%global _empty_manifest_terminate_build 0
Name: python-cortix
Version: 1.1.32
Release: 1
Summary: Cortix is a Python library for network dynamics modeling and HPC simulation.
License: GNU General Public License v3 (GPLv3)
URL: https://cortix.org
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/5e/a8/f2306c39e523047f7f61cf358c68065d2f8d2912ff3e447a8cf776cdb28c/cortix-1.1.32.tar.gz
BuildArch: noarch
Requires: python3-pandas
Requires: python3-matplotlib
Requires: python3-numpy
Requires: python3-scipy
Requires: python3-pytest
Requires: python3-graphviz
%description
# Cortix
A Python library for network dynamics modeling and HPC simulation.
+ [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb)
+ [Documentation on the web](https://cortix.org)
[](https://cortix.org)
[](https://badge.fury.io/py/cortix)
[](https://badge.fury.io/py/cortix)
[](https://codecov.io/gh/dpploy/cortix)
## What is Cortix?
* Cortix is a massively parallel Python library for system-level module coupling, execution, and
analysis of dynamical system models that exchange time-dependent data.
* Cortix takes as input a collection of computational modules and provides an
environment for the coupling of these modules into a single simulation.
* Cortix supports:
- Module decoupling
- Communication between modules
- Data visualization
* Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores.
## Installation: start by installing [MPI](https://www.open-mpi.org/)
## Installing via PyPI
```
pip install --user cortix
```
## Installing from source
1. Clone this repository to install the latest version of Cortix
```
git clone https://github.com/dpploy/cortix.git
```
2. Install the required dependencies listed in `requirements.txt`
```
pip install --user -r cortix/requirements.txt
```
3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable
```
export PYTHONPATH=$PYTHONPATH:$(pwd)
```
Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent
### Verify your Cortix install by running the Droplet example
```
mpirun -np 12 examples/droplet_run.py
```
## Testing
Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory
```
cd tests && py.test
```
## Using Cortix
Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started!
## Team
- Valmor F. de Almeida: valmor\_dealmeida@uml.edu
- Taha M. Azzaoui: tazzaoui@cs.uml.edu
- Seamus D. Gallagher: seamus\_gallagher@student.uml.edu
- Austin Rotker: austin_rotker@student.uml.edu
- Gilberto E. Alas: gilberto\_alas@student.uml.edu
## Contributing
Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change.
Please make sure to update tests as appropriate.
## Location
Cortix Group
c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/)
110 Canal St., 3rd Floor
Lowell, MA 01852
%package -n python3-cortix
Summary: Cortix is a Python library for network dynamics modeling and HPC simulation.
Provides: python-cortix
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-cortix
# Cortix
A Python library for network dynamics modeling and HPC simulation.
+ [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb)
+ [Documentation on the web](https://cortix.org)
[](https://cortix.org)
[](https://badge.fury.io/py/cortix)
[](https://badge.fury.io/py/cortix)
[](https://codecov.io/gh/dpploy/cortix)
## What is Cortix?
* Cortix is a massively parallel Python library for system-level module coupling, execution, and
analysis of dynamical system models that exchange time-dependent data.
* Cortix takes as input a collection of computational modules and provides an
environment for the coupling of these modules into a single simulation.
* Cortix supports:
- Module decoupling
- Communication between modules
- Data visualization
* Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores.
## Installation: start by installing [MPI](https://www.open-mpi.org/)
## Installing via PyPI
```
pip install --user cortix
```
## Installing from source
1. Clone this repository to install the latest version of Cortix
```
git clone https://github.com/dpploy/cortix.git
```
2. Install the required dependencies listed in `requirements.txt`
```
pip install --user -r cortix/requirements.txt
```
3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable
```
export PYTHONPATH=$PYTHONPATH:$(pwd)
```
Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent
### Verify your Cortix install by running the Droplet example
```
mpirun -np 12 examples/droplet_run.py
```
## Testing
Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory
```
cd tests && py.test
```
## Using Cortix
Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started!
## Team
- Valmor F. de Almeida: valmor\_dealmeida@uml.edu
- Taha M. Azzaoui: tazzaoui@cs.uml.edu
- Seamus D. Gallagher: seamus\_gallagher@student.uml.edu
- Austin Rotker: austin_rotker@student.uml.edu
- Gilberto E. Alas: gilberto\_alas@student.uml.edu
## Contributing
Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change.
Please make sure to update tests as appropriate.
## Location
Cortix Group
c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/)
110 Canal St., 3rd Floor
Lowell, MA 01852
%package help
Summary: Development documents and examples for cortix
Provides: python3-cortix-doc
%description help
# Cortix
A Python library for network dynamics modeling and HPC simulation.
+ [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb)
+ [Documentation on the web](https://cortix.org)
[](https://cortix.org)
[](https://badge.fury.io/py/cortix)
[](https://badge.fury.io/py/cortix)
[](https://codecov.io/gh/dpploy/cortix)
## What is Cortix?
* Cortix is a massively parallel Python library for system-level module coupling, execution, and
analysis of dynamical system models that exchange time-dependent data.
* Cortix takes as input a collection of computational modules and provides an
environment for the coupling of these modules into a single simulation.
* Cortix supports:
- Module decoupling
- Communication between modules
- Data visualization
* Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores.
## Installation: start by installing [MPI](https://www.open-mpi.org/)
## Installing via PyPI
```
pip install --user cortix
```
## Installing from source
1. Clone this repository to install the latest version of Cortix
```
git clone https://github.com/dpploy/cortix.git
```
2. Install the required dependencies listed in `requirements.txt`
```
pip install --user -r cortix/requirements.txt
```
3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable
```
export PYTHONPATH=$PYTHONPATH:$(pwd)
```
Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent
### Verify your Cortix install by running the Droplet example
```
mpirun -np 12 examples/droplet_run.py
```
## Testing
Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory
```
cd tests && py.test
```
## Using Cortix
Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started!
## Team
- Valmor F. de Almeida: valmor\_dealmeida@uml.edu
- Taha M. Azzaoui: tazzaoui@cs.uml.edu
- Seamus D. Gallagher: seamus\_gallagher@student.uml.edu
- Austin Rotker: austin_rotker@student.uml.edu
- Gilberto E. Alas: gilberto\_alas@student.uml.edu
## Contributing
Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change.
Please make sure to update tests as appropriate.
## Location
Cortix Group
c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/)
110 Canal St., 3rd Floor
Lowell, MA 01852
%prep
%autosetup -n cortix-1.1.32
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-cortix -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Tue May 30 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.32-1
- Package Spec generated