Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1686562496.899986/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1686562496.899986/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/python-bcbio-nextgen-1.1.5-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1686562496.899986/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/python-bcbio-nextgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jtMz22 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bcbio-nextgen-1.1.5 + /usr/bin/gzip -dc /builddir/build/SOURCES/bcbio-nextgen-1.1.5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd bcbio-nextgen-1.1.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZWfXEU + umask 022 + cd /builddir/build/BUILD + cd bcbio-nextgen-1.1.5 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/bcbio copying bcbio/setpath.py -> build/lib/bcbio copying bcbio/__init__.py -> build/lib/bcbio copying bcbio/install.py -> build/lib/bcbio copying bcbio/utils.py -> build/lib/bcbio creating build/lib/tests creating build/lib/tests/unit copying tests/unit/test_alignprep.py -> build/lib/tests/unit copying tests/unit/__init__.py -> build/lib/tests/unit copying tests/unit/data.py -> build/lib/tests/unit copying tests/unit/conftest.py -> build/lib/tests/unit creating build/lib/tests/integration copying tests/integration/test_pipeline.py -> build/lib/tests/integration copying tests/integration/__init__.py -> build/lib/tests/integration copying tests/integration/test_SequencingDump.py -> build/lib/tests/integration copying tests/integration/test_S3_pipelines.py -> build/lib/tests/integration copying tests/integration/test_automated_analysis.py -> build/lib/tests/integration creating build/lib/tests/unit/upload copying tests/unit/upload/__init__.py -> build/lib/tests/unit/upload copying tests/unit/upload/test_upload.py -> build/lib/tests/unit/upload creating build/lib/tests/unit/pipeline copying tests/unit/pipeline/test_datadict.py -> build/lib/tests/unit/pipeline copying tests/unit/pipeline/__init__.py -> build/lib/tests/unit/pipeline copying tests/unit/pipeline/test_rnaseq.py -> build/lib/tests/unit/pipeline creating build/lib/tests/unit/distributed copying tests/unit/distributed/__init__.py -> build/lib/tests/unit/distributed copying tests/unit/distributed/test_transaction.py -> build/lib/tests/unit/distributed creating build/lib/tests/unit/rnaseq copying tests/unit/rnaseq/test_ericscript.py -> build/lib/tests/unit/rnaseq copying tests/unit/rnaseq/__init__.py -> build/lib/tests/unit/rnaseq creating build/lib/tests/unit/ngsalign copying tests/unit/ngsalign/__init__.py -> build/lib/tests/unit/ngsalign creating build/lib/tests/integration/rnaseq copying tests/integration/rnaseq/test_ericscript.py -> build/lib/tests/integration/rnaseq copying tests/integration/rnaseq/__init__.py -> build/lib/tests/integration/rnaseq creating build/lib/bcbio/bed copying bcbio/bed/__init__.py -> build/lib/bcbio/bed creating build/lib/bcbio/qc copying bcbio/qc/damage.py -> build/lib/bcbio/qc copying bcbio/qc/coverage.py -> build/lib/bcbio/qc copying bcbio/qc/__init__.py -> build/lib/bcbio/qc copying bcbio/qc/chipseq.py -> build/lib/bcbio/qc copying bcbio/qc/qsignature.py -> build/lib/bcbio/qc copying bcbio/qc/srna.py -> build/lib/bcbio/qc copying bcbio/qc/umi.py -> build/lib/bcbio/qc copying bcbio/qc/samtools.py -> build/lib/bcbio/qc copying bcbio/qc/kraken.py -> build/lib/bcbio/qc copying bcbio/qc/preseq.py -> build/lib/bcbio/qc copying bcbio/qc/multiqc.py -> build/lib/bcbio/qc copying bcbio/qc/fastqc.py -> build/lib/bcbio/qc copying bcbio/qc/atropos.py -> build/lib/bcbio/qc copying bcbio/qc/viral.py -> build/lib/bcbio/qc copying bcbio/qc/contamination.py -> build/lib/bcbio/qc copying bcbio/qc/picard.py -> build/lib/bcbio/qc copying bcbio/qc/qualimap.py -> build/lib/bcbio/qc copying bcbio/qc/variant.py -> build/lib/bcbio/qc creating build/lib/bcbio/server copying bcbio/server/main.py -> build/lib/bcbio/server copying bcbio/server/__init__.py -> build/lib/bcbio/server copying bcbio/server/run.py -> build/lib/bcbio/server copying bcbio/server/background.py -> build/lib/bcbio/server creating build/lib/bcbio/broad copying bcbio/broad/picardrun.py -> build/lib/bcbio/broad copying bcbio/broad/metrics.py -> build/lib/bcbio/broad copying bcbio/broad/__init__.py -> build/lib/bcbio/broad creating build/lib/bcbio/upload copying bcbio/upload/filesystem.py -> build/lib/bcbio/upload copying bcbio/upload/galaxy.py -> build/lib/bcbio/upload copying bcbio/upload/shared.py -> build/lib/bcbio/upload copying bcbio/upload/__init__.py -> build/lib/bcbio/upload copying bcbio/upload/s3.py -> build/lib/bcbio/upload copying bcbio/upload/irods.py -> build/lib/bcbio/upload creating build/lib/bcbio/pipeline copying bcbio/pipeline/rnaseq.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/sra.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/region.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/fastq.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/main.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/datadict.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/merge.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/shared.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/run_info.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/sample.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/__init__.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/archive.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/variation.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/config_utils.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/tools.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/genome.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/cleanbam.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/qcsummary.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/version.py -> build/lib/bcbio/pipeline copying bcbio/pipeline/alignment.py -> build/lib/bcbio/pipeline creating build/lib/bcbio/log copying bcbio/log/logbook_zmqpush.py -> build/lib/bcbio/log copying bcbio/log/__init__.py -> build/lib/bcbio/log creating build/lib/bcbio/picard copying bcbio/picard/metrics.py -> build/lib/bcbio/picard copying bcbio/picard/__init__.py -> build/lib/bcbio/picard copying bcbio/picard/utils.py -> build/lib/bcbio/picard creating build/lib/bcbio/provenance copying bcbio/provenance/system.py -> build/lib/bcbio/provenance copying bcbio/provenance/programs.py -> build/lib/bcbio/provenance copying bcbio/provenance/__init__.py -> build/lib/bcbio/provenance copying bcbio/provenance/profile.py -> build/lib/bcbio/provenance copying bcbio/provenance/diagnostics.py -> build/lib/bcbio/provenance copying bcbio/provenance/versioncheck.py -> build/lib/bcbio/provenance copying bcbio/provenance/do.py -> build/lib/bcbio/provenance copying bcbio/provenance/data.py -> build/lib/bcbio/provenance creating build/lib/bcbio/distributed copying bcbio/distributed/resources.py -> build/lib/bcbio/distributed copying bcbio/distributed/ipython.py -> build/lib/bcbio/distributed copying bcbio/distributed/clusterk.py -> build/lib/bcbio/distributed copying bcbio/distributed/multi.py -> build/lib/bcbio/distributed copying bcbio/distributed/clargs.py -> build/lib/bcbio/distributed copying bcbio/distributed/__init__.py -> build/lib/bcbio/distributed copying bcbio/distributed/transaction.py -> build/lib/bcbio/distributed copying bcbio/distributed/runfn.py -> build/lib/bcbio/distributed copying bcbio/distributed/prun.py -> build/lib/bcbio/distributed copying bcbio/distributed/split.py -> build/lib/bcbio/distributed copying bcbio/distributed/ipythontasks.py -> build/lib/bcbio/distributed copying bcbio/distributed/multitasks.py -> build/lib/bcbio/distributed copying bcbio/distributed/objectstore.py -> build/lib/bcbio/distributed creating build/lib/bcbio/illumina copying bcbio/illumina/demultiplex.py -> build/lib/bcbio/illumina copying bcbio/illumina/__init__.py -> build/lib/bcbio/illumina copying bcbio/illumina/machine.py -> build/lib/bcbio/illumina copying bcbio/illumina/flowcell.py -> build/lib/bcbio/illumina copying bcbio/illumina/samplesheet.py -> build/lib/bcbio/illumina copying bcbio/illumina/transfer.py -> build/lib/bcbio/illumina creating build/lib/bcbio/hmmer copying bcbio/hmmer/__init__.py -> build/lib/bcbio/hmmer copying bcbio/hmmer/search.py -> build/lib/bcbio/hmmer creating build/lib/bcbio/workflow copying bcbio/workflow/stormseq.py -> build/lib/bcbio/workflow copying bcbio/workflow/template.py -> build/lib/bcbio/workflow copying bcbio/workflow/__init__.py -> build/lib/bcbio/workflow copying bcbio/workflow/xprize.py -> build/lib/bcbio/workflow creating build/lib/bcbio/chipseq copying bcbio/chipseq/peaks.py -> build/lib/bcbio/chipseq copying bcbio/chipseq/__init__.py -> build/lib/bcbio/chipseq copying bcbio/chipseq/macs2.py -> build/lib/bcbio/chipseq creating build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/loh.py -> build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/__init__.py -> build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/chromhacks.py -> build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/bubbletree.py -> build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/theta.py -> build/lib/bcbio/heterogeneity copying bcbio/heterogeneity/phylowgs.py -> build/lib/bcbio/heterogeneity creating build/lib/bcbio/rnaseq copying bcbio/rnaseq/cpat.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/pizzly.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/bcbiornaseq.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/express.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/annotate_gtf.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/salmon.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/qc.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/ericscript.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/__init__.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/singlecellexperiment.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/gtf.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/umi.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/rapmap.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/variation.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/dexseq.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/sailfish.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/spikein.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/cufflinks.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/featureCounts.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/count.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/kallisto.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/oncofuse.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/rsem.py -> build/lib/bcbio/rnaseq copying bcbio/rnaseq/stringtie.py -> build/lib/bcbio/rnaseq creating build/lib/bcbio/bam copying bcbio/bam/skewer.py -> build/lib/bcbio/bam copying bcbio/bam/fastq.py -> build/lib/bcbio/bam copying bcbio/bam/fasta.py -> build/lib/bcbio/bam copying bcbio/bam/coverage.py -> build/lib/bcbio/bam copying bcbio/bam/cram.py -> build/lib/bcbio/bam copying bcbio/bam/ref.py -> build/lib/bcbio/bam copying bcbio/bam/readstats.py -> build/lib/bcbio/bam copying bcbio/bam/__init__.py -> build/lib/bcbio/bam copying bcbio/bam/callable.py -> build/lib/bcbio/bam copying bcbio/bam/counts.py -> build/lib/bcbio/bam copying bcbio/bam/trim.py -> build/lib/bcbio/bam creating build/lib/bcbio/ngsalign copying bcbio/ngsalign/snap.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/hisat2.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/postalign.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/bowtie.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/bbmap.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/__init__.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/minimap2.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/novoalign.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/bwa.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/bowtie2.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/mosaik.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/tophat.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/star.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/rtg.py -> build/lib/bcbio/ngsalign copying bcbio/ngsalign/alignprep.py -> build/lib/bcbio/ngsalign creating build/lib/bcbio/galaxy copying bcbio/galaxy/api.py -> build/lib/bcbio/galaxy copying bcbio/galaxy/nglims.py -> build/lib/bcbio/galaxy copying bcbio/galaxy/loc.py -> build/lib/bcbio/galaxy copying bcbio/galaxy/__init__.py -> build/lib/bcbio/galaxy creating build/lib/bcbio/srna copying bcbio/srna/mirdeep.py -> build/lib/bcbio/srna copying bcbio/srna/group.py -> build/lib/bcbio/srna copying bcbio/srna/mirge.py -> build/lib/bcbio/srna copying bcbio/srna/qc.py -> build/lib/bcbio/srna copying bcbio/srna/sample.py -> build/lib/bcbio/srna copying bcbio/srna/__init__.py -> build/lib/bcbio/srna copying bcbio/srna/umis.py -> build/lib/bcbio/srna creating build/lib/bcbio/hla copying bcbio/hla/bwakit.py -> build/lib/bcbio/hla copying bcbio/hla/groups.py -> build/lib/bcbio/hla copying bcbio/hla/__init__.py -> build/lib/bcbio/hla copying bcbio/hla/optitype.py -> build/lib/bcbio/hla creating build/lib/bcbio/cwl copying bcbio/cwl/inspect.py -> build/lib/bcbio/cwl copying bcbio/cwl/create.py -> build/lib/bcbio/cwl copying bcbio/cwl/tool.py -> build/lib/bcbio/cwl copying bcbio/cwl/main.py -> build/lib/bcbio/cwl copying bcbio/cwl/__init__.py -> build/lib/bcbio/cwl copying bcbio/cwl/workflow.py -> build/lib/bcbio/cwl copying bcbio/cwl/hpc.py -> build/lib/bcbio/cwl copying bcbio/cwl/defs.py -> build/lib/bcbio/cwl copying bcbio/cwl/cwlutils.py -> build/lib/bcbio/cwl creating build/lib/bcbio/structural copying bcbio/structural/purple.py -> build/lib/bcbio/structural copying bcbio/structural/seq2c.py -> build/lib/bcbio/structural copying bcbio/structural/gatkcnv.py -> build/lib/bcbio/structural copying bcbio/structural/validate.py -> build/lib/bcbio/structural copying bcbio/structural/delly.py -> build/lib/bcbio/structural copying bcbio/structural/pindel.py -> build/lib/bcbio/structural copying bcbio/structural/plot.py -> build/lib/bcbio/structural copying bcbio/structural/manta.py -> build/lib/bcbio/structural copying bcbio/structural/shared.py -> build/lib/bcbio/structural copying bcbio/structural/__init__.py -> build/lib/bcbio/structural copying bcbio/structural/prioritize.py -> build/lib/bcbio/structural copying bcbio/structural/regions.py -> build/lib/bcbio/structural copying bcbio/structural/cn_mops.py -> build/lib/bcbio/structural copying bcbio/structural/purecn.py -> build/lib/bcbio/structural copying bcbio/structural/cnvkit.py -> build/lib/bcbio/structural copying bcbio/structural/wham.py -> build/lib/bcbio/structural copying bcbio/structural/titancna.py -> build/lib/bcbio/structural copying bcbio/structural/metasv.py -> build/lib/bcbio/structural copying bcbio/structural/annotate.py -> build/lib/bcbio/structural copying bcbio/structural/battenberg.py -> build/lib/bcbio/structural copying bcbio/structural/hydra.py -> build/lib/bcbio/structural copying bcbio/structural/lumpy.py -> build/lib/bcbio/structural copying bcbio/structural/convert.py -> build/lib/bcbio/structural copying bcbio/structural/gridss.py -> build/lib/bcbio/structural creating build/lib/bcbio/variation copying bcbio/variation/gatkfilter.py -> build/lib/bcbio/variation copying bcbio/variation/sentieon.py -> build/lib/bcbio/variation copying bcbio/variation/vfilter.py -> build/lib/bcbio/variation copying bcbio/variation/annotation.py -> build/lib/bcbio/variation copying bcbio/variation/deepvariant.py -> build/lib/bcbio/variation copying bcbio/variation/pisces.py -> build/lib/bcbio/variation copying bcbio/variation/genotype.py -> build/lib/bcbio/variation copying bcbio/variation/damage.py -> build/lib/bcbio/variation copying bcbio/variation/validate.py -> build/lib/bcbio/variation copying bcbio/variation/effects.py -> build/lib/bcbio/variation copying bcbio/variation/naming.py -> build/lib/bcbio/variation copying bcbio/variation/coverage.py -> build/lib/bcbio/variation copying bcbio/variation/multi.py -> build/lib/bcbio/variation copying bcbio/variation/validateplot.py -> build/lib/bcbio/variation copying bcbio/variation/ploidy.py -> build/lib/bcbio/variation copying bcbio/variation/__init__.py -> build/lib/bcbio/variation copying bcbio/variation/prioritize.py -> build/lib/bcbio/variation copying bcbio/variation/gatk.py -> build/lib/bcbio/variation copying bcbio/variation/peddy.py -> build/lib/bcbio/variation copying bcbio/variation/smcounter2.py -> build/lib/bcbio/variation copying bcbio/variation/samtools.py -> build/lib/bcbio/variation copying bcbio/variation/scalpel.py -> build/lib/bcbio/variation copying bcbio/variation/gatkjoint.py -> build/lib/bcbio/variation copying bcbio/variation/strelka2.py -> build/lib/bcbio/variation copying bcbio/variation/ensemble.py -> build/lib/bcbio/variation copying bcbio/variation/germline.py -> build/lib/bcbio/variation copying bcbio/variation/vardict.py -> build/lib/bcbio/variation copying bcbio/variation/vcfutils.py -> build/lib/bcbio/variation copying bcbio/variation/mutect2.py -> build/lib/bcbio/variation copying bcbio/variation/qsnp.py -> build/lib/bcbio/variation copying bcbio/variation/realign.py -> build/lib/bcbio/variation copying bcbio/variation/octopus.py -> build/lib/bcbio/variation copying bcbio/variation/split.py -> build/lib/bcbio/variation copying bcbio/variation/freebayes.py -> build/lib/bcbio/variation copying bcbio/variation/bedutils.py -> build/lib/bcbio/variation copying bcbio/variation/varscan.py -> build/lib/bcbio/variation copying bcbio/variation/normalize.py -> build/lib/bcbio/variation copying bcbio/variation/population.py -> build/lib/bcbio/variation copying bcbio/variation/joint.py -> build/lib/bcbio/variation copying bcbio/variation/platypus.py -> build/lib/bcbio/variation copying bcbio/variation/vcfanno.py -> build/lib/bcbio/variation copying bcbio/variation/bamprep.py -> build/lib/bcbio/variation copying bcbio/variation/recalibrate.py -> build/lib/bcbio/variation copying bcbio/variation/cortex.py -> build/lib/bcbio/variation copying bcbio/variation/mutect.py -> build/lib/bcbio/variation creating build/lib/bcbio/graph copying bcbio/graph/collectl.py -> build/lib/bcbio/graph copying bcbio/graph/__init__.py -> build/lib/bcbio/graph copying bcbio/graph/graph.py -> build/lib/bcbio/graph creating build/lib/bcbio/pipeline/disambiguate copying bcbio/pipeline/disambiguate/__init__.py -> build/lib/bcbio/pipeline/disambiguate copying bcbio/pipeline/disambiguate/run.py -> build/lib/bcbio/pipeline/disambiguate running egg_info writing bcbio_nextgen.egg-info/PKG-INFO writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt writing top-level names to bcbio_nextgen.egg-info/top_level.txt reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'config/*.ini' adding license file 'LICENSE.txt' writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' creating build/lib/bcbio/data creating build/lib/bcbio/data/umis copying bcbio/data/umis/10x_v2-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/10x_v2-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/dropseq-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-scrb-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/harvard-scrb-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/icell8-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/icell8-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> build/lib/bcbio/data/umis copying bcbio/data/umis/surecell-cb1.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/surecell-cb2.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/surecell-cb3.txt.gz -> build/lib/bcbio/data/umis copying bcbio/data/umis/surecell-transform.json -> build/lib/bcbio/data/umis running build_scripts creating build/scripts-3.9 copying and adjusting scripts/bcbio_nextgen.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_setup_genome.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_prepare_samples.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_fastq_umi_prep.py -> build/scripts-3.9 copying and adjusting scripts/cwltool2wdl.py -> build/scripts-3.9 changing mode of build/scripts-3.9/bcbio_nextgen.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_setup_genome.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_prepare_samples.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_fastq_umi_prep.py from 644 to 755 changing mode of build/scripts-3.9/cwltool2wdl.py from 644 to 755 + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2XCSib + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 ++ dirname /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 + cd bcbio-nextgen-1.1.5 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit copying build/lib/tests/unit/test_alignprep.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/upload copying build/lib/tests/unit/upload/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/upload copying build/lib/tests/unit/upload/test_upload.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/upload creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline copying build/lib/tests/unit/pipeline/test_datadict.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline copying build/lib/tests/unit/pipeline/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline copying build/lib/tests/unit/pipeline/test_rnaseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline copying build/lib/tests/unit/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/distributed copying build/lib/tests/unit/distributed/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/distributed copying build/lib/tests/unit/distributed/test_transaction.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/distributed creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/rnaseq copying build/lib/tests/unit/rnaseq/test_ericscript.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/rnaseq copying build/lib/tests/unit/rnaseq/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/rnaseq copying build/lib/tests/unit/data.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit copying build/lib/tests/unit/conftest.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/ngsalign copying build/lib/tests/unit/ngsalign/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/ngsalign creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration copying build/lib/tests/integration/test_pipeline.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration copying build/lib/tests/integration/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration copying build/lib/tests/integration/test_SequencingDump.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/rnaseq copying build/lib/tests/integration/rnaseq/test_ericscript.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/rnaseq copying build/lib/tests/integration/rnaseq/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/rnaseq copying build/lib/tests/integration/test_S3_pipelines.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration copying build/lib/tests/integration/test_automated_analysis.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bed copying build/lib/bcbio/bed/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bed creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/damage.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/coverage.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/chipseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/qsignature.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/srna.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/umi.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/samtools.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/kraken.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/preseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/multiqc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/fastqc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/atropos.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/viral.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/contamination.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/picard.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/qualimap.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc copying build/lib/bcbio/qc/variant.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server copying build/lib/bcbio/server/main.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server copying build/lib/bcbio/server/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server copying build/lib/bcbio/server/run.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server copying build/lib/bcbio/server/background.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad copying build/lib/bcbio/broad/picardrun.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad copying build/lib/bcbio/broad/metrics.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad copying build/lib/bcbio/broad/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/filesystem.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/galaxy.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/shared.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/s3.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/upload/irods.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload copying build/lib/bcbio/setpath.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/rnaseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/sra.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/region.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/fastq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/disambiguate copying build/lib/bcbio/pipeline/disambiguate/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/disambiguate copying build/lib/bcbio/pipeline/disambiguate/run.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/disambiguate copying build/lib/bcbio/pipeline/main.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/datadict.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/merge.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/shared.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/run_info.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/sample.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/archive.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/variation.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/config_utils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/tools.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/genome.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/cleanbam.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/qcsummary.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/version.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline copying build/lib/bcbio/pipeline/alignment.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/log copying build/lib/bcbio/log/logbook_zmqpush.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/log copying build/lib/bcbio/log/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/log creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard copying build/lib/bcbio/picard/metrics.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard copying build/lib/bcbio/picard/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard copying build/lib/bcbio/picard/utils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/system.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/programs.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/profile.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/diagnostics.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/versioncheck.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/do.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/provenance/data.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance copying build/lib/bcbio/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/resources.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/ipython.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/clusterk.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/multi.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/clargs.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/transaction.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/runfn.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/prun.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/split.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/ipythontasks.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/multitasks.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed copying build/lib/bcbio/distributed/objectstore.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/demultiplex.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/machine.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/flowcell.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/samplesheet.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina copying build/lib/bcbio/illumina/transfer.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hmmer copying build/lib/bcbio/hmmer/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hmmer copying build/lib/bcbio/hmmer/search.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hmmer creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow copying build/lib/bcbio/workflow/stormseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow copying build/lib/bcbio/workflow/template.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow copying build/lib/bcbio/workflow/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow copying build/lib/bcbio/workflow/xprize.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow copying build/lib/bcbio/install.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq copying build/lib/bcbio/chipseq/peaks.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq copying build/lib/bcbio/chipseq/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq copying build/lib/bcbio/chipseq/macs2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/loh.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/chromhacks.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/bubbletree.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/theta.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity copying build/lib/bcbio/heterogeneity/phylowgs.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/cpat.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/pizzly.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/bcbiornaseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/express.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/annotate_gtf.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/salmon.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/qc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/ericscript.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/singlecellexperiment.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/gtf.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/umi.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/rapmap.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/variation.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/dexseq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/sailfish.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/spikein.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/cufflinks.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/featureCounts.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/count.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/kallisto.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/oncofuse.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/rsem.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq copying build/lib/bcbio/rnaseq/stringtie.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/skewer.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/fastq.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/fasta.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/coverage.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/cram.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/ref.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/readstats.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/callable.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/counts.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam copying build/lib/bcbio/bam/trim.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/snap.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/hisat2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/postalign.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/bowtie.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/bbmap.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/minimap2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/novoalign.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/bwa.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/bowtie2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/mosaik.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/tophat.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/star.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/rtg.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign copying build/lib/bcbio/ngsalign/alignprep.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy copying build/lib/bcbio/galaxy/api.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy copying build/lib/bcbio/galaxy/nglims.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy copying build/lib/bcbio/galaxy/loc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy copying build/lib/bcbio/galaxy/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/mirdeep.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/group.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/mirge.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/qc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/sample.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/srna/umis.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna copying build/lib/bcbio/utils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla copying build/lib/bcbio/hla/bwakit.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla copying build/lib/bcbio/hla/groups.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla copying build/lib/bcbio/hla/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla copying build/lib/bcbio/hla/optitype.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/inspect.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/create.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/tool.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/main.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/workflow.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/hpc.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/defs.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl copying build/lib/bcbio/cwl/cwlutils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/purple.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/seq2c.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/gatkcnv.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/validate.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/delly.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/pindel.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/plot.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/manta.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/shared.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/prioritize.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/regions.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/cn_mops.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/purecn.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/cnvkit.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/wham.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/titancna.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/metasv.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/annotate.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/battenberg.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/hydra.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/lumpy.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/convert.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural copying build/lib/bcbio/structural/gridss.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-scrb-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/dropseq-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/10x_v2-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/icell8-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/icell8-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v2-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/surecell-cb3.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-scrb-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/surecell-cb1.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/surecell-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/10x_v2-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v3-transform.json -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis copying build/lib/bcbio/data/umis/surecell-cb2.txt.gz -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/data/umis creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/gatkfilter.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/sentieon.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/vfilter.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/annotation.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/deepvariant.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/pisces.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/genotype.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/damage.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/validate.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/effects.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/naming.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/coverage.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/multi.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/validateplot.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/ploidy.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/prioritize.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/gatk.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/peddy.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/smcounter2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/samtools.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/scalpel.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/gatkjoint.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/strelka2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/ensemble.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/germline.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/vardict.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/vcfutils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/mutect2.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/qsnp.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/realign.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/octopus.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/split.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/freebayes.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/bedutils.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/varscan.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/normalize.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/population.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/joint.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/platypus.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/vcfanno.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/bamprep.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/recalibrate.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/cortex.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation copying build/lib/bcbio/variation/mutect.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph copying build/lib/bcbio/graph/collectl.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph copying build/lib/bcbio/graph/__init__.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph copying build/lib/bcbio/graph/graph.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/test_alignprep.py to test_alignprep.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/upload/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/upload/test_upload.py to test_upload.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline/test_datadict.py to test_datadict.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/pipeline/test_rnaseq.py to test_rnaseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/distributed/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/distributed/test_transaction.py to test_transaction.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/rnaseq/test_ericscript.py to test_ericscript.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/rnaseq/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/data.py to data.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/conftest.py to conftest.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/unit/ngsalign/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/test_pipeline.py to test_pipeline.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/test_SequencingDump.py to test_SequencingDump.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/rnaseq/test_ericscript.py to test_ericscript.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/rnaseq/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/test_S3_pipelines.py to test_S3_pipelines.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/tests/integration/test_automated_analysis.py to test_automated_analysis.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bed/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/damage.py to damage.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/coverage.py to coverage.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/chipseq.py to chipseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/qsignature.py to qsignature.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/srna.py to srna.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/umi.py to umi.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/samtools.py to samtools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/kraken.py to kraken.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/preseq.py to preseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/multiqc.py to multiqc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/fastqc.py to fastqc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/atropos.py to atropos.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/viral.py to viral.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/contamination.py to contamination.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/picard.py to picard.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/qualimap.py to qualimap.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/qc/variant.py to variant.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server/main.py to main.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server/run.py to run.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/server/background.py to background.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad/picardrun.py to picardrun.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad/metrics.py to metrics.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/broad/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/filesystem.py to filesystem.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/galaxy.py to galaxy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/shared.py to shared.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/s3.py to s3.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/upload/irods.py to irods.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/setpath.py to setpath.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/rnaseq.py to rnaseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/sra.py to sra.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/region.py to region.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/fastq.py to fastq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/disambiguate/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/disambiguate/run.py to run.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/main.py to main.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/datadict.py to datadict.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/merge.py to merge.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/shared.py to shared.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/run_info.py to run_info.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/sample.py to sample.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/archive.py to archive.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/variation.py to variation.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/config_utils.py to config_utils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/tools.py to tools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/genome.py to genome.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/cleanbam.py to cleanbam.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/qcsummary.py to qcsummary.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/version.py to version.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/pipeline/alignment.py to alignment.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/log/logbook_zmqpush.py to logbook_zmqpush.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/log/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard/metrics.py to metrics.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/picard/utils.py to utils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/system.py to system.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/programs.py to programs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/profile.py to profile.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/diagnostics.py to diagnostics.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/versioncheck.py to versioncheck.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/do.py to do.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/provenance/data.py to data.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/resources.py to resources.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/ipython.py to ipython.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/clusterk.py to clusterk.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/multi.py to multi.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/clargs.py to clargs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/transaction.py to transaction.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/runfn.py to runfn.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/prun.py to prun.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/split.py to split.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/ipythontasks.py to ipythontasks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/multitasks.py to multitasks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/distributed/objectstore.py to objectstore.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/demultiplex.py to demultiplex.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/machine.py to machine.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/flowcell.py to flowcell.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/samplesheet.py to samplesheet.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/illumina/transfer.py to transfer.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hmmer/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hmmer/search.py to search.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow/stormseq.py to stormseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow/template.py to template.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/workflow/xprize.py to xprize.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/install.py to install.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq/peaks.py to peaks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/chipseq/macs2.py to macs2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py to loh.cpython-39.pyc /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="? byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/chromhacks.py to chromhacks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/bubbletree.py to bubbletree.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/theta.py to theta.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/heterogeneity/phylowgs.py to phylowgs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/cpat.py to cpat.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/pizzly.py to pizzly.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/bcbiornaseq.py to bcbiornaseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/express.py to express.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/annotate_gtf.py to annotate_gtf.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/salmon.py to salmon.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/qc.py to qc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/ericscript.py to ericscript.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/singlecellexperiment.py to singlecellexperiment.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/gtf.py to gtf.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/umi.py to umi.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/rapmap.py to rapmap.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/variation.py to variation.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/dexseq.py to dexseq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/sailfish.py to sailfish.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/spikein.py to spikein.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/cufflinks.py to cufflinks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/featureCounts.py to featureCounts.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/count.py to count.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/kallisto.py to kallisto.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/oncofuse.py to oncofuse.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/rsem.py to rsem.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/rnaseq/stringtie.py to stringtie.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/skewer.py to skewer.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/fastq.py to fastq.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/fasta.py to fasta.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/coverage.py to coverage.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/cram.py to cram.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/ref.py to ref.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/readstats.py to readstats.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/callable.py to callable.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/counts.py to counts.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/bam/trim.py to trim.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/snap.py to snap.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/hisat2.py to hisat2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/postalign.py to postalign.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/bowtie.py to bowtie.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/bbmap.py to bbmap.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/minimap2.py to minimap2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/novoalign.py to novoalign.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/bwa.py to bwa.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/bowtie2.py to bowtie2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/mosaik.py to mosaik.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/tophat.py to tophat.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/star.py to star.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/rtg.py to rtg.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/ngsalign/alignprep.py to alignprep.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy/api.py to api.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy/nglims.py to nglims.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy/loc.py to loc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/galaxy/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/mirdeep.py to mirdeep.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/group.py to group.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/mirge.py to mirge.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/qc.py to qc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/sample.py to sample.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/srna/umis.py to umis.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/utils.py to utils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla/bwakit.py to bwakit.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla/groups.py to groups.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/hla/optitype.py to optitype.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/inspect.py to inspect.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/create.py to create.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/tool.py to tool.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/main.py to main.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/workflow.py to workflow.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/hpc.py to hpc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/defs.py to defs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/cwl/cwlutils.py to cwlutils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/purple.py to purple.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/seq2c.py to seq2c.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/gatkcnv.py to gatkcnv.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/validate.py to validate.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/delly.py to delly.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/pindel.py to pindel.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/plot.py to plot.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/manta.py to manta.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/shared.py to shared.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/prioritize.py to prioritize.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/regions.py to regions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/cn_mops.py to cn_mops.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/purecn.py to purecn.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/cnvkit.py to cnvkit.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/wham.py to wham.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/titancna.py to titancna.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/metasv.py to metasv.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/annotate.py to annotate.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/battenberg.py to battenberg.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/hydra.py to hydra.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/lumpy.py to lumpy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/convert.py to convert.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/structural/gridss.py to gridss.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/gatkfilter.py to gatkfilter.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/sentieon.py to sentieon.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/vfilter.py to vfilter.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/annotation.py to annotation.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/deepvariant.py to deepvariant.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/pisces.py to pisces.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/genotype.py to genotype.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/damage.py to damage.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/validate.py to validate.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/effects.py to effects.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/naming.py to naming.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/coverage.py to coverage.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/multi.py to multi.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/validateplot.py to validateplot.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/ploidy.py to ploidy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/prioritize.py to prioritize.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/gatk.py to gatk.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/peddy.py to peddy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/smcounter2.py to smcounter2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/samtools.py to samtools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/scalpel.py to scalpel.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/gatkjoint.py to gatkjoint.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/strelka2.py to strelka2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/ensemble.py to ensemble.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/germline.py to germline.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/vardict.py to vardict.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/vcfutils.py to vcfutils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/mutect2.py to mutect2.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/qsnp.py to qsnp.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/realign.py to realign.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/octopus.py to octopus.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/split.py to split.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/freebayes.py to freebayes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/bedutils.py to bedutils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/varscan.py to varscan.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/normalize.py to normalize.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/population.py to population.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/joint.py to joint.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/platypus.py to platypus.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/vcfanno.py to vcfanno.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/bamprep.py to bamprep.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/recalibrate.py to recalibrate.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/cortex.py to cortex.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/variation/mutect.py to mutect.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph/collectl.py to collectl.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio/graph/graph.py to graph.cpython-39.pyc writing byte-compilation script '/tmp/tmpajdselr4.py' /usr/bin/python3 /tmp/tmpajdselr4.py /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="? removing /tmp/tmpajdselr4.py running install_egg_info running egg_info writing bcbio_nextgen.egg-info/PKG-INFO writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt writing top-level names to bcbio_nextgen.egg-info/top_level.txt reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'config/*.ini' adding license file 'LICENSE.txt' writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' Copying bcbio_nextgen.egg-info to /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9/site-packages/bcbio_nextgen-1.1.5-py3.9.egg-info running install_scripts creating /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin copying build/scripts-3.9/bcbio_prepare_samples.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin copying build/scripts-3.9/cwltool2wdl.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin copying build/scripts-3.9/bcbio_fastq_umi_prep.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin copying build/scripts-3.9/bcbio_setup_genome.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin copying build/scripts-3.9/bcbio_nextgen.py -> /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin changing mode of /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin/bcbio_prepare_samples.py to 755 changing mode of /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin/cwltool2wdl.py to 755 changing mode of /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin/bcbio_fastq_umi_prep.py to 755 changing mode of /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin/bcbio_setup_genome.py to 755 changing mode of /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/bin/bcbio_nextgen.py to 755 + install -d -m755 /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64//usr/share/doc/python-bcbio-nextgen + '[' -d doc ']' ~/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 ~/build/BUILD/bcbio-nextgen-1.1.5 + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + pushd /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' ~/build/BUILD/bcbio-nextgen-1.1.5 + popd + mv /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/filelist.lst . + mv /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 1.1.5-1 --unique-debug-suffix -1.1.5-1.aarch64 --unique-debug-src-base python-bcbio-nextgen-1.1.5-1.aarch64 -S debugsourcefiles.list /builddir/build/BUILD/bcbio-nextgen-1.1.5 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64/usr/lib/python3.9 using /usr/bin/python3.9 /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:321: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/bcbio/heterogeneity/loh.py:352: SyntaxWarning: "is not" with a literal. Did you mean "!="? + /usr/lib/rpm/brp-python-hardlink Processing files: python3-bcbio-nextgen-1.1.5-1.noarch Provides: python-bcbio-nextgen python3-bcbio-nextgen = 1.1.5-1 python3.9dist(bcbio-nextgen) = 1.1.5 python3dist(bcbio-nextgen) = 1.1.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 Processing files: python-bcbio-nextgen-help-1.1.5-1.noarch warning: Empty %files file /builddir/build/BUILD/bcbio-nextgen-1.1.5/doclist.lst Provides: python-bcbio-nextgen-help = 1.1.5-1 python3-bcbio-nextgen-doc Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 Wrote: /builddir/build/RPMS/python-bcbio-nextgen-help-1.1.5-1.noarch.rpm Wrote: /builddir/build/RPMS/python3-bcbio-nextgen-1.1.5-1.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.LYDdT2 + umask 022 + cd /builddir/build/BUILD + cd bcbio-nextgen-1.1.5 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-bcbio-nextgen-1.1.5-1.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0