Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1688644166.586211/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found warning: Macro expanded in comment on line 62: %{name}-rhbz_2128592.patch sh: line 1: /usr/bin/perl: No such file or directory sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/libsbml-5.19.0-26.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1688644166.586211/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found warning: Macro expanded in comment on line 62: %{name}-rhbz_2128592.patch sh: line 1: /usr/bin/perl: No such file or directory sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/libsbml-5.19.0-26.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1688644166.586211/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found warning: Macro expanded in comment on line 62: %{name}-rhbz_2128592.patch Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.v3muOF + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.19.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.19.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.19.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/libsbml-use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /builddir/build/SOURCES/libsbml-fix_install_libpaths.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /builddir/build/SOURCES/time-clock.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /builddir/build/SOURCES/libsbml-fix-jsfile-globs.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /builddir/build/SOURCES/libsbml-drop-formatter-import.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /builddir/build/SOURCES/b12b7f9372424f5271a838c95605d9946c7ea1fb.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf examples/python/append_to_note.py + unzip -n /builddir/build/SOURCES/libSBML-5.19.0-render-src.zip Archive: /builddir/build/SOURCES/libSBML-5.19.0-render-src.zip + sed -r -i s/DOXYGEN_MAX_VERSION=1.8.11/DOXYGEN_MAX_VERSION=2.0.0/ configure + find . -type f -name '*.py' -exec /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 '{}' ';' /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or 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'/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory /usr/bin/python3: can't open file '/usr/lib/rpm/redhat/pathfix.py': [Errno 2] No such file or directory + python3 -m lib2to3 -f print -w docs/src/filters/ RefactoringTool: Refactored docs/src/filters/doc-filter-c.py RefactoringTool: Refactored docs/src/filters/doc-filter-csharp.py RefactoringTool: Refactored docs/src/filters/doc-filter-python.py RefactoringTool: Files that were modified: RefactoringTool: docs/src/filters/doc-filter-c.py RefactoringTool: docs/src/filters/doc-filter-csharp.py RefactoringTool: docs/src/filters/doc-filter-python.py --- docs/src/filters/doc-filter-c.py (original) +++ docs/src/filters/doc-filter-c.py (refactored) @@ -92,7 +92,7 @@ global libsbml_classes if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) # Check if the environment variable LIBSBML_CLASSES_LIST is set. --- docs/src/filters/doc-filter-csharp.py (original) +++ docs/src/filters/doc-filter-csharp.py (refactored) @@ -67,7 +67,7 @@ """ if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) istream = open(args[1], 'r') --- docs/src/filters/doc-filter-python.py (original) +++ docs/src/filters/doc-filter-python.py (refactored) @@ -284,7 +284,7 @@ global libsbml_enums if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) # Check if the environment variable LIBSBML_CLASSES_LIST is set. + python3 -m lib2to3 -f next -w docs RefactoringTool: Refactored docs/src/utilities/generate-pkg-stylesheet.py RefactoringTool: Files that were modified: --- docs/src/utilities/generate-pkg-stylesheet.py (original) +++ docs/src/utilities/generate-pkg-stylesheet.py (refactored) @@ -168,7 +168,7 @@ # Next, read the source dir to find out the L3 packages available, and # extract the names of the libSBML object classes in each package. known_pkgs = [entry[0] for entry in color_table] - top_root, top_level_dirs, top_level_files = os.walk(src_dir).next() + top_root, top_level_dirs, top_level_files = next(os.walk(src_dir)) found_pkgs = [pkg for pkg in known_pkgs if pkg in top_level_dirs] # Now generate CSS styling that uses attribute selectors specialized to RefactoringTool: docs/src/utilities/generate-pkg-stylesheet.py + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ciC2Rw + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + mkdir -p build + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + export LDFLAGS + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + export LDFLAGS ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.9 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.9.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON -- The C compiler identification is GNU 10.3.1 -- The CXX compiler identification is GNU 10.3.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.0.2") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Found PkgConfig: /usr/bin/pkgconf (found version "1.8.0") -- Checking for module 'minizip' -- Found minizip, version 1.2.11 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.9.9") -- Found Perl: /usr/bin/perl (found version "5.34.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.34.0") -- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.9") -- Found Ruby: /usr/bin/ruby (found suitable version "3.0.3", minimum required is "1.8.0") `did_you_mean' was not loaded. -- ---------------------------------------------------------------------- libSBML version 5.19.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'resalloc-4f58277d-ad2d-4370-a886-9b860adde7e9' host type = Linux host operating system = Linux 4.19.90-vhulk2103.1.0.h990.eulerosv2r9.aarch64 host CPU architecture = aarch64 General build flags: CC = /usr/bin/cc CXX = /usr/bin/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.0.2) -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.19.0-Source/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.19.0-Source -B/builddir/build/BUILD/libSBML-5.19.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.19.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.19.0-Source/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro 'COMP_CREATE_NS' 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro 'COMP_CREATE_NS' 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro 'COMP_CREATE_NS' 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro 'COMP_CREATE_NS' 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro 'COMP_CREATE_NS' 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro 'COMP_CREATE_NS' 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro 'COMP_CREATE_NS' 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro 'COMP_CREATE_NS' 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro 'COMP_CREATE_NS' 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro 'COMP_CREATE_NS' 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro 'COMP_CREATE_NS' 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro 'COMP_CREATE_NS' 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro 'COMP_CREATE_NS' 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro 'COMP_CREATE_NS' 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro 'COMP_CREATE_NS' 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro 'COMP_CREATE_NS' 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.19.0-Source --master /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:816: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:864: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:344: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:328: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:389: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:373: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:448: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:444: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:486: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:481: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:522: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:517: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:559: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:554: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:537: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:533: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:575: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:612: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:684: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:644: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:687: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:648: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:915: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:900: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1146: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1130: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1266: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1250: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1314: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1298: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1362: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1346: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1410: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1394: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c 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src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro 'COMP_CREATE_NS' 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro 'COMP_CREATE_NS' 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro 'COMP_CREATE_NS' 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro 'COMP_CREATE_NS' 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/libsbml.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro 'COMP_CREATE_NS' 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro 'COMP_CREATE_NS' 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro 'COMP_CREATE_NS' 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro 'COMP_CREATE_NS' 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro 'COMP_CREATE_NS' 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro 'COMP_CREATE_NS' 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro 'COMP_CREATE_NS' 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro 'COMP_CREATE_NS' 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro 'COMP_CREATE_NS' 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro 'COMP_CREATE_NS' 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro 'COMP_CREATE_NS' 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro 'COMP_CREATE_NS' 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro 'COMP_CREATE_NS' 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro 'COMP_CREATE_NS' 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro 'COMP_CREATE_NS' 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro 'COMP_CREATE_NS' 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro 'COMP_CREATE_NS' 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro 'COMP_CREATE_NS' 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Swig Python source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.19.0-Source --master /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.19.0-Source/src > /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" -DVERSION="5.19.0" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:202:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 202 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:838:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 838 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1103:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1283:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1283 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1490:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1490 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:948:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 948 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:985:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 985 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1022:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1022 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1118:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1118 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1126:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1126 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1134:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1134 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1142 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro 'COMP_CREATE_NS' 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1181:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1181 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1105:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1105 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1201:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1201 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1103:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1199:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1199 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:217:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 217 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:232:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 232 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:247:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 247 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:932:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 932 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro 'COMP_CREATE_NS' 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1379:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1498:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1498 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:202:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 202 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:838:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 838 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1103:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1283:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1283 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1490:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1490 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro 'GROUPS_CREATE_NS' 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:110, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:948:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 948 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:985:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 985 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1022:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1022 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1118:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1118 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1126:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1126 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1134:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1134 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1142 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:131, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1181:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1181 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro 'GROUPS_CREATE_NS' 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1105:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1105 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1201:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1201 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro 'GROUPS_CREATE_NS' 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro 'GROUPS_CREATE_NS' 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:94, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1103:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1199:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1199 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:217:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 217 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:232:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 232 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:247:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 247 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:932:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 932 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro 'GROUPS_CREATE_NS' 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro 'GROUPS_CREATE_NS' 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:139, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1379:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1498:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1498 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro 'GROUPS_CREATE_NS' 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro 'GROUPS_CREATE_NS' 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro 'GROUPS_CREATE_NS' 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro 'GROUPS_CREATE_NS' 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:105, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro 'GROUPS_CREATE_NS' 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro 'GROUPS_CREATE_NS' 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions 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src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro 'MULTI_CREATE_NS' 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro 'MULTI_CREATE_NS' 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro 'MULTI_CREATE_NS' 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro 'MULTI_CREATE_NS' 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro 'MULTI_CREATE_NS' 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro 'MULTI_CREATE_NS' 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro 'MULTI_CREATE_NS' 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro 'MULTI_CREATE_NS' 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro 'MULTI_CREATE_NS' 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro 'MULTI_CREATE_NS' 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro 'MULTI_CREATE_NS' 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro 'MULTI_CREATE_NS' 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro 'MULTI_CREATE_NS' 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro 'MULTI_CREATE_NS' 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro 'MULTI_CREATE_NS' 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro 'MULTI_CREATE_NS' 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro 'MULTI_CREATE_NS' 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro 'MULTI_CREATE_NS' 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro 'MULTI_CREATE_NS' 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro 'MULTI_CREATE_NS' 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro 'MULTI_CREATE_NS' 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro 'MULTI_CREATE_NS' 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro 'MULTI_CREATE_NS' 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro 'MULTI_CREATE_NS' 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro 'MULTI_CREATE_NS' 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro 'MULTI_CREATE_NS' 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro 'MULTI_CREATE_NS' 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro 'MULTI_CREATE_NS' 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro 'MULTI_CREATE_NS' 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro 'MULTI_CREATE_NS' 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro 'MULTI_CREATE_NS' 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro 'MULTI_CREATE_NS' 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro 'MULTI_CREATE_NS' 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro 'MULTI_CREATE_NS' 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro 'MULTI_CREATE_NS' 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro 'MULTI_CREATE_NS' 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro 'MULTI_CREATE_NS' 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro 'MULTI_CREATE_NS' 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro 'MULTI_CREATE_NS' 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro 'MULTI_CREATE_NS' 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro 'MULTI_CREATE_NS' 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro 'MULTI_CREATE_NS' 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro 'MULTI_CREATE_NS' 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro 'MULTI_CREATE_NS' 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro 'MULTI_CREATE_NS' 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro 'MULTI_CREATE_NS' 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro 'MULTI_CREATE_NS' 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro 'MULTI_CREATE_NS' 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro 'MULTI_CREATE_NS' 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro 'MULTI_CREATE_NS' 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro 'MULTI_CREATE_NS' 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro 'MULTI_CREATE_NS' 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro 'MULTI_CREATE_NS' 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro 'MULTI_CREATE_NS' 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro 'MULTI_CREATE_NS' 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro 'MULTI_CREATE_NS' 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro 'MULTI_CREATE_NS' 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro 'MULTI_CREATE_NS' 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro 'MULTI_CREATE_NS' 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro 'MULTI_CREATE_NS' 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro 'MULTI_CREATE_NS' 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro 'MULTI_CREATE_NS' 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro 'MULTI_CREATE_NS' 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro 'MULTI_CREATE_NS' 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro 'MULTI_CREATE_NS' 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro 'MULTI_CREATE_NS' 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro 'MULTI_CREATE_NS' 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro 'MULTI_CREATE_NS' 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro 'MULTI_CREATE_NS' 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro 'MULTI_CREATE_NS' 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro 'MULTI_CREATE_NS' 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS 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/builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro 'QUAL_CREATE_NS' 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro 'QUAL_CREATE_NS' 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro 'QUAL_CREATE_NS' 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro 'QUAL_CREATE_NS' 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro 'QUAL_CREATE_NS' 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro 'QUAL_CREATE_NS' 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro 'QUAL_CREATE_NS' 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro 'QUAL_CREATE_NS' 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro 'QUAL_CREATE_NS' 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro 'QUAL_CREATE_NS' 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro 'QUAL_CREATE_NS' 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro 'QUAL_CREATE_NS' 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro 'QUAL_CREATE_NS' 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro 'QUAL_CREATE_NS' 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro 'QUAL_CREATE_NS' 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:107, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro 'QUAL_CREATE_NS' 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro 'RENDER_CREATE_NS' 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro 'QUAL_CREATE_NS' 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro 'RENDER_CREATE_NS' 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro 'QUAL_CREATE_NS' 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:91, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro 'QUAL_CREATE_NS' 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro 'QUAL_CREATE_NS' 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro 'QUAL_CREATE_NS' 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro 'QUAL_CREATE_NS' 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro 'RENDER_CREATE_NS' 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro 'RENDER_CREATE_NS' 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'virtual void GraphicalPrimitive1D::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1167:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 1167 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro 'RENDER_CREATE_NS' 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:535:3: note: in expansion of macro 'RENDER_CREATE_NS' 535 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:561:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 561 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1315:3: note: in expansion of macro 'RENDER_CREATE_NS' 1315 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1317:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1317 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro 'RENDER_CREATE_NS' 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro 'RENDER_CREATE_NS' 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro 'RENDER_CREATE_NS' 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro 'RENDER_CREATE_NS' 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro 'RENDER_CREATE_NS' 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro 'RENDER_CREATE_NS' 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro 'RENDER_CREATE_NS' 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro 'RENDER_CREATE_NS' 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro 'RENDER_CREATE_NS' 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro 'RENDER_CREATE_NS' 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro 'RENDER_CREATE_NS' 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro 'RENDER_CREATE_NS' 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro 'RENDER_CREATE_NS' 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro 'RENDER_CREATE_NS' 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro 'RENDER_CREATE_NS' 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro 'RENDER_CREATE_NS' 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:966:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 966 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro 'RENDER_CREATE_NS' 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro 'RENDER_CREATE_NS' 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro 'RENDER_CREATE_NS' 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro 'RENDER_CREATE_NS' 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro 'RENDER_CREATE_NS' 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro 'RENDER_CREATE_NS' 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro 'RENDER_CREATE_NS' 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro 'RENDER_CREATE_NS' 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro 'RENDER_CREATE_NS' 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro 'RENDER_CREATE_NS' 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:916:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 916 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro 'RENDER_CREATE_NS' 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro 'RENDER_CREATE_NS' 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro 'RENDER_CREATE_NS' 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro 'RENDER_CREATE_NS' 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro 'RENDER_CREATE_NS' 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro 'RENDER_CREATE_NS' 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:535:3: note: in expansion of macro 'RENDER_CREATE_NS' 535 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:561:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 561 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1315:3: note: in expansion of macro 'RENDER_CREATE_NS' 1315 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1317:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1317 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro 'RENDER_CREATE_NS' 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro 'RENDER_CREATE_NS' 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro 'RENDER_CREATE_NS' 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro 'RENDER_CREATE_NS' 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro 'RENDER_CREATE_NS' 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro 'RENDER_CREATE_NS' 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro 'RENDER_CREATE_NS' 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro 'RENDER_CREATE_NS' 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro 'RENDER_CREATE_NS' 405 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro 'RENDER_CREATE_NS' 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro 'RENDER_CREATE_NS' 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro 'RENDER_CREATE_NS' 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro 'RENDER_CREATE_NS' 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro 'RENDER_CREATE_NS' 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro 'RENDER_CREATE_NS' 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual void ListOfGlobalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:966:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 966 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro 'RENDER_CREATE_NS' 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro 'RENDER_CREATE_NS' 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro 'RENDER_CREATE_NS' 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro 'RENDER_CREATE_NS' 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro 'RENDER_CREATE_NS' 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro 'RENDER_CREATE_NS' 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro 'RENDER_CREATE_NS' 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro 'RENDER_CREATE_NS' 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro 'RENDER_CREATE_NS' 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro 'RENDER_CREATE_NS' 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro 'RENDER_CREATE_NS' 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro 'RENDER_CREATE_NS' 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro 'RENDER_CREATE_NS' 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro 'RENDER_CREATE_NS' 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro 'RENDER_CREATE_NS' 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro 'RENDER_CREATE_NS' 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro 'RENDER_CREATE_NS' 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro 'RENDER_CREATE_NS' 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro 'RENDER_CREATE_NS' 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro 'RENDER_CREATE_NS' 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro 'RENDER_CREATE_NS' 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro 'RENDER_CREATE_NS' 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual void ListOfLocalRenderInformation::readAttributes(const XMLAttributes&, const ExpectedAttributes&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:916:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 916 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro 'RENDER_CREATE_NS' 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro 'RENDER_CREATE_NS' 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro 'RENDER_CREATE_NS' 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro 'RENDER_CREATE_NS' 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro 'RENDER_CREATE_NS' 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro 'RENDER_CREATE_NS' 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro 'RENDER_CREATE_NS' 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro 'RENDER_CREATE_NS' 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro 'RENDER_CREATE_NS' 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro 'RENDER_CREATE_NS' 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro 'RENDER_CREATE_NS' 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro 'RENDER_CREATE_NS' 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro 'RENDER_CREATE_NS' 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro 'RENDER_CREATE_NS' 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro 'RENDER_CREATE_NS' 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro 'RENDER_CREATE_NS' 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro 'RENDER_CREATE_NS' 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/ConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro 'RENDER_CREATE_NS' 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro 'RENDER_CREATE_NS' 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro 'RENDER_CREATE_NS' 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro 'RENDER_CREATE_NS' 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro 'RENDER_CREATE_NS' 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro 'RENDER_CREATE_NS' 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro 'RENDER_CREATE_NS' 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro 'RENDER_CREATE_NS' 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro 'RENDER_CREATE_NS' 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints 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CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro 'RENDER_CREATE_NS' 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro 'RENDER_CREATE_NS' 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/RegisterConverters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function 'void Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 6 and 23 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 4 and 12 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:888, from /usr/include/c++/10.3.1/cstdio:42, from /usr/include/c++/10.3.1/ext/string_conversions.h:43, from /usr/include/c++/10.3.1/bits/basic_string.h:6545, from /usr/include/c++/10.3.1/string:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:71:35: note: '__builtin___snprintf_chk' output between 3 and 11 bytes into a destination of size 10 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:487:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:486:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:487:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:486:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 410 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 426 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:534:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 534 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:550:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 550 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1145:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1145 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1161:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1161 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:885:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 885 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:901:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 901 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2124:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2124 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:893:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 893 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:909:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 909 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2406:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2406 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1298:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1298 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1314:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1314 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:410:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 410 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:426:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 426 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1370:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1370 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1386:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1386 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:534:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 534 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:550:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 550 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1280:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1280 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1296:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1296 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2076:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2076 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2092:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2092 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:885:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 885 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:901:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 901 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2124:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2124 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:837:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 837 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:853:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 853 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1145:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1145 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1161:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1161 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o -MF CMakeFiles/sbml.dir/sbml/Delay.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:893:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 893 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:909:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 909 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -MF CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1298:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1298 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1314:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1314 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Event.cpp.o -MF CMakeFiles/sbml.dir/sbml/Event.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2406:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2406 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1370:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1370 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1386:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1386 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1280:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1280 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1296:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1296 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2076:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2076 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2092:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2092 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7433:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7433 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7449:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7449 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:837:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 837 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:853:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 853 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:741:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 741 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:757:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 757 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:532:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 532 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:548:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 548 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7433:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7433 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7449:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7449 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:741:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 741 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:757:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 757 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/Reaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2711 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1917:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1917 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1933:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1933 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1949:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1949 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1965:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1965 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1981:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1981 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1997:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1997 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:532:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 532 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:548:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 548 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2711:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2711 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2312:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2312 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2328:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2328 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2344:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2344 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1917:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1917 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1933:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1933 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1949:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1949 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1965:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1965 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1981:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1981 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1997:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1997 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2312:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2312 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2328:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2328 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2344:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2344 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2008 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2024 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2683:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2683 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2699:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2699 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:5960:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] 5960 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:5960:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] 5960 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -MF CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:883:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 883 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:899:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 899 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -MF CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o.d -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:647:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 647 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:663:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 663 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -MF CMakeFiles/sbml.dir/sbml/Trigger.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1017 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1033:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1033 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o -MF CMakeFiles/sbml.dir/sbml/Unit.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2672:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2672 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2688:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2688 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2683:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2683 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2699:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2699 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2443:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2443 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2459:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2459 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2008:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2008 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2024:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2024 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:883:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 883 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:899:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 899 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && 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-fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:647:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 647 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:663:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 663 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/CallbackRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/CallbackRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/ElementFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function 'bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:404:18: warning: unused variable 'version' [-Wunused-variable] 404 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function 'void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:424:16: warning: unused variable 'n' [-Wunused-variable] 424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:2174:21: warning: unused variable 'name' [-Wunused-variable] 2174 | const string& name = element1.getName(); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1017:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1017 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1033:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1033 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/MathFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building C object src/CMakeFiles/sbml.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2443:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2443 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2459:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2459 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:424:16: warning: unused variable 'n' [-Wunused-variable] 424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:2174:21: warning: unused variable 'name' [-Wunused-variable] 2174 | const string& name = element1.getName(); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp: In function 'void* zipopen(const char*, const char*, int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp:545:41: error: cannot convert 'uLong*' {aka 'long unsigned int*'} to 'uint32_t*' {aka 'unsigned int*'} 545 | filetime(filenameinzip,&zi.tmz_date,&zi.dosDate); | ^~~~~~~~~~~ | | | uLong* {aka long unsigned int*} /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp:97:64: note: initializing argument 3 of 'long unsigned int filetime(const char*, tm_zip*, uint32_t*)' 97 | unsigned long filetime(const char* f, tm_zip* tmzip, uint32_t* dt); | ~~~~~~~~~~^~ make[2]: *** [src/CMakeFiles/sbml.dir/build.make:5735: src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: *** [CMakeFiles/Makefile2:1531: src/CMakeFiles/sbml.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp: In function 'void* zipopen(const char*, const char*, int)': /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp:545:41: error: cannot convert 'uLong*' {aka 'long unsigned int*'} to 'uint32_t*' {aka 'unsigned int*'} 545 | filetime(filenameinzip,&zi.tmz_date,&zi.dosDate); | ^~~~~~~~~~~ | | | uLong* {aka long unsigned int*} /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zipfstream.cpp:97:64: note: initializing argument 3 of 'long unsigned int filetime(const char*, tm_zip*, uint32_t*)' 97 | unsigned long filetime(const char* f, tm_zip* tmzip, uint32_t* dt); | ~~~~~~~~~~^~ make[2]: *** [src/CMakeFiles/sbml-static.dir/build.make:5735: src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/c++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fexceptions -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: *** [CMakeFiles/Makefile2:1557: src/CMakeFiles/sbml-static.dir/all] Error 2 make: *** [Makefile:169: all] Error 2 error: Bad exit status from /var/tmp/rpm-tmp.ciC2Rw (%build) Macro expanded in comment on line 62: %{name}-rhbz_2128592.patch Bad exit status from /var/tmp/rpm-tmp.ciC2Rw (%build) RPM build errors: Child return code was: 1 EXCEPTION: [Error('Command failed: \n # bash --login -c /usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.9/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.9/site-packages/mockbuild/util.py", line 598, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/libsbml.spec