%global _empty_manifest_terminate_build 0
Name:		python-nextcode-sdk
Version:	2.1.1
Release:	1
Summary:	Python SDK for Genuity Science Services
License:	MIT
URL:		https://www.github.com/wuxi-nextcode/nextcode-python-sdk
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/35/a3/97047f46f529b8ac6de5d46a4a5b30ad81e5b96a425254c0fca2f0a36b4c/nextcode_sdk-2.1.1.tar.gz
BuildArch:	noarch

Requires:	python3-dateutil
Requires:	python3-PyYAML
Requires:	python3-requests
Requires:	python3-hjson
Requires:	python3-boto3
Requires:	python3-pandas
Requires:	python3-ipython
Requires:	python3-termcolor
Requires:	python3-tqdm
Requires:	python3-ipywidgets
Requires:	python3-plotly
Requires:	python3-PyJWT

%description
[![Latest version on
PyPi](https://badge.fury.io/py/nextcode-sdk.svg)](https://badge.fury.io/py/nextcode-sdk)
[![Build Status](https://api.travis-ci.org/wuxi-nextcode/nextcode-python-sdk.svg?branch=master)](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[![codecov](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master/graph/badge.svg)](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[![Supported Python
versions](https://img.shields.io/pypi/pyversions/nextcode-sdk.svg)](https://pypi.org/project/nextcode-sdk/)
[![Code style:
black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
# nextcode Python SDK

Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.

### Installation
```bash
$ pip install nextcode-sdk -U
```

```bash
$ pip install nextcode-sdk[jupyter] -U
```

### Getting started

```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()

```

### Jupyter notebooks

To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.

```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```

Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```

Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100

# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100

# multi-line statement
%%gor 
gor #dbsnp# 
  | top 100

# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp# 
  | top 100

# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp# 
  | top 100

# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar] 
  | top 100

# reference a local variable
num = 10
%%gor
nor [var:myvar] 
  | top $num

```


%package -n python3-nextcode-sdk
Summary:	Python SDK for Genuity Science Services
Provides:	python-nextcode-sdk
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-nextcode-sdk
[![Latest version on
PyPi](https://badge.fury.io/py/nextcode-sdk.svg)](https://badge.fury.io/py/nextcode-sdk)
[![Build Status](https://api.travis-ci.org/wuxi-nextcode/nextcode-python-sdk.svg?branch=master)](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[![codecov](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master/graph/badge.svg)](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[![Supported Python
versions](https://img.shields.io/pypi/pyversions/nextcode-sdk.svg)](https://pypi.org/project/nextcode-sdk/)
[![Code style:
black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
# nextcode Python SDK

Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.

### Installation
```bash
$ pip install nextcode-sdk -U
```

```bash
$ pip install nextcode-sdk[jupyter] -U
```

### Getting started

```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()

```

### Jupyter notebooks

To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.

```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```

Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```

Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100

# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100

# multi-line statement
%%gor 
gor #dbsnp# 
  | top 100

# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp# 
  | top 100

# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp# 
  | top 100

# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar] 
  | top 100

# reference a local variable
num = 10
%%gor
nor [var:myvar] 
  | top $num

```


%package help
Summary:	Development documents and examples for nextcode-sdk
Provides:	python3-nextcode-sdk-doc
%description help
[![Latest version on
PyPi](https://badge.fury.io/py/nextcode-sdk.svg)](https://badge.fury.io/py/nextcode-sdk)
[![Build Status](https://api.travis-ci.org/wuxi-nextcode/nextcode-python-sdk.svg?branch=master)](https://travis-ci.org/wuxi-nextcode/nextcode-python-sdk)
[![codecov](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master/graph/badge.svg)](https://codecov.io/gh/wuxi-nextcode/nextcode-python-sdk/branch/master)
[![Supported Python
versions](https://img.shields.io/pypi/pyversions/nextcode-sdk.svg)](https://pypi.org/project/nextcode-sdk/)
[![Code style:
black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
# nextcode Python SDK

Nextcode-sdk is a python package for interfacing with Wuxi Nextcode services.

### Installation
```bash
$ pip install nextcode-sdk -U
```

```bash
$ pip install nextcode-sdk[jupyter] -U
```

### Getting started

```python
import nextcode
client = nextcode.Client(api_key="xxx")
qry = client.service("query")
qry.status()
qry.get_queries()
qry.get_query(query_id)
qry.list_templates()

```

### Jupyter notebooks

To start using the python sdk in Jupyter Notebooks you will first need to install it using the `jupyter` extras and then load the gor `%` magic extension.

```bash
! pip install nextcode-sdk[jupyter] -U
%load_ext nextcode
```

Jupyter notebooks running on the Wuxi Nextcode servers are preconfigured with a `GOR_API_KEY` and `GOR_PROJECT`. If you are running outside such an environment you will need to configure your environment accordingly:
```bash
%env GOR_API_KEY="***"
%env GOR_API_PROJECT="test_project"
# optionally set the LOG_QUERY environment variable to get more information about running queries.
%env LOG_QUERY=1
```

Now you can run gor with the following syntax:
```python
# simple one-liner
%gor gor #dbsnp# | top 100

# one-liner which outputs to local variable as a pandas dataframe
results = %gor gor #dbsnp# | top 100

# multi-line statement
%%gor 
gor #dbsnp# 
  | top 100

# multi-line statement which writes results into project folder
%%gor user_data/results.tsv <<
nor #dbsnp# 
  | top 100

# output results to local variable as a pandas dataframe
%%gor myvar <<
nor #dbsnp# 
  | top 100

# read from a pandas dataframe in a local variable
%%gor
nor [var:myvar] 
  | top 100

# reference a local variable
num = 10
%%gor
nor [var:myvar] 
  | top $num

```


%prep
%autosetup -n nextcode-sdk-2.1.1

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-nextcode-sdk -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 2.1.1-1
- Package Spec generated