%global _empty_manifest_terminate_build 0 Name: python-cortix Version: 1.1.32 Release: 1 Summary: Cortix is a Python library for network dynamics modeling and HPC simulation. License: GNU General Public License v3 (GPLv3) URL: https://cortix.org Source0: https://mirrors.nju.edu.cn/pypi/web/packages/5e/a8/f2306c39e523047f7f61cf358c68065d2f8d2912ff3e447a8cf776cdb28c/cortix-1.1.32.tar.gz BuildArch: noarch Requires: python3-pandas Requires: python3-matplotlib Requires: python3-numpy Requires: python3-scipy Requires: python3-pytest Requires: python3-graphviz %description # Cortix A Python library for network dynamics modeling and HPC simulation. + [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb) + [Documentation on the web](https://cortix.org) ![Website](https://img.shields.io/website/https/github.com/dpploy/cortix.svg) [![Repo Size](https://img.shields.io/github/repo-size/dpploy/cortix.svg?style=flat)](https://cortix.org) [![PyPI version](https://badge.fury.io/py/cortix.svg)](https://badge.fury.io/py/cortix) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/Django.svg)](https://badge.fury.io/py/cortix) [![codecov](https://codecov.io/gh/dpploy/cortix/branch/master/graph/badge.svg)](https://codecov.io/gh/dpploy/cortix) ![](cortix/docs/cortix-cover.png) ## What is Cortix? * Cortix is a massively parallel Python library for system-level module coupling, execution, and analysis of dynamical system models that exchange time-dependent data. * Cortix takes as input a collection of computational modules and provides an environment for the coupling of these modules into a single simulation. * Cortix supports: - Module decoupling - Communication between modules - Data visualization * Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores. ## Installation: start by installing [MPI](https://www.open-mpi.org/) ## Installing via PyPI ``` pip install --user cortix ``` ## Installing from source 1. Clone this repository to install the latest version of Cortix ``` git clone https://github.com/dpploy/cortix.git ``` 2. Install the required dependencies listed in `requirements.txt` ``` pip install --user -r cortix/requirements.txt ``` 3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable ``` export PYTHONPATH=$PYTHONPATH:$(pwd) ``` Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent ### Verify your Cortix install by running the Droplet example ``` mpirun -np 12 examples/droplet_run.py ``` ## Testing Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory ``` cd tests && py.test ``` ## Using Cortix Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started! ## Team - Valmor F. de Almeida: valmor\_dealmeida@uml.edu - Taha M. Azzaoui: tazzaoui@cs.uml.edu - Seamus D. Gallagher: seamus\_gallagher@student.uml.edu - Austin Rotker: austin_rotker@student.uml.edu - Gilberto E. Alas: gilberto\_alas@student.uml.edu ## Contributing Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change. Please make sure to update tests as appropriate. ## Location Cortix Group c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/) 110 Canal St., 3rd Floor Lowell, MA 01852 %package -n python3-cortix Summary: Cortix is a Python library for network dynamics modeling and HPC simulation. Provides: python-cortix BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-cortix # Cortix A Python library for network dynamics modeling and HPC simulation. + [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb) + [Documentation on the web](https://cortix.org) ![Website](https://img.shields.io/website/https/github.com/dpploy/cortix.svg) [![Repo Size](https://img.shields.io/github/repo-size/dpploy/cortix.svg?style=flat)](https://cortix.org) [![PyPI version](https://badge.fury.io/py/cortix.svg)](https://badge.fury.io/py/cortix) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/Django.svg)](https://badge.fury.io/py/cortix) [![codecov](https://codecov.io/gh/dpploy/cortix/branch/master/graph/badge.svg)](https://codecov.io/gh/dpploy/cortix) ![](cortix/docs/cortix-cover.png) ## What is Cortix? * Cortix is a massively parallel Python library for system-level module coupling, execution, and analysis of dynamical system models that exchange time-dependent data. * Cortix takes as input a collection of computational modules and provides an environment for the coupling of these modules into a single simulation. * Cortix supports: - Module decoupling - Communication between modules - Data visualization * Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores. ## Installation: start by installing [MPI](https://www.open-mpi.org/) ## Installing via PyPI ``` pip install --user cortix ``` ## Installing from source 1. Clone this repository to install the latest version of Cortix ``` git clone https://github.com/dpploy/cortix.git ``` 2. Install the required dependencies listed in `requirements.txt` ``` pip install --user -r cortix/requirements.txt ``` 3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable ``` export PYTHONPATH=$PYTHONPATH:$(pwd) ``` Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent ### Verify your Cortix install by running the Droplet example ``` mpirun -np 12 examples/droplet_run.py ``` ## Testing Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory ``` cd tests && py.test ``` ## Using Cortix Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started! ## Team - Valmor F. de Almeida: valmor\_dealmeida@uml.edu - Taha M. Azzaoui: tazzaoui@cs.uml.edu - Seamus D. Gallagher: seamus\_gallagher@student.uml.edu - Austin Rotker: austin_rotker@student.uml.edu - Gilberto E. Alas: gilberto\_alas@student.uml.edu ## Contributing Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change. Please make sure to update tests as appropriate. ## Location Cortix Group c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/) 110 Canal St., 3rd Floor Lowell, MA 01852 %package help Summary: Development documents and examples for cortix Provides: python3-cortix-doc %description help # Cortix A Python library for network dynamics modeling and HPC simulation. + [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb) + [Documentation on the web](https://cortix.org) ![Website](https://img.shields.io/website/https/github.com/dpploy/cortix.svg) [![Repo Size](https://img.shields.io/github/repo-size/dpploy/cortix.svg?style=flat)](https://cortix.org) [![PyPI version](https://badge.fury.io/py/cortix.svg)](https://badge.fury.io/py/cortix) [![PyPI - Python Version](https://img.shields.io/pypi/pyversions/Django.svg)](https://badge.fury.io/py/cortix) [![codecov](https://codecov.io/gh/dpploy/cortix/branch/master/graph/badge.svg)](https://codecov.io/gh/dpploy/cortix) ![](cortix/docs/cortix-cover.png) ## What is Cortix? * Cortix is a massively parallel Python library for system-level module coupling, execution, and analysis of dynamical system models that exchange time-dependent data. * Cortix takes as input a collection of computational modules and provides an environment for the coupling of these modules into a single simulation. * Cortix supports: - Module decoupling - Communication between modules - Data visualization * Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores. ## Installation: start by installing [MPI](https://www.open-mpi.org/) ## Installing via PyPI ``` pip install --user cortix ``` ## Installing from source 1. Clone this repository to install the latest version of Cortix ``` git clone https://github.com/dpploy/cortix.git ``` 2. Install the required dependencies listed in `requirements.txt` ``` pip install --user -r cortix/requirements.txt ``` 3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable ``` export PYTHONPATH=$PYTHONPATH:$(pwd) ``` Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent ### Verify your Cortix install by running the Droplet example ``` mpirun -np 12 examples/droplet_run.py ``` ## Testing Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory ``` cd tests && py.test ``` ## Using Cortix Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started! ## Team - Valmor F. de Almeida: valmor\_dealmeida@uml.edu - Taha M. Azzaoui: tazzaoui@cs.uml.edu - Seamus D. Gallagher: seamus\_gallagher@student.uml.edu - Austin Rotker: austin_rotker@student.uml.edu - Gilberto E. Alas: gilberto\_alas@student.uml.edu ## Contributing Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change. Please make sure to update tests as appropriate. ## Location Cortix Group c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/) 110 Canal St., 3rd Floor Lowell, MA 01852 %prep %autosetup -n cortix-1.1.32 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-cortix -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Mon May 15 2023 Python_Bot - 1.1.32-1 - Package Spec generated