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 2 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -183,8 +183,8 @@ def test_SBMLConvert_convertToL1_Species_Amount(self): s.setCompartment(sid) s.setInitialAmount(2.34) m.addSpecies(s) - self.assert_( d.setLevelAndVersion(1,2,True) == True ) - self.assert_( s.getInitialAmount() == 2.34 ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == True ) + self.assertTrue( s.getInitialAmount() == 2.34 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -201,27 +201,27 @@ def test_SBMLConvert_convertToL1_Species_Concentration(self): s.setCompartment(sid) s.setInitialConcentration(2.34) m.addSpecies(s) - self.assert_( d.setLevelAndVersion(1,2,True) == True ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == True ) s1 = m.getSpecies(0) - self.assert_( s1 != None ) - self.assert_(( "C" == s1.getCompartment() )) - self.assert_( m.getCompartment( "C").getSize() == 1.2 ) - self.assert_( s1.getInitialConcentration() == 2.34 ) - self.assert_( s1.isSetInitialConcentration() == True ) + self.assertTrue( s1 != None ) + self.assertTrue(( "C" == s1.getCompartment() )) + self.assertTrue( m.getCompartment( "C").getSize() == 1.2 ) + self.assertTrue( s1.getInitialConcentration() == 2.34 ) + self.assertTrue( s1.isSetInitialConcentration() == True ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass def test_SBMLConvert_convertToL2_SBMLDocument(self): d = libsbml.SBMLDocument(1,2) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) - self.assert_( d.setLevelAndVersion(2,2,False) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 2 ) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 3 ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) + self.assertTrue( d.setLevelAndVersion(2,2,False) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 2 ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 3 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -230,13 +230,13 @@ def test_SBMLConvert_convertToL2v4_DuplicateAnnotations_doc(self): d.createModel() annotation = "<rdf/>\n<rdf/>"; i = (d).setAnnotation(annotation) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) - self.assert_( (d).getAnnotation().getNumChildren() == 2 ) - self.assert_( d.setLevelAndVersion(2,4,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( (d).getAnnotation().getNumChildren() == 1 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) + self.assertTrue( (d).getAnnotation().getNumChildren() == 2 ) + self.assertTrue( d.setLevelAndVersion(2,4,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( (d).getAnnotation().getNumChildren() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -245,14 +245,14 @@ def test_SBMLConvert_convertToL2v4_DuplicateAnnotations_model(self): m = d.createModel() annotation = "<rdf/>\n<rdf/>"; i = (m).setAnnotation(annotation) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) - self.assert_( (m).getAnnotation().getNumChildren() == 2 ) - self.assert_( d.setLevelAndVersion(2,4,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) + self.assertTrue( (m).getAnnotation().getNumChildren() == 2 ) + self.assertTrue( d.setLevelAndVersion(2,4,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) m = d.getModel() - self.assert_( (m).getAnnotation().getNumChildren() == 1 ) + self.assertTrue( (m).getAnnotation().getNumChildren() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -262,9 +262,9 @@ def test_SBMLConvert_convertToL3_compartment(self): sid = "C"; c = m.createCompartment() c.setId(sid) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) c1 = m.getCompartment(0) - self.assert_( c1.hasRequiredAttributes() == 1 ) + self.assertTrue( c1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -276,28 +276,28 @@ def test_SBMLConvert_convertToL3_defaultUnits(self): c.setId(sid) c.setSize(1.2) c.setUnits( "volume") - self.assert_( m.getNumUnitDefinitions() == 0 ) - self.assert_( d.setLevelAndVersion(3,1,True) == True ) - self.assert_( m.getNumUnitDefinitions() == 2 ) + self.assertTrue( m.getNumUnitDefinitions() == 0 ) + self.assertTrue( d.setLevelAndVersion(3,1,True) == True ) + self.assertTrue( m.getNumUnitDefinitions() == 2 ) ud = m.getUnitDefinition(0) - self.assert_( ud != None ) - self.assert_(( "volume" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud != None ) + self.assertTrue(( "volume" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getMultiplier() == 1 ) - self.assert_( u.getScale() == 0 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getMultiplier() == 1 ) + self.assertTrue( u.getScale() == 0 ) ud = m.getUnitDefinition(1) - self.assert_( ud != None ) - self.assert_(( "area" == ud.getId() )) - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud != None ) + self.assertTrue(( "area" == ud.getId() )) + self.assertTrue( ud.getNumUnits() == 1 ) u = ud.getUnit(0) - self.assert_( u.getKind() == libsbml.UNIT_KIND_METRE ) - self.assert_( u.getExponent() == 2 ) - self.assert_( u.getMultiplier() == 1 ) - self.assert_( u.getScale() == 0 ) - self.assert_(( "second" == m.getTimeUnits() )) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_METRE ) + self.assertTrue( u.getExponent() == 2 ) + self.assertTrue( u.getMultiplier() == 1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue(( "second" == m.getTimeUnits() )) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -305,9 +305,9 @@ def test_SBMLConvert_convertToL3_event(self): d = libsbml.SBMLDocument(2,2) m = d.createModel() e = m.createEvent() - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) e1 = m.getEvent(0) - self.assert_( e1.hasRequiredAttributes() == 1 ) + self.assertTrue( e1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -326,12 +326,12 @@ def test_SBMLConvert_convertToL3_localParameters(self): kl.setFormula( "s*k") p = kl.createParameter() p.setId( "k") - self.assert_( kl.getNumLocalParameters() == 0 ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( kl.getNumLocalParameters() == 0 ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) m = d.getModel() r = m.getReaction(0) kl = r.getKineticLaw() - self.assert_( kl.getNumLocalParameters() == 1 ) + self.assertTrue( kl.getNumLocalParameters() == 1 ) lp = kl.getLocalParameter(0) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -342,9 +342,9 @@ def test_SBMLConvert_convertToL3_parameter(self): sid = "C"; p = m.createParameter() p.setId(sid) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) p1 = m.getParameter(0) - self.assert_( p1.hasRequiredAttributes() == 1 ) + self.assertTrue( p1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -354,9 +354,9 @@ def test_SBMLConvert_convertToL3_product(self): r = m.createReaction() sr = r.createProduct() sr.setSpecies( "s" ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) sr1 = m.getReaction(0).getProduct(0) - self.assert_( sr1.hasRequiredAttributes() == 1 ) + self.assertTrue( sr1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -366,9 +366,9 @@ def test_SBMLConvert_convertToL3_reactant(self): r = m.createReaction() sr = r.createReactant() sr.setSpecies( "s" ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) sr1 = m.getReaction(0).getReactant(0) - self.assert_( sr1.hasRequiredAttributes() == 1 ) + self.assertTrue( sr1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -378,9 +378,9 @@ def test_SBMLConvert_convertToL3_reaction(self): sid = "C"; r = m.createReaction() r.setId(sid) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) r1 = m.getReaction(0) - self.assert_( r1.hasRequiredAttributes() == 1 ) + self.assertTrue( r1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -391,9 +391,9 @@ def test_SBMLConvert_convertToL3_species(self): s = m.createSpecies() s.setId(sid) s.setCompartment( "comp") - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) s1 = m.getSpecies(0) - self.assert_( s1.hasRequiredAttributes() == 1 ) + self.assertTrue( s1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -411,16 +411,16 @@ def test_SBMLConvert_convertToL3_stoichiometryMath(self): sm = sr.createStoichiometryMath() ast = libsbml.parseFormula("c*2") sm.setMath(ast) - self.assert_( m.getNumRules() == 0 ) - self.assert_( sr.isSetId() == False ) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( m.getNumRules() == 0 ) + self.assertTrue( sr.isSetId() == False ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) m = d.getModel() r = m.getReaction(0) sr = r.getReactant(0) - self.assert_( m.getNumRules() == 1 ) - self.assert_( sr.isSetId() == True ) + self.assertTrue( m.getNumRules() == 1 ) + self.assertTrue( sr.isSetId() == True ) rule = m.getRule(0) - self.assert_( sr.getId() == rule.getVariable() ) + self.assertTrue( sr.getId() == rule.getVariable() ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -429,9 +429,9 @@ def test_SBMLConvert_convertToL3_trigger(self): m = d.createModel() e = m.createEvent() t = e.createTrigger() - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) t1 = m.getEvent(0).getTrigger() - self.assert_( t1.hasRequiredAttributes() == 1 ) + self.assertTrue( t1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -443,9 +443,9 @@ def test_SBMLConvert_convertToL3_unit(self): ud.setId(sid) u = ud.createUnit() u.setKind(libsbml.UNIT_KIND_MOLE) - self.assert_( d.setLevelAndVersion(3,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(3,1,False) == True ) u1 = m.getUnitDefinition(0).getUnit(0) - self.assert_( u1.hasRequiredAttributes() == 1 ) + self.assertTrue( u1.hasRequiredAttributes() == 1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -457,10 +457,10 @@ def test_SBMLConvert_invalidLevelVersion(self): c.setId(sid) c.setSize(1.2) c.setUnits( "volume") - self.assert_( d.setLevelAndVersion(1,3,True) == False ) - self.assert_( d.setLevelAndVersion(2,7,True) == False ) - self.assert_( d.setLevelAndVersion(3,5,True) == False ) - self.assert_( d.setLevelAndVersion(4,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(1,3,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,7,True) == False ) + self.assertTrue( d.setLevelAndVersion(3,5,True) == False ) + self.assertTrue( d.setLevelAndVersion(4,1,True) == False ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestSBMLConvertStrict.py b/src/bindings/python/test/sbml/TestSBMLConvertStrict.py index bc1c0ce3de..18bdfbc973 100644 --- a/src/bindings/python/test/sbml/TestSBMLConvertStrict.py +++ b/src/bindings/python/test/sbml/TestSBMLConvertStrict.py @@ -52,11 +52,11 @@ def test_SBMLConvertStrict_convertL1ParamRule(self): ar.setVariable( "p1") ar.setMath(math) ar.setUnits( "mole") - self.assert_( d.setLevelAndVersion(2,1,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.setLevelAndVersion(2,1,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) r1 = d.getModel().getRule(0) - self.assert_( r1.getUnits() == "" ) + self.assertTrue( r1.getUnits() == "" ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -67,22 +67,22 @@ def test_SBMLConvertStrict_convertNonStrictSBO(self): c.setId( "c") c.setConstant(False) (c).setSBOTerm(64) - self.assert_( d.setLevelAndVersion(2,3,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( d.setLevelAndVersion(2,2,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( d.setLevelAndVersion(2,1,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 1 ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(2,1,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 1 ) c1 = d.getModel().getCompartment(0) - self.assert_( (c1).getSBOTerm() == -1 ) - self.assert_( d.setLevelAndVersion(1,2,True) == True ) - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 2 ) + self.assertTrue( (c1).getSBOTerm() == -1 ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == True ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 2 ) c2 = d.getModel().getCompartment(0) - self.assert_( (c2).getSBOTerm() == -1 ) + self.assertTrue( (c2).getSBOTerm() == -1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -99,18 +99,18 @@ def test_SBMLConvertStrict_convertNonStrictUnits(self): ar = m.createAssignmentRule() ar.setVariable( "c") ar.setMath(math) - self.assert_( d.setLevelAndVersion(2,1,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( d.setLevelAndVersion(2,2,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( d.setLevelAndVersion(2,3,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) - self.assert_( d.setLevelAndVersion(1,2,True) == False ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(2,1,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == False ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 4 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -120,14 +120,14 @@ def test_SBMLConvertStrict_convertSBO(self): c = m.createCompartment() c.setId( "c") (c).setSBOTerm(240) - self.assert_( d.setLevelAndVersion(2,3,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 3 ) - self.assert_( d.setLevelAndVersion(2,2,True) == True ) - self.assert_( d.getLevel() == 2 ) - self.assert_( d.getVersion() == 2 ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 3 ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == True ) + self.assertTrue( d.getLevel() == 2 ) + self.assertTrue( d.getVersion() == 2 ) c1 = d.getModel().getCompartment(0) - self.assert_( (c1).getSBOTerm() == -1 ) + self.assertTrue( (c1).getSBOTerm() == -1 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -141,15 +141,15 @@ def test_SBMLConvertStrict_convertToL1(self): s = m.createSpecies() s.setId( "s") s.setCompartment( "c") - self.assert_( d.setLevelAndVersion(1,2,True) == True ) - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 2 ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == True ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 2 ) m1 = d.getModel() - self.assert_( (m1).getMetaId() == "" ) + self.assertTrue( (m1).getMetaId() == "" ) c1 = m1.getCompartment(0) - self.assert_( (c1).getSBOTerm() == -1 ) + self.assertTrue( (c1).getSBOTerm() == -1 ) s1 = m1.getSpecies(0) - self.assert_( s1.getHasOnlySubstanceUnits() == False ) + self.assertTrue( s1.getHasOnlySubstanceUnits() == False ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestSBMLDocument.py b/src/bindings/python/test/sbml/TestSBMLDocument.py index 79bbe69abf..e585197f33 100644 --- a/src/bindings/python/test/sbml/TestSBMLDocument.py +++ b/src/bindings/python/test/sbml/TestSBMLDocument.py @@ -39,23 +39,23 @@ class TestSBMLDocument(unittest.TestCase): def test_SBMLDocument_create(self): d = libsbml.SBMLDocument() - self.assert_( d.getTypeCode() == libsbml.SBML_DOCUMENT ) - self.assert_( d.getNotes() == None ) - self.assert_( d.getAnnotation() == None ) - self.assert_( d.getLevel() == 3 ) - self.assert_( d.getVersion() == 2 ) - self.assert_( d.getNumErrors() == 0 ) + self.assertTrue( d.getTypeCode() == libsbml.SBML_DOCUMENT ) + self.assertTrue( d.getNotes() == None ) + self.assertTrue( d.getAnnotation() == None ) + self.assertTrue( d.getLevel() == 3 ) + self.assertTrue( d.getVersion() == 2 ) + self.assertTrue( d.getNumErrors() == 0 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass def test_SBMLDocument_createWith(self): d = libsbml.SBMLDocument(1,2) - self.assert_( d.getTypeCode() == libsbml.SBML_DOCUMENT ) - self.assert_( d.getNotes() == None ) - self.assert_( d.getAnnotation() == None ) - self.assert_( d.getLevel() == 1 ) - self.assert_( d.getVersion() == 2 ) - self.assert_( d.getNumErrors() == 0 ) + self.assertTrue( d.getTypeCode() == libsbml.SBML_DOCUMENT ) + self.assertTrue( d.getNotes() == None ) + self.assertTrue( d.getAnnotation() == None ) + self.assertTrue( d.getLevel() == 1 ) + self.assertTrue( d.getVersion() == 2 ) + self.assertTrue( d.getNumErrors() == 0 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -67,10 +67,10 @@ def test_SBMLDocument_setLevelAndVersion(self): d = libsbml.SBMLDocument(2,2) m1 = libsbml.Model(2,2) d.setModel(m1) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -86,10 +86,10 @@ def test_SBMLDocument_setLevelAndVersion_Error(self): ud.addUnit(u) m1.addUnitDefinition(ud) d.setModel(m1) - self.assert_( d.setLevelAndVersion(2,2,True) == False ) - self.assert_( d.setLevelAndVersion(2,3,True) == False ) - self.assert_( d.setLevelAndVersion(1,2,True) == False ) - self.assert_( d.setLevelAndVersion(1,1,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(2,3,True) == False ) + self.assertTrue( d.setLevelAndVersion(1,2,True) == False ) + self.assertTrue( d.setLevelAndVersion(1,1,True) == False ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -105,10 +105,10 @@ def test_SBMLDocument_setLevelAndVersion_UnitsError(self): r = m1.createAssignmentRule() r.setVariable( "c") r.setFormula( "p*p") - self.assert_( d.setLevelAndVersion(2,2,False) == True ) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(2,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -117,10 +117,10 @@ def test_SBMLDocument_setLevelAndVersion_Warning(self): m1 = libsbml.Model(2,2) (m1).setSBOTerm(2) d.setModel(m1) - self.assert_( d.setLevelAndVersion(2,3,False) == True ) - self.assert_( d.setLevelAndVersion(2,1,False) == True ) - self.assert_( d.setLevelAndVersion(1,2,False) == True ) - self.assert_( d.setLevelAndVersion(1,1,False) == False ) + self.assertTrue( d.setLevelAndVersion(2,3,False) == True ) + self.assertTrue( d.setLevelAndVersion(2,1,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,2,False) == True ) + self.assertTrue( d.setLevelAndVersion(1,1,False) == False ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -128,22 +128,22 @@ def test_SBMLDocument_setModel(self): d = libsbml.SBMLDocument(2,4) m1 = libsbml.Model(2,4) m2 = libsbml.Model(2,4) - self.assert_( d.getModel() == None ) + self.assertTrue( d.getModel() == None ) i = d.setModel(m1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) mout = d.getModel() - self.assert_( mout != None ) - self.assert_( mout != m1 ) + self.assertTrue( mout != None ) + self.assertTrue( mout != m1 ) i = d.setModel(d.getModel()) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) mout = d.getModel() - self.assert_( mout != None ) - self.assert_( mout != m1 ) + self.assertTrue( mout != None ) + self.assertTrue( mout != m1 ) i = d.setModel(m2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) mout = d.getModel() - self.assert_( mout != None ) - self.assert_( mout != m2 ) + self.assertTrue( mout != None ) + self.assertTrue( mout != m2 ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -151,8 +151,8 @@ def test_SBMLDocument_setModel1(self): d = libsbml.SBMLDocument(2,2) m1 = libsbml.Model(2,1) i = d.setModel(m1) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( d.getModel() == None ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( d.getModel() == None ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -161,8 +161,8 @@ def test_SBMLDocument_setModel2(self): m1 = libsbml.Model(1,2) m1.createCompartment() i = d.setModel(m1) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( d.getModel() == None ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( d.getModel() == None ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass @@ -170,8 +170,8 @@ def test_SBMLDocument_setModel3(self): d = libsbml.SBMLDocument(2,2) m1 = libsbml.Model(2,2) i = d.setModel(m1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( d.getModel() != None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( d.getModel() != None ) _dummyList = [ d ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestSBMLError.py b/src/bindings/python/test/sbml/TestSBMLError.py index e1f53ba9d4..44f0fc3d92 100644 --- a/src/bindings/python/test/sbml/TestSBMLError.py +++ b/src/bindings/python/test/sbml/TestSBMLError.py @@ -39,54 +39,54 @@ class TestSBMLError(unittest.TestCase): def test_SBMLError_create(self): error = libsbml.SBMLError() - self.assert_( error != None ) + self.assertTrue( error != None ) error = None error = libsbml.SBMLError(libsbml.EmptyListInReaction) - self.assert_( error.getErrorId() == libsbml.EmptyListInReaction ) - #self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) - #self.assert_( error.getSeverityAsString() == "Error" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_SBML ) - self.assert_( error.getCategoryAsString() == "General SBML conformance" ) + self.assertTrue( error.getErrorId() == libsbml.EmptyListInReaction ) + #self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) + #self.assertTrue( error.getSeverityAsString() == "Error" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_SBML ) + self.assertTrue( error.getCategoryAsString() == "General SBML conformance" ) error = None error = libsbml.SBMLError(libsbml.OverdeterminedSystem,2,1) - self.assert_( error.getErrorId() == libsbml.OverdeterminedSystem ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_WARNING ) - self.assert_( error.getSeverityAsString() == "Warning" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL ) - self.assert_( error.getCategoryAsString() == "Overdetermined model" ) + self.assertTrue( error.getErrorId() == libsbml.OverdeterminedSystem ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_WARNING ) + self.assertTrue( error.getSeverityAsString() == "Warning" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL ) + self.assertTrue( error.getCategoryAsString() == "Overdetermined model" ) error = None error = libsbml.SBMLError(libsbml.OffsetNoLongerValid,2,2) - self.assert_( error.getErrorId() == libsbml.OffsetNoLongerValid ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) - self.assert_( error.getSeverityAsString() == "Error" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY ) - self.assert_( error.getCategoryAsString() == "SBML component consistency" ) + self.assertTrue( error.getErrorId() == libsbml.OffsetNoLongerValid ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) + self.assertTrue( error.getSeverityAsString() == "Error" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY ) + self.assertTrue( error.getCategoryAsString() == "SBML component consistency" ) error = None error = libsbml.SBMLError(libsbml.NoSBOTermsInL1,2,2) - self.assert_( error.getErrorId() == libsbml.NoSBOTermsInL1 ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_WARNING ) - self.assert_( error.getSeverityAsString() == "Warning" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_SBML_L1_COMPAT ) - self.assert_( error.getCategoryAsString() == "Translation to SBML L1V2" ) + self.assertTrue( error.getErrorId() == libsbml.NoSBOTermsInL1 ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_WARNING ) + self.assertTrue( error.getSeverityAsString() == "Warning" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_SBML_L1_COMPAT ) + self.assertTrue( error.getCategoryAsString() == "Translation to SBML L1V2" ) error = None error = libsbml.SBMLError(libsbml.DisallowedMathMLEncodingUse,2,2) - self.assert_( error.getErrorId() == libsbml.DisallowedMathMLEncodingUse ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) - self.assert_( error.getSeverityAsString() == "Error" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_MATHML_CONSISTENCY ) - self.assert_( error.getShortMessage() == "Use of the MathML 'encoding' attribute is not allowed on this element" ) + self.assertTrue( error.getErrorId() == libsbml.DisallowedMathMLEncodingUse ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) + self.assertTrue( error.getSeverityAsString() == "Error" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_MATHML_CONSISTENCY ) + self.assertTrue( error.getShortMessage() == "Use of the MathML 'encoding' attribute is not allowed on this element" ) error = None error = libsbml.SBMLError(libsbml.DisallowedMathMLEncodingUse,1,2) - self.assert_( error.getErrorId() == libsbml.DisallowedMathMLEncodingUse ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_NOT_APPLICABLE ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_MATHML_CONSISTENCY ) + self.assertTrue( error.getErrorId() == libsbml.DisallowedMathMLEncodingUse ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_NOT_APPLICABLE ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_MATHML_CONSISTENCY ) error = None error = libsbml.SBMLError(libsbml.UnknownError,2,4) - self.assert_( error.getErrorId() == libsbml.UnknownError ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) - self.assert_( error.getSeverityAsString() == "Fatal" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_INTERNAL ) - self.assert_( error.getShortMessage() == "Encountered unknown internal libSBML error" ) + self.assertTrue( error.getErrorId() == libsbml.UnknownError ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) + self.assertTrue( error.getSeverityAsString() == "Fatal" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_INTERNAL ) + self.assertTrue( error.getShortMessage() == "Encountered unknown internal libSBML error" ) error = None pass diff --git a/src/bindings/python/test/sbml/TestSBMLNamespaces.py b/src/bindings/python/test/sbml/TestSBMLNamespaces.py index be5628b1a9..482726a0ed 100644 --- a/src/bindings/python/test/sbml/TestSBMLNamespaces.py +++ b/src/bindings/python/test/sbml/TestSBMLNamespaces.py @@ -39,101 +39,101 @@ class TestSBMLNamespaces(unittest.TestCase): def test_SBMLNamespaces_L1V1(self): sbml = libsbml.SBMLNamespaces(1,1) - self.assert_( sbml.getLevel() == 1 ) - self.assert_( sbml.getVersion() == 1 ) + self.assertTrue( sbml.getLevel() == 1 ) + self.assertTrue( sbml.getVersion() == 1 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level1" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level1" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L1V2(self): sbml = libsbml.SBMLNamespaces(1,2) - self.assert_( sbml.getLevel() == 1 ) - self.assert_( sbml.getVersion() == 2 ) + self.assertTrue( sbml.getLevel() == 1 ) + self.assertTrue( sbml.getVersion() == 2 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level1" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level1" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L2V1(self): sbml = libsbml.SBMLNamespaces(2,1) - self.assert_( sbml.getLevel() == 2 ) - self.assert_( sbml.getVersion() == 1 ) + self.assertTrue( sbml.getLevel() == 2 ) + self.assertTrue( sbml.getVersion() == 1 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level2" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level2" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L2V2(self): sbml = libsbml.SBMLNamespaces(2,2) - self.assert_( sbml.getLevel() == 2 ) - self.assert_( sbml.getVersion() == 2 ) + self.assertTrue( sbml.getLevel() == 2 ) + self.assertTrue( sbml.getVersion() == 2 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version2" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version2" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L2V3(self): sbml = libsbml.SBMLNamespaces(2,3) - self.assert_( sbml.getLevel() == 2 ) - self.assert_( sbml.getVersion() == 3 ) + self.assertTrue( sbml.getLevel() == 2 ) + self.assertTrue( sbml.getVersion() == 3 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version3" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version3" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L2V4(self): sbml = libsbml.SBMLNamespaces(2,4) - self.assert_( sbml.getLevel() == 2 ) - self.assert_( sbml.getVersion() == 4 ) + self.assertTrue( sbml.getLevel() == 2 ) + self.assertTrue( sbml.getVersion() == 4 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version4" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level2/version4" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_L3V1(self): sbml = libsbml.SBMLNamespaces(3,1) - self.assert_( sbml.getLevel() == 3 ) - self.assert_( sbml.getVersion() == 1 ) + self.assertTrue( sbml.getLevel() == 3 ) + self.assertTrue( sbml.getVersion() == 1 ) ns = sbml.getNamespaces() - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level3/version1/core" ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level3/version1/core" ) + self.assertTrue( ns.getPrefix(0) == "" ) sbml = None pass def test_SBMLNamespaces_add_and_remove_namespaces(self): sbmlns = libsbml.SBMLNamespaces( 3,1 ) - self.assert_( sbmlns.getLevel() == 3 ) - self.assert_( sbmlns.getVersion() == 1 ) + self.assertTrue( sbmlns.getLevel() == 3 ) + self.assertTrue( sbmlns.getVersion() == 1 ) sbmlns.addNamespace("http://www.sbml.org/sbml/level3/version1/group/version1", "group") sbmlns.addNamespace("http://www.sbml.org/sbml/level3/version1/layout/version1", "layout") sbmlns.addNamespace("http://www.sbml.org/sbml/level3/version1/render/version1", "render") sbmlns.addNamespace("http://www.sbml.org/sbml/level3/version1/multi/version1", "multi") ns = sbmlns.getNamespaces() - self.assert_( ns.getLength() == 5 ) - self.assert_( ns.getURI(0) == "http://www.sbml.org/sbml/level3/version1/core" ) - self.assert_( ns.getPrefix(0) == "" ) - self.assert_( ns.getURI(1) == "http://www.sbml.org/sbml/level3/version1/group/version1" ) - self.assert_( ns.getPrefix(1) == "group" ) - self.assert_( ns.getURI(2) == "http://www.sbml.org/sbml/level3/version1/layout/version1" ) - self.assert_( ns.getPrefix(2) == "layout" ) - self.assert_( ns.getURI(3) == "http://www.sbml.org/sbml/level3/version1/render/version1" ) - self.assert_( ns.getPrefix(3) == "render" ) - self.assert_( ns.getURI(4) == "http://www.sbml.org/sbml/level3/version1/multi/version1" ) - self.assert_( ns.getPrefix(4) == "multi" ) + self.assertTrue( ns.getLength() == 5 ) + self.assertTrue( ns.getURI(0) == "http://www.sbml.org/sbml/level3/version1/core" ) + self.assertTrue( ns.getPrefix(0) == "" ) + self.assertTrue( ns.getURI(1) == "http://www.sbml.org/sbml/level3/version1/group/version1" ) + self.assertTrue( ns.getPrefix(1) == "group" ) + self.assertTrue( ns.getURI(2) == "http://www.sbml.org/sbml/level3/version1/layout/version1" ) + self.assertTrue( ns.getPrefix(2) == "layout" ) + self.assertTrue( ns.getURI(3) == "http://www.sbml.org/sbml/level3/version1/render/version1" ) + self.assertTrue( ns.getPrefix(3) == "render" ) + self.assertTrue( ns.getURI(4) == "http://www.sbml.org/sbml/level3/version1/multi/version1" ) + self.assertTrue( ns.getPrefix(4) == "multi" ) sbmlns.removeNamespace("http://www.sbml.org/sbml/level3/version1/layout/version1") sbmlns.removeNamespace("http://www.sbml.org/sbml/level3/version1/group/version1") sbmlns.removeNamespace("http://www.sbml.org/sbml/level3/version1/render/version1") @@ -141,13 +141,13 @@ def test_SBMLNamespaces_add_and_remove_namespaces(self): pass def test_SBMLNamespaces_getURI(self): - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(1,1) == "http://www.sbml.org/sbml/level1" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(1,2) == "http://www.sbml.org/sbml/level1" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,1) == "http://www.sbml.org/sbml/level2" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,2) == "http://www.sbml.org/sbml/level2/version2" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,3) == "http://www.sbml.org/sbml/level2/version3" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,4) == "http://www.sbml.org/sbml/level2/version4" ) - self.assert_( libsbml.SBMLNamespaces.getSBMLNamespaceURI(3,1) == "http://www.sbml.org/sbml/level3/version1/core" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(1,1) == "http://www.sbml.org/sbml/level1" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(1,2) == "http://www.sbml.org/sbml/level1" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,1) == "http://www.sbml.org/sbml/level2" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,2) == "http://www.sbml.org/sbml/level2/version2" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,3) == "http://www.sbml.org/sbml/level2/version3" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(2,4) == "http://www.sbml.org/sbml/level2/version4" ) + self.assertTrue( libsbml.SBMLNamespaces.getSBMLNamespaceURI(3,1) == "http://www.sbml.org/sbml/level3/version1/core" ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestSBMLParentObject.py b/src/bindings/python/test/sbml/TestSBMLParentObject.py index 98ff527f19..52837d2acc 100644 --- a/src/bindings/python/test/sbml/TestSBMLParentObject.py +++ b/src/bindings/python/test/sbml/TestSBMLParentObject.py @@ -41,18 +41,18 @@ def test_AlgebraicRule_parent_create(self): m = libsbml.Model(2,4) r = m.createAlgebraicRule() lo = m.getListOfRules() - self.assert_( lo == m.getRule(0).getParentSBMLObject() ) - self.assert_( lo == r.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getRule(0).getParentSBMLObject() ) + self.assertTrue( lo == r.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_AssignmentRule_parent_create(self): m = libsbml.Model(2,4) r = m.createAssignmentRule() lo = m.getListOfRules() - self.assert_( lo == m.getRule(0).getParentSBMLObject() ) - self.assert_( lo == r.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getRule(0).getParentSBMLObject() ) + self.assertTrue( lo == r.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_CompartmentType_parent_NULL(self): @@ -61,9 +61,9 @@ def test_CompartmentType_parent_NULL(self): c = m.createCompartmentType() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -74,17 +74,17 @@ def test_CompartmentType_parent_add(self): m.addCompartmentType(ct) ct = None lo = m.getListOfCompartmentTypes() - self.assert_( lo == m.getCompartmentType(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getCompartmentType(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_CompartmentType_parent_create(self): m = libsbml.Model(2,4) ct = m.createCompartmentType() lo = m.getListOfCompartmentTypes() - self.assert_( lo == m.getCompartmentType(0).getParentSBMLObject() ) - self.assert_( lo == ct.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getCompartmentType(0).getParentSBMLObject() ) + self.assertTrue( lo == ct.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Compartment_parent_NULL(self): @@ -93,9 +93,9 @@ def test_Compartment_parent_NULL(self): c = m.createCompartment() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -106,17 +106,17 @@ def test_Compartment_parent_add(self): m.addCompartment(c) c = None lo = m.getListOfCompartments() - self.assert_( lo == m.getCompartment(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getCompartment(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Compartment_parent_create(self): m = libsbml.Model(2,4) c = m.createCompartment() lo = m.getListOfCompartments() - self.assert_( lo == m.getCompartment(0).getParentSBMLObject() ) - self.assert_( lo == c.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getCompartment(0).getParentSBMLObject() ) + self.assertTrue( lo == c.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Constraint_parent_NULL(self): @@ -125,9 +125,9 @@ def test_Constraint_parent_NULL(self): c = m.createConstraint() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -138,17 +138,17 @@ def test_Constraint_parent_add(self): m.addConstraint(ct) ct = None lo = m.getListOfConstraints() - self.assert_( lo == m.getConstraint(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getConstraint(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Constraint_parent_create(self): m = libsbml.Model(2,4) ct = m.createConstraint() lo = m.getListOfConstraints() - self.assert_( lo == m.getConstraint(0).getParentSBMLObject() ) - self.assert_( lo == ct.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getConstraint(0).getParentSBMLObject() ) + self.assertTrue( lo == ct.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Delay_parent_add(self): @@ -157,7 +157,7 @@ def test_Delay_parent_add(self): e = libsbml.Event(2,4) e.setDelay(d) d = None - self.assert_( e == e.getDelay().getParentSBMLObject() ) + self.assertTrue( e == e.getDelay().getParentSBMLObject() ) e = None pass @@ -169,17 +169,17 @@ def test_EventAssignment_parent_add(self): e.addEventAssignment(ea) ea = None lo = e.getListOfEventAssignments() - self.assert_( lo == e.getEventAssignment(0).getParentSBMLObject() ) - self.assert_( e == lo.getParentSBMLObject() ) + self.assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() ) + self.assertTrue( e == lo.getParentSBMLObject() ) pass def test_EventAssignment_parent_create(self): e = libsbml.Event(2,4) ea = e.createEventAssignment() lo = e.getListOfEventAssignments() - self.assert_( lo == e.getEventAssignment(0).getParentSBMLObject() ) - self.assert_( lo == ea.getParentSBMLObject() ) - self.assert_( e == lo.getParentSBMLObject() ) + self.assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() ) + self.assertTrue( lo == ea.getParentSBMLObject() ) + self.assertTrue( e == lo.getParentSBMLObject() ) pass def test_EventAssignment_parent_create_model(self): @@ -187,9 +187,9 @@ def test_EventAssignment_parent_create_model(self): e = m.createEvent() ea = m.createEventAssignment() lo = e.getListOfEventAssignments() - self.assert_( lo == e.getEventAssignment(0).getParentSBMLObject() ) - self.assert_( lo == ea.getParentSBMLObject() ) - self.assert_( e == lo.getParentSBMLObject() ) + self.assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() ) + self.assertTrue( lo == ea.getParentSBMLObject() ) + self.assertTrue( e == lo.getParentSBMLObject() ) pass def test_Event_parent_NULL(self): @@ -203,27 +203,27 @@ def test_Event_parent_NULL(self): dy.setMath(libsbml.ASTNode()) c.setTrigger(t) c.setDelay(dy) - self.assert_( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( c.getTrigger().getParentSBMLObject() == c ) - self.assert_( c.getDelay().getSBMLDocument() == d ) - self.assert_( ea.getAncestorOfType(libsbml.SBML_EVENT) == c ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( c.getTrigger().getParentSBMLObject() == c ) + self.assertTrue( c.getDelay().getSBMLDocument() == d ) + self.assertTrue( ea.getAncestorOfType(libsbml.SBML_EVENT) == c ) c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) - self.assert_( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_EVENT) == c1 ) - self.assert_( c1.getEventAssignment(0).getParentSBMLObject() != None ) - self.assert_( c1.getEventAssignment(0).getSBMLDocument() == None ) - self.assert_( c1.getTrigger().getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getTrigger().getAncestorOfType(libsbml.SBML_EVENT) == c1 ) - self.assert_( c1.getTrigger().getParentSBMLObject() != None ) - self.assert_( c1.getTrigger().getSBMLDocument() == None ) - self.assert_( c1.getDelay().getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getDelay().getAncestorOfType(libsbml.SBML_EVENT) == c1 ) - self.assert_( c1.getDelay().getParentSBMLObject() != None ) - self.assert_( c1.getDelay().getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getEventAssignment(0).getAncestorOfType(libsbml.SBML_EVENT) == c1 ) + self.assertTrue( c1.getEventAssignment(0).getParentSBMLObject() != None ) + self.assertTrue( c1.getEventAssignment(0).getSBMLDocument() == None ) + self.assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getTrigger().getAncestorOfType(libsbml.SBML_EVENT) == c1 ) + self.assertTrue( c1.getTrigger().getParentSBMLObject() != None ) + self.assertTrue( c1.getTrigger().getSBMLDocument() == None ) + self.assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getDelay().getAncestorOfType(libsbml.SBML_EVENT) == c1 ) + self.assertTrue( c1.getDelay().getParentSBMLObject() != None ) + self.assertTrue( c1.getDelay().getSBMLDocument() == None ) c1 = None pass @@ -237,17 +237,17 @@ def test_Event_parent_add(self): m.addEvent(e) e = None lo = m.getListOfEvents() - self.assert_( lo == m.getEvent(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getEvent(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Event_parent_create(self): m = libsbml.Model(2,4) e = m.createEvent() lo = m.getListOfEvents() - self.assert_( lo == m.getEvent(0).getParentSBMLObject() ) - self.assert_( lo == e.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getEvent(0).getParentSBMLObject() ) + self.assertTrue( lo == e.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_FunctionDefinition_parent_NULL(self): @@ -256,9 +256,9 @@ def test_FunctionDefinition_parent_NULL(self): c = m.createFunctionDefinition() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -270,17 +270,17 @@ def test_FunctionDefinition_parent_add(self): m.addFunctionDefinition(fd) fd = None lo = m.getListOfFunctionDefinitions() - self.assert_( lo == m.getFunctionDefinition(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_FunctionDefinition_parent_create(self): m = libsbml.Model(2,4) fd = m.createFunctionDefinition() lo = m.getListOfFunctionDefinitions() - self.assert_( lo == m.getFunctionDefinition(0).getParentSBMLObject() ) - self.assert_( lo == fd.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getFunctionDefinition(0).getParentSBMLObject() ) + self.assertTrue( lo == fd.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_InitialAssignment_parent_NULL(self): @@ -289,9 +289,9 @@ def test_InitialAssignment_parent_NULL(self): c = m.createInitialAssignment() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -303,17 +303,17 @@ def test_InitialAssignment_parent_add(self): m.addInitialAssignment(ia) ia = None lo = m.getListOfInitialAssignments() - self.assert_( lo == m.getInitialAssignment(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getInitialAssignment(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_InitialAssignment_parent_create(self): m = libsbml.Model(2,4) ia = m.createInitialAssignment() lo = m.getListOfInitialAssignments() - self.assert_( lo == m.getInitialAssignment(0).getParentSBMLObject() ) - self.assert_( lo == ia.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getInitialAssignment(0).getParentSBMLObject() ) + self.assertTrue( lo == ia.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_KineticLaw_Parameter_parent_add(self): @@ -322,22 +322,22 @@ def test_KineticLaw_Parameter_parent_add(self): p.setId("jake") kl.addParameter(p) p = None - self.assert_( kl.getNumParameters() == 1 ) - self.assert_( kl.getParameter(0).getId() == "jake" ) + self.assertTrue( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getParameter(0).getId() == "jake" ) lop = kl.getListOfParameters() - self.assert_( kl == lop.getParentSBMLObject() ) - self.assert_( lop == kl.getParameter(0).getParentSBMLObject() ) + self.assertTrue( kl == lop.getParentSBMLObject() ) + self.assertTrue( lop == kl.getParameter(0).getParentSBMLObject() ) kl = None pass def test_KineticLaw_Parameter_parent_create(self): kl = libsbml.KineticLaw(2,4) p = kl.createParameter() - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 1 ) lop = kl.getListOfParameters() - self.assert_( kl == lop.getParentSBMLObject() ) - self.assert_( lop == p.getParentSBMLObject() ) - self.assert_( lop == kl.getParameter(0).getParentSBMLObject() ) + self.assertTrue( kl == lop.getParentSBMLObject() ) + self.assertTrue( lop == p.getParentSBMLObject() ) + self.assertTrue( lop == kl.getParameter(0).getParentSBMLObject() ) kl = None pass @@ -346,12 +346,12 @@ def test_KineticLaw_Parameter_parent_create_model(self): r = m.createReaction() kl = m.createKineticLaw() p = m.createKineticLawParameter() - self.assert_( kl.getNumParameters() == 1 ) + self.assertTrue( kl.getNumParameters() == 1 ) lop = kl.getListOfParameters() - self.assert_( r == kl.getParentSBMLObject() ) - self.assert_( kl == lop.getParentSBMLObject() ) - self.assert_( lop == p.getParentSBMLObject() ) - self.assert_( lop == kl.getParameter(0).getParentSBMLObject() ) + self.assertTrue( r == kl.getParentSBMLObject() ) + self.assertTrue( kl == lop.getParentSBMLObject() ) + self.assertTrue( lop == p.getParentSBMLObject() ) + self.assertTrue( lop == kl.getParameter(0).getParentSBMLObject() ) kl = None pass @@ -359,13 +359,13 @@ def test_KineticLaw_parent_NULL(self): r = libsbml.Reaction(2,4) kl = r.createKineticLaw() p = kl.createParameter() - self.assert_( r == kl.getParentSBMLObject() ) - self.assert_( r == p.getAncestorOfType(libsbml.SBML_REACTION) ) - self.assert_( kl == p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) ) + self.assertTrue( r == kl.getParentSBMLObject() ) + self.assertTrue( r == p.getAncestorOfType(libsbml.SBML_REACTION) ) + self.assertTrue( kl == p.getAncestorOfType(libsbml.SBML_KINETIC_LAW) ) kl1 = kl.clone() - self.assert_( kl1.getParentSBMLObject() == None ) - self.assert_( kl1.getParameter(0).getAncestorOfType(libsbml.SBML_REACTION) == None ) - self.assert_( kl1 == kl1.getParameter(0).getAncestorOfType(libsbml.SBML_KINETIC_LAW) ) + self.assertTrue( kl1.getParentSBMLObject() == None ) + self.assertTrue( kl1.getParameter(0).getAncestorOfType(libsbml.SBML_REACTION) == None ) + self.assertTrue( kl1 == kl1.getParameter(0).getAncestorOfType(libsbml.SBML_KINETIC_LAW) ) r = None pass @@ -374,14 +374,14 @@ def test_KineticLaw_parent_add(self): kl.setMath(libsbml.parseFormula("1")) r = libsbml.Reaction(2,4) r.setKineticLaw(kl) - self.assert_( r == r.getKineticLaw().getParentSBMLObject() ) + self.assertTrue( r == r.getKineticLaw().getParentSBMLObject() ) r = None pass def test_KineticLaw_parent_create(self): r = libsbml.Reaction(2,4) kl = r.createKineticLaw() - self.assert_( r == kl.getParentSBMLObject() ) + self.assertTrue( r == kl.getParentSBMLObject() ) r = None pass @@ -389,8 +389,8 @@ def test_KineticLaw_parent_create_model(self): m = libsbml.Model(2,4) r = m.createReaction() kl = r.createKineticLaw() - self.assert_( r == kl.getParentSBMLObject() ) - self.assert_( r == r.getKineticLaw().getParentSBMLObject() ) + self.assertTrue( r == kl.getParentSBMLObject() ) + self.assertTrue( r == r.getKineticLaw().getParentSBMLObject() ) r = None pass @@ -398,14 +398,14 @@ def test_Model_parent_add(self): d = libsbml.SBMLDocument(2,4) m = libsbml.Model(2,4) d.setModel(m) - self.assert_( d == d.getModel().getParentSBMLObject() ) + self.assertTrue( d == d.getModel().getParentSBMLObject() ) d = None pass def test_Model_parent_create(self): d = libsbml.SBMLDocument(2,4) m = d.createModel() - self.assert_( d == m.getParentSBMLObject() ) + self.assertTrue( d == m.getParentSBMLObject() ) d = None pass @@ -415,9 +415,9 @@ def test_Parameter_parent_NULL(self): c = m.createParameter() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -428,26 +428,26 @@ def test_Parameter_parent_add(self): m.addParameter(ia) ia = None lo = m.getListOfParameters() - self.assert_( lo == m.getParameter(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getParameter(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Parameter_parent_create(self): m = libsbml.Model(2,4) p = m.createParameter() lo = m.getListOfParameters() - self.assert_( lo == m.getParameter(0).getParentSBMLObject() ) - self.assert_( lo == p.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getParameter(0).getParentSBMLObject() ) + self.assertTrue( lo == p.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_RateRule_parent_create(self): m = libsbml.Model(2,4) r = m.createRateRule() lo = m.getListOfRules() - self.assert_( lo == m.getRule(0).getParentSBMLObject() ) - self.assert_( lo == r.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getRule(0).getParentSBMLObject() ) + self.assertTrue( lo == r.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Reaction_parent_NULL(self): @@ -456,22 +456,22 @@ def test_Reaction_parent_NULL(self): c = m.createReaction() sr = c.createReactant() kl = c.createKineticLaw() - self.assert_( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) - self.assert_( c.getSBMLDocument() == d ) - self.assert_( sr.getAncestorOfType(libsbml.SBML_REACTION) == c ) - self.assert_( kl.getAncestorOfType(libsbml.SBML_REACTION) == c ) + self.assertTrue( c.getAncestorOfType(libsbml.SBML_MODEL) == m ) + self.assertTrue( c.getSBMLDocument() == d ) + self.assertTrue( sr.getAncestorOfType(libsbml.SBML_REACTION) == c ) + self.assertTrue( kl.getAncestorOfType(libsbml.SBML_REACTION) == c ) c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) sr1 = c1.getReactant(0) - self.assert_( sr1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( sr1.getAncestorOfType(libsbml.SBML_REACTION) == c1 ) - self.assert_( sr1.getSBMLDocument() == None ) - self.assert_( c1.getKineticLaw().getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getKineticLaw().getAncestorOfType(libsbml.SBML_REACTION) == c1 ) - self.assert_( c1.getKineticLaw().getSBMLDocument() == None ) + self.assertTrue( sr1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( sr1.getAncestorOfType(libsbml.SBML_REACTION) == c1 ) + self.assertTrue( sr1.getSBMLDocument() == None ) + self.assertTrue( c1.getKineticLaw().getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getKineticLaw().getAncestorOfType(libsbml.SBML_REACTION) == c1 ) + self.assertTrue( c1.getKineticLaw().getSBMLDocument() == None ) c1 = None pass @@ -482,17 +482,17 @@ def test_Reaction_parent_add(self): m.addReaction(ia) ia = None lo = m.getListOfReactions() - self.assert_( lo == m.getReaction(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getReaction(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Reaction_parent_create(self): m = libsbml.Model(2,4) r = m.createReaction() lo = m.getListOfReactions() - self.assert_( lo == m.getReaction(0).getParentSBMLObject() ) - self.assert_( lo == r.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getReaction(0).getParentSBMLObject() ) + self.assertTrue( lo == r.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Rule_parent_add(self): @@ -503,8 +503,8 @@ def test_Rule_parent_add(self): m.addRule(ia) ia = None lo = m.getListOfRules() - self.assert_( lo == m.getRule(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getRule(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Modifier_parent_add(self): @@ -514,17 +514,17 @@ def test_SpeciesReference_Modifier_parent_add(self): r.addModifier(sr) sr = None lo = r.getListOfModifiers() - self.assert_( lo == r.getModifier(0).getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getModifier(0).getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Modifier_parent_create(self): r = libsbml.Reaction(2,4) sr = r.createModifier() lo = r.getListOfModifiers() - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( lo == r.getModifier(0).getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( lo == r.getModifier(0).getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Modifier_parent_create_model(self): @@ -532,9 +532,9 @@ def test_SpeciesReference_Modifier_parent_create_model(self): r = m.createReaction() sr = m.createModifier() lo = r.getListOfModifiers() - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( lo == r.getModifier(0).getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( lo == r.getModifier(0).getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Product_parent_add(self): @@ -544,17 +544,17 @@ def test_SpeciesReference_Product_parent_add(self): r.addProduct(sr) sr = None lo = r.getListOfProducts() - self.assert_( lo == r.getProduct(0).getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getProduct(0).getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Product_parent_create(self): r = libsbml.Reaction(2,4) sr = r.createProduct() lo = r.getListOfProducts() - self.assert_( lo == r.getProduct(0).getParentSBMLObject() ) - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getProduct(0).getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Product_parent_create_model(self): @@ -562,9 +562,9 @@ def test_SpeciesReference_Product_parent_create_model(self): r = m.createReaction() sr = m.createProduct() lo = r.getListOfProducts() - self.assert_( lo == r.getProduct(0).getParentSBMLObject() ) - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getProduct(0).getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Reactant_parent_add(self): @@ -574,17 +574,17 @@ def test_SpeciesReference_Reactant_parent_add(self): r.addReactant(sr) sr = None lo = r.getListOfReactants() - self.assert_( lo == r.getReactant(0).getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getReactant(0).getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Reactant_parent_create(self): r = libsbml.Reaction(2,4) sr = r.createReactant() lo = r.getListOfReactants() - self.assert_( lo == r.getReactant(0).getParentSBMLObject() ) - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getReactant(0).getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesReference_Reactant_parent_create_model(self): @@ -592,9 +592,9 @@ def test_SpeciesReference_Reactant_parent_create_model(self): r = m.createReaction() sr = m.createReactant() lo = r.getListOfReactants() - self.assert_( lo == r.getReactant(0).getParentSBMLObject() ) - self.assert_( lo == sr.getParentSBMLObject() ) - self.assert_( r == lo.getParentSBMLObject() ) + self.assertTrue( lo == r.getReactant(0).getParentSBMLObject() ) + self.assertTrue( lo == sr.getParentSBMLObject() ) + self.assertTrue( r == lo.getParentSBMLObject() ) pass def test_SpeciesType_parent_NULL(self): @@ -603,9 +603,9 @@ def test_SpeciesType_parent_NULL(self): c = m.createSpeciesType() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -616,17 +616,17 @@ def test_SpeciesType_parent_add(self): m.addSpeciesType(ia) ia = None lo = m.getListOfSpeciesTypes() - self.assert_( lo == m.getSpeciesType(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getSpeciesType(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_SpeciesType_parent_create(self): m = libsbml.Model(2,4) st = m.createSpeciesType() lo = m.getListOfSpeciesTypes() - self.assert_( lo == m.getSpeciesType(0).getParentSBMLObject() ) - self.assert_( lo == st.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getSpeciesType(0).getParentSBMLObject() ) + self.assertTrue( lo == st.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Species_parent_NULL(self): @@ -635,9 +635,9 @@ def test_Species_parent_NULL(self): c = m.createSpecies() c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) c1 = None pass @@ -649,17 +649,17 @@ def test_Species_parent_add(self): m.addSpecies(ia) ia = None lo = m.getListOfSpecies() - self.assert_( lo == m.getSpecies(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getSpecies(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Species_parent_create(self): m = libsbml.Model(2,4) s = m.createSpecies() lo = m.getListOfSpecies() - self.assert_( lo == s.getParentSBMLObject() ) - self.assert_( lo == m.getSpecies(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == s.getParentSBMLObject() ) + self.assertTrue( lo == m.getSpecies(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_StoichiometryMath_parent_add(self): @@ -668,7 +668,7 @@ def test_StoichiometryMath_parent_add(self): sr = libsbml.SpeciesReference(2,4) sr.setStoichiometryMath(m) m = None - self.assert_( sr == sr.getStoichiometryMath().getParentSBMLObject() ) + self.assertTrue( sr == sr.getStoichiometryMath().getParentSBMLObject() ) sr = None pass @@ -678,7 +678,7 @@ def test_Trigger_parent_add(self): e = libsbml.Event(2,4) e.setTrigger(d) d = None - self.assert_( e == e.getTrigger().getParentSBMLObject() ) + self.assertTrue( e == e.getTrigger().getParentSBMLObject() ) e = None pass @@ -687,15 +687,15 @@ def test_UnitDefinition_parent_NULL(self): m = d.createModel() c = m.createUnitDefinition() u = c.createUnit() - self.assert_( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == c ) + self.assertTrue( u.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == c ) c1 = c.clone() d = None - self.assert_( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) - self.assert_( c1.getParentSBMLObject() == None ) - self.assert_( c1.getSBMLDocument() == None ) - self.assert_( c1.getUnit(0).getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == c1 ) - self.assert_( c1.getUnit(0).getParentSBMLObject() != None ) - self.assert_( c1.getUnit(0).getSBMLDocument() == None ) + self.assertTrue( c1.getAncestorOfType(libsbml.SBML_MODEL) == None ) + self.assertTrue( c1.getParentSBMLObject() == None ) + self.assertTrue( c1.getSBMLDocument() == None ) + self.assertTrue( c1.getUnit(0).getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == c1 ) + self.assertTrue( c1.getUnit(0).getParentSBMLObject() != None ) + self.assertTrue( c1.getUnit(0).getSBMLDocument() == None ) c1 = None pass @@ -707,17 +707,17 @@ def test_UnitDefinition_parent_add(self): m.addUnitDefinition(ia) ia = None lo = m.getListOfUnitDefinitions() - self.assert_( lo == m.getUnitDefinition(0).getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_UnitDefinition_parent_create(self): m = libsbml.Model(2,4) ud = m.createUnitDefinition() lo = m.getListOfUnitDefinitions() - self.assert_( lo == m.getUnitDefinition(0).getParentSBMLObject() ) - self.assert_( lo == ud.getParentSBMLObject() ) - self.assert_( m == lo.getParentSBMLObject() ) + self.assertTrue( lo == m.getUnitDefinition(0).getParentSBMLObject() ) + self.assertTrue( lo == ud.getParentSBMLObject() ) + self.assertTrue( m == lo.getParentSBMLObject() ) pass def test_Unit_parent_add(self): @@ -726,21 +726,21 @@ def test_Unit_parent_add(self): u.setKind(libsbml.UNIT_KIND_MOLE) ud.addUnit(u) u = None - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() - self.assert_( lo == ud.getUnit(0).getParentSBMLObject() ) - self.assert_( ud == lo.getParentSBMLObject() ) + self.assertTrue( lo == ud.getUnit(0).getParentSBMLObject() ) + self.assertTrue( ud == lo.getParentSBMLObject() ) ud = None pass def test_Unit_parent_create(self): ud = libsbml.UnitDefinition(2,4) u = ud.createUnit() - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() - self.assert_( lo == ud.getUnit(0).getParentSBMLObject() ) - self.assert_( lo == u.getParentSBMLObject() ) - self.assert_( ud == lo.getParentSBMLObject() ) + self.assertTrue( lo == ud.getUnit(0).getParentSBMLObject() ) + self.assertTrue( lo == u.getParentSBMLObject() ) + self.assertTrue( ud == lo.getParentSBMLObject() ) ud = None pass @@ -748,11 +748,11 @@ def test_Unit_parent_create_model(self): m = libsbml.Model(2,4) ud = m.createUnitDefinition() u = m.createUnit() - self.assert_( ud.getNumUnits() == 1 ) + self.assertTrue( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() - self.assert_( lo == ud.getUnit(0).getParentSBMLObject() ) - self.assert_( lo == u.getParentSBMLObject() ) - self.assert_( ud == lo.getParentSBMLObject() ) + self.assertTrue( lo == ud.getUnit(0).getParentSBMLObject() ) + self.assertTrue( lo == u.getParentSBMLObject() ) + self.assertTrue( ud == lo.getParentSBMLObject() ) ud = None pass diff --git a/src/bindings/python/test/sbml/TestSBase.py b/src/bindings/python/test/sbml/TestSBase.py index 718fcc0b80..46711fdcb7 100644 --- a/src/bindings/python/test/sbml/TestSBase.py +++ b/src/bindings/python/test/sbml/TestSBase.py @@ -57,15 +57,15 @@ def test_SBase_CVTerms(self): cv = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv.setBiologicalQualifierType(libsbml.BQB_IS) cv.addResource( "foo") - self.assert_( self.S.getNumCVTerms() == 0 ) - #self.assert_( self.S.getCVTerms() == None ) - self.assert_( len(self.S.getCVTerms()) == 0 ) + self.assertTrue( self.S.getNumCVTerms() == 0 ) + #self.assertTrue( self.S.getCVTerms() == None ) + self.assertTrue( len(self.S.getCVTerms()) == 0 ) self.S.setMetaId( "_id") self.S.addCVTerm(cv) - self.assert_( self.S.getNumCVTerms() == 1 ) - #self.assert_( self.S.getCVTerms() != None ) - self.assert_( len(self.S.getCVTerms()) == 1 ) - self.assert_( self.S.getCVTerm(0) != cv ) + self.assertTrue( self.S.getNumCVTerms() == 1 ) + #self.assertTrue( self.S.getCVTerms() != None ) + self.assertTrue( len(self.S.getCVTerms()) == 1 ) + self.assertTrue( self.S.getCVTerm(0) != cv ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList pass @@ -75,43 +75,43 @@ def test_SBase_addCVTerms(self): cv.addResource( "foo") self.S.setMetaId( "sbase1") self.S.addCVTerm(cv) - self.assert_( self.S.getNumCVTerms() == 1 ) - #self.assert_( self.S.getCVTerms() != None ) - self.assert_( len(self.S.getCVTerms()) == 1 ) + self.assertTrue( self.S.getNumCVTerms() == 1 ) + #self.assertTrue( self.S.getCVTerms() != None ) + self.assertTrue( len(self.S.getCVTerms()) == 1 ) res = self.S.getCVTerm(0).getResources() - self.assert_(( "foo" == res.getValue(0) )) + self.assertTrue(( "foo" == res.getValue(0) )) cv1 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv1.setBiologicalQualifierType(libsbml.BQB_IS) cv1.addResource( "bar") self.S.addCVTerm(cv1) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) cv2 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv2.setBiologicalQualifierType(libsbml.BQB_IS) cv2.addResource( "bar1") self.S.addCVTerm(cv2) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) res = self.S.getCVTerm(1).getResources() - self.assert_( res.getLength() == 2 ) - self.assert_(( "bar" == res.getValue(0) )) - self.assert_(( "bar1" == res.getValue(1) )) + self.assertTrue( res.getLength() == 2 ) + self.assertTrue(( "bar" == res.getValue(0) )) + self.assertTrue(( "bar1" == res.getValue(1) )) cv4 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv4.setBiologicalQualifierType(libsbml.BQB_IS) cv4.addResource( "bar1") self.S.addCVTerm(cv4) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) res = self.S.getCVTerm(1).getResources() - self.assert_( res.getLength() == 2 ) - self.assert_(( "bar" == res.getValue(0) )) - self.assert_(( "bar1" == res.getValue(1) )) + self.assertTrue( res.getLength() == 2 ) + self.assertTrue(( "bar" == res.getValue(0) )) + self.assertTrue(( "bar1" == res.getValue(1) )) cv5 = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv5.setBiologicalQualifierType(libsbml.BQB_HAS_PART) cv5.addResource( "bar1") self.S.addCVTerm(cv5) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) res = self.S.getCVTerm(1).getResources() - self.assert_( res.getLength() == 2 ) - self.assert_(( "bar" == res.getValue(0) )) - self.assert_(( "bar1" == res.getValue(1) )) + self.assertTrue( res.getLength() == 2 ) + self.assertTrue(( "bar" == res.getValue(0) )) + self.assertTrue(( "bar1" == res.getValue(1) )) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv1 ]; _dummyList[:] = []; del _dummyList @@ -131,22 +131,22 @@ def test_SBase_appendNotes(self): node = libsbml.XMLNode(token) node.addChild(node4) self.S.setNotes(node) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( self.S.isSetNotes() == True ) token1 = libsbml.XMLToken(triple,att,ns) node1 = libsbml.XMLNode(token1) node1.addChild(node5) self.S.appendNotes(node1) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( self.S.isSetNotes() == True ) node2 = self.S.getNotes() - self.assert_( node2.getNumChildren() == 2 ) - self.assert_(( "p" == node2.getChild(0).getName() )) - self.assert_( node2.getChild(0).getNumChildren() == 1 ) - self.assert_(( "p" == node2.getChild(1).getName() )) - self.assert_( node2.getChild(1).getNumChildren() == 1 ) + self.assertTrue( node2.getNumChildren() == 2 ) + self.assertTrue(( "p" == node2.getChild(0).getName() )) + self.assertTrue( node2.getChild(0).getNumChildren() == 1 ) + self.assertTrue(( "p" == node2.getChild(1).getName() )) + self.assertTrue( node2.getChild(1).getNumChildren() == 1 ) chars1 = node2.getChild(0).getChild(0).getCharacters() chars2 = node2.getChild(1).getChild(0).getCharacters() - self.assert_(( "This is my text" == chars1 )) - self.assert_(( "This is additional text" == chars2 )) + self.assertTrue(( "This is my text" == chars1 )) + self.assertTrue(( "This is additional text" == chars2 )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node1 ]; _dummyList[:] = []; del _dummyList pass @@ -192,26 +192,26 @@ def test_SBase_appendNotes1(self): self.S.setNotes(html_node) self.S.appendNotes(html_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -272,26 +272,26 @@ def test_SBase_appendNotes2(self): self.S.setNotes(html_node) self.S.appendNotes(body_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -349,26 +349,26 @@ def test_SBase_appendNotes3(self): self.S.setNotes(html_node) self.S.appendNotes(p_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -427,26 +427,26 @@ def test_SBase_appendNotes4(self): self.S.setNotes(body_node) self.S.appendNotes(html_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -502,26 +502,26 @@ def test_SBase_appendNotes5(self): self.S.setNotes(p_node) self.S.appendNotes(html_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -565,23 +565,23 @@ def test_SBase_appendNotes6(self): self.S.setNotes(body_node) self.S.appendNotes(body_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -620,23 +620,23 @@ def test_SBase_appendNotes7(self): self.S.setNotes(p_node) self.S.appendNotes(body_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -675,23 +675,23 @@ def test_SBase_appendNotes8(self): self.S.setNotes(body_node) self.S.appendNotes(p_node1) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -724,26 +724,26 @@ def test_SBase_appendNotesString(self): " <p xmlns=\"http://www.w3.org/1999/xhtml\">This is more test notes 2</p>\n" + "</notes>") self.S.setNotes(notes) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( self.S.isSetNotes() == True ) self.S.appendNotes(newnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(newnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes2 )) self.S.setNotes(notes) self.S.appendNotes(newnotes3) notes3 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes3 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes3 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(newnotes4) notes4 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes4 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes4 == taggednewnotes2 )) pass def test_SBase_appendNotesString1(self): @@ -785,13 +785,13 @@ def test_SBase_appendNotesString1(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString2(self): @@ -822,13 +822,13 @@ def test_SBase_appendNotesString2(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString3(self): @@ -871,23 +871,23 @@ def test_SBase_appendNotesString3(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes2 )) self.S.setNotes(notes) self.S.appendNotes(addnotes3) notes3 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes3 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes3 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes4) notes4 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes4 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes4 == taggednewnotes2 )) pass def test_SBase_appendNotesString4(self): @@ -923,13 +923,13 @@ def test_SBase_appendNotesString4(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString5(self): @@ -965,13 +965,13 @@ def test_SBase_appendNotesString5(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString6(self): @@ -991,13 +991,13 @@ def test_SBase_appendNotesString6(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString7(self): @@ -1017,13 +1017,13 @@ def test_SBase_appendNotesString7(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes )) pass def test_SBase_appendNotesString8(self): @@ -1053,23 +1053,23 @@ def test_SBase_appendNotesString8(self): self.S.setNotes(notes) self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes2) notes2 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes2 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes2 == taggednewnotes2 )) self.S.setNotes(notes) self.S.appendNotes(addnotes3) notes3 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes3 == taggednewnotes )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes3 == taggednewnotes )) self.S.setNotes(notes) self.S.appendNotes(addnotes4) notes4 = self.S.getNotesString() - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes4 == taggednewnotes2 )) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes4 == taggednewnotes2 )) pass def test_SBase_getQualifiersFromResources(self): @@ -1078,12 +1078,12 @@ def test_SBase_getQualifiersFromResources(self): cv.addResource( "foo") self.S.setMetaId( "sbase1") self.S.addCVTerm(cv) - self.assert_( self.S.getResourceBiologicalQualifier( "foo") == libsbml.BQB_ENCODES ) + self.assertTrue( self.S.getResourceBiologicalQualifier( "foo") == libsbml.BQB_ENCODES ) cv1 = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) cv1.setModelQualifierType(libsbml.BQM_IS) cv1.addResource( "bar") self.S.addCVTerm(cv1) - self.assert_( self.S.getResourceModelQualifier( "bar") == libsbml.BQM_IS ) + self.assertTrue( self.S.getResourceModelQualifier( "bar") == libsbml.BQM_IS ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv1 ]; _dummyList[:] = []; del _dummyList pass @@ -1092,38 +1092,38 @@ def test_SBase_setAnnotation(self): token = libsbml.XMLToken("This is a test note") node = libsbml.XMLNode(token) self.S.setAnnotation(node) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( self.S.isSetAnnotation() == True ) t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) - self.assert_(( "This is a test note" == t1.getChild(0).getCharacters() )) + self.assertTrue( t1.getNumChildren() == 1 ) + self.assertTrue(( "This is a test note" == t1.getChild(0).getCharacters() )) if (self.S.getAnnotation() == node): pass self.S.setAnnotation(self.S.getAnnotation()) - self.assert_(( "This is a test note" == self.S.getAnnotation().getChild(0).getCharacters() )) + self.assertTrue(( "This is a test note" == self.S.getAnnotation().getChild(0).getCharacters() )) self.S.setAnnotation(None) - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.isSetAnnotation() == False ) if (self.S.getAnnotation() != None): pass self.S.setAnnotation(node) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( self.S.isSetAnnotation() == True ) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.isSetAnnotation() == False ) token = libsbml.XMLToken("(CR) ¨ ¨ ¨ (NOT CR) &#; &#x; �a8; ¨ ¨") node = libsbml.XMLNode(token) self.S.setAnnotation(node) t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) s = t1.getChild(0).toXMLString() expected = "(CR) ¨ ¨ ¨ (NOT CR) &#; &#x; &#00a8; &#0168 &#x00a8"; - self.assert_(( expected == s )) + self.assertTrue(( expected == s )) token = libsbml.XMLToken("& ' > < \" & ' > < "") node = libsbml.XMLNode(token) self.S.setAnnotation(node) t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) s2 = t1.getChild(0).toXMLString() expected2 = "& ' > < " & ' > < ""; - self.assert_(( expected2 == s2 )) + self.assertTrue(( expected2 == s2 )) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -1132,40 +1132,40 @@ def test_SBase_setAnnotationString(self): annotation = "This is a test note"; taggedannotation = "<annotation>This is a test note</annotation>"; self.S.setAnnotation(annotation) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( self.S.isSetAnnotation() == True ) if (( taggedannotation != self.S.getAnnotationString() )): pass t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) - self.assert_(( "This is a test note" == t1.getChild(0).getCharacters() )) + self.assertTrue( t1.getNumChildren() == 1 ) + self.assertTrue(( "This is a test note" == t1.getChild(0).getCharacters() )) self.S.setAnnotation(self.S.getAnnotationString()) t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) chars = self.S.getAnnotationString() - self.assert_(( taggedannotation == chars )) + self.assertTrue(( taggedannotation == chars )) self.S.setAnnotation( "") - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.isSetAnnotation() == False ) if (self.S.getAnnotationString() != None): pass self.S.setAnnotation(taggedannotation) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( self.S.isSetAnnotation() == True ) if (( taggedannotation != self.S.getAnnotationString() )): pass t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) t2 = t1.getChild(0) - self.assert_(( "This is a test note" == t2.getCharacters() )) + self.assertTrue(( "This is a test note" == t2.getCharacters() )) pass def test_SBase_setMetaId(self): metaid = "x12345"; self.S.setMetaId(metaid) - self.assert_(( metaid == self.S.getMetaId() )) + self.assertTrue(( metaid == self.S.getMetaId() )) self.assertEqual( True, self.S.isSetMetaId() ) if (self.S.getMetaId() == metaid): pass self.S.setMetaId(self.S.getMetaId()) - self.assert_(( metaid == self.S.getMetaId() )) + self.assertTrue(( metaid == self.S.getMetaId() )) self.S.setMetaId("") self.assertEqual( False, self.S.isSetMetaId() ) if (self.S.getMetaId() != None): @@ -1177,39 +1177,39 @@ def test_SBase_setNotes(self): token = libsbml.XMLToken("This is a test note") node = libsbml.XMLNode(token) c.setNotes(node) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) if (c.getNotes() == node): pass t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) - self.assert_(( "This is a test note" == t1.getChild(0).getCharacters() )) + self.assertTrue( t1.getNumChildren() == 1 ) + self.assertTrue(( "This is a test note" == t1.getChild(0).getCharacters() )) c.setNotes(c.getNotes()) t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) chars = t1.getChild(0).getCharacters() - self.assert_(( "This is a test note" == chars )) + self.assertTrue(( "This is a test note" == chars )) c.setNotes(None) - self.assert_( c.isSetNotes() == False ) + self.assertTrue( c.isSetNotes() == False ) if (c.getNotes() != None): pass c.setNotes(node) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) token = libsbml.XMLToken("(CR) ¨ ¨ ¨ (NOT CR) &#; &#x; �a8; ¨ ¨") node = libsbml.XMLNode(token) c.setNotes(node) t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) s = t1.getChild(0).toXMLString() expected = "(CR) ¨ ¨ ¨ (NOT CR) &#; &#x; &#00a8; &#0168 &#x00a8"; - self.assert_(( expected == s )) + self.assertTrue(( expected == s )) token = libsbml.XMLToken("& ' > < \" & ' > < "") node = libsbml.XMLNode(token) c.setNotes(node) t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) s2 = t1.getChild(0).toXMLString() expected2 = "& ' > < " & ' > < ""; - self.assert_(( expected2 == s2 )) + self.assertTrue(( expected2 == s2 )) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -1219,37 +1219,37 @@ def test_SBase_setNotesString(self): notes = "This is a test note"; taggednotes = "<notes>This is a test note</notes>"; c.setNotes(notes) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) if (( taggednotes != c.getNotesString() )): pass t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) t2 = t1.getChild(0) - self.assert_(( "This is a test note" == t2.getCharacters() )) + self.assertTrue(( "This is a test note" == t2.getCharacters() )) c.setNotes(c.getNotesString()) t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) chars = c.getNotesString() - self.assert_(( taggednotes == chars )) + self.assertTrue(( taggednotes == chars )) c.setNotes("") - self.assert_( c.isSetNotes() == False ) + self.assertTrue( c.isSetNotes() == False ) if (c.getNotesString() != None): pass c.setNotes(taggednotes) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) if (( taggednotes != c.getNotesString() )): pass t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) t2 = t1.getChild(0) - self.assert_(( "This is a test note" == t2.getCharacters() )) + self.assertTrue(( "This is a test note" == t2.getCharacters() )) pass def test_SBase_setNotesString_l3(self): c = libsbml.Model(3,1) notes = "This is a test note"; c.setNotes(notes) - self.assert_( c.isSetNotes() == False ) + self.assertTrue( c.isSetNotes() == False ) pass def test_SBase_setNotesString_l3_addMarkup(self): @@ -1258,34 +1258,34 @@ def test_SBase_setNotesString_l3_addMarkup(self): taggednotes = wrapString("<notes>\n" + " <p xmlns=\"http://www.w3.org/1999/xhtml\">This is a test note</p>\n" + "</notes>") c.setNotes(notes, True) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) if (( taggednotes != c.getNotesString() )): pass t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) t2 = t1.getChild(0) - self.assert_( t2.getNumChildren() == 1 ) + self.assertTrue( t2.getNumChildren() == 1 ) t3 = t2.getChild(0) - self.assert_(( "This is a test note" == t3.getCharacters() )) + self.assertTrue(( "This is a test note" == t3.getCharacters() )) c.setNotes(c.getNotesString(), True) t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) chars = c.getNotesString() - self.assert_(( taggednotes == chars )) + self.assertTrue(( taggednotes == chars )) c.setNotes("", True) - self.assert_( c.isSetNotes() == False ) + self.assertTrue( c.isSetNotes() == False ) if (c.getNotesString() != None): pass c.setNotes(taggednotes, True) - self.assert_( c.isSetNotes() == True ) + self.assertTrue( c.isSetNotes() == True ) if (( taggednotes != c.getNotesString() )): pass t1 = c.getNotes() - self.assert_( t1.getNumChildren() == 1 ) + self.assertTrue( t1.getNumChildren() == 1 ) t2 = t1.getChild(0) - self.assert_( t2.getNumChildren() == 1 ) + self.assertTrue( t2.getNumChildren() == 1 ) t3 = t2.getChild(0) - self.assert_(( "This is a test note" == t3.getCharacters() )) + self.assertTrue(( "This is a test note" == t3.getCharacters() )) pass def test_SBase_unsetAnnotationWithCVTerms(self): @@ -1310,22 +1310,22 @@ def test_SBase_unsetAnnotationWithCVTerms(self): " </rdf:RDF>\n" + "</annotation>") self.S.setAnnotation(annt) - self.assert_( self.S.isSetAnnotation() == True ) - self.assert_(( annt == self.S.getAnnotationString() )) + self.assertTrue( self.S.isSetAnnotation() == True ) + self.assertTrue(( annt == self.S.getAnnotationString() )) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) - self.assert_( self.S.getAnnotation() == None ) + self.assertTrue( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.getAnnotation() == None ) self.S.setAnnotation(annt) self.S.setMetaId( "_000001") cv = libsbml.CVTerm(libsbml.BIOLOGICAL_QUALIFIER) cv.setBiologicalQualifierType(libsbml.BQB_IS) cv.addResource( "http://www.geneontology.org/#GO:0005895") self.S.addCVTerm(cv) - self.assert_( self.S.isSetAnnotation() == True ) - self.assert_(( annt_with_cvterm == self.S.getAnnotationString() )) + self.assertTrue( self.S.isSetAnnotation() == True ) + self.assertTrue(( annt_with_cvterm == self.S.getAnnotationString() )) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) - self.assert_( self.S.getAnnotation() == None ) + self.assertTrue( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.getAnnotation() == None ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList pass @@ -1365,11 +1365,11 @@ def test_SBase_unsetAnnotationWithModelHistory(self): " </rdf:RDF>\n" + "</annotation>") self.S.setAnnotation(annt) - self.assert_( self.S.isSetAnnotation() == True ) - self.assert_(( annt == self.S.getAnnotationString() )) + self.assertTrue( self.S.isSetAnnotation() == True ) + self.assertTrue(( annt == self.S.getAnnotationString() )) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) - self.assert_( self.S.getAnnotation() == None ) + self.assertTrue( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.getAnnotation() == None ) self.S.setAnnotation(annt) self.S.setMetaId( "_000001") c.setFamilyName("Keating") @@ -1381,11 +1381,11 @@ def test_SBase_unsetAnnotationWithModelHistory(self): dm = libsbml.Date(2005,12,30,12,15,45,1,2,0) h.setModifiedDate(dm) self.S.setModelHistory(h) - self.assert_( self.S.isSetAnnotation() == True ) - self.assert_(( annt_with_modelhistory == self.S.getAnnotationString() )) + self.assertTrue( self.S.isSetAnnotation() == True ) + self.assertTrue(( annt_with_modelhistory == self.S.getAnnotationString() )) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) - self.assert_( self.S.getAnnotation() == None ) + self.assertTrue( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.getAnnotation() == None ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList _dummyList = [ h ]; _dummyList[:] = []; del _dummyList pass @@ -1408,11 +1408,11 @@ def test_SBase_unsetCVTerms(self): cv4.setBiologicalQualifierType(libsbml.BQB_IS) cv4.addResource( "bar1") self.S.addCVTerm(cv4) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) self.S.unsetCVTerms() - self.assert_( self.S.getNumCVTerms() == 0 ) - #self.assert_( self.S.getCVTerms() == None ) - self.assert_( len(self.S.getCVTerms()) == 0 ) + self.assertTrue( self.S.getNumCVTerms() == 0 ) + #self.assertTrue( self.S.getCVTerms() == None ) + self.assertTrue( len(self.S.getCVTerms()) == 0 ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv1 ]; _dummyList[:] = []; del _dummyList diff --git a/src/bindings/python/test/sbml/TestSBase_newSetters.py b/src/bindings/python/test/sbml/TestSBase_newSetters.py index e4d8326338..4ba2eb946e 100644 --- a/src/bindings/python/test/sbml/TestSBase_newSetters.py +++ b/src/bindings/python/test/sbml/TestSBase_newSetters.py @@ -59,25 +59,25 @@ def test_SBase_addCVTerms(self): cv.setBiologicalQualifierType(libsbml.BQB_ENCODES) cv.addResource( "foo") i = self.S.addCVTerm(cv) - self.assert_( i == libsbml.LIBSBML_MISSING_METAID ) - self.assert_( self.S.getNumCVTerms() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_MISSING_METAID ) + self.assertTrue( self.S.getNumCVTerms() == 0 ) self.S.setMetaId( "_id") i = self.S.addCVTerm(cv) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.getNumCVTerms() == 1 ) - #self.assert_( self.S.getCVTerms() != None ) - self.assert_( len(self.S.getCVTerms()) == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.getNumCVTerms() == 1 ) + #self.assertTrue( self.S.getCVTerms() != None ) + self.assertTrue( len(self.S.getCVTerms()) == 1 ) i = self.S.addCVTerm(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( self.S.getNumCVTerms() == 1 ) - #self.assert_( self.S.getCVTerms() != None ) - self.assert_( len(self.S.getCVTerms()) == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( self.S.getNumCVTerms() == 1 ) + #self.assertTrue( self.S.getCVTerms() != None ) + self.assertTrue( len(self.S.getCVTerms()) == 1 ) cv2 = libsbml.CVTerm(libsbml.MODEL_QUALIFIER) i = self.S.addCVTerm(cv2) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( self.S.getNumCVTerms() == 1 ) - #self.assert_( self.S.getCVTerms() != None ) - self.assert_( len(self.S.getCVTerms()) == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( self.S.getNumCVTerms() == 1 ) + #self.assertTrue( self.S.getCVTerms() != None ) + self.assertTrue( len(self.S.getCVTerms()) == 1 ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv2 ]; _dummyList[:] = []; del _dummyList pass @@ -101,12 +101,12 @@ def test_SBase_appendAnnotation(self): node_top1 = libsbml.XMLNode(token_top1); node_top1.addChild(node1); i = self.S.setAnnotation(node_top) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = self.S.appendAnnotation(node_top1) t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 2 ) - self.assert_(( "This is a test note" == t1.getChild(0).getChild(0).getCharacters() )) - self.assert_(( "This is additional" == t1.getChild(1).getChild(0).getCharacters() )) + self.assertTrue( t1.getNumChildren() == 2 ) + self.assertTrue(( "This is a test note" == t1.getChild(0).getChild(0).getCharacters() )) + self.assertTrue(( "This is additional" == t1.getChild(1).getChild(0).getCharacters() )) pass def test_SBase_appendAnnotationString(self): @@ -120,14 +120,14 @@ def test_SBase_appendAnnotationString(self): node_top = libsbml.XMLNode(token_top); node_top.addChild(node); i = self.S.setAnnotation(node_top) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = self.S.appendAnnotation("<prA:other xmlns:prA=\"http://some\">This is additional</prA:other>"); t1 = self.S.getAnnotation() - self.assert_( t1.getNumChildren() == 2 ) - self.assert_(( "This is a test note" == t1.getChild(0).getChild(0).getCharacters() )) + self.assertTrue( t1.getNumChildren() == 2 ) + self.assertTrue(( "This is a test note" == t1.getChild(0).getChild(0).getCharacters() )) c1 = t1.getChild(1) - self.assert_( c1.getNumChildren() == 1 ) - self.assert_(( "This is additional" == c1.getChild(0).getCharacters() )) + self.assertTrue( c1.getNumChildren() == 1 ) + self.assertTrue(( "This is additional" == c1.getChild(0).getCharacters() )) pass def test_SBase_appendNotes(self): @@ -143,24 +143,24 @@ def test_SBase_appendNotes(self): node = libsbml.XMLNode(token) node.addChild(node4) i = self.S.setNotes(node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) token1 = libsbml.XMLToken(triple,att,ns) node1 = libsbml.XMLNode(token1) node1.addChild(node5) i = self.S.appendNotes(node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) node2 = self.S.getNotes() - self.assert_( node2.getNumChildren() == 2 ) - self.assert_(( "p" == node2.getChild(0).getName() )) - self.assert_( node2.getChild(0).getNumChildren() == 1 ) - self.assert_(( "p" == node2.getChild(1).getName() )) - self.assert_( node2.getChild(1).getNumChildren() == 1 ) + self.assertTrue( node2.getNumChildren() == 2 ) + self.assertTrue(( "p" == node2.getChild(0).getName() )) + self.assertTrue( node2.getChild(0).getNumChildren() == 1 ) + self.assertTrue(( "p" == node2.getChild(1).getName() )) + self.assertTrue( node2.getChild(1).getNumChildren() == 1 ) chars1 = node2.getChild(0).getChild(0).getCharacters() chars2 = node2.getChild(1).getChild(0).getCharacters() - self.assert_(( "This is my text" == chars1 )) - self.assert_(( "This is additional text" == chars2 )) + self.assertTrue(( "This is my text" == chars1 )) + self.assertTrue(( "This is additional text" == chars2 )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node1 ]; _dummyList[:] = []; del _dummyList pass @@ -205,28 +205,28 @@ def test_SBase_appendNotes1(self): html_node1.addChild(body_node1) i = self.S.setNotes(html_node) i = self.S.appendNotes(html_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -286,28 +286,28 @@ def test_SBase_appendNotes2(self): body_node1.addChild(p_node1) i = self.S.setNotes(html_node) i = self.S.appendNotes(body_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -364,28 +364,28 @@ def test_SBase_appendNotes3(self): p_node1.addChild(text_node1) i = self.S.setNotes(html_node) i = self.S.appendNotes(p_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -443,28 +443,28 @@ def test_SBase_appendNotes4(self): html_node1.addChild(body_node1) i = self.S.setNotes(body_node) i = self.S.appendNotes(html_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -519,28 +519,28 @@ def test_SBase_appendNotes5(self): html_node1.addChild(body_node1) i = self.S.setNotes(p_node) i = self.S.appendNotes(html_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -583,25 +583,25 @@ def test_SBase_appendNotes6(self): body_node1.addChild(p_node1) i = self.S.setNotes(body_node) i = self.S.appendNotes(body_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -639,25 +639,25 @@ def test_SBase_appendNotes7(self): body_node1.addChild(p_node1) i = self.S.setNotes(p_node) i = self.S.appendNotes(body_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -695,25 +695,25 @@ def test_SBase_appendNotes8(self): p_node1.addChild(text_node1) i = self.S.setNotes(body_node) i = self.S.appendNotes(p_node1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child1 = child.getChild(0) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is my text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) child1 = child.getChild(1) - self.assert_(( "p" == child1.getName() )) - self.assert_( child1.getNumChildren() == 1 ) + self.assertTrue(( "p" == child1.getName() )) + self.assertTrue( child1.getNumChildren() == 1 ) child1 = child1.getChild(0) - self.assert_(( "This is more text" == child1.getCharacters() )) - self.assert_( child1.getNumChildren() == 0 ) + self.assertTrue(( "This is more text" == child1.getCharacters() )) + self.assertTrue( child1.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -739,18 +739,18 @@ def test_SBase_appendNotesString(self): badnotes = "<notes>This is a test note</notes>"; newnotes = "<p xmlns=\"http://www.w3.org/1999/xhtml\">This is more test notes </p>"; i = self.S.setNotes(notes) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) i = self.S.appendNotes(badnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednotes )) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednotes )) i = self.S.appendNotes(newnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString1(self): @@ -782,9 +782,9 @@ def test_SBase_appendNotesString1(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString2(self): @@ -810,9 +810,9 @@ def test_SBase_appendNotesString2(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString3(self): @@ -838,9 +838,9 @@ def test_SBase_appendNotesString3(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString4(self): @@ -866,9 +866,9 @@ def test_SBase_appendNotesString4(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString5(self): @@ -894,9 +894,9 @@ def test_SBase_appendNotesString5(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString6(self): @@ -911,9 +911,9 @@ def test_SBase_appendNotesString6(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString7(self): @@ -928,9 +928,9 @@ def test_SBase_appendNotesString7(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_appendNotesString8(self): @@ -945,78 +945,78 @@ def test_SBase_appendNotesString8(self): i = self.S.setNotes(notes) i = self.S.appendNotes(addnotes) notes1 = self.S.getNotesString() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) - self.assert_(( notes1 == taggednewnotes )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) + self.assertTrue(( notes1 == taggednewnotes )) pass def test_SBase_setAnnotation(self): token = libsbml.XMLToken("This is a test note") node = libsbml.XMLNode(token) i = self.S.setAnnotation(node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == True ) i = self.S.unsetAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.S.unsetAnnotation() - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( self.S.isSetAnnotation() == False ) i = self.S.setAnnotation(node) i = self.S.setAnnotation(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == False ) pass def test_SBase_setAnnotationString(self): annotation = "This is a test note"; taggedannotation = "<annotation>This is a test note</annotation>"; i = self.S.setAnnotation(annotation) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == True ) i = self.S.setAnnotation( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == False ) i = self.S.setAnnotation(taggedannotation) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == True ) i = self.S.unsetAnnotation() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetAnnotation() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetAnnotation() == False ) pass def test_SBase_setMetaId1(self): c = libsbml.Compartment(1,2) i = c.setMetaId( "cell") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, c.isSetMetaId() ) c = None pass def test_SBase_setMetaId2(self): i = self.S.setMetaId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.S.isSetMetaId() ) i = self.S.unsetMetaId() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.S.isSetMetaId() ) pass def test_SBase_setMetaId3(self): i = self.S.setMetaId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetMetaId() ) - self.assert_(( "cell" == self.S.getMetaId() )) + self.assertTrue(( "cell" == self.S.getMetaId() )) i = self.S.unsetMetaId() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.S.isSetMetaId() ) pass def test_SBase_setMetaId4(self): i = self.S.setMetaId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetMetaId() ) - self.assert_(( "cell" == self.S.getMetaId() )) + self.assertTrue(( "cell" == self.S.getMetaId() )) i = self.S.setMetaId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.S.isSetMetaId() ) pass @@ -1024,7 +1024,7 @@ def test_SBase_setModelHistory(self): sb = libsbml.Species(2,4) mh = libsbml.ModelHistory() i = sb.setModelHistory(mh) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass @@ -1042,14 +1042,14 @@ def test_SBase_setModelHistoryL3(self): mh.setCreatedDate(date) mh.setModifiedDate(date) i = sb.setModelHistory(mh) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( sb.isSetModelHistory() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( sb.isSetModelHistory() == True ) mh = sb.getModelHistory() - self.assert_( mh != None ) + self.assertTrue( mh != None ) sb.unsetModelHistory() mh = sb.getModelHistory() - self.assert_( sb.isSetModelHistory() == False ) - self.assert_( mh == None ) + self.assertTrue( sb.isSetModelHistory() == False ) + self.assertTrue( mh == None ) _dummyList = [ mh ]; _dummyList[:] = []; del _dummyList pass @@ -1066,7 +1066,7 @@ def test_SBase_setModelHistory_Model(self): history.setCreatedDate(date) history.setModifiedDate(date) i = self.S.setModelHistory(history) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass @@ -1074,11 +1074,11 @@ def test_SBase_setNamespaces(self): ns = libsbml.XMLNamespaces() ns.add("url", "name") i = self.S.setNamespaces(ns) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S).getNamespaces().getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S).getNamespaces().getLength() == 1 ) i = self.S.setNamespaces(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S).getNamespaces() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S).getNamespaces() == None ) pass def test_SBase_setNotes(self): @@ -1092,25 +1092,25 @@ def test_SBase_setNotes(self): node = libsbml.XMLNode(token) node.addChild(n1) i = self.S.setNotes(node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) i = self.S.unsetNotes() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) token = libsbml.XMLToken("This is a test note") node = libsbml.XMLNode(token) i = self.S.setNotes(node) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) i = self.S.setNotes(node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) i = self.S.setNotes(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -1141,22 +1141,22 @@ def test_SBase_setNotes1(self): html_node.addChild(head_node) html_node.addChild(body_node) i = self.S.setNotes(html_node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "html" == child.getName() )) - self.assert_( child.getNumChildren() == 2 ) + self.assertTrue(( "html" == child.getName() )) + self.assertTrue( child.getNumChildren() == 2 ) child = child.getChild(1) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 1 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 1 ) child = child.getChild(0) - self.assert_(( "p" == child.getName() )) - self.assert_( child.getNumChildren() == 1 ) + self.assertTrue(( "p" == child.getName() )) + self.assertTrue( child.getNumChildren() == 1 ) child = child.getChild(0) - self.assert_(( "This is my text" == child.getCharacters() )) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child.getCharacters() )) + self.assertTrue( child.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ html_triple ]; _dummyList[:] = []; del _dummyList @@ -1190,19 +1190,19 @@ def test_SBase_setNotes2(self): p_node.addChild(text_node) body_node.addChild(p_node) i = self.S.setNotes(body_node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "body" == child.getName() )) - self.assert_( child.getNumChildren() == 1 ) + self.assertTrue(( "body" == child.getName() )) + self.assertTrue( child.getNumChildren() == 1 ) child = child.getChild(0) - self.assert_(( "p" == child.getName() )) - self.assert_( child.getNumChildren() == 1 ) + self.assertTrue(( "p" == child.getName() )) + self.assertTrue( child.getNumChildren() == 1 ) child = child.getChild(0) - self.assert_(( "This is my text" == child.getCharacters() )) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child.getCharacters() )) + self.assertTrue( child.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ body_triple ]; _dummyList[:] = []; del _dummyList @@ -1226,16 +1226,16 @@ def test_SBase_setNotes3(self): text_node = libsbml.XMLNode(text_token) p_node.addChild(text_node) i = self.S.setNotes(p_node) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) notes = self.S.getNotes() - self.assert_(( "notes" == notes.getName() )) - self.assert_( notes.getNumChildren() == 1 ) + self.assertTrue(( "notes" == notes.getName() )) + self.assertTrue( notes.getNumChildren() == 1 ) child = notes.getChild(0) - self.assert_(( "p" == child.getName() )) - self.assert_( child.getNumChildren() == 1 ) + self.assertTrue(( "p" == child.getName() )) + self.assertTrue( child.getNumChildren() == 1 ) child = child.getChild(0) - self.assert_(( "This is my text" == child.getCharacters() )) - self.assert_( child.getNumChildren() == 0 ) + self.assertTrue(( "This is my text" == child.getCharacters() )) + self.assertTrue( child.getNumChildren() == 0 ) _dummyList = [ att ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ p_triple ]; _dummyList[:] = []; del _dummyList @@ -1250,92 +1250,92 @@ def test_SBase_setNotesString(self): taggednotes = "<notes><p xmlns=\"http://www.w3.org/1999/xhtml\">This is a test note </p></notes>"; badnotes = "<notes>This is a test note</notes>"; i = self.S.setNotes(notes) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) i = self.S.unsetNotes() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) i = self.S.setNotes(taggednotes) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.isSetNotes() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.isSetNotes() == True ) i = self.S.setNotes(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) i = self.S.setNotes(badnotes) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) - self.assert_( (self.S.isSetNotes() == True) == False ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( (self.S.isSetNotes() == True) == False ) pass def test_SBase_setSBOTerm1(self): c = libsbml.Compartment(1,2) i = c.setSBOTerm(2) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, c.isSetSBOTerm() ) c = None pass def test_SBase_setSBOTerm2(self): i = self.S.setSBOTerm(5) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 5 ) - self.assert_( ( "SBO:0000005" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:0000005" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 5 ) + self.assertTrue( ( "SBO:0000005" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:0000005" != self.S.getSBOTermAsURL() ) == False ) i = self.S.unsetSBOTerm() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTermID() == "" ) - self.assert_( self.S.getSBOTermAsURL() == "" ) + self.assertTrue( self.S.getSBOTermID() == "" ) + self.assertTrue( self.S.getSBOTermAsURL() == "" ) i = self.S.setSBOTerm(0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 0 ) - self.assert_( ( "SBO:0000000" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:0000000" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 0 ) + self.assertTrue( ( "SBO:0000000" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:0000000" != self.S.getSBOTermAsURL() ) == False ) i = self.S.setSBOTerm(9999999) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 9999999 ) - self.assert_( ( "SBO:9999999" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:9999999" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 9999999 ) + self.assertTrue( ( "SBO:9999999" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:9999999" != self.S.getSBOTermAsURL() ) == False ) i = self.S.setSBOTerm( "SBO:0000005") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 5 ) - self.assert_( ( "SBO:0000005" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:0000005" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 5 ) + self.assertTrue( ( "SBO:0000005" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:0000005" != self.S.getSBOTermAsURL() ) == False ) i = self.S.unsetSBOTerm() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTermID() == "" ) - self.assert_( self.S.getSBOTermAsURL() == "" ) + self.assertTrue( self.S.getSBOTermID() == "" ) + self.assertTrue( self.S.getSBOTermAsURL() == "" ) i = self.S.setSBOTerm( "SBO:0000000") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 0 ) - self.assert_( ( "SBO:0000000" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:0000000" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 0 ) + self.assertTrue( ( "SBO:0000000" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:0000000" != self.S.getSBOTermAsURL() ) == False ) i = self.S.setSBOTerm( "SBO:9999999") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTerm() == 9999999 ) - self.assert_( ( "SBO:9999999" != self.S.getSBOTermID() ) == False ) - self.assert_( ( "http://identifiers.org/biomodels.sbo/SBO:9999999" != self.S.getSBOTermAsURL() ) == False ) + self.assertTrue( self.S.getSBOTerm() == 9999999 ) + self.assertTrue( ( "SBO:9999999" != self.S.getSBOTermID() ) == False ) + self.assertTrue( ( "http://identifiers.org/biomodels.sbo/SBO:9999999" != self.S.getSBOTermAsURL() ) == False ) i = self.S.setSBOTerm(SBML_INT_MAX) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTermID() == "" ) - self.assert_( self.S.getSBOTermAsURL() == "" ) + self.assertTrue( self.S.getSBOTermID() == "" ) + self.assertTrue( self.S.getSBOTermAsURL() == "" ) i = self.S.setSBOTerm(-1) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTermID() == "" ) - self.assert_( self.S.getSBOTermAsURL() == "" ) + self.assertTrue( self.S.getSBOTermID() == "" ) + self.assertTrue( self.S.getSBOTermAsURL() == "" ) i = self.S.setSBOTerm(10000000) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.S.isSetSBOTerm() ) - self.assert_( self.S.getSBOTermID() == "" ) - self.assert_( self.S.getSBOTermAsURL() == "" ) + self.assertTrue( self.S.getSBOTermID() == "" ) + self.assertTrue( self.S.getSBOTermAsURL() == "" ) pass def test_SBase_unsetCVTerms(self): @@ -1356,12 +1356,12 @@ def test_SBase_unsetCVTerms(self): cv4.setBiologicalQualifierType(libsbml.BQB_IS) cv4.addResource( "bar1") self.S.addCVTerm(cv4) - self.assert_( self.S.getNumCVTerms() == 2 ) + self.assertTrue( self.S.getNumCVTerms() == 2 ) i = self.S.unsetCVTerms() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.S.getNumCVTerms() == 0 ) - #self.assert_( self.S.getCVTerms() == None ) - self.assert_( len(self.S.getCVTerms()) == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.S.getNumCVTerms() == 0 ) + #self.assertTrue( self.S.getCVTerms() == None ) + self.assertTrue( len(self.S.getCVTerms()) == 0 ) _dummyList = [ cv ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ cv1 ]; _dummyList[:] = []; del _dummyList diff --git a/src/bindings/python/test/sbml/TestSpecies.py b/src/bindings/python/test/sbml/TestSpecies.py index 0a61fd5f30..546ee2fccf 100644 --- a/src/bindings/python/test/sbml/TestSpecies.py +++ b/src/bindings/python/test/sbml/TestSpecies.py @@ -50,21 +50,21 @@ def tearDown(self): pass def test_Species_create(self): - self.assert_( self.S.getTypeCode() == libsbml.SBML_SPECIES ) - self.assert_( self.S.getMetaId() == "" ) - self.assert_( self.S.getNotes() == None ) - self.assert_( self.S.getAnnotation() == None ) - self.assert_( self.S.getId() == "" ) - self.assert_( self.S.getName() == "" ) - self.assert_( self.S.getCompartment() == "" ) - self.assert_( self.S.getInitialAmount() == 0.0 ) - self.assert_( self.S.getInitialConcentration() == 0.0 ) - self.assert_( self.S.getSubstanceUnits() == "" ) - self.assert_( self.S.getSpatialSizeUnits() == "" ) - self.assert_( self.S.getHasOnlySubstanceUnits() == False ) - self.assert_( self.S.getBoundaryCondition() == False ) - self.assert_( self.S.getCharge() == 0 ) - self.assert_( self.S.getConstant() == False ) + self.assertTrue( self.S.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( self.S.getMetaId() == "" ) + self.assertTrue( self.S.getNotes() == None ) + self.assertTrue( self.S.getAnnotation() == None ) + self.assertTrue( self.S.getId() == "" ) + self.assertTrue( self.S.getName() == "" ) + self.assertTrue( self.S.getCompartment() == "" ) + self.assertTrue( self.S.getInitialAmount() == 0.0 ) + self.assertTrue( self.S.getInitialConcentration() == 0.0 ) + self.assertTrue( self.S.getSubstanceUnits() == "" ) + self.assertTrue( self.S.getSpatialSizeUnits() == "" ) + self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) + self.assertTrue( self.S.getBoundaryCondition() == False ) + self.assertTrue( self.S.getCharge() == 0 ) + self.assertTrue( self.S.getConstant() == False ) self.assertEqual( False, self.S.isSetId() ) self.assertEqual( False, self.S.isSetName() ) self.assertEqual( False, self.S.isSetCompartment() ) @@ -85,14 +85,14 @@ def test_Species_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Species(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_SPECIES ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_SPECIES ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -103,12 +103,12 @@ def test_Species_free_NULL(self): def test_Species_setCompartment(self): compartment = "cell"; self.S.setCompartment(compartment) - self.assert_(( compartment == self.S.getCompartment() )) + self.assertTrue(( compartment == self.S.getCompartment() )) self.assertEqual( True, self.S.isSetCompartment() ) if (self.S.getCompartment() == compartment): pass self.S.setCompartment(self.S.getCompartment()) - self.assert_(( compartment == self.S.getCompartment() )) + self.assertTrue(( compartment == self.S.getCompartment() )) self.S.setCompartment("") self.assertEqual( False, self.S.isSetCompartment() ) if (self.S.getCompartment() != None): @@ -118,12 +118,12 @@ def test_Species_setCompartment(self): def test_Species_setId(self): id = "Glucose"; self.S.setId(id) - self.assert_(( id == self.S.getId() )) + self.assertTrue(( id == self.S.getId() )) self.assertEqual( True, self.S.isSetId() ) if (self.S.getId() == id): pass self.S.setId(self.S.getId()) - self.assert_(( id == self.S.getId() )) + self.assertTrue(( id == self.S.getId() )) self.S.setId("") self.assertEqual( False, self.S.isSetId() ) if (self.S.getId() != None): @@ -136,7 +136,7 @@ def test_Species_setInitialAmount(self): self.S.setInitialAmount(1.2) self.assertEqual( True, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) - self.assert_( self.S.getInitialAmount() == 1.2 ) + self.assertTrue( self.S.getInitialAmount() == 1.2 ) pass def test_Species_setInitialConcentration(self): @@ -145,18 +145,18 @@ def test_Species_setInitialConcentration(self): self.S.setInitialConcentration(3.4) self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( True, self.S.isSetInitialConcentration() ) - self.assert_( self.S.getInitialConcentration() == 3.4 ) + self.assertTrue( self.S.getInitialConcentration() == 3.4 ) pass def test_Species_setName(self): name = "So_Sweet"; self.S.setName(name) - self.assert_(( name == self.S.getName() )) + self.assertTrue(( name == self.S.getName() )) self.assertEqual( True, self.S.isSetName() ) if (self.S.getName() == name): pass self.S.setName(self.S.getName()) - self.assert_(( name == self.S.getName() )) + self.assertTrue(( name == self.S.getName() )) self.S.setName("") self.assertEqual( False, self.S.isSetName() ) if (self.S.getName() != None): @@ -167,12 +167,12 @@ def test_Species_setSpatialSizeUnits(self): s = libsbml.Species(2,1) units = "volume"; s.setSpatialSizeUnits(units) - self.assert_(( units == s.getSpatialSizeUnits() )) + self.assertTrue(( units == s.getSpatialSizeUnits() )) self.assertEqual( True, s.isSetSpatialSizeUnits() ) if (s.getSpatialSizeUnits() == units): pass s.setSpatialSizeUnits(s.getSpatialSizeUnits()) - self.assert_(( units == s.getSpatialSizeUnits() )) + self.assertTrue(( units == s.getSpatialSizeUnits() )) s.setSpatialSizeUnits("") self.assertEqual( False, s.isSetSpatialSizeUnits() ) if (s.getSpatialSizeUnits() != None): @@ -183,12 +183,12 @@ def test_Species_setSpatialSizeUnits(self): def test_Species_setSubstanceUnits(self): units = "item"; self.S.setSubstanceUnits(units) - self.assert_(( units == self.S.getSubstanceUnits() )) + self.assertTrue(( units == self.S.getSubstanceUnits() )) self.assertEqual( True, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() == units): pass self.S.setSubstanceUnits(self.S.getSubstanceUnits()) - self.assert_(( units == self.S.getSubstanceUnits() )) + self.assertTrue(( units == self.S.getSubstanceUnits() )) self.S.setSubstanceUnits("") self.assertEqual( False, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() != None): @@ -198,12 +198,12 @@ def test_Species_setSubstanceUnits(self): def test_Species_setUnits(self): units = "mole"; self.S.setUnits(units) - self.assert_(( units == self.S.getUnits() )) + self.assertTrue(( units == self.S.getUnits() )) self.assertEqual( True, self.S.isSetUnits() ) if (self.S.getSubstanceUnits() == units): pass self.S.setUnits(self.S.getSubstanceUnits()) - self.assert_(( units == self.S.getUnits() )) + self.assertTrue(( units == self.S.getUnits() )) self.S.setUnits("") self.assertEqual( False, self.S.isSetUnits() ) if (self.S.getSubstanceUnits() != None): diff --git a/src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py b/src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py index 696703408d..60479c8d91 100644 --- a/src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py +++ b/src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py @@ -51,13 +51,13 @@ def tearDown(self): pass def test_SpeciesConcentrationRule_create(self): - self.assert_( self.SCR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) - self.assert_( self.SCR.getL1TypeCode() == libsbml.SBML_SPECIES_CONCENTRATION_RULE ) - self.assert_( self.SCR.getNotes() == None ) - self.assert_( self.SCR.getAnnotation() == None ) - self.assert_( self.SCR.getFormula() == "" ) - self.assert_( self.SCR.getType() == libsbml.RULE_TYPE_SCALAR ) - self.assert_( self.SCR.getVariable() == "" ) + self.assertTrue( self.SCR.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) + self.assertTrue( self.SCR.getL1TypeCode() == libsbml.SBML_SPECIES_CONCENTRATION_RULE ) + self.assertTrue( self.SCR.getNotes() == None ) + self.assertTrue( self.SCR.getAnnotation() == None ) + self.assertTrue( self.SCR.getFormula() == "" ) + self.assertTrue( self.SCR.getType() == libsbml.RULE_TYPE_SCALAR ) + self.assertTrue( self.SCR.getVariable() == "" ) self.assertEqual( False, self.SCR.isSetVariable() ) pass @@ -68,13 +68,13 @@ def test_SpeciesConcentrationRule_free_NULL(self): def test_SpeciesConcentrationRule_setSpecies(self): species = "s2"; self.SCR.setVariable(species) - self.assert_(( species == self.SCR.getVariable() )) + self.assertTrue(( species == self.SCR.getVariable() )) self.assertEqual( True, self.SCR.isSetVariable() ) if (self.SCR.getVariable() == species): pass s = self.SCR.getVariable() self.SCR.setVariable(s) - self.assert_(( species == self.SCR.getVariable() )) + self.assertTrue(( species == self.SCR.getVariable() )) self.SCR.setVariable("") self.assertEqual( False, self.SCR.isSetVariable() ) if (self.SCR.getVariable() != None): diff --git a/src/bindings/python/test/sbml/TestSpeciesReference.py b/src/bindings/python/test/sbml/TestSpeciesReference.py index a69526d1bd..4ca9a56305 100644 --- a/src/bindings/python/test/sbml/TestSpeciesReference.py +++ b/src/bindings/python/test/sbml/TestSpeciesReference.py @@ -50,14 +50,14 @@ def tearDown(self): pass def test_SpeciesReference_create(self): - self.assert_( self.SR.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) - self.assert_( self.SR.getMetaId() == "" ) - self.assert_( self.SR.getNotes() == None ) - self.assert_( self.SR.getAnnotation() == None ) - self.assert_( self.SR.getSpecies() == "" ) - self.assert_( self.SR.getStoichiometry() == 1 ) - self.assert_( self.SR.getStoichiometryMath() == None ) - self.assert_( self.SR.getDenominator() == 1 ) + self.assertTrue( self.SR.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( self.SR.getMetaId() == "" ) + self.assertTrue( self.SR.getNotes() == None ) + self.assertTrue( self.SR.getAnnotation() == None ) + self.assertTrue( self.SR.getSpecies() == "" ) + self.assertTrue( self.SR.getStoichiometry() == 1 ) + self.assertTrue( self.SR.getStoichiometryMath() == None ) + self.assertTrue( self.SR.getDenominator() == 1 ) self.assertEqual( False, self.SR.isSetSpecies() ) self.assertEqual( False, self.SR.isSetStoichiometryMath() ) pass @@ -68,14 +68,14 @@ def test_SpeciesReference_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.SpeciesReference(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -86,12 +86,12 @@ def test_SpeciesReference_free_NULL(self): def test_SpeciesReference_setId(self): species = "X0"; self.SR.setId(species) - self.assert_(( species == self.SR.getId() )) + self.assertTrue(( species == self.SR.getId() )) self.assertEqual( True, self.SR.isSetId() ) if (self.SR.getId() == species): pass self.SR.setId(self.SR.getId()) - self.assert_(( species == self.SR.getId() )) + self.assertTrue(( species == self.SR.getId() )) self.SR.setId("") self.assertEqual( False, self.SR.isSetId() ) if (self.SR.getId() != None): @@ -101,12 +101,12 @@ def test_SpeciesReference_setId(self): def test_SpeciesReference_setSpecies(self): species = "X0"; self.SR.setSpecies(species) - self.assert_(( species == self.SR.getSpecies() )) + self.assertTrue(( species == self.SR.getSpecies() )) self.assertEqual( True, self.SR.isSetSpecies() ) if (self.SR.getSpecies() == species): pass self.SR.setSpecies(self.SR.getSpecies()) - self.assert_(( species == self.SR.getSpecies() )) + self.assertTrue(( species == self.SR.getSpecies() )) self.SR.setSpecies("") self.assertEqual( False, self.SR.isSetSpecies() ) if (self.SR.getSpecies() != None): @@ -119,10 +119,10 @@ def test_SpeciesReference_setStoichiometryMath(self): stoich.setMath(math) self.SR.setStoichiometryMath(stoich) math1 = self.SR.getStoichiometryMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1.getMath()) - self.assert_( formula != None ) - self.assert_(( "k3 / k2" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "k3 / k2" == formula )) self.assertEqual( True, self.SR.isSetStoichiometryMath() ) pass diff --git a/src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py b/src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py index ba5cdd25dc..3dbc980ef0 100644 --- a/src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py +++ b/src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py @@ -51,28 +51,28 @@ def tearDown(self): def test_SpeciesReference_setDenominator1(self): i = self.sr.setDenominator(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.sr.getDenominator() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.sr.getDenominator() == 2 ) pass def test_SpeciesReference_setDenominator2(self): c = libsbml.SpeciesReference(2,2) i = c.setDenominator(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getDenominator() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getDenominator() == 4 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_SpeciesReference_setId1(self): i = self.sr.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetId() ) - self.assert_(( "cell" == self.sr.getId() )) + self.assertTrue(( "cell" == self.sr.getId() )) pass def test_SpeciesReference_setId2(self): i = self.sr.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.sr.isSetId() ) pass @@ -84,59 +84,59 @@ def test_SpeciesReference_setId3(self): def test_SpeciesReference_setId4(self): i = self.sr.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetId() ) - self.assert_(( "cell" == self.sr.getId() )) + self.assertTrue(( "cell" == self.sr.getId() )) i = self.sr.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetId() ) pass def test_SpeciesReference_setName1(self): i = self.sr.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetName() ) i = self.sr.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetName() ) pass def test_SpeciesReference_setName2(self): i = self.sr.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.sr.isSetName() ) i = self.sr.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetName() ) pass def test_SpeciesReference_setName3(self): c = libsbml.SpeciesReference(2,1) i = c.setName( "cell") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, c.isSetName() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_SpeciesReference_setName4(self): i = self.sr.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetName() ) i = self.sr.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetName() ) pass def test_SpeciesReference_setSpecies1(self): i = self.sr.setSpecies( "mm") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetSpecies() ) pass def test_SpeciesReference_setSpecies2(self): c = libsbml.SpeciesReference(2,2) i = c.setSpecies( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetSpecies() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -144,32 +144,32 @@ def test_SpeciesReference_setSpecies2(self): def test_SpeciesReference_setSpecies3(self): c = libsbml.SpeciesReference(2,2) i = c.setSpecies( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mole" == c.getSpecies() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mole" == c.getSpecies() )) self.assertEqual( True, c.isSetSpecies() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_SpeciesReference_setSpecies4(self): i = self.sr.setSpecies( "mm") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetSpecies() ) i = self.sr.setSpecies("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetSpecies() ) pass def test_SpeciesReference_setStoichiometry1(self): i = self.sr.setStoichiometry(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.sr.getStoichiometry() == 2.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.sr.getStoichiometry() == 2.0 ) pass def test_SpeciesReference_setStoichiometry2(self): c = libsbml.SpeciesReference(2,2) i = c.setStoichiometry(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getStoichiometry() == 4.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getStoichiometry() == 4.0 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -184,11 +184,11 @@ def test_SpeciesReference_setStoichiometryMath1(self): math.addChild(b) sm.setMath(math) i = self.sr.setStoichiometryMath(sm) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetStoichiometryMath() ) - self.assert_( self.sr.getStoichiometry() == 1 ) + self.assertTrue( self.sr.getStoichiometry() == 1 ) i = self.sr.unsetStoichiometryMath() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) _dummyList = [ sm ]; _dummyList[:] = []; del _dummyList pass @@ -201,17 +201,17 @@ def test_SpeciesReference_setStoichiometryMath2(self): math.addChild(a) sm.setMath(math) i = self.sr.setStoichiometryMath(sm) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.sr.isSetStoichiometryMath() ) _dummyList = [ sm ]; _dummyList[:] = []; del _dummyList pass def test_SpeciesReference_setStoichiometryMath3(self): i = self.sr.setStoichiometryMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) i = self.sr.unsetStoichiometryMath() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) pass @@ -220,11 +220,11 @@ def test_SpeciesReference_setStoichiometryMath4(self): math = None sm.setMath(math) i = self.sr.setStoichiometryMath(sm) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) - self.assert_( self.sr.getStoichiometry() == 1 ) + self.assertTrue( self.sr.getStoichiometry() == 1 ) i = self.sr.unsetStoichiometryMath() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) _dummyList = [ sm ]; _dummyList[:] = []; del _dummyList pass @@ -241,7 +241,7 @@ def test_SpeciesReference_setStoichiometryMath5(self): math.addChild(b) sm.setMath(math) i = sr1.setStoichiometryMath(sm) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, sr1.isSetStoichiometryMath() ) _dummyList = [ sm ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList @@ -251,7 +251,7 @@ def test_SpeciesReference_setStoichiometryMath6(self): sm = libsbml.StoichiometryMath(2,1) sm.setMath(libsbml.parseFormula("1 + 1")) i = self.sr.setStoichiometryMath(sm) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) self.assertEqual( False, self.sr.isSetStoichiometryMath() ) _dummyList = [ sm ]; _dummyList[:] = []; del _dummyList pass @@ -259,7 +259,7 @@ def test_SpeciesReference_setStoichiometryMath6(self): def test_SpeciesReference_setStoichiometryMath7(self): sr1 = libsbml.SpeciesReference(1,2) i = sr1.unsetStoichiometryMath() - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestSpeciesType.py b/src/bindings/python/test/sbml/TestSpeciesType.py index 0e077efcc7..768a88e05d 100644 --- a/src/bindings/python/test/sbml/TestSpeciesType.py +++ b/src/bindings/python/test/sbml/TestSpeciesType.py @@ -50,12 +50,12 @@ def tearDown(self): pass def test_SpeciesType_create(self): - self.assert_( self.CT.getTypeCode() == libsbml.SBML_SPECIES_TYPE ) - self.assert_( self.CT.getMetaId() == "" ) - self.assert_( self.CT.getNotes() == None ) - self.assert_( self.CT.getAnnotation() == None ) - self.assert_( self.CT.getId() == "" ) - self.assert_( self.CT.getName() == "" ) + self.assertTrue( self.CT.getTypeCode() == libsbml.SBML_SPECIES_TYPE ) + self.assertTrue( self.CT.getMetaId() == "" ) + self.assertTrue( self.CT.getNotes() == None ) + self.assertTrue( self.CT.getAnnotation() == None ) + self.assertTrue( self.CT.getId() == "" ) + self.assertTrue( self.CT.getName() == "" ) self.assertEqual( False, self.CT.isSetId() ) self.assertEqual( False, self.CT.isSetName() ) pass @@ -66,14 +66,14 @@ def test_SpeciesType_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,2) sbmlns.addNamespaces(xmlns) object = libsbml.SpeciesType(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_SPECIES_TYPE ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 2 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_SPECIES_TYPE ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 2 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -84,12 +84,12 @@ def test_SpeciesType_free_NULL(self): def test_SpeciesType_setId(self): id = "mitochondria"; self.CT.setId(id) - self.assert_(( id == self.CT.getId() )) + self.assertTrue(( id == self.CT.getId() )) self.assertEqual( True, self.CT.isSetId() ) if (self.CT.getId() == id): pass self.CT.setId(self.CT.getId()) - self.assert_(( id == self.CT.getId() )) + self.assertTrue(( id == self.CT.getId() )) self.CT.setId("") self.assertEqual( False, self.CT.isSetId() ) if (self.CT.getId() != None): @@ -99,12 +99,12 @@ def test_SpeciesType_setId(self): def test_SpeciesType_setName(self): name = "My_Favorite_Factory"; self.CT.setName(name) - self.assert_(( name == self.CT.getName() )) + self.assertTrue(( name == self.CT.getName() )) self.assertEqual( True, self.CT.isSetName() ) if (self.CT.getName() == name): pass self.CT.setName(self.CT.getName()) - self.assert_(( name == self.CT.getName() )) + self.assertTrue(( name == self.CT.getName() )) self.CT.setName("") self.assertEqual( False, self.CT.isSetName() ) if (self.CT.getName() != None): @@ -113,7 +113,7 @@ def test_SpeciesType_setName(self): def test_SpeciesType_unsetName(self): self.CT.setName( "name") - self.assert_(( "name" == self.CT.getName() )) + self.assertTrue(( "name" == self.CT.getName() )) self.assertEqual( True, self.CT.isSetName() ) self.CT.unsetName() self.assertEqual( False, self.CT.isSetName() ) diff --git a/src/bindings/python/test/sbml/TestSpeciesType_newSetters.py b/src/bindings/python/test/sbml/TestSpeciesType_newSetters.py index d7faf9e542..24086d6251 100644 --- a/src/bindings/python/test/sbml/TestSpeciesType_newSetters.py +++ b/src/bindings/python/test/sbml/TestSpeciesType_newSetters.py @@ -51,51 +51,51 @@ def tearDown(self): def test_SpeciesType_setId2(self): i = self.ST.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.ST.isSetId() ) pass def test_SpeciesType_setId3(self): i = self.ST.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.ST.isSetId() ) - self.assert_(( "cell" == self.ST.getId() )) + self.assertTrue(( "cell" == self.ST.getId() )) pass def test_SpeciesType_setId4(self): i = self.ST.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.ST.isSetId() ) - self.assert_(( "cell" == self.ST.getId() )) + self.assertTrue(( "cell" == self.ST.getId() )) i = self.ST.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.ST.isSetId() ) pass def test_SpeciesType_setName1(self): i = self.ST.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.ST.isSetName() ) i = self.ST.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.ST.isSetName() ) pass def test_SpeciesType_setName2(self): i = self.ST.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.ST.isSetName() ) i = self.ST.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.ST.isSetName() ) pass def test_SpeciesType_setName3(self): i = self.ST.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.ST.isSetName() ) i = self.ST.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.ST.isSetName() ) pass diff --git a/src/bindings/python/test/sbml/TestSpecies_newSetters.py b/src/bindings/python/test/sbml/TestSpecies_newSetters.py index 61bbcde617..57242e3280 100644 --- a/src/bindings/python/test/sbml/TestSpecies_newSetters.py +++ b/src/bindings/python/test/sbml/TestSpecies_newSetters.py @@ -51,27 +51,27 @@ def tearDown(self): def test_Species_setBoundaryCondition1(self): i = self.C.setBoundaryCondition(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getBoundaryCondition() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getBoundaryCondition() == False ) i = self.C.setBoundaryCondition(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getBoundaryCondition() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getBoundaryCondition() == True ) pass def test_Species_setCharge1(self): i = self.C.setCharge(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetCharge() ) - self.assert_( self.C.getCharge() == 2 ) + self.assertTrue( self.C.getCharge() == 2 ) i = self.C.unsetCharge() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetCharge() ) pass def test_Species_setCharge2(self): c = libsbml.Species(2,2) i = c.setCharge(4) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, c.isSetCharge() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -79,64 +79,64 @@ def test_Species_setCharge2(self): def test_Species_setCharge3(self): c = libsbml.Species(2,1) i = c.unsetCharge() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetCharge() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setCompartment1(self): i = self.C.setCompartment( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.C.isSetCompartment() ) i = self.C.setCompartment( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetCompartment() ) pass def test_Species_setCompartment2(self): i = self.C.setCompartment( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetCompartment() ) i = self.C.setCompartment( "") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetCompartment() ) pass def test_Species_setConstant1(self): i = self.C.setConstant(False) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.C.getConstant() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.C.getConstant() == False ) pass def test_Species_setConstant2(self): c = libsbml.Species(2,2) i = c.setConstant(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getConstant() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getConstant() == True ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setHasOnlySubstanceUnits1(self): i = self.C.setHasOnlySubstanceUnits(False) - self.assert_( self.C.getHasOnlySubstanceUnits() == False ) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.C.getHasOnlySubstanceUnits() == False ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) pass def test_Species_setHasOnlySubstanceUnits2(self): c = libsbml.Species(2,2) i = c.setHasOnlySubstanceUnits(False) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getHasOnlySubstanceUnits() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getHasOnlySubstanceUnits() == False ) i = c.setHasOnlySubstanceUnits(True) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getHasOnlySubstanceUnits() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getHasOnlySubstanceUnits() == True ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setId2(self): c = libsbml.Species(2,2) i = c.setId( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetId() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -144,103 +144,103 @@ def test_Species_setId2(self): def test_Species_setId3(self): c = libsbml.Species(2,2) i = c.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetId() ) - self.assert_(( "cell" == c.getId() )) + self.assertTrue(( "cell" == c.getId() )) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setId4(self): c = libsbml.Species(2,2) i = c.setId( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetId() ) - self.assert_(( "cell" == c.getId() )) + self.assertTrue(( "cell" == c.getId() )) i = c.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetId() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setInitialAmount1(self): i = self.C.setInitialAmount(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.C.getInitialAmount() == 2.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.C.getInitialAmount() == 2.0 ) self.assertEqual( True, self.C.isSetInitialAmount() ) i = self.C.unsetInitialAmount() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetInitialAmount() ) pass def test_Species_setInitialAmount2(self): c = libsbml.Species(2,2) i = c.setInitialAmount(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getInitialAmount() == 4.0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getInitialAmount() == 4.0 ) self.assertEqual( True, c.isSetInitialAmount() ) i = c.unsetInitialAmount() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetInitialAmount() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setInitialConcentration1(self): i = self.C.setInitialConcentration(2.0) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.C.isSetInitialConcentration() ) pass def test_Species_setInitialConcentration2(self): c = libsbml.Species(2,2) i = c.setInitialConcentration(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getInitialConcentration() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getInitialConcentration() == 4 ) self.assertEqual( True, c.isSetInitialConcentration() ) i = c.unsetInitialConcentration() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetInitialConcentration() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setName1(self): i = self.C.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetName() ) i = self.C.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_Species_setName2(self): c = libsbml.Species(2,2) i = c.setName( "1cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetName() ) i = c.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetName() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setName3(self): i = self.C.setName( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetName() ) i = self.C.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetName() ) pass def test_Species_setSpatialSizeUnits1(self): i = self.C.setSpatialSizeUnits( "mm") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.C.isSetSpatialSizeUnits() ) pass def test_Species_setSpatialSizeUnits2(self): c = libsbml.Species(2,2) i = c.setSpatialSizeUnits( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetSpatialSizeUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -248,8 +248,8 @@ def test_Species_setSpatialSizeUnits2(self): def test_Species_setSpatialSizeUnits3(self): c = libsbml.Species(2,2) i = c.setSpatialSizeUnits( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mole" == c.getSpatialSizeUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mole" == c.getSpatialSizeUnits() )) self.assertEqual( True, c.isSetSpatialSizeUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -257,27 +257,27 @@ def test_Species_setSpatialSizeUnits3(self): def test_Species_setSpatialSizeUnits4(self): c = libsbml.Species(2,2) i = c.setSpatialSizeUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSpatialSizeUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setSpeciesType1(self): i = self.C.setSpeciesType( "cell") - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) self.assertEqual( False, self.C.isSetSpeciesType() ) i = self.C.unsetSpeciesType() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetSpeciesType() ) pass def test_Species_setSpeciesType2(self): c = libsbml.Species(2,2) i = c.setSpeciesType( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetSpeciesType() ) i = c.unsetSpeciesType() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSpeciesType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -285,11 +285,11 @@ def test_Species_setSpeciesType2(self): def test_Species_setSpeciesType3(self): c = libsbml.Species(2,2) i = c.setSpeciesType( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetSpeciesType() ) - self.assert_(( "cell" == c.getSpeciesType() )) + self.assertTrue(( "cell" == c.getSpeciesType() )) i = c.unsetSpeciesType() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSpeciesType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -297,25 +297,25 @@ def test_Species_setSpeciesType3(self): def test_Species_setSpeciesType4(self): c = libsbml.Species(2,2) i = c.setSpeciesType( "cell") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, c.isSetSpeciesType() ) - self.assert_(( "cell" == c.getSpeciesType() )) + self.assertTrue(( "cell" == c.getSpeciesType() )) i = c.setSpeciesType("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSpeciesType() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setSubstanceUnits1(self): i = self.C.setSubstanceUnits( "mm") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetSubstanceUnits() ) pass def test_Species_setSubstanceUnits2(self): c = libsbml.Species(2,2) i = c.setSubstanceUnits( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, c.isSetSubstanceUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -323,8 +323,8 @@ def test_Species_setSubstanceUnits2(self): def test_Species_setSubstanceUnits3(self): c = libsbml.Species(2,2) i = c.setSubstanceUnits( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mole" == c.getSubstanceUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mole" == c.getSubstanceUnits() )) self.assertEqual( True, c.isSetSubstanceUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass @@ -332,39 +332,39 @@ def test_Species_setSubstanceUnits3(self): def test_Species_setSubstanceUnits4(self): c = libsbml.Species(2,2) i = c.setSubstanceUnits( "mole") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mole" == c.getSubstanceUnits() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mole" == c.getSubstanceUnits() )) self.assertEqual( True, c.isSetSubstanceUnits() ) i = c.setSubstanceUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, c.isSetSubstanceUnits() ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Species_setUnits1(self): i = self.C.setUnits( "1cell") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.C.isSetUnits() ) i = self.C.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass def test_Species_setUnits2(self): i = self.C.setUnits( "litre") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetUnits() ) i = self.C.unsetUnits() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass def test_Species_setUnits3(self): i = self.C.setUnits( "litre") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.C.isSetUnits() ) i = self.C.setUnits("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.C.isSetUnits() ) pass diff --git a/src/bindings/python/test/sbml/TestStoichiometryMath.py b/src/bindings/python/test/sbml/TestStoichiometryMath.py index 555369c865..3e8885bf20 100644 --- a/src/bindings/python/test/sbml/TestStoichiometryMath.py +++ b/src/bindings/python/test/sbml/TestStoichiometryMath.py @@ -50,11 +50,11 @@ def tearDown(self): pass def test_StoichiometryMath_create(self): - self.assert_( self.D.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH ) - self.assert_( self.D.getMetaId() == "" ) - self.assert_( self.D.getNotes() == None ) - self.assert_( self.D.getAnnotation() == None ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( self.D.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH ) + self.assertTrue( self.D.getMetaId() == "" ) + self.assertTrue( self.D.getNotes() == None ) + self.assertTrue( self.D.getAnnotation() == None ) + self.assertTrue( self.D.getMath() == None ) pass def test_StoichiometryMath_createWithNS(self): @@ -63,14 +63,14 @@ def test_StoichiometryMath_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.StoichiometryMath(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_STOICHIOMETRY_MATH ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -82,18 +82,18 @@ def test_StoichiometryMath_setMath(self): math = libsbml.parseFormula("lambda(x, x^3)") self.D.setMath(math) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.D.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) self.D.setMath(self.D.getMath()) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) self.D.setMath(None) self.assertEqual( False, self.D.isSetMath() ) if (self.D.getMath() != None): @@ -103,12 +103,12 @@ def test_StoichiometryMath_setMath(self): def test_StoichiometryMath_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) i = self.D.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() == None ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -116,7 +116,7 @@ def test_StoichiometryMath_setMath1(self): def test_StoichiometryMath_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestSyntaxChecker.py b/src/bindings/python/test/sbml/TestSyntaxChecker.py index 8079da072e..9711964e81 100644 --- a/src/bindings/python/test/sbml/TestSyntaxChecker.py +++ b/src/bindings/python/test/sbml/TestSyntaxChecker.py @@ -38,20 +38,20 @@ class TestSyntaxChecker(unittest.TestCase): def test_SyntaxChecker_validID(self): - self.assert_( libsbml.SyntaxChecker.isValidXMLID("cell") == True ) - self.assert_( libsbml.SyntaxChecker.isValidXMLID("1cell") == False ) - self.assert_( libsbml.SyntaxChecker.isValidXMLID("_cell") == True ) + self.assertTrue( libsbml.SyntaxChecker.isValidXMLID("cell") == True ) + self.assertTrue( libsbml.SyntaxChecker.isValidXMLID("1cell") == False ) + self.assertTrue( libsbml.SyntaxChecker.isValidXMLID("_cell") == True ) pass def test_SyntaxChecker_validId(self): - self.assert_( libsbml.SyntaxChecker.isValidSBMLSId("cell") == True ) - self.assert_( libsbml.SyntaxChecker.isValidSBMLSId("1cell") == False ) - self.assert_( libsbml.SyntaxChecker.isValidSBMLSId("") == False ) + self.assertTrue( libsbml.SyntaxChecker.isValidSBMLSId("cell") == True ) + self.assertTrue( libsbml.SyntaxChecker.isValidSBMLSId("1cell") == False ) + self.assertTrue( libsbml.SyntaxChecker.isValidSBMLSId("") == False ) pass def test_SyntaxChecker_validUnitId(self): - self.assert_( libsbml.SyntaxChecker.isValidUnitSId("cell") == True ) - self.assert_( libsbml.SyntaxChecker.isValidUnitSId("1cell") == False ) + self.assertTrue( libsbml.SyntaxChecker.isValidUnitSId("cell") == True ) + self.assertTrue( libsbml.SyntaxChecker.isValidUnitSId("1cell") == False ) pass def test_SyntaxChecker_validXHTML(self): @@ -70,18 +70,18 @@ def test_SyntaxChecker_validXHTML(self): node = libsbml.XMLNode(token) node.addChild(n1) topnode.addChild(node) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == True ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == True ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") token = libsbml.XMLToken(triple,att,ns) node = libsbml.XMLNode(token) node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == True ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == True ) triple = libsbml.XMLTriple("html", "", "") ns.clear() token = libsbml.XMLToken(triple,att,ns) @@ -89,9 +89,9 @@ def test_SyntaxChecker_validXHTML(self): node.addChild(n1) topnode.removeChild(0) topnode.addChild(node) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == False ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) - self.assert_( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == False ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,None) == False ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS24) == False ) + self.assertTrue( libsbml.SyntaxChecker.hasExpectedXHTMLSyntax(topnode,NS31) == False ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestTrigger.py b/src/bindings/python/test/sbml/TestTrigger.py index 1c9b3f48f2..b9fbea9cbb 100644 --- a/src/bindings/python/test/sbml/TestTrigger.py +++ b/src/bindings/python/test/sbml/TestTrigger.py @@ -50,11 +50,11 @@ def tearDown(self): pass def test_Trigger_create(self): - self.assert_( self.D.getTypeCode() == libsbml.SBML_TRIGGER ) - self.assert_( self.D.getMetaId() == "" ) - self.assert_( self.D.getNotes() == None ) - self.assert_( self.D.getAnnotation() == None ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( self.D.getTypeCode() == libsbml.SBML_TRIGGER ) + self.assertTrue( self.D.getMetaId() == "" ) + self.assertTrue( self.D.getNotes() == None ) + self.assertTrue( self.D.getAnnotation() == None ) + self.assertTrue( self.D.getMath() == None ) pass def test_Trigger_createWithNS(self): @@ -63,14 +63,14 @@ def test_Trigger_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Trigger(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_TRIGGER ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_TRIGGER ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -82,18 +82,18 @@ def test_Trigger_setMath(self): math = libsbml.parseFormula("lambda(x, x^3)") self.D.setMath(math) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) - self.assert_( self.D.getMath() != math ) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) self.D.setMath(self.D.getMath()) math1 = self.D.getMath() - self.assert_( math1 != None ) + self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) - self.assert_( formula != None ) - self.assert_(( "lambda(x, x^3)" == formula )) + self.assertTrue( formula != None ) + self.assertTrue(( "lambda(x, x^3)" == formula )) self.D.setMath(None) self.assertEqual( False, self.D.isSetMath() ) if (self.D.getMath() != None): @@ -103,12 +103,12 @@ def test_Trigger_setMath(self): def test_Trigger_setMath1(self): math = libsbml.parseFormula("2 * k") i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() != math ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() != math ) self.assertEqual( True, self.D.isSetMath() ) i = self.D.setMath(None) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.D.getMath() == None ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.D.getMath() == None ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass @@ -116,7 +116,7 @@ def test_Trigger_setMath1(self): def test_Trigger_setMath2(self): math = libsbml.ASTNode(libsbml.AST_DIVIDE) i = self.D.setMath(math) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, self.D.isSetMath() ) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestUnit.py b/src/bindings/python/test/sbml/TestUnit.py index 4917ed1714..e53a70e579 100644 --- a/src/bindings/python/test/sbml/TestUnit.py +++ b/src/bindings/python/test/sbml/TestUnit.py @@ -50,14 +50,14 @@ def tearDown(self): pass def test_Unit_create(self): - self.assert_( self.U.getTypeCode() == libsbml.SBML_UNIT ) - self.assert_( self.U.getMetaId() == "" ) - self.assert_( self.U.getNotes() == None ) - self.assert_( self.U.getAnnotation() == None ) - self.assert_( self.U.getKind() == libsbml.UNIT_KIND_INVALID ) - self.assert_( self.U.getExponent() == 1 ) - self.assert_( self.U.getScale() == 0 ) - self.assert_( self.U.getMultiplier() == 1.0 ) + self.assertTrue( self.U.getTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( self.U.getMetaId() == "" ) + self.assertTrue( self.U.getNotes() == None ) + self.assertTrue( self.U.getAnnotation() == None ) + self.assertTrue( self.U.getKind() == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( self.U.getExponent() == 1 ) + self.assertTrue( self.U.getScale() == 0 ) + self.assertTrue( self.U.getMultiplier() == 1.0 ) self.assertEqual( False, self.U.isSetKind() ) self.assertEqual( True, self.U.isSetExponent() ) self.assertEqual( True, self.U.isSetScale() ) @@ -70,14 +70,14 @@ def test_Unit_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Unit(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_UNIT ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_UNIT ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass @@ -176,19 +176,19 @@ def test_Unit_isXXX(self): def test_Unit_set_get(self): u = libsbml.Unit(2,4) - self.assert_( u.getKind() == libsbml.UNIT_KIND_INVALID ) - self.assert_( u.getExponent() == 1 ) - self.assert_( u.getScale() == 0 ) - self.assert_( u.getMultiplier() == 1.0 ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( u.getExponent() == 1 ) + self.assertTrue( u.getScale() == 0 ) + self.assertTrue( u.getMultiplier() == 1.0 ) self.assertEqual( False, u.isSetKind() ) u.setKind(libsbml.UNIT_KIND_WATT) - self.assert_( u.getKind() == libsbml.UNIT_KIND_WATT ) + self.assertTrue( u.getKind() == libsbml.UNIT_KIND_WATT ) u.setExponent(3) - self.assert_( u.getExponent() == 3 ) + self.assertTrue( u.getExponent() == 3 ) u.setScale(4) - self.assert_( u.getScale() == 4 ) + self.assertTrue( u.getScale() == 4 ) u.setMultiplier(3.2) - self.assert_( u.getMultiplier() == 3.2 ) + self.assertTrue( u.getMultiplier() == 3.2 ) _dummyList = [ u ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/sbml/TestUnitDefinition.py b/src/bindings/python/test/sbml/TestUnitDefinition.py index dced72f4e9..d3720fc20e 100644 --- a/src/bindings/python/test/sbml/TestUnitDefinition.py +++ b/src/bindings/python/test/sbml/TestUnitDefinition.py @@ -53,20 +53,20 @@ def test_UnitDefinition_addUnit(self): u = libsbml.Unit(2,4) u.setKind(libsbml.UNIT_KIND_MOLE) self.UD.addUnit(u) - self.assert_( self.UD.getNumUnits() == 1 ) + self.assertTrue( self.UD.getNumUnits() == 1 ) _dummyList = [ u ]; _dummyList[:] = []; del _dummyList pass def test_UnitDefinition_create(self): - self.assert_( self.UD.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) - self.assert_( self.UD.getMetaId() == "" ) - self.assert_( self.UD.getNotes() == None ) - self.assert_( self.UD.getAnnotation() == None ) - self.assert_( self.UD.getId() == "" ) - self.assert_( self.UD.getName() == "" ) + self.assertTrue( self.UD.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( self.UD.getMetaId() == "" ) + self.assertTrue( self.UD.getNotes() == None ) + self.assertTrue( self.UD.getAnnotation() == None ) + self.assertTrue( self.UD.getId() == "" ) + self.assertTrue( self.UD.getName() == "" ) self.assertEqual( False, self.UD.isSetId() ) self.assertEqual( False, self.UD.isSetName() ) - self.assert_( self.UD.getNumUnits() == 0 ) + self.assertTrue( self.UD.getNumUnits() == 0 ) pass def test_UnitDefinition_createWithNS(self): @@ -75,28 +75,28 @@ def test_UnitDefinition_createWithNS(self): sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.UnitDefinition(sbmlns) - self.assert_( object.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) - self.assert_( object.getMetaId() == "" ) - self.assert_( object.getNotes() == None ) - self.assert_( object.getAnnotation() == None ) - self.assert_( object.getLevel() == 2 ) - self.assert_( object.getVersion() == 1 ) - self.assert_( object.getNamespaces() != None ) - self.assert_( object.getNamespaces().getLength() == 2 ) + self.assertTrue( object.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( object.getMetaId() == "" ) + self.assertTrue( object.getNotes() == None ) + self.assertTrue( object.getAnnotation() == None ) + self.assertTrue( object.getLevel() == 2 ) + self.assertTrue( object.getVersion() == 1 ) + self.assertTrue( object.getNamespaces() != None ) + self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass def test_UnitDefinition_createWithName(self): ud = libsbml.UnitDefinition(2,4) ud.setName( "mmol_per_liter_per_sec") - self.assert_( ud.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) - self.assert_( ud.getMetaId() == "" ) - self.assert_( ud.getNotes() == None ) - self.assert_( ud.getAnnotation() == None ) - self.assert_( ud.getId() == "" ) - self.assert_(( "mmol_per_liter_per_sec" == ud.getName() )) + self.assertTrue( ud.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) + self.assertTrue( ud.getMetaId() == "" ) + self.assertTrue( ud.getNotes() == None ) + self.assertTrue( ud.getAnnotation() == None ) + self.assertTrue( ud.getId() == "" ) + self.assertTrue(( "mmol_per_liter_per_sec" == ud.getName() )) self.assertEqual( True, ud.isSetName() ) - self.assert_( ud.getNumUnits() == 0 ) + self.assertTrue( ud.getNumUnits() == 0 ) _dummyList = [ ud ]; _dummyList[:] = []; del _dummyList pass @@ -120,16 +120,16 @@ def test_UnitDefinition_getUnit(self): _dummyList = [ mole ]; _dummyList[:] = []; del _dummyList _dummyList = [ litre ]; _dummyList[:] = []; del _dummyList _dummyList = [ second ]; _dummyList[:] = []; del _dummyList - self.assert_( self.UD.getNumUnits() == 3 ) + self.assertTrue( self.UD.getNumUnits() == 3 ) mole = self.UD.getUnit(0) litre = self.UD.getUnit(1) second = self.UD.getUnit(2) - self.assert_( mole.getKind() == libsbml.UNIT_KIND_MOLE ) - self.assert_( litre.getKind() == libsbml.UNIT_KIND_LITRE ) - self.assert_( second.getKind() == libsbml.UNIT_KIND_SECOND ) - self.assert_( mole.getScale() == -3 ) - self.assert_( litre.getExponent() == -1 ) - self.assert_( second.getExponent() == -1 ) + self.assertTrue( mole.getKind() == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( litre.getKind() == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( second.getKind() == libsbml.UNIT_KIND_SECOND ) + self.assertTrue( mole.getScale() == -3 ) + self.assertTrue( litre.getExponent() == -1 ) + self.assertTrue( second.getExponent() == -1 ) pass def test_UnitDefinition_isVariantOfArea(self): @@ -405,9 +405,9 @@ def test_UnitDefinition_printUnits(self): perTime.setKind(libsbml.UnitKind_forName("second")) perTime.setExponent(-1) ud_str = libsbml.UnitDefinition.printUnits(ud,False) - self.assert_(( "second (exponent = -1, multiplier = 1, scale = 0)" == ud_str )) + self.assertTrue(( "second (exponent = -1, multiplier = 1, scale = 0)" == ud_str )) ud_str1 = libsbml.UnitDefinition.printUnits(ud,True) - self.assert_(( "(1 second)^-1" == ud_str1 )) + self.assertTrue(( "(1 second)^-1" == ud_str1 )) ud1 = libsbml.UnitDefinition(2,4) ud1.setId( "mmls") u = ud1.createUnit() @@ -416,21 +416,21 @@ def test_UnitDefinition_printUnits(self): u.setScale(2) u.setMultiplier(3.0) ud_str2 = libsbml.UnitDefinition.printUnits(ud1,False) - self.assert_(( "kilogram (exponent = 1, multiplier = 3, scale = 2)" == ud_str2 )) + self.assertTrue(( "kilogram (exponent = 1, multiplier = 3, scale = 2)" == ud_str2 )) ud_str3 = libsbml.UnitDefinition.printUnits(ud1,True) - self.assert_(( "(300 kilogram)^1" == ud_str3 )) + self.assertTrue(( "(300 kilogram)^1" == ud_str3 )) pass def test_UnitDefinition_removeUnit(self): o1 = self.UD.createUnit() o2 = self.UD.createUnit() o3 = self.UD.createUnit() - self.assert_( self.UD.removeUnit(0) == o1 ) - self.assert_( self.UD.getNumUnits() == 2 ) - self.assert_( self.UD.removeUnit(0) == o2 ) - self.assert_( self.UD.getNumUnits() == 1 ) - self.assert_( self.UD.removeUnit(0) == o3 ) - self.assert_( self.UD.getNumUnits() == 0 ) + self.assertTrue( self.UD.removeUnit(0) == o1 ) + self.assertTrue( self.UD.getNumUnits() == 2 ) + self.assertTrue( self.UD.removeUnit(0) == o2 ) + self.assertTrue( self.UD.getNumUnits() == 1 ) + self.assertTrue( self.UD.removeUnit(0) == o3 ) + self.assertTrue( self.UD.getNumUnits() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList @@ -439,12 +439,12 @@ def test_UnitDefinition_removeUnit(self): def test_UnitDefinition_setId(self): id = "mmls"; self.UD.setId(id) - self.assert_(( id == self.UD.getId() )) + self.assertTrue(( id == self.UD.getId() )) self.assertEqual( True, self.UD.isSetId() ) if (self.UD.getId() == id): pass self.UD.setId(self.UD.getId()) - self.assert_(( id == self.UD.getId() )) + self.assertTrue(( id == self.UD.getId() )) self.UD.setId("") self.assertEqual( False, self.UD.isSetId() ) if (self.UD.getId() != None): @@ -454,12 +454,12 @@ def test_UnitDefinition_setId(self): def test_UnitDefinition_setName(self): name = "mmol_per_liter_per_sec"; self.UD.setName(name) - self.assert_(( name == self.UD.getName() )) + self.assertTrue(( name == self.UD.getName() )) self.assertEqual( True, self.UD.isSetName() ) if (self.UD.getName() == name): pass self.UD.setName(self.UD.getName()) - self.assert_(( name == self.UD.getName() )) + self.assertTrue(( name == self.UD.getName() )) self.UD.setName("") self.assertEqual( False, self.UD.isSetName() ) if (self.UD.getName() != None): diff --git a/src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py b/src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py index 3e8ad1fef6..db5d1cf788 100644 --- a/src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py +++ b/src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py @@ -53,11 +53,11 @@ def test_UnitDefinition_addUnit1(self): m = libsbml.UnitDefinition(2,2) p = libsbml.Unit(2,2) i = m.addUnit(p) - self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setKind(libsbml.UNIT_KIND_MOLE) i = m.addUnit(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( m.getNumUnits() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( m.getNumUnits() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -67,8 +67,8 @@ def test_UnitDefinition_addUnit2(self): p = libsbml.Unit(2,1) p.setKind(libsbml.UNIT_KIND_MOLE) i = m.addUnit(p) - self.assert_( i == libsbml.LIBSBML_VERSION_MISMATCH ) - self.assert_( m.getNumUnits() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH ) + self.assertTrue( m.getNumUnits() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -78,8 +78,8 @@ def test_UnitDefinition_addUnit3(self): p = libsbml.Unit(1,2) p.setKind(libsbml.UNIT_KIND_MOLE) i = m.addUnit(p) - self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) - self.assert_( m.getNumUnits() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH ) + self.assertTrue( m.getNumUnits() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass @@ -88,53 +88,53 @@ def test_UnitDefinition_addUnit4(self): m = libsbml.UnitDefinition(2,2) p = None i = m.addUnit(p) - self.assert_( i == libsbml.LIBSBML_OPERATION_FAILED ) - self.assert_( m.getNumUnits() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED ) + self.assertTrue( m.getNumUnits() == 0 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_UnitDefinition_createUnit(self): m = libsbml.UnitDefinition(2,2) p = m.createUnit() - self.assert_( m.getNumUnits() == 1 ) - self.assert_( (p).getLevel() == 2 ) - self.assert_( (p).getVersion() == 2 ) + self.assertTrue( m.getNumUnits() == 1 ) + self.assertTrue( (p).getLevel() == 2 ) + self.assertTrue( (p).getVersion() == 2 ) _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass def test_UnitDefinition_setId1(self): i = self.UD.setId( "mmls") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mmls" == self.UD.getId() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mmls" == self.UD.getId() )) self.assertEqual( True, self.UD.isSetId() ) i = self.UD.setId("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.UD.isSetId() ) i = self.UD.setId( "123") - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.UD.isSetId() ) pass def test_UnitDefinition_setName1(self): i = self.UD.setName( "mmls") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mmls" == self.UD.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mmls" == self.UD.getName() )) self.assertEqual( True, self.UD.isSetName() ) i = self.UD.setName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.UD.isSetName() ) i = self.UD.setName( "123") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.UD.isSetName() ) pass def test_UnitDefinition_setName2(self): i = self.UD.setName( "mmls") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "mmls" == self.UD.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "mmls" == self.UD.getName() )) self.assertEqual( True, self.UD.isSetName() ) i = self.UD.unsetName() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, self.UD.isSetName() ) pass diff --git a/src/bindings/python/test/sbml/TestUnitKind.py b/src/bindings/python/test/sbml/TestUnitKind.py index d84d17ba70..8dd8438974 100644 --- a/src/bindings/python/test/sbml/TestUnitKind.py +++ b/src/bindings/python/test/sbml/TestUnitKind.py @@ -52,44 +52,44 @@ def test_UnitKind_equals(self): pass def test_UnitKind_forName(self): - self.assert_( libsbml.UnitKind_forName("ampere") == libsbml.UNIT_KIND_AMPERE ) - self.assert_( libsbml.UnitKind_forName("becquerel") == libsbml.UNIT_KIND_BECQUEREL ) - self.assert_( libsbml.UnitKind_forName("candela") == libsbml.UNIT_KIND_CANDELA ) - self.assert_( libsbml.UnitKind_forName("Celsius") == libsbml.UNIT_KIND_CELSIUS ) - self.assert_( libsbml.UnitKind_forName("coulomb") == libsbml.UNIT_KIND_COULOMB ) - self.assert_( libsbml.UnitKind_forName("dimensionless") == libsbml.UNIT_KIND_DIMENSIONLESS ) - self.assert_( libsbml.UnitKind_forName("farad") == libsbml.UNIT_KIND_FARAD ) - self.assert_( libsbml.UnitKind_forName("gram") == libsbml.UNIT_KIND_GRAM ) - self.assert_( libsbml.UnitKind_forName("gray") == libsbml.UNIT_KIND_GRAY ) - self.assert_( libsbml.UnitKind_forName("henry") == libsbml.UNIT_KIND_HENRY ) - self.assert_( libsbml.UnitKind_forName("hertz") == libsbml.UNIT_KIND_HERTZ ) - self.assert_( libsbml.UnitKind_forName("item") == libsbml.UNIT_KIND_ITEM ) - self.assert_( libsbml.UnitKind_forName("joule") == libsbml.UNIT_KIND_JOULE ) - self.assert_( libsbml.UnitKind_forName("katal") == libsbml.UNIT_KIND_KATAL ) - self.assert_( libsbml.UnitKind_forName("kelvin") == libsbml.UNIT_KIND_KELVIN ) - self.assert_( libsbml.UnitKind_forName("kilogram") == libsbml.UNIT_KIND_KILOGRAM ) - self.assert_( libsbml.UnitKind_forName("liter") == libsbml.UNIT_KIND_LITER ) - self.assert_( libsbml.UnitKind_forName("litre") == libsbml.UNIT_KIND_LITRE ) - self.assert_( libsbml.UnitKind_forName("lumen") == libsbml.UNIT_KIND_LUMEN ) - self.assert_( libsbml.UnitKind_forName("lux") == libsbml.UNIT_KIND_LUX ) - self.assert_( libsbml.UnitKind_forName("meter") == libsbml.UNIT_KIND_METER ) - self.assert_( libsbml.UnitKind_forName("metre") == libsbml.UNIT_KIND_METRE ) - self.assert_( libsbml.UnitKind_forName("mole") == libsbml.UNIT_KIND_MOLE ) - self.assert_( libsbml.UnitKind_forName("newton") == libsbml.UNIT_KIND_NEWTON ) - self.assert_( libsbml.UnitKind_forName("ohm") == libsbml.UNIT_KIND_OHM ) - self.assert_( libsbml.UnitKind_forName("pascal") == libsbml.UNIT_KIND_PASCAL ) - self.assert_( libsbml.UnitKind_forName("radian") == libsbml.UNIT_KIND_RADIAN ) - self.assert_( libsbml.UnitKind_forName("second") == libsbml.UNIT_KIND_SECOND ) - self.assert_( libsbml.UnitKind_forName("siemens") == libsbml.UNIT_KIND_SIEMENS ) - self.assert_( libsbml.UnitKind_forName("sievert") == libsbml.UNIT_KIND_SIEVERT ) - self.assert_( libsbml.UnitKind_forName("steradian") == libsbml.UNIT_KIND_STERADIAN ) - self.assert_( libsbml.UnitKind_forName("tesla") == libsbml.UNIT_KIND_TESLA ) - self.assert_( libsbml.UnitKind_forName("volt") == libsbml.UNIT_KIND_VOLT ) - self.assert_( libsbml.UnitKind_forName("watt") == libsbml.UNIT_KIND_WATT ) - self.assert_( libsbml.UnitKind_forName("weber") == libsbml.UNIT_KIND_WEBER ) - self.assert_( libsbml.UnitKind_forName(None) == libsbml.UNIT_KIND_INVALID ) - self.assert_( libsbml.UnitKind_forName("") == libsbml.UNIT_KIND_INVALID ) - self.assert_( libsbml.UnitKind_forName("foobar") == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( libsbml.UnitKind_forName("ampere") == libsbml.UNIT_KIND_AMPERE ) + self.assertTrue( libsbml.UnitKind_forName("becquerel") == libsbml.UNIT_KIND_BECQUEREL ) + self.assertTrue( libsbml.UnitKind_forName("candela") == libsbml.UNIT_KIND_CANDELA ) + self.assertTrue( libsbml.UnitKind_forName("Celsius") == libsbml.UNIT_KIND_CELSIUS ) + self.assertTrue( libsbml.UnitKind_forName("coulomb") == libsbml.UNIT_KIND_COULOMB ) + self.assertTrue( libsbml.UnitKind_forName("dimensionless") == libsbml.UNIT_KIND_DIMENSIONLESS ) + self.assertTrue( libsbml.UnitKind_forName("farad") == libsbml.UNIT_KIND_FARAD ) + self.assertTrue( libsbml.UnitKind_forName("gram") == libsbml.UNIT_KIND_GRAM ) + self.assertTrue( libsbml.UnitKind_forName("gray") == libsbml.UNIT_KIND_GRAY ) + self.assertTrue( libsbml.UnitKind_forName("henry") == libsbml.UNIT_KIND_HENRY ) + self.assertTrue( libsbml.UnitKind_forName("hertz") == libsbml.UNIT_KIND_HERTZ ) + self.assertTrue( libsbml.UnitKind_forName("item") == libsbml.UNIT_KIND_ITEM ) + self.assertTrue( libsbml.UnitKind_forName("joule") == libsbml.UNIT_KIND_JOULE ) + self.assertTrue( libsbml.UnitKind_forName("katal") == libsbml.UNIT_KIND_KATAL ) + self.assertTrue( libsbml.UnitKind_forName("kelvin") == libsbml.UNIT_KIND_KELVIN ) + self.assertTrue( libsbml.UnitKind_forName("kilogram") == libsbml.UNIT_KIND_KILOGRAM ) + self.assertTrue( libsbml.UnitKind_forName("liter") == libsbml.UNIT_KIND_LITER ) + self.assertTrue( libsbml.UnitKind_forName("litre") == libsbml.UNIT_KIND_LITRE ) + self.assertTrue( libsbml.UnitKind_forName("lumen") == libsbml.UNIT_KIND_LUMEN ) + self.assertTrue( libsbml.UnitKind_forName("lux") == libsbml.UNIT_KIND_LUX ) + self.assertTrue( libsbml.UnitKind_forName("meter") == libsbml.UNIT_KIND_METER ) + self.assertTrue( libsbml.UnitKind_forName("metre") == libsbml.UNIT_KIND_METRE ) + self.assertTrue( libsbml.UnitKind_forName("mole") == libsbml.UNIT_KIND_MOLE ) + self.assertTrue( libsbml.UnitKind_forName("newton") == libsbml.UNIT_KIND_NEWTON ) + self.assertTrue( libsbml.UnitKind_forName("ohm") == libsbml.UNIT_KIND_OHM ) + self.assertTrue( libsbml.UnitKind_forName("pascal") == libsbml.UNIT_KIND_PASCAL ) + self.assertTrue( libsbml.UnitKind_forName("radian") == libsbml.UNIT_KIND_RADIAN ) + self.assertTrue( libsbml.UnitKind_forName("second") == libsbml.UNIT_KIND_SECOND ) + self.assertTrue( libsbml.UnitKind_forName("siemens") == libsbml.UNIT_KIND_SIEMENS ) + self.assertTrue( libsbml.UnitKind_forName("sievert") == libsbml.UNIT_KIND_SIEVERT ) + self.assertTrue( libsbml.UnitKind_forName("steradian") == libsbml.UNIT_KIND_STERADIAN ) + self.assertTrue( libsbml.UnitKind_forName("tesla") == libsbml.UNIT_KIND_TESLA ) + self.assertTrue( libsbml.UnitKind_forName("volt") == libsbml.UNIT_KIND_VOLT ) + self.assertTrue( libsbml.UnitKind_forName("watt") == libsbml.UNIT_KIND_WATT ) + self.assertTrue( libsbml.UnitKind_forName("weber") == libsbml.UNIT_KIND_WEBER ) + self.assertTrue( libsbml.UnitKind_forName(None) == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( libsbml.UnitKind_forName("") == libsbml.UNIT_KIND_INVALID ) + self.assertTrue( libsbml.UnitKind_forName("foobar") == libsbml.UNIT_KIND_INVALID ) pass def test_UnitKind_isValidUnitKindString(self): @@ -106,81 +106,81 @@ def test_UnitKind_isValidUnitKindString(self): def test_UnitKind_toString(self): s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_AMPERE) - self.assert_(( "ampere" == s )) + self.assertTrue(( "ampere" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_BECQUEREL) - self.assert_(( "becquerel" == s )) + self.assertTrue(( "becquerel" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_CANDELA) - self.assert_(( "candela" == s )) + self.assertTrue(( "candela" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_CELSIUS) - self.assert_(( "Celsius" == s )) + self.assertTrue(( "Celsius" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_COULOMB) - self.assert_(( "coulomb" == s )) + self.assertTrue(( "coulomb" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_DIMENSIONLESS) - self.assert_(( "dimensionless" == s )) + self.assertTrue(( "dimensionless" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_FARAD) - self.assert_(( "farad" == s )) + self.assertTrue(( "farad" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_GRAM) - self.assert_(( "gram" == s )) + self.assertTrue(( "gram" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_GRAY) - self.assert_(( "gray" == s )) + self.assertTrue(( "gray" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_HENRY) - self.assert_(( "henry" == s )) + self.assertTrue(( "henry" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_HERTZ) - self.assert_(( "hertz" == s )) + self.assertTrue(( "hertz" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_ITEM) - self.assert_(( "item" == s )) + self.assertTrue(( "item" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_JOULE) - self.assert_(( "joule" == s )) + self.assertTrue(( "joule" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_KATAL) - self.assert_(( "katal" == s )) + self.assertTrue(( "katal" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_KELVIN) - self.assert_(( "kelvin" == s )) + self.assertTrue(( "kelvin" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_KILOGRAM) - self.assert_(( "kilogram" == s )) + self.assertTrue(( "kilogram" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_LITER) - self.assert_(( "liter" == s )) + self.assertTrue(( "liter" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_LITRE) - self.assert_(( "litre" == s )) + self.assertTrue(( "litre" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_LUMEN) - self.assert_(( "lumen" == s )) + self.assertTrue(( "lumen" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_LUX) - self.assert_(( "lux" == s )) + self.assertTrue(( "lux" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_METER) - self.assert_(( "meter" == s )) + self.assertTrue(( "meter" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_METRE) - self.assert_(( "metre" == s )) + self.assertTrue(( "metre" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_MOLE) - self.assert_(( "mole" == s )) + self.assertTrue(( "mole" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_NEWTON) - self.assert_(( "newton" == s )) + self.assertTrue(( "newton" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_OHM) - self.assert_(( "ohm" == s )) + self.assertTrue(( "ohm" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_PASCAL) - self.assert_(( "pascal" == s )) + self.assertTrue(( "pascal" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_RADIAN) - self.assert_(( "radian" == s )) + self.assertTrue(( "radian" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_SECOND) - self.assert_(( "second" == s )) + self.assertTrue(( "second" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_SIEMENS) - self.assert_(( "siemens" == s )) + self.assertTrue(( "siemens" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_SIEVERT) - self.assert_(( "sievert" == s )) + self.assertTrue(( "sievert" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_STERADIAN) - self.assert_(( "steradian" == s )) + self.assertTrue(( "steradian" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_TESLA) - self.assert_(( "tesla" == s )) + self.assertTrue(( "tesla" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_VOLT) - self.assert_(( "volt" == s )) + self.assertTrue(( "volt" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_WATT) - self.assert_(( "watt" == s )) + self.assertTrue(( "watt" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_WEBER) - self.assert_(( "weber" == s )) + self.assertTrue(( "weber" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_INVALID) - self.assert_(( "(Invalid UnitKind)" == s )) + self.assertTrue(( "(Invalid UnitKind)" == s )) s = libsbml.UnitKind_toString(-1) - self.assert_(( "(Invalid UnitKind)" == s )) + self.assertTrue(( "(Invalid UnitKind)" == s )) s = libsbml.UnitKind_toString(libsbml.UNIT_KIND_INVALID + 1) - self.assert_(( "(Invalid UnitKind)" == s )) + self.assertTrue(( "(Invalid UnitKind)" == s )) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestUnit_newSetters.py b/src/bindings/python/test/sbml/TestUnit_newSetters.py index c667f47028..4b1c46463b 100644 --- a/src/bindings/python/test/sbml/TestUnit_newSetters.py +++ b/src/bindings/python/test/sbml/TestUnit_newSetters.py @@ -51,75 +51,75 @@ def tearDown(self): def test_Unit_removeScale(self): i = self.U.setScale(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.U.getScale() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.U.getScale() == 2 ) i = libsbml.Unit.removeScale(self.U) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.U.getScale() == 0 ) - self.assert_( self.U.getMultiplier() == 100 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.U.getScale() == 0 ) + self.assertTrue( self.U.getMultiplier() == 100 ) pass def test_Unit_setExponent1(self): i = self.U.setExponent(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.U.getExponent() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.U.getExponent() == 2 ) pass def test_Unit_setExponent2(self): i = self.U.setExponent(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.U.getExponent() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.U.getExponent() == 2 ) pass def test_Unit_setExponent3(self): i = self.U.setExponent(2.2) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) - self.assert_( self.U.getExponent() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( self.U.getExponent() == 1 ) pass def test_Unit_setKind1(self): i = self.U.setKind(libsbml.UnitKind_forName("cell")) - self.assert_( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE ) self.assertEqual( False, self.U.isSetKind() ) pass def test_Unit_setKind2(self): i = self.U.setKind(libsbml.UnitKind_forName("litre")) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, self.U.isSetKind() ) pass def test_Unit_setMultiplier1(self): i = self.U.setMultiplier(2) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.U.getMultiplier() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.U.getMultiplier() == 2 ) pass def test_Unit_setMultiplier2(self): c = libsbml.Unit(2,2) i = c.setMultiplier(4) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( c.getMultiplier() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( c.getMultiplier() == 4 ) _dummyList = [ c ]; _dummyList[:] = []; del _dummyList pass def test_Unit_setOffset1(self): i = self.U.setOffset(2.0) - self.assert_( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) - self.assert_( self.U.getOffset() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE ) + self.assertTrue( self.U.getOffset() == 0 ) pass def test_Unit_setOffset2(self): U1 = libsbml.Unit(2,1) i = U1.setOffset(2.0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( U1.getOffset() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( U1.getOffset() == 2 ) pass def test_Unit_setScale1(self): i = self.U.setScale(2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.U.getScale() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.U.getScale() == 2 ) pass def suite(): diff --git a/src/bindings/python/test/sbml/TestWriteL3SBML.py b/src/bindings/python/test/sbml/TestWriteL3SBML.py index b189135176..234d10b5e2 100644 --- a/src/bindings/python/test/sbml/TestWriteL3SBML.py +++ b/src/bindings/python/test/sbml/TestWriteL3SBML.py @@ -118,27 +118,27 @@ def tearDown(self): def test_SBMLWriter_L3_create(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass def test_SBMLWriter_L3_setProgramName(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) i = w.setProgramName( "sss") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = w.setProgramName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass def test_SBMLWriter_L3_setProgramVersion(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) i = w.setProgramVersion( "sss") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = w.setProgramVersion("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass @@ -529,8 +529,8 @@ def test_WriteL3SBML_error(self): d = libsbml.SBMLDocument() w = libsbml.SBMLWriter() self.assertEqual( False, w.writeSBML(d, "/tmp/impossible/path/should/fail") ) - self.assert_( d.getNumErrors() == 1 ) - self.assert_( d.getError(0).getErrorId() == libsbml.XMLFileUnwritable ) + self.assertTrue( d.getNumErrors() == 1 ) + self.assertTrue( d.getError(0).getErrorId() == libsbml.XMLFileUnwritable ) d = None w = None pass diff --git a/src/bindings/python/test/sbml/TestWriteSBML.py b/src/bindings/python/test/sbml/TestWriteSBML.py index c547112b09..f3858e1726 100644 --- a/src/bindings/python/test/sbml/TestWriteSBML.py +++ b/src/bindings/python/test/sbml/TestWriteSBML.py @@ -185,27 +185,27 @@ def tearDown(self): def test_SBMLWriter_create(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass def test_SBMLWriter_setProgramName(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) i = w.setProgramName( "sss") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = w.setProgramName("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass def test_SBMLWriter_setProgramVersion(self): w = libsbml.SBMLWriter() - self.assert_( w != None ) + self.assertTrue( w != None ) i = w.setProgramVersion( "sss") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = w.setProgramVersion("") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) _dummyList = [ w ]; _dummyList[:] = []; del _dummyList pass @@ -1660,8 +1660,8 @@ def test_WriteSBML_error(self): d = libsbml.SBMLDocument() w = libsbml.SBMLWriter() self.assertEqual( False, w.writeSBML(d, "/tmp/impossible/path/should/fail") ) - self.assert_( d.getNumErrors() == 1 ) - self.assert_( d.getError(0).getErrorId() == libsbml.XMLFileUnwritable ) + self.assertTrue( d.getNumErrors() == 1 ) + self.assertTrue( d.getError(0).getErrorId() == libsbml.XMLFileUnwritable ) d = None w = None pass diff --git a/src/bindings/python/test/xml/TestXMLAttributes.py b/src/bindings/python/test/xml/TestXMLAttributes.py index 8460aaf397..4f8d82c482 100644 --- a/src/bindings/python/test/xml/TestXMLAttributes.py +++ b/src/bindings/python/test/xml/TestXMLAttributes.py @@ -61,40 +61,40 @@ class TestXMLAttributes(unittest.TestCase): def test_XMLAttributes_add_get(self): attrs = libsbml.XMLAttributes() - self.assert_( attrs.getLength() == 0 ) + self.assertTrue( attrs.getLength() == 0 ) self.assertEqual( True, attrs.isEmpty() ) attrs.add("xmlns", "http://foo.org/") - self.assert_( attrs.getLength() == 1 ) - self.assert_( attrs.isEmpty() == False ) + self.assertTrue( attrs.getLength() == 1 ) + self.assertTrue( attrs.isEmpty() == False ) attrs.add("foo", "bar") - self.assert_( attrs.getLength() == 2 ) - self.assert_( attrs.isEmpty() == False ) - self.assert_( attrs.getIndex("xmlns") == 0 ) - self.assert_( attrs.getIndex("foo" ) == 1 ) - self.assert_( attrs.getIndex("bar" ) == -1 ) - self.assert_( attrs.getValue("xmlns") == "http://foo.org/" ) - self.assert_( attrs.getValue("foo" ) == "bar" ) - self.assert_( attrs.getValue("bar" ) == "" ) - self.assert_( attrs.getName(0) == "xmlns" ) - self.assert_( attrs.getName(1) == "foo" ) - self.assert_( attrs.getName(2) == "" ) + self.assertTrue( attrs.getLength() == 2 ) + self.assertTrue( attrs.isEmpty() == False ) + self.assertTrue( attrs.getIndex("xmlns") == 0 ) + self.assertTrue( attrs.getIndex("foo" ) == 1 ) + self.assertTrue( attrs.getIndex("bar" ) == -1 ) + self.assertTrue( attrs.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( attrs.getValue("foo" ) == "bar" ) + self.assertTrue( attrs.getValue("bar" ) == "" ) + self.assertTrue( attrs.getName(0) == "xmlns" ) + self.assertTrue( attrs.getName(1) == "foo" ) + self.assertTrue( attrs.getName(2) == "" ) pass def test_XMLAttributes_assignment(self): att1 = libsbml.XMLAttributes() att1.add("xmlns", "http://foo.org/") - self.assert_( att1.getLength() == 1 ) - self.assert_( att1.isEmpty() == False ) - self.assert_( att1.getIndex("xmlns") == 0 ) - self.assert_( att1.getName(0) == "xmlns" ) - self.assert_( att1.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att1.getLength() == 1 ) + self.assertTrue( att1.isEmpty() == False ) + self.assertTrue( att1.getIndex("xmlns") == 0 ) + self.assertTrue( att1.getName(0) == "xmlns" ) + self.assertTrue( att1.getValue("xmlns") == "http://foo.org/" ) att2 = libsbml.XMLAttributes() att2 = att1 - self.assert_( att2.getLength() == 1 ) - self.assert_( att2.isEmpty() == False ) - self.assert_( att2.getIndex("xmlns") == 0 ) - self.assert_( att2.getName(0) == "xmlns" ) - self.assert_( att2.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att2.getLength() == 1 ) + self.assertTrue( att2.isEmpty() == False ) + self.assertTrue( att2.getIndex("xmlns") == 0 ) + self.assertTrue( att2.getName(0) == "xmlns" ) + self.assertTrue( att2.getValue("xmlns") == "http://foo.org/" ) att2 = None att1 = None pass @@ -102,17 +102,17 @@ def test_XMLAttributes_assignment(self): def test_XMLAttributes_clone(self): att1 = libsbml.XMLAttributes() att1.add("xmlns", "http://foo.org/") - self.assert_( att1.getLength() == 1 ) - self.assert_( att1.isEmpty() == False ) - self.assert_( att1.getIndex("xmlns") == 0 ) - self.assert_( att1.getName(0) == "xmlns" ) - self.assert_( att1.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att1.getLength() == 1 ) + self.assertTrue( att1.isEmpty() == False ) + self.assertTrue( att1.getIndex("xmlns") == 0 ) + self.assertTrue( att1.getName(0) == "xmlns" ) + self.assertTrue( att1.getValue("xmlns") == "http://foo.org/" ) att2 = att1.clone() - self.assert_( att2.getLength() == 1 ) - self.assert_( att2.isEmpty() == False ) - self.assert_( att2.getIndex("xmlns") == 0 ) - self.assert_( att2.getName(0) == "xmlns" ) - self.assert_( att2.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att2.getLength() == 1 ) + self.assertTrue( att2.isEmpty() == False ) + self.assertTrue( att2.getIndex("xmlns") == 0 ) + self.assertTrue( att2.getName(0) == "xmlns" ) + self.assertTrue( att2.getValue("xmlns") == "http://foo.org/" ) att2 = None att1 = None pass @@ -120,17 +120,17 @@ def test_XMLAttributes_clone(self): def test_XMLAttributes_copy(self): att1 = libsbml.XMLAttributes() att1.add("xmlns", "http://foo.org/") - self.assert_( att1.getLength() == 1 ) - self.assert_( att1.isEmpty() == False ) - self.assert_( att1.getIndex("xmlns") == 0 ) - self.assert_( att1.getName(0) == "xmlns" ) - self.assert_( att1.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att1.getLength() == 1 ) + self.assertTrue( att1.isEmpty() == False ) + self.assertTrue( att1.getIndex("xmlns") == 0 ) + self.assertTrue( att1.getName(0) == "xmlns" ) + self.assertTrue( att1.getValue("xmlns") == "http://foo.org/" ) att2 = libsbml.XMLAttributes(att1) - self.assert_( att2.getLength() == 1 ) - self.assert_( att2.isEmpty() == False ) - self.assert_( att2.getIndex("xmlns") == 0 ) - self.assert_( att2.getName(0) == "xmlns" ) - self.assert_( att2.getValue("xmlns") == "http://foo.org/" ) + self.assertTrue( att2.getLength() == 1 ) + self.assertTrue( att2.isEmpty() == False ) + self.assertTrue( att2.getIndex("xmlns") == 0 ) + self.assertTrue( att2.getName(0) == "xmlns" ) + self.assertTrue( att2.getValue("xmlns") == "http://foo.org/" ) att2 = None att1 = None pass diff --git a/src/bindings/python/test/xml/TestXMLAttributesC.py b/src/bindings/python/test/xml/TestXMLAttributesC.py index da28049ad6..d7d7c64df2 100644 --- a/src/bindings/python/test/xml/TestXMLAttributesC.py +++ b/src/bindings/python/test/xml/TestXMLAttributesC.py @@ -41,15 +41,15 @@ def test_XMLAttributes_add1(self): xa = libsbml.XMLAttributes() xt2 = libsbml.XMLTriple("name2", "http://name2.org/", "p2") i = xa.add( "name1", "val1", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = xa.add(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 2 ) - self.assert_( xa.isEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 2 ) + self.assertTrue( xa.isEmpty() == False ) i = xa.add( "noprefix", "val3") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 3 ) - self.assert_( xa.isEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 3 ) + self.assertTrue( xa.isEmpty() == False ) _dummyList = [ xa ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList pass @@ -63,107 +63,107 @@ def test_XMLAttributes_add_remove_qname_C(self): xt2a = libsbml.XMLTriple("name2", "http://name2a.org/", "p2a") xa.add( "name1", "val1", "http://name1.org/", "p1") xa.add(xt2, "val2") - self.assert_( xa.getLength() == 2 ) - self.assert_( xa.isEmpty() == False ) - self.assert_( ( "name1" != xa.getName(0) ) == False ) - self.assert_( ( "val1" != xa.getValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != xa.getURI(0) ) == False ) - self.assert_( ( "p1" != xa.getPrefix(0) ) == False ) - self.assert_( ( "name2" != xa.getName(1) ) == False ) - self.assert_( ( "val2" != xa.getValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != xa.getURI(1) ) == False ) - self.assert_( ( "p2" != xa.getPrefix(1) ) == False ) - self.assert_( ( "val1" != xa.getValue( "name1") ) == False ) - self.assert_( ( "val2" != xa.getValue( "name2") ) == False ) - self.assert_( ( "val1" != xa.getValue( "name1", "http://name1.org/") ) == False ) - self.assert_( ( "val2" != xa.getValue( "name2", "http://name2.org/") ) == False ) - self.assert_( ( "val1" != xa.getValue(xt1) ) == False ) - self.assert_( ( "val2" != xa.getValue(xt2) ) == False ) - self.assert_( xa.hasAttribute(-1) == False ) - self.assert_( xa.hasAttribute(2) == False ) - self.assert_( xa.hasAttribute(0) == True ) - self.assert_( xa.hasAttribute( "name1", "http://name1.org/") == True ) - self.assert_( xa.hasAttribute( "name2", "http://name2.org/") == True ) - self.assert_( xa.hasAttribute( "name3", "http://name3.org/") == False ) - self.assert_( xa.hasAttribute(xt1) == True ) - self.assert_( xa.hasAttribute(xt2) == True ) - self.assert_( xa.hasAttribute(xt3) == False ) + self.assertTrue( xa.getLength() == 2 ) + self.assertTrue( xa.isEmpty() == False ) + self.assertTrue( ( "name1" != xa.getName(0) ) == False ) + self.assertTrue( ( "val1" != xa.getValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != xa.getURI(0) ) == False ) + self.assertTrue( ( "p1" != xa.getPrefix(0) ) == False ) + self.assertTrue( ( "name2" != xa.getName(1) ) == False ) + self.assertTrue( ( "val2" != xa.getValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != xa.getURI(1) ) == False ) + self.assertTrue( ( "p2" != xa.getPrefix(1) ) == False ) + self.assertTrue( ( "val1" != xa.getValue( "name1") ) == False ) + self.assertTrue( ( "val2" != xa.getValue( "name2") ) == False ) + self.assertTrue( ( "val1" != xa.getValue( "name1", "http://name1.org/") ) == False ) + self.assertTrue( ( "val2" != xa.getValue( "name2", "http://name2.org/") ) == False ) + self.assertTrue( ( "val1" != xa.getValue(xt1) ) == False ) + self.assertTrue( ( "val2" != xa.getValue(xt2) ) == False ) + self.assertTrue( xa.hasAttribute(-1) == False ) + self.assertTrue( xa.hasAttribute(2) == False ) + self.assertTrue( xa.hasAttribute(0) == True ) + self.assertTrue( xa.hasAttribute( "name1", "http://name1.org/") == True ) + self.assertTrue( xa.hasAttribute( "name2", "http://name2.org/") == True ) + self.assertTrue( xa.hasAttribute( "name3", "http://name3.org/") == False ) + self.assertTrue( xa.hasAttribute(xt1) == True ) + self.assertTrue( xa.hasAttribute(xt2) == True ) + self.assertTrue( xa.hasAttribute(xt3) == False ) xa.add( "noprefix", "val3") - self.assert_( xa.getLength() == 3 ) - self.assert_( xa.isEmpty() == False ) - self.assert_( ( "noprefix" != xa.getName(2) ) == False ) - self.assert_( ( "val3" != xa.getValue(2) ) == False ) - self.assert_( xa.getURI(2) == "" ) - self.assert_( xa.getPrefix(2) == "" ) - self.assert_( ( "val3" != xa.getValue( "noprefix", "") ) == False ) - self.assert_( xa.hasAttribute( "noprefix" ) == True ) - self.assert_( xa.hasAttribute( "noprefix", "") == True ) + self.assertTrue( xa.getLength() == 3 ) + self.assertTrue( xa.isEmpty() == False ) + self.assertTrue( ( "noprefix" != xa.getName(2) ) == False ) + self.assertTrue( ( "val3" != xa.getValue(2) ) == False ) + self.assertTrue( xa.getURI(2) == "" ) + self.assertTrue( xa.getPrefix(2) == "" ) + self.assertTrue( ( "val3" != xa.getValue( "noprefix", "") ) == False ) + self.assertTrue( xa.hasAttribute( "noprefix" ) == True ) + self.assertTrue( xa.hasAttribute( "noprefix", "") == True ) xa.add(xt1, "mval1") xa.add( "name2", "mval2", "http://name2.org/", "p2") xa.add( "noprefix", "mval3") - self.assert_( xa.getLength() == 3 ) - self.assert_( xa.isEmpty() == False ) - self.assert_( ( "name1" != xa.getName(0) ) == False ) - self.assert_( ( "mval1" != xa.getValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != xa.getURI(0) ) == False ) - self.assert_( ( "p1" != xa.getPrefix(0) ) == False ) - self.assert_( ( "name2" != xa.getName(1) ) == False ) - self.assert_( ( "mval2" != xa.getValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != xa.getURI(1) ) == False ) - self.assert_( ( "p2" != xa.getPrefix(1) ) == False ) - self.assert_( ( "noprefix" != xa.getName(2) ) == False ) - self.assert_( ( "mval3" != xa.getValue(2) ) == False ) - self.assert_( xa.getURI(2) == "" ) - self.assert_( xa.getPrefix(2) == "" ) - self.assert_( xa.hasAttribute(xt1) == True ) - self.assert_( xa.hasAttribute( "name1", "http://name1.org/") == True ) - self.assert_( xa.hasAttribute( "noprefix") == True ) + self.assertTrue( xa.getLength() == 3 ) + self.assertTrue( xa.isEmpty() == False ) + self.assertTrue( ( "name1" != xa.getName(0) ) == False ) + self.assertTrue( ( "mval1" != xa.getValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != xa.getURI(0) ) == False ) + self.assertTrue( ( "p1" != xa.getPrefix(0) ) == False ) + self.assertTrue( ( "name2" != xa.getName(1) ) == False ) + self.assertTrue( ( "mval2" != xa.getValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != xa.getURI(1) ) == False ) + self.assertTrue( ( "p2" != xa.getPrefix(1) ) == False ) + self.assertTrue( ( "noprefix" != xa.getName(2) ) == False ) + self.assertTrue( ( "mval3" != xa.getValue(2) ) == False ) + self.assertTrue( xa.getURI(2) == "" ) + self.assertTrue( xa.getPrefix(2) == "" ) + self.assertTrue( xa.hasAttribute(xt1) == True ) + self.assertTrue( xa.hasAttribute( "name1", "http://name1.org/") == True ) + self.assertTrue( xa.hasAttribute( "noprefix") == True ) xa.add(xt1a, "val1a") xa.add(xt2a, "val2a") - self.assert_( xa.getLength() == 5 ) - self.assert_( ( "name1" != xa.getName(3) ) == False ) - self.assert_( ( "val1a" != xa.getValue(3) ) == False ) - self.assert_( ( "http://name1a.org/" != xa.getURI(3) ) == False ) - self.assert_( ( "p1a" != xa.getPrefix(3) ) == False ) - self.assert_( ( "name2" != xa.getName(4) ) == False ) - self.assert_( ( "val2a" != xa.getValue(4) ) == False ) - self.assert_( ( "http://name2a.org/" != xa.getURI(4) ) == False ) - self.assert_( ( "p2a" != xa.getPrefix(4) ) == False ) - self.assert_( ( "mval1" != xa.getValue( "name1") ) == False ) - self.assert_( ( "mval2" != xa.getValue( "name2") ) == False ) - self.assert_( ( "val1a" != xa.getValue( "name1", "http://name1a.org/") ) == False ) - self.assert_( ( "val2a" != xa.getValue( "name2", "http://name2a.org/") ) == False ) - self.assert_( ( "val1a" != xa.getValue(xt1a) ) == False ) - self.assert_( ( "val2a" != xa.getValue(xt2a) ) == False ) + self.assertTrue( xa.getLength() == 5 ) + self.assertTrue( ( "name1" != xa.getName(3) ) == False ) + self.assertTrue( ( "val1a" != xa.getValue(3) ) == False ) + self.assertTrue( ( "http://name1a.org/" != xa.getURI(3) ) == False ) + self.assertTrue( ( "p1a" != xa.getPrefix(3) ) == False ) + self.assertTrue( ( "name2" != xa.getName(4) ) == False ) + self.assertTrue( ( "val2a" != xa.getValue(4) ) == False ) + self.assertTrue( ( "http://name2a.org/" != xa.getURI(4) ) == False ) + self.assertTrue( ( "p2a" != xa.getPrefix(4) ) == False ) + self.assertTrue( ( "mval1" != xa.getValue( "name1") ) == False ) + self.assertTrue( ( "mval2" != xa.getValue( "name2") ) == False ) + self.assertTrue( ( "val1a" != xa.getValue( "name1", "http://name1a.org/") ) == False ) + self.assertTrue( ( "val2a" != xa.getValue( "name2", "http://name2a.org/") ) == False ) + self.assertTrue( ( "val1a" != xa.getValue(xt1a) ) == False ) + self.assertTrue( ( "val2a" != xa.getValue(xt2a) ) == False ) xa.remove(xt1a) xa.remove(xt2a) - self.assert_( xa.getLength() == 3 ) + self.assertTrue( xa.getLength() == 3 ) xa.remove( "name1", "http://name1.org/") - self.assert_( xa.getLength() == 2 ) - self.assert_( xa.isEmpty() == False ) - self.assert_( ( "name2" != xa.getName(0) ) == False ) - self.assert_( ( "mval2" != xa.getValue(0) ) == False ) - self.assert_( ( "http://name2.org/" != xa.getURI(0) ) == False ) - self.assert_( ( "p2" != xa.getPrefix(0) ) == False ) - self.assert_( ( "noprefix" != xa.getName(1) ) == False ) - self.assert_( ( "mval3" != xa.getValue(1) ) == False ) - self.assert_( xa.getURI(1) == "" ) - self.assert_( xa.getPrefix(1) == "" ) - self.assert_( xa.hasAttribute( "name1", "http://name1.org/") == False ) + self.assertTrue( xa.getLength() == 2 ) + self.assertTrue( xa.isEmpty() == False ) + self.assertTrue( ( "name2" != xa.getName(0) ) == False ) + self.assertTrue( ( "mval2" != xa.getValue(0) ) == False ) + self.assertTrue( ( "http://name2.org/" != xa.getURI(0) ) == False ) + self.assertTrue( ( "p2" != xa.getPrefix(0) ) == False ) + self.assertTrue( ( "noprefix" != xa.getName(1) ) == False ) + self.assertTrue( ( "mval3" != xa.getValue(1) ) == False ) + self.assertTrue( xa.getURI(1) == "" ) + self.assertTrue( xa.getPrefix(1) == "" ) + self.assertTrue( xa.hasAttribute( "name1", "http://name1.org/") == False ) xa.remove(xt2) - self.assert_( xa.getLength() == 1 ) - self.assert_( xa.isEmpty() == False ) - self.assert_( ( "noprefix" != xa.getName(0) ) == False ) - self.assert_( ( "mval3" != xa.getValue(0) ) == False ) - self.assert_( xa.getURI(0) == "" ) - self.assert_( xa.getPrefix(0) == "" ) - self.assert_( xa.hasAttribute(xt2) == False ) - self.assert_( xa.hasAttribute( "name2", "http://name2.org/") == False ) + self.assertTrue( xa.getLength() == 1 ) + self.assertTrue( xa.isEmpty() == False ) + self.assertTrue( ( "noprefix" != xa.getName(0) ) == False ) + self.assertTrue( ( "mval3" != xa.getValue(0) ) == False ) + self.assertTrue( xa.getURI(0) == "" ) + self.assertTrue( xa.getPrefix(0) == "" ) + self.assertTrue( xa.hasAttribute(xt2) == False ) + self.assertTrue( xa.hasAttribute( "name2", "http://name2.org/") == False ) xa.remove( "noprefix", "") - self.assert_( xa.getLength() == 0 ) - self.assert_( xa.isEmpty() == True ) - self.assert_( xa.hasAttribute( "noprefix" ) == False ) - self.assert_( xa.hasAttribute( "noprefix", "") == False ) + self.assertTrue( xa.getLength() == 0 ) + self.assertTrue( xa.isEmpty() == True ) + self.assertTrue( xa.hasAttribute( "noprefix" ) == False ) + self.assertTrue( xa.hasAttribute( "noprefix", "") == False ) _dummyList = [ xa ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList @@ -178,12 +178,12 @@ def test_XMLAttributes_clear1(self): i = xa.add( "name1", "val1", "http://name1.org/", "p1") i = xa.add(xt2, "val2") i = xa.add( "noprefix", "val3") - self.assert_( xa.getLength() == 3 ) - self.assert_( xa.isEmpty() == False ) + self.assertTrue( xa.getLength() == 3 ) + self.assertTrue( xa.isEmpty() == False ) i = xa.clear() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 0 ) - self.assert_( xa.isEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 0 ) + self.assertTrue( xa.isEmpty() == True ) _dummyList = [ xa ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList pass @@ -192,28 +192,28 @@ def test_XMLAttributes_remove1(self): xa = libsbml.XMLAttributes() xt2 = libsbml.XMLTriple("name2", "http://name2.org/", "p2") i = xa.add( "name1", "val1", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = xa.add(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = xa.add( "noprefix", "val3") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) i = xa.add( "name4", "val4", "http://name4.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 4 ) i = xa.remove(4) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = xa.remove(3) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 3 ) i = xa.remove( "noprefix") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 2 ) i = xa.remove(xt2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 1 ) i = xa.remove( "name1", "http://name1.org/") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( xa.getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( xa.getLength() == 0 ) _dummyList = [ xa ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/xml/TestXMLCopyAndClone.py b/src/bindings/python/test/xml/TestXMLCopyAndClone.py index ed3d22c601..916b731e66 100644 --- a/src/bindings/python/test/xml/TestXMLCopyAndClone.py +++ b/src/bindings/python/test/xml/TestXMLCopyAndClone.py @@ -40,16 +40,16 @@ class TestXMLCopyAndClone(unittest.TestCase): def test_NS_assignmentOperator(self): ns = libsbml.XMLNamespaces() ns.add("http://test1.org/", "test1") - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.isEmpty() == False ) - self.assert_( ns.getPrefix(0) == "test1" ) - self.assert_( ns.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.isEmpty() == False ) + self.assertTrue( ns.getPrefix(0) == "test1" ) + self.assertTrue( ns.getURI("test1") == "http://test1.org/" ) ns2 = libsbml.XMLNamespaces() ns2 = ns - self.assert_( ns2.getLength() == 1 ) - self.assert_( ns2.isEmpty() == False ) - self.assert_( ns2.getPrefix(0) == "test1" ) - self.assert_( ns2.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns2.getLength() == 1 ) + self.assertTrue( ns2.isEmpty() == False ) + self.assertTrue( ns2.getPrefix(0) == "test1" ) + self.assertTrue( ns2.getURI("test1") == "http://test1.org/" ) ns2 = None ns = None pass @@ -57,15 +57,15 @@ def test_NS_assignmentOperator(self): def test_NS_clone(self): ns = libsbml.XMLNamespaces() ns.add("http://test1.org/", "test1") - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.isEmpty() == False ) - self.assert_( ns.getPrefix(0) == "test1" ) - self.assert_( ns.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.isEmpty() == False ) + self.assertTrue( ns.getPrefix(0) == "test1" ) + self.assertTrue( ns.getURI("test1") == "http://test1.org/" ) ns2 = ns.clone() - self.assert_( ns2.getLength() == 1 ) - self.assert_( ns2.isEmpty() == False ) - self.assert_( ns2.getPrefix(0) == "test1" ) - self.assert_( ns2.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns2.getLength() == 1 ) + self.assertTrue( ns2.isEmpty() == False ) + self.assertTrue( ns2.getPrefix(0) == "test1" ) + self.assertTrue( ns2.getURI("test1") == "http://test1.org/" ) ns2 = None ns = None pass @@ -73,15 +73,15 @@ def test_NS_clone(self): def test_NS_copyConstructor(self): ns = libsbml.XMLNamespaces() ns.add("http://test1.org/", "test1") - self.assert_( ns.getLength() == 1 ) - self.assert_( ns.isEmpty() == False ) - self.assert_( ns.getPrefix(0) == "test1" ) - self.assert_( ns.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns.getLength() == 1 ) + self.assertTrue( ns.isEmpty() == False ) + self.assertTrue( ns.getPrefix(0) == "test1" ) + self.assertTrue( ns.getURI("test1") == "http://test1.org/" ) ns2 = libsbml.XMLNamespaces(ns) - self.assert_( ns2.getLength() == 1 ) - self.assert_( ns2.isEmpty() == False ) - self.assert_( ns2.getPrefix(0) == "test1" ) - self.assert_( ns2.getURI("test1") == "http://test1.org/" ) + self.assertTrue( ns2.getLength() == 1 ) + self.assertTrue( ns2.isEmpty() == False ) + self.assertTrue( ns2.getPrefix(0) == "test1" ) + self.assertTrue( ns2.getURI("test1") == "http://test1.org/" ) ns2 = None ns = None pass @@ -93,24 +93,24 @@ def test_Node_assignmentOperator(self): node = libsbml.XMLNode(token) child = libsbml.XMLNode() node.addChild(child) - self.assert_( node.getNumChildren() == 1 ) - self.assert_( node.getName() == "sarah" ) - self.assert_( node.getURI() == "http://foo.org/" ) - self.assert_( node.getPrefix() == "bar" ) - self.assert_( node.isEnd() == False ) - self.assert_( node.isEOF() == False ) - self.assert_( node.getLine() == 3 ) - self.assert_( node.getColumn() == 4 ) + self.assertTrue( node.getNumChildren() == 1 ) + self.assertTrue( node.getName() == "sarah" ) + self.assertTrue( node.getURI() == "http://foo.org/" ) + self.assertTrue( node.getPrefix() == "bar" ) + self.assertTrue( node.isEnd() == False ) + self.assertTrue( node.isEOF() == False ) + self.assertTrue( node.getLine() == 3 ) + self.assertTrue( node.getColumn() == 4 ) node2 = libsbml.XMLNode() node2 = node - self.assert_( node2.getNumChildren() == 1 ) - self.assert_( node2.getName() == "sarah" ) - self.assert_( node2.getURI() == "http://foo.org/" ) - self.assert_( node2.getPrefix() == "bar" ) - self.assert_( node2.isEnd() == False ) - self.assert_( node2.isEOF() == False ) - self.assert_( node2.getLine() == 3 ) - self.assert_( node2.getColumn() == 4 ) + self.assertTrue( node2.getNumChildren() == 1 ) + self.assertTrue( node2.getName() == "sarah" ) + self.assertTrue( node2.getURI() == "http://foo.org/" ) + self.assertTrue( node2.getPrefix() == "bar" ) + self.assertTrue( node2.isEnd() == False ) + self.assertTrue( node2.isEOF() == False ) + self.assertTrue( node2.getLine() == 3 ) + self.assertTrue( node2.getColumn() == 4 ) t = None token = None node = None @@ -124,23 +124,23 @@ def test_Node_clone(self): node = libsbml.XMLNode(token) child = libsbml.XMLNode() node.addChild(child) - self.assert_( node.getNumChildren() == 1 ) - self.assert_( node.getName() == "sarah" ) - self.assert_( node.getURI() == "http://foo.org/" ) - self.assert_( node.getPrefix() == "bar" ) - self.assert_( node.isEnd() == False ) - self.assert_( node.isEOF() == False ) - self.assert_( node.getLine() == 3 ) - self.assert_( node.getColumn() == 4 ) + self.assertTrue( node.getNumChildren() == 1 ) + self.assertTrue( node.getName() == "sarah" ) + self.assertTrue( node.getURI() == "http://foo.org/" ) + self.assertTrue( node.getPrefix() == "bar" ) + self.assertTrue( node.isEnd() == False ) + self.assertTrue( node.isEOF() == False ) + self.assertTrue( node.getLine() == 3 ) + self.assertTrue( node.getColumn() == 4 ) node2 = node.clone() - self.assert_( node2.getNumChildren() == 1 ) - self.assert_( node2.getName() == "sarah" ) - self.assert_( node2.getURI() == "http://foo.org/" ) - self.assert_( node2.getPrefix() == "bar" ) - self.assert_( node2.isEnd() == False ) - self.assert_( node2.isEOF() == False ) - self.assert_( node2.getLine() == 3 ) - self.assert_( node2.getColumn() == 4 ) + self.assertTrue( node2.getNumChildren() == 1 ) + self.assertTrue( node2.getName() == "sarah" ) + self.assertTrue( node2.getURI() == "http://foo.org/" ) + self.assertTrue( node2.getPrefix() == "bar" ) + self.assertTrue( node2.isEnd() == False ) + self.assertTrue( node2.isEOF() == False ) + self.assertTrue( node2.getLine() == 3 ) + self.assertTrue( node2.getColumn() == 4 ) t = None token = None node = None @@ -154,23 +154,23 @@ def test_Node_copyConstructor(self): node = libsbml.XMLNode(token) child = libsbml.XMLNode() node.addChild(child) - self.assert_( node.getNumChildren() == 1 ) - self.assert_( node.getName() == "sarah" ) - self.assert_( node.getURI() == "http://foo.org/" ) - self.assert_( node.getPrefix() == "bar" ) - self.assert_( node.isEnd() == False ) - self.assert_( node.isEOF() == False ) - self.assert_( node.getLine() == 3 ) - self.assert_( node.getColumn() == 4 ) + self.assertTrue( node.getNumChildren() == 1 ) + self.assertTrue( node.getName() == "sarah" ) + self.assertTrue( node.getURI() == "http://foo.org/" ) + self.assertTrue( node.getPrefix() == "bar" ) + self.assertTrue( node.isEnd() == False ) + self.assertTrue( node.isEOF() == False ) + self.assertTrue( node.getLine() == 3 ) + self.assertTrue( node.getColumn() == 4 ) node2 = libsbml.XMLNode(node) - self.assert_( node2.getNumChildren() == 1 ) - self.assert_( node2.getName() == "sarah" ) - self.assert_( node2.getURI() == "http://foo.org/" ) - self.assert_( node2.getPrefix() == "bar" ) - self.assert_( node2.isEnd() == False ) - self.assert_( node2.isEOF() == False ) - self.assert_( node2.getLine() == 3 ) - self.assert_( node2.getColumn() == 4 ) + self.assertTrue( node2.getNumChildren() == 1 ) + self.assertTrue( node2.getName() == "sarah" ) + self.assertTrue( node2.getURI() == "http://foo.org/" ) + self.assertTrue( node2.getPrefix() == "bar" ) + self.assertTrue( node2.isEnd() == False ) + self.assertTrue( node2.isEOF() == False ) + self.assertTrue( node2.getLine() == 3 ) + self.assertTrue( node2.getColumn() == 4 ) t = None token = None node = None @@ -180,22 +180,22 @@ def test_Node_copyConstructor(self): def test_Token_assignmentOperator(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") token = libsbml.XMLToken(t,3,4) - self.assert_( token.getName() == "sarah" ) - self.assert_( token.getURI() == "http://foo.org/" ) - self.assert_( token.getPrefix() == "bar" ) - self.assert_( token.isEnd() == True ) - self.assert_( token.isEOF() == False ) - self.assert_( token.getLine() == 3 ) - self.assert_( token.getColumn() == 4 ) + self.assertTrue( token.getName() == "sarah" ) + self.assertTrue( token.getURI() == "http://foo.org/" ) + self.assertTrue( token.getPrefix() == "bar" ) + self.assertTrue( token.isEnd() == True ) + self.assertTrue( token.isEOF() == False ) + self.assertTrue( token.getLine() == 3 ) + self.assertTrue( token.getColumn() == 4 ) token2 = libsbml.XMLToken() token2 = token - self.assert_( token2.getName() == "sarah" ) - self.assert_( token2.getURI() == "http://foo.org/" ) - self.assert_( token2.getPrefix() == "bar" ) - self.assert_( token2.isEnd() == True ) - self.assert_( token2.isEOF() == False ) - self.assert_( token2.getLine() == 3 ) - self.assert_( token2.getColumn() == 4 ) + self.assertTrue( token2.getName() == "sarah" ) + self.assertTrue( token2.getURI() == "http://foo.org/" ) + self.assertTrue( token2.getPrefix() == "bar" ) + self.assertTrue( token2.isEnd() == True ) + self.assertTrue( token2.isEOF() == False ) + self.assertTrue( token2.getLine() == 3 ) + self.assertTrue( token2.getColumn() == 4 ) t = None token = None token2 = None @@ -204,21 +204,21 @@ def test_Token_assignmentOperator(self): def test_Token_clone(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") token = libsbml.XMLToken(t,3,4) - self.assert_( token.getName() == "sarah" ) - self.assert_( token.getURI() == "http://foo.org/" ) - self.assert_( token.getPrefix() == "bar" ) - self.assert_( token.isEnd() == True ) - self.assert_( token.isEOF() == False ) - self.assert_( token.getLine() == 3 ) - self.assert_( token.getColumn() == 4 ) + self.assertTrue( token.getName() == "sarah" ) + self.assertTrue( token.getURI() == "http://foo.org/" ) + self.assertTrue( token.getPrefix() == "bar" ) + self.assertTrue( token.isEnd() == True ) + self.assertTrue( token.isEOF() == False ) + self.assertTrue( token.getLine() == 3 ) + self.assertTrue( token.getColumn() == 4 ) token2 = token.clone() - self.assert_( token2.getName() == "sarah" ) - self.assert_( token2.getURI() == "http://foo.org/" ) - self.assert_( token2.getPrefix() == "bar" ) - self.assert_( token2.isEnd() == True ) - self.assert_( token2.isEOF() == False ) - self.assert_( token2.getLine() == 3 ) - self.assert_( token2.getColumn() == 4 ) + self.assertTrue( token2.getName() == "sarah" ) + self.assertTrue( token2.getURI() == "http://foo.org/" ) + self.assertTrue( token2.getPrefix() == "bar" ) + self.assertTrue( token2.isEnd() == True ) + self.assertTrue( token2.isEOF() == False ) + self.assertTrue( token2.getLine() == 3 ) + self.assertTrue( token2.getColumn() == 4 ) t = None token = None token2 = None @@ -227,21 +227,21 @@ def test_Token_clone(self): def test_Token_copyConstructor(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") token = libsbml.XMLToken(t,3,4) - self.assert_( token.getName() == "sarah" ) - self.assert_( token.getURI() == "http://foo.org/" ) - self.assert_( token.getPrefix() == "bar" ) - self.assert_( token.isEnd() == True ) - self.assert_( token.isEOF() == False ) - self.assert_( token.getLine() == 3 ) - self.assert_( token.getColumn() == 4 ) + self.assertTrue( token.getName() == "sarah" ) + self.assertTrue( token.getURI() == "http://foo.org/" ) + self.assertTrue( token.getPrefix() == "bar" ) + self.assertTrue( token.isEnd() == True ) + self.assertTrue( token.isEOF() == False ) + self.assertTrue( token.getLine() == 3 ) + self.assertTrue( token.getColumn() == 4 ) token2 = libsbml.XMLToken(token) - self.assert_( token2.getName() == "sarah" ) - self.assert_( token2.getURI() == "http://foo.org/" ) - self.assert_( token2.getPrefix() == "bar" ) - self.assert_( token2.isEnd() == True ) - self.assert_( token2.isEOF() == False ) - self.assert_( token2.getLine() == 3 ) - self.assert_( token2.getColumn() == 4 ) + self.assertTrue( token2.getName() == "sarah" ) + self.assertTrue( token2.getURI() == "http://foo.org/" ) + self.assertTrue( token2.getPrefix() == "bar" ) + self.assertTrue( token2.isEnd() == True ) + self.assertTrue( token2.isEOF() == False ) + self.assertTrue( token2.getLine() == 3 ) + self.assertTrue( token2.getColumn() == 4 ) t = None token = None token2 = None @@ -249,40 +249,40 @@ def test_Token_copyConstructor(self): def test_Triple_assignmentOperator(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") - self.assert_( t.getName() == "sarah" ) - self.assert_( t.getURI() == "http://foo.org/" ) - self.assert_( t.getPrefix() == "bar" ) + self.assertTrue( t.getName() == "sarah" ) + self.assertTrue( t.getURI() == "http://foo.org/" ) + self.assertTrue( t.getPrefix() == "bar" ) t2 = libsbml.XMLTriple() t2 = t - self.assert_( t2.getName() == "sarah" ) - self.assert_( t2.getURI() == "http://foo.org/" ) - self.assert_( t2.getPrefix() == "bar" ) + self.assertTrue( t2.getName() == "sarah" ) + self.assertTrue( t2.getURI() == "http://foo.org/" ) + self.assertTrue( t2.getPrefix() == "bar" ) t = None t2 = None pass def test_Triple_clone(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") - self.assert_( t.getName() == "sarah" ) - self.assert_( t.getURI() == "http://foo.org/" ) - self.assert_( t.getPrefix() == "bar" ) + self.assertTrue( t.getName() == "sarah" ) + self.assertTrue( t.getURI() == "http://foo.org/" ) + self.assertTrue( t.getPrefix() == "bar" ) t2 = t.clone() - self.assert_( t2.getName() == "sarah" ) - self.assert_( t2.getURI() == "http://foo.org/" ) - self.assert_( t2.getPrefix() == "bar" ) + self.assertTrue( t2.getName() == "sarah" ) + self.assertTrue( t2.getURI() == "http://foo.org/" ) + self.assertTrue( t2.getPrefix() == "bar" ) t = None t2 = None pass def test_Triple_copyConstructor(self): t = libsbml.XMLTriple("sarah", "http://foo.org/", "bar") - self.assert_( t.getName() == "sarah" ) - self.assert_( t.getURI() == "http://foo.org/" ) - self.assert_( t.getPrefix() == "bar" ) + self.assertTrue( t.getName() == "sarah" ) + self.assertTrue( t.getURI() == "http://foo.org/" ) + self.assertTrue( t.getPrefix() == "bar" ) t2 = libsbml.XMLTriple(t) - self.assert_( t2.getName() == "sarah" ) - self.assert_( t2.getURI() == "http://foo.org/" ) - self.assert_( t2.getPrefix() == "bar" ) + self.assertTrue( t2.getName() == "sarah" ) + self.assertTrue( t2.getURI() == "http://foo.org/" ) + self.assertTrue( t2.getPrefix() == "bar" ) t = None t2 = None pass diff --git a/src/bindings/python/test/xml/TestXMLError.py b/src/bindings/python/test/xml/TestXMLError.py index 462a75f085..7c0cccdc18 100644 --- a/src/bindings/python/test/xml/TestXMLError.py +++ b/src/bindings/python/test/xml/TestXMLError.py @@ -39,42 +39,42 @@ class TestXMLError(unittest.TestCase): def test_XMLError_create(self): error = libsbml.XMLError() - self.assert_( error != None ) + self.assertTrue( error != None ) error = None error = libsbml.XMLError(libsbml.DuplicateXMLAttribute) - self.assert_( error.getErrorId() == libsbml.DuplicateXMLAttribute ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) - self.assert_( error.getSeverityAsString() == "Error" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_XML ) - self.assert_( error.getCategoryAsString() == "XML content" ) -# self.assert_( error.getMessage() == "Duplicate XML attribute.\n" ) - self.assert_( error.getShortMessage() == "Duplicate attribute" ) + self.assertTrue( error.getErrorId() == libsbml.DuplicateXMLAttribute ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) + self.assertTrue( error.getSeverityAsString() == "Error" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_XML ) + self.assertTrue( error.getCategoryAsString() == "XML content" ) +# self.assertTrue( error.getMessage() == "Duplicate XML attribute.\n" ) + self.assertTrue( error.getShortMessage() == "Duplicate attribute" ) error = None error = libsbml.XMLError(12345, "My message") - self.assert_( error.getErrorId() == 12345 ) - self.assert_( error.getMessage() == "My message" ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) - self.assert_( error.getSeverityAsString() == "Fatal" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_INTERNAL ) - self.assert_( error.getCategoryAsString() == "Internal" ) + self.assertTrue( error.getErrorId() == 12345 ) + self.assertTrue( error.getMessage() == "My message" ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) + self.assertTrue( error.getSeverityAsString() == "Fatal" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_INTERNAL ) + self.assertTrue( error.getCategoryAsString() == "Internal" ) error = None error = libsbml.XMLError(12345, "My message",0,0,libsbml.LIBSBML_SEV_INFO,libsbml.LIBSBML_CAT_SYSTEM) - self.assert_( error.getErrorId() == 12345 ) - self.assert_( error.getMessage() == "My message" ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_INFO ) - self.assert_( error.getSeverityAsString() == "Informational" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_SYSTEM ) - self.assert_( error.getCategoryAsString() == "Operating system" ) + self.assertTrue( error.getErrorId() == 12345 ) + self.assertTrue( error.getMessage() == "My message" ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_INFO ) + self.assertTrue( error.getSeverityAsString() == "Informational" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_SYSTEM ) + self.assertTrue( error.getCategoryAsString() == "Operating system" ) self.assertEqual( True, error.isInfo() ) self.assertEqual( True, error.isSystem() ) error = None error = libsbml.XMLError(10000, "Another message",0,0,libsbml.LIBSBML_SEV_FATAL,libsbml.LIBSBML_CAT_XML) - self.assert_( error.getErrorId() == 10000 ) - self.assert_( error.getMessage() == "Another message" ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) - self.assert_( error.getSeverityAsString() == "Fatal" ) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_XML ) - self.assert_( error.getCategoryAsString() == "XML content" ) + self.assertTrue( error.getErrorId() == 10000 ) + self.assertTrue( error.getMessage() == "Another message" ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_FATAL ) + self.assertTrue( error.getSeverityAsString() == "Fatal" ) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_XML ) + self.assertTrue( error.getCategoryAsString() == "XML content" ) self.assertEqual( True, error.isFatal() ) self.assertEqual( True, error.isXML() ) error = None @@ -82,13 +82,13 @@ def test_XMLError_create(self): def test_XMLError_setters(self): error = libsbml.XMLError() - self.assert_( error != None ) + self.assertTrue( error != None ) i = error.setLine(23) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( error.getLine() == 23 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( error.getLine() == 23 ) i = error.setColumn(45) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( error.getColumn() == 45 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( error.getColumn() == 45 ) error = None pass diff --git a/src/bindings/python/test/xml/TestXMLErrorC.py b/src/bindings/python/test/xml/TestXMLErrorC.py index d7e79a7612..c271711c30 100644 --- a/src/bindings/python/test/xml/TestXMLErrorC.py +++ b/src/bindings/python/test/xml/TestXMLErrorC.py @@ -39,25 +39,25 @@ class TestXMLErrorC(unittest.TestCase): def test_XMLError_create_C(self): error = libsbml.XMLError() - self.assert_( error != None ) - self.assert_( error.isInfo() == False ) - self.assert_( error.isWarning() == False ) - self.assert_( error.isError() == False ) - self.assert_( error.isFatal() == True ) + self.assertTrue( error != None ) + self.assertTrue( error.isInfo() == False ) + self.assertTrue( error.isWarning() == False ) + self.assertTrue( error.isError() == False ) + self.assertTrue( error.isFatal() == True ) _dummyList = [ error ]; _dummyList[:] = []; del _dummyList error = libsbml.XMLError(12345, "My message") - self.assert_( ( "My message" != error.getMessage() ) == False ) - self.assert_( error.getErrorId() == 12345 ) + self.assertTrue( ( "My message" != error.getMessage() ) == False ) + self.assertTrue( error.getErrorId() == 12345 ) _dummyList = [ error ]; _dummyList[:] = []; del _dummyList pass def test_XMLError_variablesAsStrings(self): error = libsbml.XMLError(1003, "") - self.assert_( error.getErrorId() == 1003 ) - self.assert_( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) - self.assert_(( "Error" == error.getSeverityAsString() )) - self.assert_( error.getCategory() == libsbml.LIBSBML_CAT_XML ) - self.assert_(( "XML content" == error.getCategoryAsString() )) + self.assertTrue( error.getErrorId() == 1003 ) + self.assertTrue( error.getSeverity() == libsbml.LIBSBML_SEV_ERROR ) + self.assertTrue(( "Error" == error.getSeverityAsString() )) + self.assertTrue( error.getCategory() == libsbml.LIBSBML_CAT_XML ) + self.assertTrue(( "XML content" == error.getCategoryAsString() )) _dummyList = [ error ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/xml/TestXMLNamespaces.py b/src/bindings/python/test/xml/TestXMLNamespaces.py index debc74cabb..689a84ab4d 100644 --- a/src/bindings/python/test/xml/TestXMLNamespaces.py +++ b/src/bindings/python/test/xml/TestXMLNamespaces.py @@ -50,35 +50,35 @@ def tearDown(self): pass def test_XMLNamespaces_add(self): - self.assert_( self.NS.getLength() == 0 ) - self.assert_( self.NS.isEmpty() == True ) + self.assertTrue( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.isEmpty() == True ) self.NS.add( "http://test1.org/", "test1") - self.assert_( self.NS.getLength() == 1 ) - self.assert_( self.NS.isEmpty() == False ) + self.assertTrue( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.isEmpty() == False ) self.NS.add( "http://test2.org/", "test2") - self.assert_( self.NS.getLength() == 2 ) - self.assert_( self.NS.isEmpty() == False ) + self.assertTrue( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.isEmpty() == False ) self.NS.add( "http://test1.org/", "test1a") - self.assert_( self.NS.getLength() == 3 ) - self.assert_( self.NS.isEmpty() == False ) + self.assertTrue( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.isEmpty() == False ) self.NS.add( "http://test1.org/", "test1a") - self.assert_( self.NS.getLength() == 3 ) - self.assert_( self.NS.isEmpty() == False ) - self.assert_( (self.NS.getIndex( "http://test1.org/") == -1) == False ) + self.assertTrue( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.isEmpty() == False ) + self.assertTrue( (self.NS.getIndex( "http://test1.org/") == -1) == False ) pass def test_XMLNamespaces_add1(self): - self.assert_( self.NS.getLength() == 0 ) - self.assert_( self.NS.isEmpty() == True ) + self.assertTrue( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.isEmpty() == True ) i = self.NS.add( "http://test1.org/", "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.NS.getLength() == 1 ) - self.assert_( self.NS.isEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.isEmpty() == False ) pass def test_XMLNamespaces_baseline(self): - self.assert_( self.NS.getLength() == 0 ) - self.assert_( self.NS.isEmpty() == True ) + self.assertTrue( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.isEmpty() == True ) pass def test_XMLNamespaces_clear(self): @@ -87,10 +87,10 @@ def test_XMLNamespaces_clear(self): self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) i = self.NS.clear() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.NS.getLength() == 0 ) pass def test_XMLNamespaces_get(self): @@ -103,34 +103,34 @@ def test_XMLNamespaces_get(self): self.NS.add( "http://test7.org/", "test7") self.NS.add( "http://test8.org/", "test8") self.NS.add( "http://test9.org/", "test9") - self.assert_( self.NS.getLength() == 9 ) - self.assert_( self.NS.getIndex( "http://test1.org/") == 0 ) - self.assert_( ( "test2" != self.NS.getPrefix(1) ) == False ) - self.assert_( ( "test1" != self.NS.getPrefix( "http://test1.org/") ) == False ) - self.assert_( ( "http://test2.org/" != self.NS.getURI(1) ) == False ) - self.assert_( ( "http://test2.org/" != self.NS.getURI( "test2") ) == False ) - self.assert_( self.NS.getIndex( "http://test1.org/") == 0 ) - self.assert_( self.NS.getIndex( "http://test2.org/") == 1 ) - self.assert_( self.NS.getIndex( "http://test5.org/") == 4 ) - self.assert_( self.NS.getIndex( "http://test9.org/") == 8 ) - self.assert_( self.NS.getIndex( "http://testX.org/") == -1 ) - self.assert_( self.NS.hasURI( "http://test1.org/") != False ) - self.assert_( self.NS.hasURI( "http://test2.org/") != False ) - self.assert_( self.NS.hasURI( "http://test5.org/") != False ) - self.assert_( self.NS.hasURI( "http://test9.org/") != False ) - self.assert_( self.NS.hasURI( "http://testX.org/") == False ) - self.assert_( self.NS.getIndexByPrefix( "test1") == 0 ) - self.assert_( self.NS.getIndexByPrefix( "test5") == 4 ) - self.assert_( self.NS.getIndexByPrefix( "test9") == 8 ) - self.assert_( self.NS.getIndexByPrefix( "testX") == -1 ) - self.assert_( self.NS.hasPrefix( "test1") != False ) - self.assert_( self.NS.hasPrefix( "test5") != False ) - self.assert_( self.NS.hasPrefix( "test9") != False ) - self.assert_( self.NS.hasPrefix( "testX") == False ) - self.assert_( self.NS.hasNS( "http://test1.org/", "test1") != False ) - self.assert_( self.NS.hasNS( "http://test5.org/", "test5") != False ) - self.assert_( self.NS.hasNS( "http://test9.org/", "test9") != False ) - self.assert_( self.NS.hasNS( "http://testX.org/", "testX") == False ) + self.assertTrue( self.NS.getLength() == 9 ) + self.assertTrue( self.NS.getIndex( "http://test1.org/") == 0 ) + self.assertTrue( ( "test2" != self.NS.getPrefix(1) ) == False ) + self.assertTrue( ( "test1" != self.NS.getPrefix( "http://test1.org/") ) == False ) + self.assertTrue( ( "http://test2.org/" != self.NS.getURI(1) ) == False ) + self.assertTrue( ( "http://test2.org/" != self.NS.getURI( "test2") ) == False ) + self.assertTrue( self.NS.getIndex( "http://test1.org/") == 0 ) + self.assertTrue( self.NS.getIndex( "http://test2.org/") == 1 ) + self.assertTrue( self.NS.getIndex( "http://test5.org/") == 4 ) + self.assertTrue( self.NS.getIndex( "http://test9.org/") == 8 ) + self.assertTrue( self.NS.getIndex( "http://testX.org/") == -1 ) + self.assertTrue( self.NS.hasURI( "http://test1.org/") != False ) + self.assertTrue( self.NS.hasURI( "http://test2.org/") != False ) + self.assertTrue( self.NS.hasURI( "http://test5.org/") != False ) + self.assertTrue( self.NS.hasURI( "http://test9.org/") != False ) + self.assertTrue( self.NS.hasURI( "http://testX.org/") == False ) + self.assertTrue( self.NS.getIndexByPrefix( "test1") == 0 ) + self.assertTrue( self.NS.getIndexByPrefix( "test5") == 4 ) + self.assertTrue( self.NS.getIndexByPrefix( "test9") == 8 ) + self.assertTrue( self.NS.getIndexByPrefix( "testX") == -1 ) + self.assertTrue( self.NS.hasPrefix( "test1") != False ) + self.assertTrue( self.NS.hasPrefix( "test5") != False ) + self.assertTrue( self.NS.hasPrefix( "test9") != False ) + self.assertTrue( self.NS.hasPrefix( "testX") == False ) + self.assertTrue( self.NS.hasNS( "http://test1.org/", "test1") != False ) + self.assertTrue( self.NS.hasNS( "http://test5.org/", "test5") != False ) + self.assertTrue( self.NS.hasNS( "http://test9.org/", "test9") != False ) + self.assertTrue( self.NS.hasNS( "http://testX.org/", "testX") == False ) pass def test_XMLNamespaces_remove(self): @@ -139,51 +139,51 @@ def test_XMLNamespaces_remove(self): self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) self.NS.remove(4) - self.assert_( self.NS.getLength() == 4 ) + self.assertTrue( self.NS.getLength() == 4 ) self.NS.remove(3) - self.assert_( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.getLength() == 3 ) self.NS.remove(2) - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) self.NS.remove(1) - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.getLength() == 1 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.getLength() == 0 ) self.NS.add( "http://test1.org/", "test1") self.NS.add( "http://test2.org/", "test2") self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 4 ) + self.assertTrue( self.NS.getLength() == 4 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.getLength() == 3 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.getLength() == 1 ) self.NS.remove(0) - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.getLength() == 0 ) pass def test_XMLNamespaces_remove1(self): self.NS.add( "http://test1.org/", "test1") self.NS.add( "http://test2.org/", "test2") - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) i = self.NS.remove(4) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( self.NS.getLength() == 2 ) i = self.NS.remove( "test4") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( self.NS.getLength() == 2 ) i = self.NS.remove(1) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.NS.getLength() == 1 ) i = self.NS.remove( "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( self.NS.getLength() == 0 ) pass def test_XMLNamespaces_remove_by_prefix(self): @@ -192,49 +192,49 @@ def test_XMLNamespaces_remove_by_prefix(self): self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) self.NS.remove( "test1") - self.assert_( self.NS.getLength() == 4 ) + self.assertTrue( self.NS.getLength() == 4 ) self.NS.remove( "test2") - self.assert_( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.getLength() == 3 ) self.NS.remove( "test3") - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) self.NS.remove( "test4") - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.getLength() == 1 ) self.NS.remove( "test5") - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.getLength() == 0 ) self.NS.add( "http://test1.org/", "test1") self.NS.add( "http://test2.org/", "test2") self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) self.NS.remove( "test5") - self.assert_( self.NS.getLength() == 4 ) + self.assertTrue( self.NS.getLength() == 4 ) self.NS.remove( "test4") - self.assert_( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.getLength() == 3 ) self.NS.remove( "test3") - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) self.NS.remove( "test2") - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.getLength() == 1 ) self.NS.remove( "test1") - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.getLength() == 0 ) self.NS.add( "http://test1.org/", "test1") self.NS.add( "http://test2.org/", "test2") self.NS.add( "http://test3.org/", "test3") self.NS.add( "http://test4.org/", "test4") self.NS.add( "http://test5.org/", "test5") - self.assert_( self.NS.getLength() == 5 ) + self.assertTrue( self.NS.getLength() == 5 ) self.NS.remove( "test3") - self.assert_( self.NS.getLength() == 4 ) + self.assertTrue( self.NS.getLength() == 4 ) self.NS.remove( "test1") - self.assert_( self.NS.getLength() == 3 ) + self.assertTrue( self.NS.getLength() == 3 ) self.NS.remove( "test4") - self.assert_( self.NS.getLength() == 2 ) + self.assertTrue( self.NS.getLength() == 2 ) self.NS.remove( "test5") - self.assert_( self.NS.getLength() == 1 ) + self.assertTrue( self.NS.getLength() == 1 ) self.NS.remove( "test2") - self.assert_( self.NS.getLength() == 0 ) + self.assertTrue( self.NS.getLength() == 0 ) pass def suite(): diff --git a/src/bindings/python/test/xml/TestXMLNode.py b/src/bindings/python/test/xml/TestXMLNode.py index c777d549ac..c428bb4a63 100644 --- a/src/bindings/python/test/xml/TestXMLNode.py +++ b/src/bindings/python/test/xml/TestXMLNode.py @@ -52,109 +52,109 @@ def test_XMLNode_attribute_add_remove(self): xt2a = libsbml.XMLTriple("name2", "http://name2a.org/", "p2a") node.addAttr( "name1", "val1", "http://name1.org/", "p1") node.addAttr(xt2, "val2") - self.assert_( node.getAttributesLength() == 2 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "name1" != node.getAttrName(0) ) == False ) - self.assert_( ( "val1" != node.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != node.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != node.getAttrName(1) ) == False ) - self.assert_( ( "val2" != node.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != node.getAttrPrefix(1) ) == False ) - self.assert_( node.getAttrValue( "name1") == "" ) - self.assert_( node.getAttrValue( "name2") == "" ) - self.assert_( ( "val1" != node.getAttrValue( "name1", "http://name1.org/") ) == False ) - self.assert_( ( "val2" != node.getAttrValue( "name2", "http://name2.org/") ) == False ) - self.assert_( ( "val1" != node.getAttrValue(xt1) ) == False ) - self.assert_( ( "val2" != node.getAttrValue(xt2) ) == False ) - self.assert_( node.hasAttr(-1) == False ) - self.assert_( node.hasAttr(2) == False ) - self.assert_( node.hasAttr(0) == True ) - self.assert_( node.hasAttr( "name1", "http://name1.org/") == True ) - self.assert_( node.hasAttr( "name2", "http://name2.org/") == True ) - self.assert_( node.hasAttr( "name3", "http://name3.org/") == False ) - self.assert_( node.hasAttr(xt1) == True ) - self.assert_( node.hasAttr(xt2) == True ) - self.assert_( node.hasAttr(xt3) == False ) + self.assertTrue( node.getAttributesLength() == 2 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != node.getAttrName(0) ) == False ) + self.assertTrue( ( "val1" != node.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != node.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != node.getAttrName(1) ) == False ) + self.assertTrue( ( "val2" != node.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != node.getAttrPrefix(1) ) == False ) + self.assertTrue( node.getAttrValue( "name1") == "" ) + self.assertTrue( node.getAttrValue( "name2") == "" ) + self.assertTrue( ( "val1" != node.getAttrValue( "name1", "http://name1.org/") ) == False ) + self.assertTrue( ( "val2" != node.getAttrValue( "name2", "http://name2.org/") ) == False ) + self.assertTrue( ( "val1" != node.getAttrValue(xt1) ) == False ) + self.assertTrue( ( "val2" != node.getAttrValue(xt2) ) == False ) + self.assertTrue( node.hasAttr(-1) == False ) + self.assertTrue( node.hasAttr(2) == False ) + self.assertTrue( node.hasAttr(0) == True ) + self.assertTrue( node.hasAttr( "name1", "http://name1.org/") == True ) + self.assertTrue( node.hasAttr( "name2", "http://name2.org/") == True ) + self.assertTrue( node.hasAttr( "name3", "http://name3.org/") == False ) + self.assertTrue( node.hasAttr(xt1) == True ) + self.assertTrue( node.hasAttr(xt2) == True ) + self.assertTrue( node.hasAttr(xt3) == False ) node.addAttr( "noprefix", "val3") - self.assert_( node.getAttributesLength() == 3 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != node.getAttrName(2) ) == False ) - self.assert_( ( "val3" != node.getAttrValue(2) ) == False ) - self.assert_( node.getAttrURI(2) == "" ) - self.assert_( node.getAttrPrefix(2) == "" ) - self.assert_( ( "val3" != node.getAttrValue( "noprefix") ) == False ) - self.assert_( ( "val3" != node.getAttrValue( "noprefix", "") ) == False ) - self.assert_( node.hasAttr( "noprefix" ) == True ) - self.assert_( node.hasAttr( "noprefix", "") == True ) + self.assertTrue( node.getAttributesLength() == 3 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != node.getAttrName(2) ) == False ) + self.assertTrue( ( "val3" != node.getAttrValue(2) ) == False ) + self.assertTrue( node.getAttrURI(2) == "" ) + self.assertTrue( node.getAttrPrefix(2) == "" ) + self.assertTrue( ( "val3" != node.getAttrValue( "noprefix") ) == False ) + self.assertTrue( ( "val3" != node.getAttrValue( "noprefix", "") ) == False ) + self.assertTrue( node.hasAttr( "noprefix" ) == True ) + self.assertTrue( node.hasAttr( "noprefix", "") == True ) node.addAttr(xt1, "mval1") node.addAttr( "name2", "mval2", "http://name2.org/", "p2") - self.assert_( node.getAttributesLength() == 3 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "name1" != node.getAttrName(0) ) == False ) - self.assert_( ( "mval1" != node.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != node.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != node.getAttrName(1) ) == False ) - self.assert_( ( "mval2" != node.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != node.getAttrPrefix(1) ) == False ) - self.assert_( node.hasAttr(xt1) == True ) - self.assert_( node.hasAttr( "name1", "http://name1.org/") == True ) + self.assertTrue( node.getAttributesLength() == 3 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != node.getAttrName(0) ) == False ) + self.assertTrue( ( "mval1" != node.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != node.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != node.getAttrName(1) ) == False ) + self.assertTrue( ( "mval2" != node.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != node.getAttrPrefix(1) ) == False ) + self.assertTrue( node.hasAttr(xt1) == True ) + self.assertTrue( node.hasAttr( "name1", "http://name1.org/") == True ) node.addAttr( "noprefix", "mval3") - self.assert_( node.getAttributesLength() == 3 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != node.getAttrName(2) ) == False ) - self.assert_( ( "mval3" != node.getAttrValue(2) ) == False ) - self.assert_( node.getAttrURI(2) == "" ) - self.assert_( node.getAttrPrefix(2) == "" ) - self.assert_( node.hasAttr( "noprefix") == True ) - self.assert_( node.hasAttr( "noprefix", "") == True ) + self.assertTrue( node.getAttributesLength() == 3 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != node.getAttrName(2) ) == False ) + self.assertTrue( ( "mval3" != node.getAttrValue(2) ) == False ) + self.assertTrue( node.getAttrURI(2) == "" ) + self.assertTrue( node.getAttrPrefix(2) == "" ) + self.assertTrue( node.hasAttr( "noprefix") == True ) + self.assertTrue( node.hasAttr( "noprefix", "") == True ) node.addAttr(xt1a, "val1a") node.addAttr(xt2a, "val2a") - self.assert_( node.getAttributesLength() == 5 ) - self.assert_( ( "name1" != node.getAttrName(3) ) == False ) - self.assert_( ( "val1a" != node.getAttrValue(3) ) == False ) - self.assert_( ( "http://name1a.org/" != node.getAttrURI(3) ) == False ) - self.assert_( ( "p1a" != node.getAttrPrefix(3) ) == False ) - self.assert_( ( "name2" != node.getAttrName(4) ) == False ) - self.assert_( ( "val2a" != node.getAttrValue(4) ) == False ) - self.assert_( ( "http://name2a.org/" != node.getAttrURI(4) ) == False ) - self.assert_( ( "p2a" != node.getAttrPrefix(4) ) == False ) - self.assert_( ( "val1a" != node.getAttrValue( "name1", "http://name1a.org/") ) == False ) - self.assert_( ( "val2a" != node.getAttrValue( "name2", "http://name2a.org/") ) == False ) - self.assert_( ( "val1a" != node.getAttrValue(xt1a) ) == False ) - self.assert_( ( "val2a" != node.getAttrValue(xt2a) ) == False ) + self.assertTrue( node.getAttributesLength() == 5 ) + self.assertTrue( ( "name1" != node.getAttrName(3) ) == False ) + self.assertTrue( ( "val1a" != node.getAttrValue(3) ) == False ) + self.assertTrue( ( "http://name1a.org/" != node.getAttrURI(3) ) == False ) + self.assertTrue( ( "p1a" != node.getAttrPrefix(3) ) == False ) + self.assertTrue( ( "name2" != node.getAttrName(4) ) == False ) + self.assertTrue( ( "val2a" != node.getAttrValue(4) ) == False ) + self.assertTrue( ( "http://name2a.org/" != node.getAttrURI(4) ) == False ) + self.assertTrue( ( "p2a" != node.getAttrPrefix(4) ) == False ) + self.assertTrue( ( "val1a" != node.getAttrValue( "name1", "http://name1a.org/") ) == False ) + self.assertTrue( ( "val2a" != node.getAttrValue( "name2", "http://name2a.org/") ) == False ) + self.assertTrue( ( "val1a" != node.getAttrValue(xt1a) ) == False ) + self.assertTrue( ( "val2a" != node.getAttrValue(xt2a) ) == False ) node.removeAttr(xt1a) node.removeAttr(xt2a) - self.assert_( node.getAttributesLength() == 3 ) + self.assertTrue( node.getAttributesLength() == 3 ) node.removeAttr( "name1", "http://name1.org/") - self.assert_( node.getAttributesLength() == 2 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "name2" != node.getAttrName(0) ) == False ) - self.assert_( ( "mval2" != node.getAttrValue(0) ) == False ) - self.assert_( ( "http://name2.org/" != node.getAttrURI(0) ) == False ) - self.assert_( ( "p2" != node.getAttrPrefix(0) ) == False ) - self.assert_( ( "noprefix" != node.getAttrName(1) ) == False ) - self.assert_( ( "mval3" != node.getAttrValue(1) ) == False ) - self.assert_( node.getAttrURI(1) == "" ) - self.assert_( node.getAttrPrefix(1) == "" ) - self.assert_( node.hasAttr( "name1", "http://name1.org/") == False ) + self.assertTrue( node.getAttributesLength() == 2 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "name2" != node.getAttrName(0) ) == False ) + self.assertTrue( ( "mval2" != node.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name2.org/" != node.getAttrURI(0) ) == False ) + self.assertTrue( ( "p2" != node.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "noprefix" != node.getAttrName(1) ) == False ) + self.assertTrue( ( "mval3" != node.getAttrValue(1) ) == False ) + self.assertTrue( node.getAttrURI(1) == "" ) + self.assertTrue( node.getAttrPrefix(1) == "" ) + self.assertTrue( node.hasAttr( "name1", "http://name1.org/") == False ) node.removeAttr(xt2) - self.assert_( node.getAttributesLength() == 1 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != node.getAttrName(0) ) == False ) - self.assert_( ( "mval3" != node.getAttrValue(0) ) == False ) - self.assert_( node.getAttrURI(0) == "" ) - self.assert_( node.getAttrPrefix(0) == "" ) - self.assert_( node.hasAttr(xt2) == False ) - self.assert_( node.hasAttr( "name2", "http://name2.org/") == False ) + self.assertTrue( node.getAttributesLength() == 1 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != node.getAttrName(0) ) == False ) + self.assertTrue( ( "mval3" != node.getAttrValue(0) ) == False ) + self.assertTrue( node.getAttrURI(0) == "" ) + self.assertTrue( node.getAttrPrefix(0) == "" ) + self.assertTrue( node.hasAttr(xt2) == False ) + self.assertTrue( node.hasAttr( "name2", "http://name2.org/") == False ) node.removeAttr( "noprefix") - self.assert_( node.getAttributesLength() == 0 ) - self.assert_( node.isAttributesEmpty() == True ) - self.assert_( node.hasAttr( "noprefix" ) == False ) - self.assert_( node.hasAttr( "noprefix", "") == False ) + self.assertTrue( node.getAttributesLength() == 0 ) + self.assertTrue( node.isAttributesEmpty() == True ) + self.assertTrue( node.hasAttr( "noprefix" ) == False ) + self.assertTrue( node.hasAttr( "noprefix", "") == False ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList @@ -181,36 +181,36 @@ def test_XMLNode_attribute_set_clear(self): nattr.add(xt4, "val4") nattr.add(xt5, "val5") node.setAttributes(nattr) - self.assert_( node.getAttributesLength() == 5 ) - self.assert_( node.isAttributesEmpty() == False ) - self.assert_( ( "name1" != node.getAttrName(0) ) == False ) - self.assert_( ( "val1" != node.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != node.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != node.getAttrName(1) ) == False ) - self.assert_( ( "val2" != node.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != node.getAttrPrefix(1) ) == False ) - self.assert_( ( "name3" != node.getAttrName(2) ) == False ) - self.assert_( ( "val3" != node.getAttrValue(2) ) == False ) - self.assert_( ( "http://name3.org/" != node.getAttrURI(2) ) == False ) - self.assert_( ( "p3" != node.getAttrPrefix(2) ) == False ) - self.assert_( ( "name4" != node.getAttrName(3) ) == False ) - self.assert_( ( "val4" != node.getAttrValue(3) ) == False ) - self.assert_( ( "http://name4.org/" != node.getAttrURI(3) ) == False ) - self.assert_( ( "p4" != node.getAttrPrefix(3) ) == False ) - self.assert_( ( "name5" != node.getAttrName(4) ) == False ) - self.assert_( ( "val5" != node.getAttrValue(4) ) == False ) - self.assert_( ( "http://name5.org/" != node.getAttrURI(4) ) == False ) - self.assert_( ( "p5" != node.getAttrPrefix(4) ) == False ) + self.assertTrue( node.getAttributesLength() == 5 ) + self.assertTrue( node.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != node.getAttrName(0) ) == False ) + self.assertTrue( ( "val1" != node.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != node.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != node.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != node.getAttrName(1) ) == False ) + self.assertTrue( ( "val2" != node.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != node.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != node.getAttrPrefix(1) ) == False ) + self.assertTrue( ( "name3" != node.getAttrName(2) ) == False ) + self.assertTrue( ( "val3" != node.getAttrValue(2) ) == False ) + self.assertTrue( ( "http://name3.org/" != node.getAttrURI(2) ) == False ) + self.assertTrue( ( "p3" != node.getAttrPrefix(2) ) == False ) + self.assertTrue( ( "name4" != node.getAttrName(3) ) == False ) + self.assertTrue( ( "val4" != node.getAttrValue(3) ) == False ) + self.assertTrue( ( "http://name4.org/" != node.getAttrURI(3) ) == False ) + self.assertTrue( ( "p4" != node.getAttrPrefix(3) ) == False ) + self.assertTrue( ( "name5" != node.getAttrName(4) ) == False ) + self.assertTrue( ( "val5" != node.getAttrValue(4) ) == False ) + self.assertTrue( ( "http://name5.org/" != node.getAttrURI(4) ) == False ) + self.assertTrue( ( "p5" != node.getAttrPrefix(4) ) == False ) ntriple = libsbml.XMLTriple("test2","http://test2.org/","p2") node.setTriple(ntriple) - self.assert_( ( "test2" != node.getName() ) == False ) - self.assert_( ( "http://test2.org/" != node.getURI() ) == False ) - self.assert_( ( "p2" != node.getPrefix() ) == False ) + self.assertTrue( ( "test2" != node.getName() ) == False ) + self.assertTrue( ( "http://test2.org/" != node.getURI() ) == False ) + self.assertTrue( ( "p2" != node.getPrefix() ) == False ) node.clearAttributes() - self.assert_( node.getAttributesLength() == 0 ) - self.assert_( node.isAttributesEmpty() != False ) + self.assertTrue( node.getAttributesLength() == 0 ) + self.assertTrue( node.isAttributesEmpty() != False ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ ntriple ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList @@ -230,15 +230,15 @@ def test_XMLNode_convert(self): gchild = child.getChild(0) attr = child.getAttributes() ns = child.getNamespaces() - self.assert_( ( "annotation" != node.getName() ) == False ) - self.assert_( ( "test" != child.getName() ) == False ) - self.assert_( ( "test" != gchild.getCharacters() ) == False ) - self.assert_( ( "id" != attr.getName(0) ) == False ) - self.assert_( ( "test" != attr.getValue(0) ) == False ) - self.assert_( ( "http://test.org/" != ns.getURI(0) ) == False ) - self.assert_( ns.getPrefix(0) == "" ) + self.assertTrue( ( "annotation" != node.getName() ) == False ) + self.assertTrue( ( "test" != child.getName() ) == False ) + self.assertTrue( ( "test" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "id" != attr.getName(0) ) == False ) + self.assertTrue( ( "test" != attr.getValue(0) ) == False ) + self.assertTrue( ( "http://test.org/" != ns.getURI(0) ) == False ) + self.assertTrue( ns.getPrefix(0) == "" ) toxmlstring = node.toXMLString() - self.assert_( ( xmlstr != toxmlstring ) == False ) + self.assertTrue( ( xmlstr != toxmlstring ) == False ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass @@ -251,98 +251,98 @@ def test_XMLNode_convert_dummyroot(self): xmlstr_dummy1 = "<p>test1</p><p>test2</p>"; xmlstr_dummy2 = "<test1>test1</test1><test2>test2</test2>"; rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_nodummy1,None) - self.assert_( rootnode.getNumChildren() == 1 ) + self.assertTrue( rootnode.getNumChildren() == 1 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "notes" != rootnode.getName() ) == False ) - self.assert_( ( "p" != child.getName() ) == False ) - self.assert_( ( "test" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "notes" != rootnode.getName() ) == False ) + self.assertTrue( ( "p" != child.getName() ) == False ) + self.assertTrue( ( "test" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_nodummy1 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_nodummy1 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_nodummy2,None) - self.assert_( rootnode.getNumChildren() == 1 ) + self.assertTrue( rootnode.getNumChildren() == 1 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "html" != rootnode.getName() ) == False ) - self.assert_( ( "p" != child.getName() ) == False ) - self.assert_( ( "test" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "html" != rootnode.getName() ) == False ) + self.assertTrue( ( "p" != child.getName() ) == False ) + self.assertTrue( ( "test" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_nodummy2 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_nodummy2 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_nodummy3,None) - self.assert_( rootnode.getNumChildren() == 1 ) + self.assertTrue( rootnode.getNumChildren() == 1 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "body" != rootnode.getName() ) == False ) - self.assert_( ( "p" != child.getName() ) == False ) - self.assert_( ( "test" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "body" != rootnode.getName() ) == False ) + self.assertTrue( ( "p" != child.getName() ) == False ) + self.assertTrue( ( "test" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_nodummy3 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_nodummy3 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_nodummy4,None) - self.assert_( rootnode.getNumChildren() == 1 ) + self.assertTrue( rootnode.getNumChildren() == 1 ) child = rootnode.getChild(0) - self.assert_( ( "p" != rootnode.getName() ) == False ) - self.assert_( ( "test" != child.getCharacters() ) == False ) + self.assertTrue( ( "p" != rootnode.getName() ) == False ) + self.assertTrue( ( "test" != child.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_nodummy4 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_nodummy4 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_nodummy5,None) - self.assert_( rootnode.getNumChildren() == 1 ) + self.assertTrue( rootnode.getNumChildren() == 1 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "test1" != rootnode.getName() ) == False ) - self.assert_( ( "test2" != child.getName() ) == False ) - self.assert_( ( "test" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "test1" != rootnode.getName() ) == False ) + self.assertTrue( ( "test2" != child.getName() ) == False ) + self.assertTrue( ( "test" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_nodummy5 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_nodummy5 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_dummy1,None) - self.assert_( rootnode.isEOF() == True ) - self.assert_( rootnode.getNumChildren() == 2 ) + self.assertTrue( rootnode.isEOF() == True ) + self.assertTrue( rootnode.getNumChildren() == 2 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "p" != child.getName() ) == False ) - self.assert_( ( "test1" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "p" != child.getName() ) == False ) + self.assertTrue( ( "test1" != gchild.getCharacters() ) == False ) child = rootnode.getChild(1) gchild = child.getChild(0) - self.assert_( ( "p" != child.getName() ) == False ) - self.assert_( ( "test2" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "p" != child.getName() ) == False ) + self.assertTrue( ( "test2" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_dummy1 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_dummy1 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList rootnode = libsbml.XMLNode.convertStringToXMLNode(xmlstr_dummy2,None) - self.assert_( rootnode.isEOF() == True ) - self.assert_( rootnode.getNumChildren() == 2 ) + self.assertTrue( rootnode.isEOF() == True ) + self.assertTrue( rootnode.getNumChildren() == 2 ) child = rootnode.getChild(0) gchild = child.getChild(0) - self.assert_( ( "test1" != child.getName() ) == False ) - self.assert_( ( "test1" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "test1" != child.getName() ) == False ) + self.assertTrue( ( "test1" != gchild.getCharacters() ) == False ) child = rootnode.getChild(1) gchild = child.getChild(0) - self.assert_( ( "test2" != child.getName() ) == False ) - self.assert_( ( "test2" != gchild.getCharacters() ) == False ) + self.assertTrue( ( "test2" != child.getName() ) == False ) + self.assertTrue( ( "test2" != gchild.getCharacters() ) == False ) toxmlstring = rootnode.toXMLString() - self.assert_( ( xmlstr_dummy2 != toxmlstring ) == False ) + self.assertTrue( ( xmlstr_dummy2 != toxmlstring ) == False ) _dummyList = [ rootnode ]; _dummyList[:] = []; del _dummyList pass def test_XMLNode_create(self): node = libsbml.XMLNode() - self.assert_( node != None ) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( node != None ) + self.assertTrue( node.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList node = libsbml.XMLNode() - self.assert_( node != None ) + self.assertTrue( node != None ) node2 = libsbml.XMLNode() - self.assert_( node2 != None ) + self.assertTrue( node2 != None ) node.addChild(node2) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( node.getNumChildren() == 1 ) node3 = libsbml.XMLNode() - self.assert_( node3 != None ) + self.assertTrue( node3 != None ) node.addChild(node3) - self.assert_( node.getNumChildren() == 2 ) + self.assertTrue( node.getNumChildren() == 2 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ node3 ]; _dummyList[:] = []; del _dummyList @@ -359,25 +359,25 @@ def test_XMLNode_createElement(self): ns.add(uri,prefix) attr.add("id", "value",uri,prefix) snode = libsbml.XMLNode(triple,attr,ns) - self.assert_( snode != None ) - self.assert_( snode.getNumChildren() == 0 ) - self.assert_( ( name != snode.getName() ) == False ) - self.assert_( ( prefix != snode.getPrefix() ) == False ) - self.assert_( ( uri != snode.getURI() ) == False ) - self.assert_( snode.isElement() == True ) - self.assert_( snode.isStart() == True ) - self.assert_( snode.isEnd() == False ) - self.assert_( snode.isText() == False ) + self.assertTrue( snode != None ) + self.assertTrue( snode.getNumChildren() == 0 ) + self.assertTrue( ( name != snode.getName() ) == False ) + self.assertTrue( ( prefix != snode.getPrefix() ) == False ) + self.assertTrue( ( uri != snode.getURI() ) == False ) + self.assertTrue( snode.isElement() == True ) + self.assertTrue( snode.isStart() == True ) + self.assertTrue( snode.isEnd() == False ) + self.assertTrue( snode.isText() == False ) snode.setEnd() - self.assert_( snode.isEnd() == True ) + self.assertTrue( snode.isEnd() == True ) snode.unsetEnd() - self.assert_( snode.isEnd() == False ) + self.assertTrue( snode.isEnd() == False ) cattr = snode.getAttributes() - self.assert_( cattr != None ) - self.assert_( ( "id" != cattr.getName(0) ) == False ) - self.assert_( ( "value" != cattr.getValue(0) ) == False ) - self.assert_( ( prefix != cattr.getPrefix(0) ) == False ) - self.assert_( ( uri != cattr.getURI(0) ) == False ) + self.assertTrue( cattr != None ) + self.assertTrue( ( "id" != cattr.getName(0) ) == False ) + self.assertTrue( ( "value" != cattr.getValue(0) ) == False ) + self.assertTrue( ( prefix != cattr.getPrefix(0) ) == False ) + self.assertTrue( ( uri != cattr.getURI(0) ) == False ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList @@ -386,42 +386,42 @@ def test_XMLNode_createElement(self): attr.add("id", "value") triple = libsbml.XMLTriple(name, "", "") snode = libsbml.XMLNode(triple,attr) - self.assert_( snode != None ) - self.assert_( snode.getNumChildren() == 0 ) - self.assert_( ( "test" != snode.getName() ) == False ) - self.assert_( snode.getPrefix() == "" ) - self.assert_( snode.getURI() == "" ) - self.assert_( snode.isElement() == True ) - self.assert_( snode.isStart() == True ) - self.assert_( snode.isEnd() == False ) - self.assert_( snode.isText() == False ) + self.assertTrue( snode != None ) + self.assertTrue( snode.getNumChildren() == 0 ) + self.assertTrue( ( "test" != snode.getName() ) == False ) + self.assertTrue( snode.getPrefix() == "" ) + self.assertTrue( snode.getURI() == "" ) + self.assertTrue( snode.isElement() == True ) + self.assertTrue( snode.isStart() == True ) + self.assertTrue( snode.isEnd() == False ) + self.assertTrue( snode.isText() == False ) cattr = snode.getAttributes() - self.assert_( cattr != None ) - self.assert_( ( "id" != cattr.getName(0) ) == False ) - self.assert_( ( "value" != cattr.getValue(0) ) == False ) - self.assert_( cattr.getPrefix(0) == "" ) - self.assert_( cattr.getURI(0) == "" ) + self.assertTrue( cattr != None ) + self.assertTrue( ( "id" != cattr.getName(0) ) == False ) + self.assertTrue( ( "value" != cattr.getValue(0) ) == False ) + self.assertTrue( cattr.getPrefix(0) == "" ) + self.assertTrue( cattr.getURI(0) == "" ) enode = libsbml.XMLNode(triple) - self.assert_( enode != None ) - self.assert_( enode.getNumChildren() == 0 ) - self.assert_( ( "test" != enode.getName() ) == False ) - self.assert_( enode.getPrefix() == "" ) - self.assert_( enode.getURI() == "" ) - self.assert_( enode.isElement() == True ) - self.assert_( enode.isStart() == False ) - self.assert_( enode.isEnd() == True ) - self.assert_( enode.isText() == False ) + self.assertTrue( enode != None ) + self.assertTrue( enode.getNumChildren() == 0 ) + self.assertTrue( ( "test" != enode.getName() ) == False ) + self.assertTrue( enode.getPrefix() == "" ) + self.assertTrue( enode.getURI() == "" ) + self.assertTrue( enode.isElement() == True ) + self.assertTrue( enode.isStart() == False ) + self.assertTrue( enode.isEnd() == True ) + self.assertTrue( enode.isText() == False ) tnode = libsbml.XMLNode(text) - self.assert_( tnode != None ) - self.assert_( ( text != tnode.getCharacters() ) == False ) - self.assert_( tnode.getNumChildren() == 0 ) - self.assert_( tnode.getName() == "" ) - self.assert_( tnode.getPrefix() == "" ) - self.assert_( tnode.getURI() == "" ) - self.assert_( tnode.isElement() == False ) - self.assert_( tnode.isStart() == False ) - self.assert_( tnode.isEnd() == False ) - self.assert_( tnode.isText() == True ) + self.assertTrue( tnode != None ) + self.assertTrue( ( text != tnode.getCharacters() ) == False ) + self.assertTrue( tnode.getNumChildren() == 0 ) + self.assertTrue( tnode.getName() == "" ) + self.assertTrue( tnode.getPrefix() == "" ) + self.assertTrue( tnode.getURI() == "" ) + self.assertTrue( tnode.isElement() == False ) + self.assertTrue( tnode.isStart() == False ) + self.assertTrue( tnode.isEnd() == False ) + self.assertTrue( tnode.isText() == True ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ snode ]; _dummyList[:] = []; del _dummyList @@ -433,12 +433,12 @@ def test_XMLNode_createFromToken(self): triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple) node = libsbml.XMLNode(token) - self.assert_( node != None ) - self.assert_( node.getNumChildren() == 0 ) - self.assert_( ( "attr" != node.getName() ) == False ) - self.assert_( ( "prefix" != node.getPrefix() ) == False ) - self.assert_( ( "uri" != node.getURI() ) == False ) - self.assert_( node.getChild(1) != None ) + self.assertTrue( node != None ) + self.assertTrue( node.getNumChildren() == 0 ) + self.assertTrue( ( "attr" != node.getName() ) == False ) + self.assertTrue( ( "prefix" != node.getPrefix() ) == False ) + self.assertTrue( ( "uri" != node.getURI() ) == False ) + self.assertTrue( node.getChild(1) != None ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList @@ -449,28 +449,28 @@ def test_XMLNode_getters(self): NS.add( "http://test1.org/", "test1") token = libsbml.XMLToken("This is a test") node = libsbml.XMLNode(token) - self.assert_( node != None ) - self.assert_( node.getNumChildren() == 0 ) - self.assert_( ( "This is a test" != node.getCharacters() ) == False ) - self.assert_( node.getChild(1) != None ) + self.assertTrue( node != None ) + self.assertTrue( node.getNumChildren() == 0 ) + self.assertTrue( ( "This is a test" != node.getCharacters() ) == False ) + self.assertTrue( node.getChild(1) != None ) attr = libsbml.XMLAttributes() - self.assert_( attr != None ) + self.assertTrue( attr != None ) attr.add( "attr2", "value") triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple,attr) - self.assert_( token != None ) + self.assertTrue( token != None ) node = libsbml.XMLNode(token) - self.assert_( ( "attr" != node.getName() ) == False ) - self.assert_( ( "uri" != node.getURI() ) == False ) - self.assert_( ( "prefix" != node.getPrefix() ) == False ) + self.assertTrue( ( "attr" != node.getName() ) == False ) + self.assertTrue( ( "uri" != node.getURI() ) == False ) + self.assertTrue( ( "prefix" != node.getPrefix() ) == False ) returnattr = node.getAttributes() - self.assert_( ( "attr2" != returnattr.getName(0) ) == False ) - self.assert_( ( "value" != returnattr.getValue(0) ) == False ) + self.assertTrue( ( "attr2" != returnattr.getName(0) ) == False ) + self.assertTrue( ( "value" != returnattr.getValue(0) ) == False ) token = libsbml.XMLToken(triple,attr,NS) node = libsbml.XMLNode(token) returnNS = node.getNamespaces() - self.assert_( returnNS.getLength() == 1 ) - self.assert_( returnNS.isEmpty() == False ) + self.assertTrue( returnNS.getLength() == 1 ) + self.assertTrue( returnNS.isEmpty() == False ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList @@ -495,58 +495,58 @@ def test_XMLNode_insert(self): p.insertChild(0,c1) p.insertChild(2,c3) p.insertChild(4,c5) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child1" != p.getChild(0).getName() ) == False ) - self.assert_( ( "child2" != p.getChild(1).getName() ) == False ) - self.assert_( ( "child3" != p.getChild(2).getName() ) == False ) - self.assert_( ( "child4" != p.getChild(3).getName() ) == False ) - self.assert_( ( "child5" != p.getChild(4).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child1" != p.getChild(0).getName() ) == False ) + self.assertTrue( ( "child2" != p.getChild(1).getName() ) == False ) + self.assertTrue( ( "child3" != p.getChild(2).getName() ) == False ) + self.assertTrue( ( "child4" != p.getChild(3).getName() ) == False ) + self.assertTrue( ( "child5" != p.getChild(4).getName() ) == False ) p.removeChildren() p.insertChild(0,c1) p.insertChild(0,c2) p.insertChild(0,c3) p.insertChild(0,c4) p.insertChild(0,c5) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child5" != p.getChild(0).getName() ) == False ) - self.assert_( ( "child4" != p.getChild(1).getName() ) == False ) - self.assert_( ( "child3" != p.getChild(2).getName() ) == False ) - self.assert_( ( "child2" != p.getChild(3).getName() ) == False ) - self.assert_( ( "child1" != p.getChild(4).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child5" != p.getChild(0).getName() ) == False ) + self.assertTrue( ( "child4" != p.getChild(1).getName() ) == False ) + self.assertTrue( ( "child3" != p.getChild(2).getName() ) == False ) + self.assertTrue( ( "child2" != p.getChild(3).getName() ) == False ) + self.assertTrue( ( "child1" != p.getChild(4).getName() ) == False ) p.removeChildren() p.insertChild(1,c1) p.insertChild(2,c2) p.insertChild(3,c3) p.insertChild(4,c4) p.insertChild(5,c5) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child1" != p.getChild(0).getName() ) == False ) - self.assert_( ( "child2" != p.getChild(1).getName() ) == False ) - self.assert_( ( "child3" != p.getChild(2).getName() ) == False ) - self.assert_( ( "child4" != p.getChild(3).getName() ) == False ) - self.assert_( ( "child5" != p.getChild(4).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child1" != p.getChild(0).getName() ) == False ) + self.assertTrue( ( "child2" != p.getChild(1).getName() ) == False ) + self.assertTrue( ( "child3" != p.getChild(2).getName() ) == False ) + self.assertTrue( ( "child4" != p.getChild(3).getName() ) == False ) + self.assertTrue( ( "child5" != p.getChild(4).getName() ) == False ) p.removeChildren() tmp = p.insertChild(0,c1) - self.assert_( ( "child1" != tmp.getName() ) == False ) + self.assertTrue( ( "child1" != tmp.getName() ) == False ) tmp = p.insertChild(0,c2) - self.assert_( ( "child2" != tmp.getName() ) == False ) + self.assertTrue( ( "child2" != tmp.getName() ) == False ) tmp = p.insertChild(0,c3) - self.assert_( ( "child3" != tmp.getName() ) == False ) + self.assertTrue( ( "child3" != tmp.getName() ) == False ) tmp = p.insertChild(0,c4) - self.assert_( ( "child4" != tmp.getName() ) == False ) + self.assertTrue( ( "child4" != tmp.getName() ) == False ) tmp = p.insertChild(0,c5) - self.assert_( ( "child5" != tmp.getName() ) == False ) + self.assertTrue( ( "child5" != tmp.getName() ) == False ) p.removeChildren() tmp = p.insertChild(1,c1) - self.assert_( ( "child1" != tmp.getName() ) == False ) + self.assertTrue( ( "child1" != tmp.getName() ) == False ) tmp = p.insertChild(2,c2) - self.assert_( ( "child2" != tmp.getName() ) == False ) + self.assertTrue( ( "child2" != tmp.getName() ) == False ) tmp = p.insertChild(3,c3) - self.assert_( ( "child3" != tmp.getName() ) == False ) + self.assertTrue( ( "child3" != tmp.getName() ) == False ) tmp = p.insertChild(4,c4) - self.assert_( ( "child4" != tmp.getName() ) == False ) + self.assertTrue( ( "child4" != tmp.getName() ) == False ) tmp = p.insertChild(5,c5) - self.assert_( ( "child5" != tmp.getName() ) == False ) + self.assertTrue( ( "child5" != tmp.getName() ) == False ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ c1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ c2 ]; _dummyList[:] = []; del _dummyList @@ -566,21 +566,21 @@ def test_XMLNode_namespace_add(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) - self.assert_( node.getNamespacesLength() == 0 ) - self.assert_( node.isNamespacesEmpty() == True ) + self.assertTrue( node.getNamespacesLength() == 0 ) + self.assertTrue( node.isNamespacesEmpty() == True ) node.addNamespace( "http://test1.org/", "test1") - self.assert_( node.getNamespacesLength() == 1 ) - self.assert_( node.isNamespacesEmpty() == False ) + self.assertTrue( node.getNamespacesLength() == 1 ) + self.assertTrue( node.isNamespacesEmpty() == False ) node.addNamespace( "http://test2.org/", "test2") - self.assert_( node.getNamespacesLength() == 2 ) - self.assert_( node.isNamespacesEmpty() == False ) + self.assertTrue( node.getNamespacesLength() == 2 ) + self.assertTrue( node.isNamespacesEmpty() == False ) node.addNamespace( "http://test1.org/", "test1a") - self.assert_( node.getNamespacesLength() == 3 ) - self.assert_( node.isNamespacesEmpty() == False ) + self.assertTrue( node.getNamespacesLength() == 3 ) + self.assertTrue( node.isNamespacesEmpty() == False ) node.addNamespace( "http://test1.org/", "test1a") - self.assert_( node.getNamespacesLength() == 3 ) - self.assert_( node.isNamespacesEmpty() == False ) - self.assert_( (node.getNamespaceIndex( "http://test1.org/") == -1) == False ) + self.assertTrue( node.getNamespacesLength() == 3 ) + self.assertTrue( node.isNamespacesEmpty() == False ) + self.assertTrue( (node.getNamespaceIndex( "http://test1.org/") == -1) == False ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -599,34 +599,34 @@ def test_XMLNode_namespace_get(self): node.addNamespace( "http://test7.org/", "test7") node.addNamespace( "http://test8.org/", "test8") node.addNamespace( "http://test9.org/", "test9") - self.assert_( node.getNamespacesLength() == 9 ) - self.assert_( node.getNamespaceIndex( "http://test1.org/") == 0 ) - self.assert_( ( "test2" != node.getNamespacePrefix(1) ) == False ) - self.assert_( ( "test1" != node.getNamespacePrefix( "http://test1.org/") ) == False ) - self.assert_( ( "http://test2.org/" != node.getNamespaceURI(1) ) == False ) - self.assert_( ( "http://test2.org/" != node.getNamespaceURI( "test2") ) == False ) - self.assert_( node.getNamespaceIndex( "http://test1.org/") == 0 ) - self.assert_( node.getNamespaceIndex( "http://test2.org/") == 1 ) - self.assert_( node.getNamespaceIndex( "http://test5.org/") == 4 ) - self.assert_( node.getNamespaceIndex( "http://test9.org/") == 8 ) - self.assert_( node.getNamespaceIndex( "http://testX.org/") == -1 ) - self.assert_( node.hasNamespaceURI( "http://test1.org/") != False ) - self.assert_( node.hasNamespaceURI( "http://test2.org/") != False ) - self.assert_( node.hasNamespaceURI( "http://test5.org/") != False ) - self.assert_( node.hasNamespaceURI( "http://test9.org/") != False ) - self.assert_( node.hasNamespaceURI( "http://testX.org/") == False ) - self.assert_( node.getNamespaceIndexByPrefix( "test1") == 0 ) - self.assert_( node.getNamespaceIndexByPrefix( "test5") == 4 ) - self.assert_( node.getNamespaceIndexByPrefix( "test9") == 8 ) - self.assert_( node.getNamespaceIndexByPrefix( "testX") == -1 ) - self.assert_( node.hasNamespacePrefix( "test1") != False ) - self.assert_( node.hasNamespacePrefix( "test5") != False ) - self.assert_( node.hasNamespacePrefix( "test9") != False ) - self.assert_( node.hasNamespacePrefix( "testX") == False ) - self.assert_( node.hasNamespaceNS( "http://test1.org/", "test1") != False ) - self.assert_( node.hasNamespaceNS( "http://test5.org/", "test5") != False ) - self.assert_( node.hasNamespaceNS( "http://test9.org/", "test9") != False ) - self.assert_( node.hasNamespaceNS( "http://testX.org/", "testX") == False ) + self.assertTrue( node.getNamespacesLength() == 9 ) + self.assertTrue( node.getNamespaceIndex( "http://test1.org/") == 0 ) + self.assertTrue( ( "test2" != node.getNamespacePrefix(1) ) == False ) + self.assertTrue( ( "test1" != node.getNamespacePrefix( "http://test1.org/") ) == False ) + self.assertTrue( ( "http://test2.org/" != node.getNamespaceURI(1) ) == False ) + self.assertTrue( ( "http://test2.org/" != node.getNamespaceURI( "test2") ) == False ) + self.assertTrue( node.getNamespaceIndex( "http://test1.org/") == 0 ) + self.assertTrue( node.getNamespaceIndex( "http://test2.org/") == 1 ) + self.assertTrue( node.getNamespaceIndex( "http://test5.org/") == 4 ) + self.assertTrue( node.getNamespaceIndex( "http://test9.org/") == 8 ) + self.assertTrue( node.getNamespaceIndex( "http://testX.org/") == -1 ) + self.assertTrue( node.hasNamespaceURI( "http://test1.org/") != False ) + self.assertTrue( node.hasNamespaceURI( "http://test2.org/") != False ) + self.assertTrue( node.hasNamespaceURI( "http://test5.org/") != False ) + self.assertTrue( node.hasNamespaceURI( "http://test9.org/") != False ) + self.assertTrue( node.hasNamespaceURI( "http://testX.org/") == False ) + self.assertTrue( node.getNamespaceIndexByPrefix( "test1") == 0 ) + self.assertTrue( node.getNamespaceIndexByPrefix( "test5") == 4 ) + self.assertTrue( node.getNamespaceIndexByPrefix( "test9") == 8 ) + self.assertTrue( node.getNamespaceIndexByPrefix( "testX") == -1 ) + self.assertTrue( node.hasNamespacePrefix( "test1") != False ) + self.assertTrue( node.hasNamespacePrefix( "test5") != False ) + self.assertTrue( node.hasNamespacePrefix( "test9") != False ) + self.assertTrue( node.hasNamespacePrefix( "testX") == False ) + self.assertTrue( node.hasNamespaceNS( "http://test1.org/", "test1") != False ) + self.assertTrue( node.hasNamespaceNS( "http://test5.org/", "test5") != False ) + self.assertTrue( node.hasNamespaceNS( "http://test9.org/", "test9") != False ) + self.assertTrue( node.hasNamespaceNS( "http://testX.org/", "testX") == False ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -641,33 +641,33 @@ def test_XMLNode_namespace_remove(self): node.addNamespace( "http://test3.org/", "test3") node.addNamespace( "http://test4.org/", "test4") node.addNamespace( "http://test5.org/", "test5") - self.assert_( node.getNamespacesLength() == 5 ) + self.assertTrue( node.getNamespacesLength() == 5 ) node.removeNamespace(4) - self.assert_( node.getNamespacesLength() == 4 ) + self.assertTrue( node.getNamespacesLength() == 4 ) node.removeNamespace(3) - self.assert_( node.getNamespacesLength() == 3 ) + self.assertTrue( node.getNamespacesLength() == 3 ) node.removeNamespace(2) - self.assert_( node.getNamespacesLength() == 2 ) + self.assertTrue( node.getNamespacesLength() == 2 ) node.removeNamespace(1) - self.assert_( node.getNamespacesLength() == 1 ) + self.assertTrue( node.getNamespacesLength() == 1 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 0 ) + self.assertTrue( node.getNamespacesLength() == 0 ) node.addNamespace( "http://test1.org/", "test1") node.addNamespace( "http://test2.org/", "test2") node.addNamespace( "http://test3.org/", "test3") node.addNamespace( "http://test4.org/", "test4") node.addNamespace( "http://test5.org/", "test5") - self.assert_( node.getNamespacesLength() == 5 ) + self.assertTrue( node.getNamespacesLength() == 5 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 4 ) + self.assertTrue( node.getNamespacesLength() == 4 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 3 ) + self.assertTrue( node.getNamespacesLength() == 3 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 2 ) + self.assertTrue( node.getNamespacesLength() == 2 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 1 ) + self.assertTrue( node.getNamespacesLength() == 1 ) node.removeNamespace(0) - self.assert_( node.getNamespacesLength() == 0 ) + self.assertTrue( node.getNamespacesLength() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -682,49 +682,49 @@ def test_XMLNode_namespace_remove_by_prefix(self): node.addNamespace( "http://test3.org/", "test3") node.addNamespace( "http://test4.org/", "test4") node.addNamespace( "http://test5.org/", "test5") - self.assert_( node.getNamespacesLength() == 5 ) + self.assertTrue( node.getNamespacesLength() == 5 ) node.removeNamespace( "test1") - self.assert_( node.getNamespacesLength() == 4 ) + self.assertTrue( node.getNamespacesLength() == 4 ) node.removeNamespace( "test2") - self.assert_( node.getNamespacesLength() == 3 ) + self.assertTrue( node.getNamespacesLength() == 3 ) node.removeNamespace( "test3") - self.assert_( node.getNamespacesLength() == 2 ) + self.assertTrue( node.getNamespacesLength() == 2 ) node.removeNamespace( "test4") - self.assert_( node.getNamespacesLength() == 1 ) + self.assertTrue( node.getNamespacesLength() == 1 ) node.removeNamespace( "test5") - self.assert_( node.getNamespacesLength() == 0 ) + self.assertTrue( node.getNamespacesLength() == 0 ) node.addNamespace( "http://test1.org/", "test1") node.addNamespace( "http://test2.org/", "test2") node.addNamespace( "http://test3.org/", "test3") node.addNamespace( "http://test4.org/", "test4") node.addNamespace( "http://test5.org/", "test5") - self.assert_( node.getNamespacesLength() == 5 ) + self.assertTrue( node.getNamespacesLength() == 5 ) node.removeNamespace( "test5") - self.assert_( node.getNamespacesLength() == 4 ) + self.assertTrue( node.getNamespacesLength() == 4 ) node.removeNamespace( "test4") - self.assert_( node.getNamespacesLength() == 3 ) + self.assertTrue( node.getNamespacesLength() == 3 ) node.removeNamespace( "test3") - self.assert_( node.getNamespacesLength() == 2 ) + self.assertTrue( node.getNamespacesLength() == 2 ) node.removeNamespace( "test2") - self.assert_( node.getNamespacesLength() == 1 ) + self.assertTrue( node.getNamespacesLength() == 1 ) node.removeNamespace( "test1") - self.assert_( node.getNamespacesLength() == 0 ) + self.assertTrue( node.getNamespacesLength() == 0 ) node.addNamespace( "http://test1.org/", "test1") node.addNamespace( "http://test2.org/", "test2") node.addNamespace( "http://test3.org/", "test3") node.addNamespace( "http://test4.org/", "test4") node.addNamespace( "http://test5.org/", "test5") - self.assert_( node.getNamespacesLength() == 5 ) + self.assertTrue( node.getNamespacesLength() == 5 ) node.removeNamespace( "test3") - self.assert_( node.getNamespacesLength() == 4 ) + self.assertTrue( node.getNamespacesLength() == 4 ) node.removeNamespace( "test1") - self.assert_( node.getNamespacesLength() == 3 ) + self.assertTrue( node.getNamespacesLength() == 3 ) node.removeNamespace( "test4") - self.assert_( node.getNamespacesLength() == 2 ) + self.assertTrue( node.getNamespacesLength() == 2 ) node.removeNamespace( "test5") - self.assert_( node.getNamespacesLength() == 1 ) + self.assertTrue( node.getNamespacesLength() == 1 ) node.removeNamespace( "test2") - self.assert_( node.getNamespacesLength() == 0 ) + self.assertTrue( node.getNamespacesLength() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -735,29 +735,29 @@ def test_XMLNode_namespace_set_clear(self): attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) ns = libsbml.XMLNamespaces() - self.assert_( node.getNamespacesLength() == 0 ) - self.assert_( node.isNamespacesEmpty() == True ) + self.assertTrue( node.getNamespacesLength() == 0 ) + self.assertTrue( node.isNamespacesEmpty() == True ) ns.add( "http://test1.org/", "test1") ns.add( "http://test2.org/", "test2") ns.add( "http://test3.org/", "test3") ns.add( "http://test4.org/", "test4") ns.add( "http://test5.org/", "test5") node.setNamespaces(ns) - self.assert_( node.getNamespacesLength() == 5 ) - self.assert_( node.isNamespacesEmpty() == False ) - self.assert_( ( "test1" != node.getNamespacePrefix(0) ) == False ) - self.assert_( ( "test2" != node.getNamespacePrefix(1) ) == False ) - self.assert_( ( "test3" != node.getNamespacePrefix(2) ) == False ) - self.assert_( ( "test4" != node.getNamespacePrefix(3) ) == False ) - self.assert_( ( "test5" != node.getNamespacePrefix(4) ) == False ) - self.assert_( ( "http://test1.org/" != node.getNamespaceURI(0) ) == False ) - self.assert_( ( "http://test2.org/" != node.getNamespaceURI(1) ) == False ) - self.assert_( ( "http://test3.org/" != node.getNamespaceURI(2) ) == False ) - self.assert_( ( "http://test4.org/" != node.getNamespaceURI(3) ) == False ) - self.assert_( ( "http://test5.org/" != node.getNamespaceURI(4) ) == False ) + self.assertTrue( node.getNamespacesLength() == 5 ) + self.assertTrue( node.isNamespacesEmpty() == False ) + self.assertTrue( ( "test1" != node.getNamespacePrefix(0) ) == False ) + self.assertTrue( ( "test2" != node.getNamespacePrefix(1) ) == False ) + self.assertTrue( ( "test3" != node.getNamespacePrefix(2) ) == False ) + self.assertTrue( ( "test4" != node.getNamespacePrefix(3) ) == False ) + self.assertTrue( ( "test5" != node.getNamespacePrefix(4) ) == False ) + self.assertTrue( ( "http://test1.org/" != node.getNamespaceURI(0) ) == False ) + self.assertTrue( ( "http://test2.org/" != node.getNamespaceURI(1) ) == False ) + self.assertTrue( ( "http://test3.org/" != node.getNamespaceURI(2) ) == False ) + self.assertTrue( ( "http://test4.org/" != node.getNamespaceURI(3) ) == False ) + self.assertTrue( ( "http://test5.org/" != node.getNamespaceURI(4) ) == False ) node.clearNamespaces() - self.assert_( node.getNamespacesLength() == 0 ) - self.assert_( node.isAttributesEmpty() != False ) + self.assertTrue( node.getNamespacesLength() == 0 ) + self.assertTrue( node.isAttributesEmpty() != False ) _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -784,26 +784,26 @@ def test_XMLNode_remove(self): p.addChild(c4) p.addChild(c5) r = p.removeChild(5) - self.assert_( r == None ) + self.assertTrue( r == None ) r = p.removeChild(1) - self.assert_( p.getNumChildren() == 4 ) - self.assert_( ( "child2" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 4 ) + self.assertTrue( ( "child2" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(3) - self.assert_( p.getNumChildren() == 3 ) - self.assert_( ( "child5" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 3 ) + self.assertTrue( ( "child5" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 2 ) - self.assert_( ( "child1" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 2 ) + self.assertTrue( ( "child1" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(1) - self.assert_( p.getNumChildren() == 1 ) - self.assert_( ( "child4" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 1 ) + self.assertTrue( ( "child4" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 0 ) - self.assert_( ( "child3" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 0 ) + self.assertTrue( ( "child3" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList p.addChild(c1) p.addChild(c2) @@ -811,24 +811,24 @@ def test_XMLNode_remove(self): p.addChild(c4) p.addChild(c5) r = p.removeChild(4) - self.assert_( p.getNumChildren() == 4 ) - self.assert_( ( "child5" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 4 ) + self.assertTrue( ( "child5" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(3) - self.assert_( p.getNumChildren() == 3 ) - self.assert_( ( "child4" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 3 ) + self.assertTrue( ( "child4" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(2) - self.assert_( p.getNumChildren() == 2 ) - self.assert_( ( "child3" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 2 ) + self.assertTrue( ( "child3" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(1) - self.assert_( p.getNumChildren() == 1 ) - self.assert_( ( "child2" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 1 ) + self.assertTrue( ( "child2" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 0 ) - self.assert_( ( "child1" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 0 ) + self.assertTrue( ( "child1" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList p.addChild(c1) p.addChild(c2) @@ -836,24 +836,24 @@ def test_XMLNode_remove(self): p.addChild(c4) p.addChild(c5) r = p.removeChild(0) - self.assert_( p.getNumChildren() == 4 ) - self.assert_( ( "child1" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 4 ) + self.assertTrue( ( "child1" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 3 ) - self.assert_( ( "child2" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 3 ) + self.assertTrue( ( "child2" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 2 ) - self.assert_( ( "child3" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 2 ) + self.assertTrue( ( "child3" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 1 ) - self.assert_( ( "child4" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 1 ) + self.assertTrue( ( "child4" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(0) - self.assert_( p.getNumChildren() == 0 ) - self.assert_( ( "child5" != r.getName() ) == False ) + self.assertTrue( p.getNumChildren() == 0 ) + self.assertTrue( ( "child5" != r.getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList p.addChild(c1) p.addChild(c2) @@ -861,34 +861,34 @@ def test_XMLNode_remove(self): p.addChild(c4) p.addChild(c5) r = p.removeChild(0) - self.assert_( ( "child1" != r.getName() ) == False ) + self.assertTrue( ( "child1" != r.getName() ) == False ) p.insertChild(0,r) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child1" != p.getChild(0).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child1" != p.getChild(0).getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(1) - self.assert_( ( "child2" != r.getName() ) == False ) + self.assertTrue( ( "child2" != r.getName() ) == False ) p.insertChild(1,r) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child2" != p.getChild(1).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child2" != p.getChild(1).getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(2) - self.assert_( ( "child3" != r.getName() ) == False ) + self.assertTrue( ( "child3" != r.getName() ) == False ) p.insertChild(2,r) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child3" != p.getChild(2).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child3" != p.getChild(2).getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(3) - self.assert_( ( "child4" != r.getName() ) == False ) + self.assertTrue( ( "child4" != r.getName() ) == False ) p.insertChild(3,r) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child4" != p.getChild(3).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child4" != p.getChild(3).getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList r = p.removeChild(4) - self.assert_( ( "child5" != r.getName() ) == False ) + self.assertTrue( ( "child5" != r.getName() ) == False ) p.insertChild(4,r) - self.assert_( p.getNumChildren() == 5 ) - self.assert_( ( "child5" != p.getChild(4).getName() ) == False ) + self.assertTrue( p.getNumChildren() == 5 ) + self.assertTrue( ( "child5" != p.getChild(4).getName() ) == False ) _dummyList = [ r ]; _dummyList[:] = []; del _dummyList _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ c1 ]; _dummyList[:] = []; del _dummyList diff --git a/src/bindings/python/test/xml/TestXMLNode_newSetters.py b/src/bindings/python/test/xml/TestXMLNode_newSetters.py index 5fd632211f..0f1cd1738d 100644 --- a/src/bindings/python/test/xml/TestXMLNode_newSetters.py +++ b/src/bindings/python/test/xml/TestXMLNode_newSetters.py @@ -41,8 +41,8 @@ def test_XMLNode_addChild1(self): node = libsbml.XMLNode() node2 = libsbml.XMLNode() i = node.addChild(node2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList pass @@ -53,8 +53,8 @@ def test_XMLNode_addChild2(self): node = libsbml.XMLNode(triple,attr) node2 = libsbml.XMLNode() i = node.addChild(node2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 1 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList @@ -66,8 +66,8 @@ def test_XMLNode_addChild3(self): node = libsbml.XMLNode(triple) node2 = libsbml.XMLNode() i = node.addChild(node2) - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( node.getNumChildren() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList @@ -80,20 +80,20 @@ def test_XMLNode_clearAttributes(self): xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr( "name1", "val1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 1 ) i = node.addAttr( "name2", "val2", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 2 ) i = node.addAttr(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 3 ) i = node.addAttr( "name4", "val4") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 4 ) i = node.clearAttributes() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 0 ) _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -106,17 +106,17 @@ def test_XMLNode_clearNamespaces(self): attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) i = node.addNamespace( "http://test1.org/", "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 1 ) + self.assertTrue( nms.getLength() == 1 ) i = node.addNamespace( "http://test2.org/", "test2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 2 ) + self.assertTrue( nms.getLength() == 2 ) i = node.clearNamespaces() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 0 ) + self.assertTrue( nms.getLength() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList @@ -129,38 +129,38 @@ def test_XMLNode_removeAttributes(self): xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") xt1 = libsbml.XMLTriple("name5", "http://name5.org/", "p5") i = node.addAttr( "name1", "val1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 1 ) i = node.addAttr( "name2", "val2", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 2 ) i = node.addAttr(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 3 ) i = node.addAttr( "name4", "val4") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 4 ) i = node.removeAttr(7) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = node.removeAttr( "name7") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = node.removeAttr( "name7", "namespaces7") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = node.removeAttr(xt1) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( node.getAttributes().getLength() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( node.getAttributes().getLength() == 4 ) i = node.removeAttr(3) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 3 ) i = node.removeAttr( "name1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 2 ) i = node.removeAttr( "name2", "http://name1.org/") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 1 ) i = node.removeAttr(xt2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getAttributes().getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getAttributes().getLength() == 0 ) _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -174,10 +174,10 @@ def test_XMLNode_removeChildren(self): node3 = libsbml.XMLNode() node.addChild(node2) node.addChild(node3) - self.assert_( node.getNumChildren() == 2 ) + self.assertTrue( node.getNumChildren() == 2 ) i = node.removeChildren() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( node.getNumChildren() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( node.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList _dummyList = [ node2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ node3 ]; _dummyList[:] = []; del _dummyList @@ -188,29 +188,29 @@ def test_XMLNode_removeNamespaces(self): attr = libsbml.XMLAttributes() node = libsbml.XMLNode(triple,attr) i = node.addNamespace( "http://test1.org/", "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 1 ) + self.assertTrue( nms.getLength() == 1 ) i = node.addNamespace( "http://test2.org/", "test2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 2 ) + self.assertTrue( nms.getLength() == 2 ) i = node.removeNamespace(7) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 2 ) + self.assertTrue( nms.getLength() == 2 ) i = node.removeNamespace( "name7") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 2 ) + self.assertTrue( nms.getLength() == 2 ) i = node.removeNamespace(0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 1 ) + self.assertTrue( nms.getLength() == 1 ) i = node.removeNamespace( "test2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) nms = node.getNamespaces() - self.assert_( nms.getLength() == 0 ) + self.assertTrue( nms.getLength() == 0 ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ node ]; _dummyList[:] = []; del _dummyList diff --git a/src/bindings/python/test/xml/TestXMLOutputStream.py b/src/bindings/python/test/xml/TestXMLOutputStream.py index 94bf335ef1..85a32d5d15 100644 --- a/src/bindings/python/test/xml/TestXMLOutputStream.py +++ b/src/bindings/python/test/xml/TestXMLOutputStream.py @@ -59,7 +59,7 @@ def test_XMLOutputStream_CharacterReference(self): stream.endElement( "testcr") expected = "<testcr chars=\"one\" amp=\"&\" deccr=\"¨\" hexcr=\"¨\" lhexcr=\"¨\" nodeccr1=\"&#01688\" nodeccr2=\"&#;\" nodeccr3=\"&#00a8;\" nodeccr4=\"&#00A8;\" nohexcr1=\"&#x;\" nohexcr2=\"&#xABCD\"/>"; s = oss.str() - self.assert_(( expected == s )) + self.assertTrue(( expected == s )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass @@ -80,7 +80,7 @@ def test_XMLOutputStream_Elements(self): stream.endElement( "fred") expected = "<fred chars=\"two\" bool=\"true\" double=\"2.4\" long=\"123456789\" uint=\"5\" int=\"-3\"/>"; s = oss.str() - self.assert_(( expected == s )) + self.assertTrue(( expected == s )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass @@ -101,19 +101,19 @@ def test_XMLOutputStream_PredefinedEntity(self): stream.endElement( "testpde") expected = "<testpde amp=\"&\" apos=\"'\" gt=\">\" lt=\"<\" quot=\""\" pdeamp=\"&\" pdeapos=\"'\" pdegt=\">\" pdelt=\"<\" pdequot=\""\"/>"; s = oss.str() - self.assert_(( expected == s )) + self.assertTrue(( expected == s )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass def test_XMLOutputStream_createStdout(self): stream = libsbml.XMLOutputStream(libsbml.cout,"UTF-8",False) - self.assert_( stream != None ) + self.assertTrue( stream != None ) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass def test_XMLOutputStream_createStdoutWithProgramInfo(self): stream = libsbml.XMLOutputStream(libsbml.cout,"UTF-8",False, "foo", "bar") - self.assert_( stream != None ) + self.assertTrue( stream != None ) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass @@ -121,9 +121,9 @@ def test_XMLOutputStream_createString(self): expected = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"; oss = libsbml.ostringstream() stream = libsbml.XMLOutputStream(oss,"UTF-8",True) - self.assert_( stream != None ) + self.assertTrue( stream != None ) str = oss.str() - self.assert_(( expected == str )) + self.assertTrue(( expected == str )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass @@ -131,19 +131,19 @@ def test_XMLOutputStream_createStringWithProgramInfo(self): expected = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"; oss = libsbml.ostringstream() stream = libsbml.XMLOutputStream(oss,"UTF-8",True, "", "") - self.assert_( stream != None ) + self.assertTrue( stream != None ) str = oss.str() - self.assert_(( expected == str )) + self.assertTrue(( expected == str )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass def test_XMLOutputStream_startEnd(self): oss = libsbml.ostringstream() stream = libsbml.XMLOutputStream(oss,"",False) - self.assert_( stream != None ) + self.assertTrue( stream != None ) stream.startEndElement( "id") str = oss.str() - self.assert_(( "<id/>" == str )) + self.assertTrue(( "<id/>" == str )) _dummyList = [ stream ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/xml/TestXMLToken.py b/src/bindings/python/test/xml/TestXMLToken.py index 8ab05e4000..756ea6bc3f 100644 --- a/src/bindings/python/test/xml/TestXMLToken.py +++ b/src/bindings/python/test/xml/TestXMLToken.py @@ -48,109 +48,109 @@ def test_XMLToken_attribute_add_remove(self): xt2a = libsbml.XMLTriple("name2", "http://name2a.org/", "p2a") token.addAttr( "name1", "val1", "http://name1.org/", "p1") token.addAttr(xt2, "val2") - self.assert_( token.getAttributesLength() == 2 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name1" != token.getAttrName(0) ) == False ) - self.assert_( ( "val1" != token.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != token.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != token.getAttrName(1) ) == False ) - self.assert_( ( "val2" != token.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != token.getAttrPrefix(1) ) == False ) - self.assert_( token.getAttrValue( "name1") == "" ) - self.assert_( token.getAttrValue( "name2") == "" ) - self.assert_( ( "val1" != token.getAttrValue( "name1", "http://name1.org/") ) == False ) - self.assert_( ( "val2" != token.getAttrValue( "name2", "http://name2.org/") ) == False ) - self.assert_( ( "val1" != token.getAttrValue(xt1) ) == False ) - self.assert_( ( "val2" != token.getAttrValue(xt2) ) == False ) - self.assert_( token.hasAttr(-1) == False ) - self.assert_( token.hasAttr(2) == False ) - self.assert_( token.hasAttr(0) == True ) - self.assert_( token.hasAttr( "name1", "http://name1.org/") == True ) - self.assert_( token.hasAttr( "name2", "http://name2.org/") == True ) - self.assert_( token.hasAttr( "name3", "http://name3.org/") == False ) - self.assert_( token.hasAttr(xt1) == True ) - self.assert_( token.hasAttr(xt2) == True ) - self.assert_( token.hasAttr(xt3) == False ) + self.assertTrue( token.getAttributesLength() == 2 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "val1" != token.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != token.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != token.getAttrName(1) ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != token.getAttrPrefix(1) ) == False ) + self.assertTrue( token.getAttrValue( "name1") == "" ) + self.assertTrue( token.getAttrValue( "name2") == "" ) + self.assertTrue( ( "val1" != token.getAttrValue( "name1", "http://name1.org/") ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue( "name2", "http://name2.org/") ) == False ) + self.assertTrue( ( "val1" != token.getAttrValue(xt1) ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue(xt2) ) == False ) + self.assertTrue( token.hasAttr(-1) == False ) + self.assertTrue( token.hasAttr(2) == False ) + self.assertTrue( token.hasAttr(0) == True ) + self.assertTrue( token.hasAttr( "name1", "http://name1.org/") == True ) + self.assertTrue( token.hasAttr( "name2", "http://name2.org/") == True ) + self.assertTrue( token.hasAttr( "name3", "http://name3.org/") == False ) + self.assertTrue( token.hasAttr(xt1) == True ) + self.assertTrue( token.hasAttr(xt2) == True ) + self.assertTrue( token.hasAttr(xt3) == False ) token.addAttr( "noprefix", "val3") - self.assert_( token.getAttributesLength() == 3 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != token.getAttrName(2) ) == False ) - self.assert_( ( "val3" != token.getAttrValue(2) ) == False ) - self.assert_( token.getAttrURI(2) == "" ) - self.assert_( token.getAttrPrefix(2) == "" ) - self.assert_( ( "val3" != token.getAttrValue( "noprefix") ) == False ) - self.assert_( ( "val3" != token.getAttrValue( "noprefix", "") ) == False ) - self.assert_( token.hasAttr( "noprefix" ) == True ) - self.assert_( token.hasAttr( "noprefix", "") == True ) + self.assertTrue( token.getAttributesLength() == 3 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != token.getAttrName(2) ) == False ) + self.assertTrue( ( "val3" != token.getAttrValue(2) ) == False ) + self.assertTrue( token.getAttrURI(2) == "" ) + self.assertTrue( token.getAttrPrefix(2) == "" ) + self.assertTrue( ( "val3" != token.getAttrValue( "noprefix") ) == False ) + self.assertTrue( ( "val3" != token.getAttrValue( "noprefix", "") ) == False ) + self.assertTrue( token.hasAttr( "noprefix" ) == True ) + self.assertTrue( token.hasAttr( "noprefix", "") == True ) token.addAttr(xt1, "mval1") token.addAttr( "name2", "mval2", "http://name2.org/", "p2") - self.assert_( token.getAttributesLength() == 3 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name1" != token.getAttrName(0) ) == False ) - self.assert_( ( "mval1" != token.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != token.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != token.getAttrName(1) ) == False ) - self.assert_( ( "mval2" != token.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != token.getAttrPrefix(1) ) == False ) - self.assert_( token.hasAttr(xt1) == True ) - self.assert_( token.hasAttr( "name1", "http://name1.org/") == True ) + self.assertTrue( token.getAttributesLength() == 3 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "mval1" != token.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != token.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != token.getAttrName(1) ) == False ) + self.assertTrue( ( "mval2" != token.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != token.getAttrPrefix(1) ) == False ) + self.assertTrue( token.hasAttr(xt1) == True ) + self.assertTrue( token.hasAttr( "name1", "http://name1.org/") == True ) token.addAttr( "noprefix", "mval3") - self.assert_( token.getAttributesLength() == 3 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != token.getAttrName(2) ) == False ) - self.assert_( ( "mval3" != token.getAttrValue(2) ) == False ) - self.assert_( token.getAttrURI(2) == "" ) - self.assert_( token.getAttrPrefix(2) == "" ) - self.assert_( token.hasAttr( "noprefix") == True ) - self.assert_( token.hasAttr( "noprefix", "") == True ) + self.assertTrue( token.getAttributesLength() == 3 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != token.getAttrName(2) ) == False ) + self.assertTrue( ( "mval3" != token.getAttrValue(2) ) == False ) + self.assertTrue( token.getAttrURI(2) == "" ) + self.assertTrue( token.getAttrPrefix(2) == "" ) + self.assertTrue( token.hasAttr( "noprefix") == True ) + self.assertTrue( token.hasAttr( "noprefix", "") == True ) token.addAttr(xt1a, "val1a") token.addAttr(xt2a, "val2a") - self.assert_( token.getAttributesLength() == 5 ) - self.assert_( ( "name1" != token.getAttrName(3) ) == False ) - self.assert_( ( "val1a" != token.getAttrValue(3) ) == False ) - self.assert_( ( "http://name1a.org/" != token.getAttrURI(3) ) == False ) - self.assert_( ( "p1a" != token.getAttrPrefix(3) ) == False ) - self.assert_( ( "name2" != token.getAttrName(4) ) == False ) - self.assert_( ( "val2a" != token.getAttrValue(4) ) == False ) - self.assert_( ( "http://name2a.org/" != token.getAttrURI(4) ) == False ) - self.assert_( ( "p2a" != token.getAttrPrefix(4) ) == False ) - self.assert_( ( "val1a" != token.getAttrValue( "name1", "http://name1a.org/") ) == False ) - self.assert_( ( "val2a" != token.getAttrValue( "name2", "http://name2a.org/") ) == False ) - self.assert_( ( "val1a" != token.getAttrValue(xt1a) ) == False ) - self.assert_( ( "val2a" != token.getAttrValue(xt2a) ) == False ) + self.assertTrue( token.getAttributesLength() == 5 ) + self.assertTrue( ( "name1" != token.getAttrName(3) ) == False ) + self.assertTrue( ( "val1a" != token.getAttrValue(3) ) == False ) + self.assertTrue( ( "http://name1a.org/" != token.getAttrURI(3) ) == False ) + self.assertTrue( ( "p1a" != token.getAttrPrefix(3) ) == False ) + self.assertTrue( ( "name2" != token.getAttrName(4) ) == False ) + self.assertTrue( ( "val2a" != token.getAttrValue(4) ) == False ) + self.assertTrue( ( "http://name2a.org/" != token.getAttrURI(4) ) == False ) + self.assertTrue( ( "p2a" != token.getAttrPrefix(4) ) == False ) + self.assertTrue( ( "val1a" != token.getAttrValue( "name1", "http://name1a.org/") ) == False ) + self.assertTrue( ( "val2a" != token.getAttrValue( "name2", "http://name2a.org/") ) == False ) + self.assertTrue( ( "val1a" != token.getAttrValue(xt1a) ) == False ) + self.assertTrue( ( "val2a" != token.getAttrValue(xt2a) ) == False ) token.removeAttr(xt1a) token.removeAttr(xt2a) - self.assert_( token.getAttributesLength() == 3 ) + self.assertTrue( token.getAttributesLength() == 3 ) token.removeAttr( "name1", "http://name1.org/") - self.assert_( token.getAttributesLength() == 2 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name2" != token.getAttrName(0) ) == False ) - self.assert_( ( "mval2" != token.getAttrValue(0) ) == False ) - self.assert_( ( "http://name2.org/" != token.getAttrURI(0) ) == False ) - self.assert_( ( "p2" != token.getAttrPrefix(0) ) == False ) - self.assert_( ( "noprefix" != token.getAttrName(1) ) == False ) - self.assert_( ( "mval3" != token.getAttrValue(1) ) == False ) - self.assert_( token.getAttrURI(1) == "" ) - self.assert_( token.getAttrPrefix(1) == "" ) - self.assert_( token.hasAttr( "name1", "http://name1.org/") == False ) + self.assertTrue( token.getAttributesLength() == 2 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name2" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "mval2" != token.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name2.org/" != token.getAttrURI(0) ) == False ) + self.assertTrue( ( "p2" != token.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "noprefix" != token.getAttrName(1) ) == False ) + self.assertTrue( ( "mval3" != token.getAttrValue(1) ) == False ) + self.assertTrue( token.getAttrURI(1) == "" ) + self.assertTrue( token.getAttrPrefix(1) == "" ) + self.assertTrue( token.hasAttr( "name1", "http://name1.org/") == False ) token.removeAttr(xt2) - self.assert_( token.getAttributesLength() == 1 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "noprefix" != token.getAttrName(0) ) == False ) - self.assert_( ( "mval3" != token.getAttrValue(0) ) == False ) - self.assert_( token.getAttrURI(0) == "" ) - self.assert_( token.getAttrPrefix(0) == "" ) - self.assert_( token.hasAttr(xt2) == False ) - self.assert_( token.hasAttr( "name2", "http://name2.org/") == False ) + self.assertTrue( token.getAttributesLength() == 1 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "noprefix" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "mval3" != token.getAttrValue(0) ) == False ) + self.assertTrue( token.getAttrURI(0) == "" ) + self.assertTrue( token.getAttrPrefix(0) == "" ) + self.assertTrue( token.hasAttr(xt2) == False ) + self.assertTrue( token.hasAttr( "name2", "http://name2.org/") == False ) token.removeAttr( "noprefix") - self.assert_( token.getAttributesLength() == 0 ) - self.assert_( token.isAttributesEmpty() == True ) - self.assert_( token.hasAttr( "noprefix" ) == False ) - self.assert_( token.hasAttr( "noprefix", "") == False ) + self.assertTrue( token.getAttributesLength() == 0 ) + self.assertTrue( token.isAttributesEmpty() == True ) + self.assertTrue( token.hasAttr( "noprefix" ) == False ) + self.assertTrue( token.hasAttr( "noprefix", "") == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList @@ -177,36 +177,36 @@ def test_XMLToken_attribute_set_clear(self): nattr.add(xt4, "val4") nattr.add(xt5, "val5") token.setAttributes(nattr) - self.assert_( token.getAttributesLength() == 5 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name1" != token.getAttrName(0) ) == False ) - self.assert_( ( "val1" != token.getAttrValue(0) ) == False ) - self.assert_( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) - self.assert_( ( "p1" != token.getAttrPrefix(0) ) == False ) - self.assert_( ( "name2" != token.getAttrName(1) ) == False ) - self.assert_( ( "val2" != token.getAttrValue(1) ) == False ) - self.assert_( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) - self.assert_( ( "p2" != token.getAttrPrefix(1) ) == False ) - self.assert_( ( "name3" != token.getAttrName(2) ) == False ) - self.assert_( ( "val3" != token.getAttrValue(2) ) == False ) - self.assert_( ( "http://name3.org/" != token.getAttrURI(2) ) == False ) - self.assert_( ( "p3" != token.getAttrPrefix(2) ) == False ) - self.assert_( ( "name4" != token.getAttrName(3) ) == False ) - self.assert_( ( "val4" != token.getAttrValue(3) ) == False ) - self.assert_( ( "http://name4.org/" != token.getAttrURI(3) ) == False ) - self.assert_( ( "p4" != token.getAttrPrefix(3) ) == False ) - self.assert_( ( "name5" != token.getAttrName(4) ) == False ) - self.assert_( ( "val5" != token.getAttrValue(4) ) == False ) - self.assert_( ( "http://name5.org/" != token.getAttrURI(4) ) == False ) - self.assert_( ( "p5" != token.getAttrPrefix(4) ) == False ) + self.assertTrue( token.getAttributesLength() == 5 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "val1" != token.getAttrValue(0) ) == False ) + self.assertTrue( ( "http://name1.org/" != token.getAttrURI(0) ) == False ) + self.assertTrue( ( "p1" != token.getAttrPrefix(0) ) == False ) + self.assertTrue( ( "name2" != token.getAttrName(1) ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name2.org/" != token.getAttrURI(1) ) == False ) + self.assertTrue( ( "p2" != token.getAttrPrefix(1) ) == False ) + self.assertTrue( ( "name3" != token.getAttrName(2) ) == False ) + self.assertTrue( ( "val3" != token.getAttrValue(2) ) == False ) + self.assertTrue( ( "http://name3.org/" != token.getAttrURI(2) ) == False ) + self.assertTrue( ( "p3" != token.getAttrPrefix(2) ) == False ) + self.assertTrue( ( "name4" != token.getAttrName(3) ) == False ) + self.assertTrue( ( "val4" != token.getAttrValue(3) ) == False ) + self.assertTrue( ( "http://name4.org/" != token.getAttrURI(3) ) == False ) + self.assertTrue( ( "p4" != token.getAttrPrefix(3) ) == False ) + self.assertTrue( ( "name5" != token.getAttrName(4) ) == False ) + self.assertTrue( ( "val5" != token.getAttrValue(4) ) == False ) + self.assertTrue( ( "http://name5.org/" != token.getAttrURI(4) ) == False ) + self.assertTrue( ( "p5" != token.getAttrPrefix(4) ) == False ) ntriple = libsbml.XMLTriple("test2","http://test2.org/","p2") token.setTriple(ntriple) - self.assert_( ( "test2" != token.getName() ) == False ) - self.assert_( ( "http://test2.org/" != token.getURI() ) == False ) - self.assert_( ( "p2" != token.getPrefix() ) == False ) + self.assertTrue( ( "test2" != token.getName() ) == False ) + self.assertTrue( ( "http://test2.org/" != token.getURI() ) == False ) + self.assertTrue( ( "p2" != token.getPrefix() ) == False ) token.clearAttributes() - self.assert_( token.getAttributesLength() == 0 ) - self.assert_( token.isAttributesEmpty() != False ) + self.assertTrue( token.getAttributesLength() == 0 ) + self.assertTrue( token.isAttributesEmpty() != False ) _dummyList = [ nattr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ ntriple ]; _dummyList[:] = []; del _dummyList @@ -221,33 +221,33 @@ def test_XMLToken_attribute_set_clear(self): def test_XMLToken_chars(self): token = libsbml.XMLToken("This is text") - self.assert_( token.isElement() == False ) - self.assert_( token.isEnd() == False ) - self.assert_( token.isStart() == False ) - self.assert_( token.isText() == True ) - self.assert_( token.isEOF() == False ) - self.assert_( ( "This is text" != token.getCharacters() ) == False ) + self.assertTrue( token.isElement() == False ) + self.assertTrue( token.isEnd() == False ) + self.assertTrue( token.isStart() == False ) + self.assertTrue( token.isText() == True ) + self.assertTrue( token.isEOF() == False ) + self.assertTrue( ( "This is text" != token.getCharacters() ) == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass def test_XMLToken_create(self): token = libsbml.XMLToken() - self.assert_( token != None ) + self.assertTrue( token != None ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple) - self.assert_( token != None ) - self.assert_( ( "attr" != token.getName() ) == False ) - self.assert_( ( "prefix" != token.getPrefix() ) == False ) - self.assert_( ( "uri" != token.getURI() ) == False ) + self.assertTrue( token != None ) + self.assertTrue( ( "attr" != token.getName() ) == False ) + self.assertTrue( ( "prefix" != token.getPrefix() ) == False ) + self.assertTrue( ( "uri" != token.getURI() ) == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList attr = libsbml.XMLAttributes() - self.assert_( attr != None ) + self.assertTrue( attr != None ) attr.add( "attr2", "value") token = libsbml.XMLToken(triple,attr) - self.assert_( token != None ) + self.assertTrue( token != None ) returnattr = token.getAttributes() - self.assert_( ( "attr2" != returnattr.getName(0) ) == False ) + self.assertTrue( ( "attr2" != returnattr.getName(0) ) == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -256,14 +256,14 @@ def test_XMLToken_create(self): def test_XMLToken_fields(self): triple = libsbml.XMLTriple("attr", "uri", "prefix") token = libsbml.XMLToken(triple) - self.assert_( token.isElement() == True ) - self.assert_( token.isEnd() == True ) - self.assert_( token.isStart() == False ) - self.assert_( token.isText() == False ) - self.assert_( token.isEOF() == False ) - self.assert_( ( "attr" != token.getName() ) == False ) - self.assert_( ( "uri" != token.getURI() ) == False ) - self.assert_( ( "prefix" != token.getPrefix() ) == False ) + self.assertTrue( token.isElement() == True ) + self.assertTrue( token.isEnd() == True ) + self.assertTrue( token.isStart() == False ) + self.assertTrue( token.isText() == False ) + self.assertTrue( token.isEOF() == False ) + self.assertTrue( ( "attr" != token.getName() ) == False ) + self.assertTrue( ( "uri" != token.getURI() ) == False ) + self.assertTrue( ( "prefix" != token.getPrefix() ) == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList pass @@ -272,21 +272,21 @@ def test_XMLToken_namespace_add(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) token.addNamespace( "http://test1.org/", "test1") - self.assert_( token.getNamespacesLength() == 1 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( token.getNamespacesLength() == 1 ) + self.assertTrue( token.isNamespacesEmpty() == False ) token.addNamespace( "http://test2.org/", "test2") - self.assert_( token.getNamespacesLength() == 2 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( token.getNamespacesLength() == 2 ) + self.assertTrue( token.isNamespacesEmpty() == False ) token.addNamespace( "http://test1.org/", "test1a") - self.assert_( token.getNamespacesLength() == 3 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( token.getNamespacesLength() == 3 ) + self.assertTrue( token.isNamespacesEmpty() == False ) token.addNamespace( "http://test1.org/", "test1a") - self.assert_( token.getNamespacesLength() == 3 ) - self.assert_( token.isNamespacesEmpty() == False ) - self.assert_( (token.getNamespaceIndex( "http://test1.org/") == -1) == False ) + self.assertTrue( token.getNamespacesLength() == 3 ) + self.assertTrue( token.isNamespacesEmpty() == False ) + self.assertTrue( (token.getNamespaceIndex( "http://test1.org/") == -1) == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -305,34 +305,34 @@ def test_XMLToken_namespace_get(self): token.addNamespace( "http://test7.org/", "test7") token.addNamespace( "http://test8.org/", "test8") token.addNamespace( "http://test9.org/", "test9") - self.assert_( token.getNamespacesLength() == 9 ) - self.assert_( token.getNamespaceIndex( "http://test1.org/") == 0 ) - self.assert_( ( "test2" != token.getNamespacePrefix(1) ) == False ) - self.assert_( ( "test1" != token.getNamespacePrefix( "http://test1.org/") ) == False ) - self.assert_( ( "http://test2.org/" != token.getNamespaceURI(1) ) == False ) - self.assert_( ( "http://test2.org/" != token.getNamespaceURI( "test2") ) == False ) - self.assert_( token.getNamespaceIndex( "http://test1.org/") == 0 ) - self.assert_( token.getNamespaceIndex( "http://test2.org/") == 1 ) - self.assert_( token.getNamespaceIndex( "http://test5.org/") == 4 ) - self.assert_( token.getNamespaceIndex( "http://test9.org/") == 8 ) - self.assert_( token.getNamespaceIndex( "http://testX.org/") == -1 ) - self.assert_( token.hasNamespaceURI( "http://test1.org/") != False ) - self.assert_( token.hasNamespaceURI( "http://test2.org/") != False ) - self.assert_( token.hasNamespaceURI( "http://test5.org/") != False ) - self.assert_( token.hasNamespaceURI( "http://test9.org/") != False ) - self.assert_( token.hasNamespaceURI( "http://testX.org/") == False ) - self.assert_( token.getNamespaceIndexByPrefix( "test1") == 0 ) - self.assert_( token.getNamespaceIndexByPrefix( "test5") == 4 ) - self.assert_( token.getNamespaceIndexByPrefix( "test9") == 8 ) - self.assert_( token.getNamespaceIndexByPrefix( "testX") == -1 ) - self.assert_( token.hasNamespacePrefix( "test1") != False ) - self.assert_( token.hasNamespacePrefix( "test5") != False ) - self.assert_( token.hasNamespacePrefix( "test9") != False ) - self.assert_( token.hasNamespacePrefix( "testX") == False ) - self.assert_( token.hasNamespaceNS( "http://test1.org/", "test1") != False ) - self.assert_( token.hasNamespaceNS( "http://test5.org/", "test5") != False ) - self.assert_( token.hasNamespaceNS( "http://test9.org/", "test9") != False ) - self.assert_( token.hasNamespaceNS( "http://testX.org/", "testX") == False ) + self.assertTrue( token.getNamespacesLength() == 9 ) + self.assertTrue( token.getNamespaceIndex( "http://test1.org/") == 0 ) + self.assertTrue( ( "test2" != token.getNamespacePrefix(1) ) == False ) + self.assertTrue( ( "test1" != token.getNamespacePrefix( "http://test1.org/") ) == False ) + self.assertTrue( ( "http://test2.org/" != token.getNamespaceURI(1) ) == False ) + self.assertTrue( ( "http://test2.org/" != token.getNamespaceURI( "test2") ) == False ) + self.assertTrue( token.getNamespaceIndex( "http://test1.org/") == 0 ) + self.assertTrue( token.getNamespaceIndex( "http://test2.org/") == 1 ) + self.assertTrue( token.getNamespaceIndex( "http://test5.org/") == 4 ) + self.assertTrue( token.getNamespaceIndex( "http://test9.org/") == 8 ) + self.assertTrue( token.getNamespaceIndex( "http://testX.org/") == -1 ) + self.assertTrue( token.hasNamespaceURI( "http://test1.org/") != False ) + self.assertTrue( token.hasNamespaceURI( "http://test2.org/") != False ) + self.assertTrue( token.hasNamespaceURI( "http://test5.org/") != False ) + self.assertTrue( token.hasNamespaceURI( "http://test9.org/") != False ) + self.assertTrue( token.hasNamespaceURI( "http://testX.org/") == False ) + self.assertTrue( token.getNamespaceIndexByPrefix( "test1") == 0 ) + self.assertTrue( token.getNamespaceIndexByPrefix( "test5") == 4 ) + self.assertTrue( token.getNamespaceIndexByPrefix( "test9") == 8 ) + self.assertTrue( token.getNamespaceIndexByPrefix( "testX") == -1 ) + self.assertTrue( token.hasNamespacePrefix( "test1") != False ) + self.assertTrue( token.hasNamespacePrefix( "test5") != False ) + self.assertTrue( token.hasNamespacePrefix( "test9") != False ) + self.assertTrue( token.hasNamespacePrefix( "testX") == False ) + self.assertTrue( token.hasNamespaceNS( "http://test1.org/", "test1") != False ) + self.assertTrue( token.hasNamespaceNS( "http://test5.org/", "test5") != False ) + self.assertTrue( token.hasNamespaceNS( "http://test9.org/", "test9") != False ) + self.assertTrue( token.hasNamespaceNS( "http://testX.org/", "testX") == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -347,33 +347,33 @@ def test_XMLToken_namespace_remove(self): token.addNamespace( "http://test3.org/", "test3") token.addNamespace( "http://test4.org/", "test4") token.addNamespace( "http://test5.org/", "test5") - self.assert_( token.getNamespacesLength() == 5 ) + self.assertTrue( token.getNamespacesLength() == 5 ) token.removeNamespace(4) - self.assert_( token.getNamespacesLength() == 4 ) + self.assertTrue( token.getNamespacesLength() == 4 ) token.removeNamespace(3) - self.assert_( token.getNamespacesLength() == 3 ) + self.assertTrue( token.getNamespacesLength() == 3 ) token.removeNamespace(2) - self.assert_( token.getNamespacesLength() == 2 ) + self.assertTrue( token.getNamespacesLength() == 2 ) token.removeNamespace(1) - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) token.addNamespace( "http://test1.org/", "test1") token.addNamespace( "http://test2.org/", "test2") token.addNamespace( "http://test3.org/", "test3") token.addNamespace( "http://test4.org/", "test4") token.addNamespace( "http://test5.org/", "test5") - self.assert_( token.getNamespacesLength() == 5 ) + self.assertTrue( token.getNamespacesLength() == 5 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 4 ) + self.assertTrue( token.getNamespacesLength() == 4 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 3 ) + self.assertTrue( token.getNamespacesLength() == 3 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 2 ) + self.assertTrue( token.getNamespacesLength() == 2 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) token.removeNamespace(0) - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -388,49 +388,49 @@ def test_XMLToken_namespace_remove_by_prefix(self): token.addNamespace( "http://test3.org/", "test3") token.addNamespace( "http://test4.org/", "test4") token.addNamespace( "http://test5.org/", "test5") - self.assert_( token.getNamespacesLength() == 5 ) + self.assertTrue( token.getNamespacesLength() == 5 ) token.removeNamespace( "test1") - self.assert_( token.getNamespacesLength() == 4 ) + self.assertTrue( token.getNamespacesLength() == 4 ) token.removeNamespace( "test2") - self.assert_( token.getNamespacesLength() == 3 ) + self.assertTrue( token.getNamespacesLength() == 3 ) token.removeNamespace( "test3") - self.assert_( token.getNamespacesLength() == 2 ) + self.assertTrue( token.getNamespacesLength() == 2 ) token.removeNamespace( "test4") - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) token.removeNamespace( "test5") - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) token.addNamespace( "http://test1.org/", "test1") token.addNamespace( "http://test2.org/", "test2") token.addNamespace( "http://test3.org/", "test3") token.addNamespace( "http://test4.org/", "test4") token.addNamespace( "http://test5.org/", "test5") - self.assert_( token.getNamespacesLength() == 5 ) + self.assertTrue( token.getNamespacesLength() == 5 ) token.removeNamespace( "test5") - self.assert_( token.getNamespacesLength() == 4 ) + self.assertTrue( token.getNamespacesLength() == 4 ) token.removeNamespace( "test4") - self.assert_( token.getNamespacesLength() == 3 ) + self.assertTrue( token.getNamespacesLength() == 3 ) token.removeNamespace( "test3") - self.assert_( token.getNamespacesLength() == 2 ) + self.assertTrue( token.getNamespacesLength() == 2 ) token.removeNamespace( "test2") - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) token.removeNamespace( "test1") - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) token.addNamespace( "http://test1.org/", "test1") token.addNamespace( "http://test2.org/", "test2") token.addNamespace( "http://test3.org/", "test3") token.addNamespace( "http://test4.org/", "test4") token.addNamespace( "http://test5.org/", "test5") - self.assert_( token.getNamespacesLength() == 5 ) + self.assertTrue( token.getNamespacesLength() == 5 ) token.removeNamespace( "test3") - self.assert_( token.getNamespacesLength() == 4 ) + self.assertTrue( token.getNamespacesLength() == 4 ) token.removeNamespace( "test1") - self.assert_( token.getNamespacesLength() == 3 ) + self.assertTrue( token.getNamespacesLength() == 3 ) token.removeNamespace( "test4") - self.assert_( token.getNamespacesLength() == 2 ) + self.assertTrue( token.getNamespacesLength() == 2 ) token.removeNamespace( "test5") - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) token.removeNamespace( "test2") - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -441,28 +441,28 @@ def test_XMLToken_namespace_set_clear(self): attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) ns = libsbml.XMLNamespaces() - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) ns.add( "http://test1.org/", "test1") ns.add( "http://test2.org/", "test2") ns.add( "http://test3.org/", "test3") ns.add( "http://test4.org/", "test4") ns.add( "http://test5.org/", "test5") token.setNamespaces(ns) - self.assert_( token.getNamespacesLength() == 5 ) - self.assert_( token.isNamespacesEmpty() == False ) - self.assert_( ( "test1" != token.getNamespacePrefix(0) ) == False ) - self.assert_( ( "test2" != token.getNamespacePrefix(1) ) == False ) - self.assert_( ( "test3" != token.getNamespacePrefix(2) ) == False ) - self.assert_( ( "test4" != token.getNamespacePrefix(3) ) == False ) - self.assert_( ( "test5" != token.getNamespacePrefix(4) ) == False ) - self.assert_( ( "http://test1.org/" != token.getNamespaceURI(0) ) == False ) - self.assert_( ( "http://test2.org/" != token.getNamespaceURI(1) ) == False ) - self.assert_( ( "http://test3.org/" != token.getNamespaceURI(2) ) == False ) - self.assert_( ( "http://test4.org/" != token.getNamespaceURI(3) ) == False ) - self.assert_( ( "http://test5.org/" != token.getNamespaceURI(4) ) == False ) + self.assertTrue( token.getNamespacesLength() == 5 ) + self.assertTrue( token.isNamespacesEmpty() == False ) + self.assertTrue( ( "test1" != token.getNamespacePrefix(0) ) == False ) + self.assertTrue( ( "test2" != token.getNamespacePrefix(1) ) == False ) + self.assertTrue( ( "test3" != token.getNamespacePrefix(2) ) == False ) + self.assertTrue( ( "test4" != token.getNamespacePrefix(3) ) == False ) + self.assertTrue( ( "test5" != token.getNamespacePrefix(4) ) == False ) + self.assertTrue( ( "http://test1.org/" != token.getNamespaceURI(0) ) == False ) + self.assertTrue( ( "http://test2.org/" != token.getNamespaceURI(1) ) == False ) + self.assertTrue( ( "http://test3.org/" != token.getNamespaceURI(2) ) == False ) + self.assertTrue( ( "http://test4.org/" != token.getNamespaceURI(3) ) == False ) + self.assertTrue( ( "http://test5.org/" != token.getNamespaceURI(4) ) == False ) token.clearNamespaces() - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( token.getNamespacesLength() == 0 ) _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList diff --git a/src/bindings/python/test/xml/TestXMLToken_newSetters.py b/src/bindings/python/test/xml/TestXMLToken_newSetters.py index e1683377d6..e6e45f16f7 100644 --- a/src/bindings/python/test/xml/TestXMLToken_newSetters.py +++ b/src/bindings/python/test/xml/TestXMLToken_newSetters.py @@ -43,27 +43,27 @@ def test_XMLToken_newSetters_addAttributes1(self): token = libsbml.XMLToken(triple,attr) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") i = token.addAttr( "name1", "val1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributesLength() == 1 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name1" != token.getAttrName(0) ) == False ) - self.assert_( ( "val1" != token.getAttrValue(0) ) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributesLength() == 1 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name1" != token.getAttrName(0) ) == False ) + self.assertTrue( ( "val1" != token.getAttrValue(0) ) == False ) i = token.addAttr( "name2", "val2", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributesLength() == 2 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name2" != token.getAttrName(1) ) == False ) - self.assert_( ( "val2" != token.getAttrValue(1) ) == False ) - self.assert_( ( "http://name1.org/" != token.getAttrURI(1) ) == False ) - self.assert_( ( "p1" != token.getAttrPrefix(1) ) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributesLength() == 2 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name2" != token.getAttrName(1) ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue(1) ) == False ) + self.assertTrue( ( "http://name1.org/" != token.getAttrURI(1) ) == False ) + self.assertTrue( ( "p1" != token.getAttrPrefix(1) ) == False ) i = token.addAttr(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributesLength() == 3 ) - self.assert_( token.isAttributesEmpty() == False ) - self.assert_( ( "name3" != token.getAttrName(2) ) == False ) - self.assert_( ( "val2" != token.getAttrValue(2) ) == False ) - self.assert_( ( "http://name3.org/" != token.getAttrURI(2) ) == False ) - self.assert_( ( "p3" != token.getAttrPrefix(2) ) == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributesLength() == 3 ) + self.assertTrue( token.isAttributesEmpty() == False ) + self.assertTrue( ( "name3" != token.getAttrName(2) ) == False ) + self.assertTrue( ( "val2" != token.getAttrValue(2) ) == False ) + self.assertTrue( ( "http://name3.org/" != token.getAttrURI(2) ) == False ) + self.assertTrue( ( "p3" != token.getAttrPrefix(2) ) == False ) _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -75,17 +75,17 @@ def test_XMLToken_newSetters_addAttributes2(self): token = libsbml.XMLToken(triple) xt2 = libsbml.XMLTriple("name3", "http://name3.org/", "p3") i = token.addAttr( "name1", "val1") - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.getAttributesLength() == 0 ) - self.assert_( token.isAttributesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.getAttributesLength() == 0 ) + self.assertTrue( token.isAttributesEmpty() == True ) i = token.addAttr( "name2", "val2", "http://name1.org/", "p1") - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.getAttributesLength() == 0 ) - self.assert_( token.isAttributesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.getAttributesLength() == 0 ) + self.assertTrue( token.isAttributesEmpty() == True ) i = token.addAttr(xt2, "val2") - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.getAttributesLength() == 0 ) - self.assert_( token.isAttributesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.getAttributesLength() == 0 ) + self.assertTrue( token.isAttributesEmpty() == True ) _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList @@ -95,12 +95,12 @@ def test_XMLToken_newSetters_addNamespaces1(self): triple = libsbml.XMLTriple("test","","") attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) i = token.addNamespace( "http://test1.org/", "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 1 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 1 ) + self.assertTrue( token.isNamespacesEmpty() == False ) _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList @@ -109,12 +109,12 @@ def test_XMLToken_newSetters_addNamespaces1(self): def test_XMLToken_newSetters_addNamespaces2(self): triple = libsbml.XMLTriple("test","","") token = libsbml.XMLToken(triple) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) i = token.addNamespace( "http://test1.org/", "test1") - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass @@ -127,11 +127,11 @@ def test_XMLToken_newSetters_clearAttributes1(self): xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1") nattr.add(xt1, "val1") i = token.setAttributes(nattr) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isAttributesEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isAttributesEmpty() == False ) i = token.clearAttributes() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isAttributesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isAttributesEmpty() == True ) _dummyList = [ nattr ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -144,17 +144,17 @@ def test_XMLToken_newSetters_clearNamespaces1(self): attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) ns = libsbml.XMLNamespaces() - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) ns.add( "http://test1.org/", "test1") i = token.setNamespaces(ns) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 1 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 1 ) + self.assertTrue( token.isNamespacesEmpty() == False ) i = token.clearNamespaces() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList @@ -171,28 +171,28 @@ def test_XMLToken_newSetters_removeAttributes1(self): i = token.addAttr( "name2", "val2", "http://name1.org/", "p1") i = token.addAttr(xt2, "val2") i = token.addAttr( "name4", "val4") - self.assert_( token.getAttributes().getLength() == 4 ) + self.assertTrue( token.getAttributes().getLength() == 4 ) i = token.removeAttr(7) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = token.removeAttr( "name7") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = token.removeAttr( "name7", "namespaces7") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) i = token.removeAttr(xt1) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( token.getAttributes().getLength() == 4 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( token.getAttributes().getLength() == 4 ) i = token.removeAttr(3) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributes().getLength() == 3 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributes().getLength() == 3 ) i = token.removeAttr( "name1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributes().getLength() == 2 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributes().getLength() == 2 ) i = token.removeAttr( "name2", "http://name1.org/") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributes().getLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributes().getLength() == 1 ) i = token.removeAttr(xt2) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getAttributes().getLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getAttributes().getLength() == 0 ) _dummyList = [ xt1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ xt2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -205,13 +205,13 @@ def test_XMLToken_newSetters_removeNamespaces(self): attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) token.addNamespace( "http://test1.org/", "test1") - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) i = token.removeNamespace(4) - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( token.getNamespacesLength() == 1 ) i = token.removeNamespace(0) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 0 ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -222,13 +222,13 @@ def test_XMLToken_newSetters_removeNamespaces1(self): attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) token.addNamespace( "http://test1.org/", "test1") - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( token.getNamespacesLength() == 1 ) i = token.removeNamespace( "test2") - self.assert_( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) - self.assert_( token.getNamespacesLength() == 1 ) + self.assertTrue( i == libsbml.LIBSBML_INDEX_EXCEEDS_SIZE ) + self.assertTrue( token.getNamespacesLength() == 1 ) i = token.removeNamespace( "test1") - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 0 ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 0 ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList @@ -242,8 +242,8 @@ def test_XMLToken_newSetters_setAttributes1(self): xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1") nattr.add(xt1, "val1") i = token.setAttributes(nattr) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isAttributesEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isAttributesEmpty() == False ) _dummyList = [ nattr ]; _dummyList[:] = []; del _dummyList _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList @@ -258,8 +258,8 @@ def test_XMLToken_newSetters_setAttributes2(self): xt1 = libsbml.XMLTriple("name1", "http://name1.org/", "p1") nattr.add(xt1, "val1") i = token.setAttributes(nattr) - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.isAttributesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.isAttributesEmpty() == True ) _dummyList = [ nattr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList @@ -268,24 +268,24 @@ def test_XMLToken_newSetters_setAttributes2(self): def test_XMLToken_newSetters_setEOF(self): token = libsbml.XMLToken() - self.assert_( token.isEnd() == False ) + self.assertTrue( token.isEnd() == False ) i = token.setEOF() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isEnd() == False ) - self.assert_( token.isStart() == False ) - self.assert_( token.isText() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isEnd() == False ) + self.assertTrue( token.isStart() == False ) + self.assertTrue( token.isText() == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass def test_XMLToken_newSetters_setEnd(self): token = libsbml.XMLToken() - self.assert_( token.isEnd() == False ) + self.assertTrue( token.isEnd() == False ) i = token.setEnd() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isEnd() == True ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isEnd() == True ) i = token.unsetEnd() - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.isEnd() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.isEnd() == False ) _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass @@ -294,13 +294,13 @@ def test_XMLToken_newSetters_setNamespaces1(self): attr = libsbml.XMLAttributes() token = libsbml.XMLToken(triple,attr) ns = libsbml.XMLNamespaces() - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) ns.add( "http://test1.org/", "test1") i = token.setNamespaces(ns) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_( token.getNamespacesLength() == 1 ) - self.assert_( token.isNamespacesEmpty() == False ) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue( token.getNamespacesLength() == 1 ) + self.assertTrue( token.isNamespacesEmpty() == False ) _dummyList = [ attr ]; _dummyList[:] = []; del _dummyList _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList @@ -311,13 +311,13 @@ def test_XMLToken_newSetters_setNamespaces2(self): triple = libsbml.XMLTriple("test","","") token = libsbml.XMLToken(triple) ns = libsbml.XMLNamespaces() - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) ns.add( "http://test1.org/", "test1") i = token.setNamespaces(ns) - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) - self.assert_( token.getNamespacesLength() == 0 ) - self.assert_( token.isNamespacesEmpty() == True ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( token.getNamespacesLength() == 0 ) + self.assertTrue( token.isNamespacesEmpty() == True ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList _dummyList = [ ns ]; _dummyList[:] = []; del _dummyList @@ -327,8 +327,8 @@ def test_XMLToken_newSetters_setTriple1(self): triple = libsbml.XMLTriple("test","","") token = libsbml.XMLToken() i = token.setTriple(triple) - self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) - self.assert_(( "test" == token.getName() )) + self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) + self.assertTrue(( "test" == token.getName() )) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass @@ -337,7 +337,7 @@ def test_XMLToken_newSetters_setTriple2(self): triple = libsbml.XMLTriple("test","","") token = libsbml.XMLToken("This is text") i = token.setTriple(triple) - self.assert_( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) + self.assertTrue( i == libsbml.LIBSBML_INVALID_XML_OPERATION ) _dummyList = [ triple ]; _dummyList[:] = []; del _dummyList _dummyList = [ token ]; _dummyList[:] = []; del _dummyList pass diff --git a/src/bindings/python/test/xml/TestXMLTriple.py b/src/bindings/python/test/xml/TestXMLTriple.py index 6fee89bcad..b393526066 100644 --- a/src/bindings/python/test/xml/TestXMLTriple.py +++ b/src/bindings/python/test/xml/TestXMLTriple.py @@ -39,22 +39,22 @@ class TestXMLTriple(unittest.TestCase): def test_XMLTriple_create(self): t = libsbml.XMLTriple() - self.assert_( t != None ) - self.assert_( t.isEmpty() != False ) + self.assertTrue( t != None ) + self.assertTrue( t.isEmpty() != False ) _dummyList = [ t ]; _dummyList[:] = []; del _dummyList t = libsbml.XMLTriple("attr", "uri", "prefix") - self.assert_( ( "attr" != t.getName() ) == False ) - self.assert_( ( "uri" != t.getURI() ) == False ) - self.assert_( ( "prefix" != t.getPrefix() ) == False ) - self.assert_( ( "prefix:attr" != t.getPrefixedName() ) == False ) - self.assert_( t.isEmpty() == False ) + self.assertTrue( ( "attr" != t.getName() ) == False ) + self.assertTrue( ( "uri" != t.getURI() ) == False ) + self.assertTrue( ( "prefix" != t.getPrefix() ) == False ) + self.assertTrue( ( "prefix:attr" != t.getPrefixedName() ) == False ) + self.assertTrue( t.isEmpty() == False ) _dummyList = [ t ]; _dummyList[:] = []; del _dummyList t = libsbml.XMLTriple("attr", "uri", "") - self.assert_( ( "attr" != t.getName() ) == False ) - self.assert_( ( "uri" != t.getURI() ) == False ) - self.assert_( t.getPrefix() == "" ) - self.assert_( ( "attr" != t.getPrefixedName() ) == False ) - self.assert_( t.isEmpty() == False ) + self.assertTrue( ( "attr" != t.getName() ) == False ) + self.assertTrue( ( "uri" != t.getURI() ) == False ) + self.assertTrue( t.getPrefix() == "" ) + self.assertTrue( ( "attr" != t.getPrefixedName() ) == False ) + self.assertTrue( t.isEmpty() == False ) _dummyList = [ t ]; _dummyList[:] = []; del _dummyList pass