%global _empty_manifest_terminate_build 0 Name: python-BESST Version: 2.2.8 Release: 1 Summary: Scaffolder for genomic assemblies. License: GPLv3 URL: https://github.com/ksahlin/BESST Source0: https://mirrors.nju.edu.cn/pypi/web/packages/4e/77/8e3ef4977dafc1c270b87f465b2850a346e9529077934ae3f8c520f3608d/BESST-2.2.8.tar.gz BuildArch: noarch %description Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [![Build Status](https://travis-ci.org/ksahlin/BESST.svg?branch=master)](https://travis-ci.org/ksahlin/BESST) BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1]. For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md. Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib. 1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long) 2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281) 3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064) %package -n python3-BESST Summary: Scaffolder for genomic assemblies. Provides: python-BESST BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-BESST Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [![Build Status](https://travis-ci.org/ksahlin/BESST.svg?branch=master)](https://travis-ci.org/ksahlin/BESST) BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1]. For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md. Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib. 1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long) 2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281) 3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064) %package help Summary: Development documents and examples for BESST Provides: python3-BESST-doc %description help Supported on Linux / OSX with python2 (versions >= 2.7) and python3 (versions >=3.4) [![Build Status](https://travis-ci.org/ksahlin/BESST.svg?branch=master)](https://travis-ci.org/ksahlin/BESST) BESST is a package for scaffolding genomic assemblies. BESST v1.0.4 is first described in [2] with various improvements in v2.0 (e.g. [3]). BESST is based on GapEst [1]. For installation, see docs/INSTALL.md. Manual is found in docs/MANUAL.md. Please cite [2] and later manuscripts when using BESST! BiBTeX entries are available in the file besst.bib. 1. Sahlin K, Street N, Lundeberg J, Arvestad L (2012) "Improved gap size estimation for scaffolding algorithms." Bioinformatics 28(17), 2215-2222 [Link](http://bioinformatics.oxfordjournals.org/content/28/17/2215.long) 2. Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L (2014) "BESST--efficient scaffolding of large fragmented assemblies." BMC Bioinformatics 15, 281 [Link](http://www.biomedcentral.com/1471-2105/15/281) 3. Sahlin K, Chikhi R, Arvestad L (2016) "Assembly scaffolding with PE-contaminated mate-pair libraries." Bioinformatics [Link](https://bioinformatics.oxfordjournals.org/content/early/2016/03/09/bioinformatics.btw064) %prep %autosetup -n BESST-2.2.8 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-BESST -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Mon May 15 2023 Python_Bot - 2.2.8-1 - Package Spec generated