%global _empty_manifest_terminate_build 0 Name: python-fuc Version: 0.36.0 Release: 1 Summary: Frequently used commands in bioinformatics License: MIT URL: https://github.com/sbslee/fuc Source0: https://mirrors.nju.edu.cn/pypi/web/packages/c3/c5/f5e7f40ce54db8de49d3092345dd9d5f05aba49a8f1c484bb8e5e78e8310/fuc-0.36.0.tar.gz BuildArch: noarch Requires: python3-biopython Requires: python3-lxml Requires: python3-matplotlib Requires: python3-matplotlib-venn Requires: python3-numpy Requires: python3-pandas Requires: python3-pyranges Requires: python3-pysam Requires: python3-scipy Requires: python3-seaborn Requires: python3-statsmodels %description The main goal of the fuc package (pronounced "eff-you-see") is to wrap some of the most **f**\ requently **u**\ sed **c**\ ommands in the field of bioinformatics into one place. The package is written in Python, and supports both command line interface (CLI) and application programming interface (API) whose documentations are available at the `Read the Docs `_. Currently, fuc can be used to analyze, summarize, visualize, and manipulate the following file formats: - Sequence Alignment/Map (SAM) - Binary Alignment/Map (BAM) - CRAM - Variant Call Format (VCF) - Mutation Annotation Format (MAF) - Browser Extensible Data (BED) - FASTQ - FASTA - General Feature Format (GFF) - Gene Transfer Format (GTF) - delimiter-separated values format (e.g. comma-separated values or CSV format) Additionally, fuc can be used to parse output data from the following programs: - `Ensembl Variant Effect Predictor (VEP) `__ - `SnpEff `__ - `bcl2fastq and bcl2fastq2 `__ - `Kallisto `__ Your contributions (e.g. feature ideas, pull requests) are most welcome. | Author: Seung-been "Steven" Lee | Email: sbstevenlee@gmail.com | License: MIT License %package -n python3-fuc Summary: Frequently used commands in bioinformatics Provides: python-fuc BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-fuc The main goal of the fuc package (pronounced "eff-you-see") is to wrap some of the most **f**\ requently **u**\ sed **c**\ ommands in the field of bioinformatics into one place. The package is written in Python, and supports both command line interface (CLI) and application programming interface (API) whose documentations are available at the `Read the Docs `_. Currently, fuc can be used to analyze, summarize, visualize, and manipulate the following file formats: - Sequence Alignment/Map (SAM) - Binary Alignment/Map (BAM) - CRAM - Variant Call Format (VCF) - Mutation Annotation Format (MAF) - Browser Extensible Data (BED) - FASTQ - FASTA - General Feature Format (GFF) - Gene Transfer Format (GTF) - delimiter-separated values format (e.g. comma-separated values or CSV format) Additionally, fuc can be used to parse output data from the following programs: - `Ensembl Variant Effect Predictor (VEP) `__ - `SnpEff `__ - `bcl2fastq and bcl2fastq2 `__ - `Kallisto `__ Your contributions (e.g. feature ideas, pull requests) are most welcome. | Author: Seung-been "Steven" Lee | Email: sbstevenlee@gmail.com | License: MIT License %package help Summary: Development documents and examples for fuc Provides: python3-fuc-doc %description help The main goal of the fuc package (pronounced "eff-you-see") is to wrap some of the most **f**\ requently **u**\ sed **c**\ ommands in the field of bioinformatics into one place. The package is written in Python, and supports both command line interface (CLI) and application programming interface (API) whose documentations are available at the `Read the Docs `_. Currently, fuc can be used to analyze, summarize, visualize, and manipulate the following file formats: - Sequence Alignment/Map (SAM) - Binary Alignment/Map (BAM) - CRAM - Variant Call Format (VCF) - Mutation Annotation Format (MAF) - Browser Extensible Data (BED) - FASTQ - FASTA - General Feature Format (GFF) - Gene Transfer Format (GTF) - delimiter-separated values format (e.g. comma-separated values or CSV format) Additionally, fuc can be used to parse output data from the following programs: - `Ensembl Variant Effect Predictor (VEP) `__ - `SnpEff `__ - `bcl2fastq and bcl2fastq2 `__ - `Kallisto `__ Your contributions (e.g. feature ideas, pull requests) are most welcome. | Author: Seung-been "Steven" Lee | Email: sbstevenlee@gmail.com | License: MIT License %prep %autosetup -n fuc-0.36.0 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-fuc -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Wed May 31 2023 Python_Bot - 0.36.0-1 - Package Spec generated