%global _empty_manifest_terminate_build 0 Name: python-airpg Version: 1.1.4 Release: 1 Summary: A package to automatically access the inverted repeats of archived plastid genomes License: GPLv3 URL: https://github.com/michaelgruenstaeudl/airpg Source0: https://mirrors.aliyun.com/pypi/web/packages/30/24/14b2fcc1d3e9ad96632cd7348c4428faa5f7d422ae09bc1ac5dbbdeb5218/airpg-1.1.4.tar.gz BuildArch: noarch Requires: python3-biopython Requires: python3-ete3 Requires: python3-entrezpy Requires: python3-pandas Requires: python3-fuzzywuzzy Requires: python3-coloredlogs Requires: python3-Levenshtein %description [![Build Status](https://travis-ci.com/michaelgruenstaeudl/airpg.svg?branch=master)](https://travis-ci.com/michaelgruenstaeudl/airpg) [![PyPI status](https://img.shields.io/pypi/status/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI version shields.io](https://img.shields.io/pypi/v/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI license](https://img.shields.io/pypi/l/airpg.svg)](https://pypi.python.org/pypi/airpg/) A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide ## INSTALLATION To get the most recent stable version of *airpg*, run: pip install airpg Or, alternatively, if you want to get the latest development version of *airpg*, run: pip install git+https://github.com/michaelgruenstaeudl/airpg.git ## EXAMPLE USAGE ### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days. ### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month. ### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ## CHANGELOG See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software. %package -n python3-airpg Summary: A package to automatically access the inverted repeats of archived plastid genomes Provides: python-airpg BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-airpg [![Build Status](https://travis-ci.com/michaelgruenstaeudl/airpg.svg?branch=master)](https://travis-ci.com/michaelgruenstaeudl/airpg) [![PyPI status](https://img.shields.io/pypi/status/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI version shields.io](https://img.shields.io/pypi/v/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI license](https://img.shields.io/pypi/l/airpg.svg)](https://pypi.python.org/pypi/airpg/) A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide ## INSTALLATION To get the most recent stable version of *airpg*, run: pip install airpg Or, alternatively, if you want to get the latest development version of *airpg*, run: pip install git+https://github.com/michaelgruenstaeudl/airpg.git ## EXAMPLE USAGE ### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days. ### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month. ### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ## CHANGELOG See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software. %package help Summary: Development documents and examples for airpg Provides: python3-airpg-doc %description help [![Build Status](https://travis-ci.com/michaelgruenstaeudl/airpg.svg?branch=master)](https://travis-ci.com/michaelgruenstaeudl/airpg) [![PyPI status](https://img.shields.io/pypi/status/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI version shields.io](https://img.shields.io/pypi/v/airpg.svg)](https://pypi.python.org/pypi/airpg/) [![PyPI license](https://img.shields.io/pypi/l/airpg.svg)](https://pypi.python.org/pypi/airpg/) A Python package for automatically accessing the inverted repeats of thousands of plastid genomes stored on NCBI Nucleotide ## INSTALLATION To get the most recent stable version of *airpg*, run: pip install airpg Or, alternatively, if you want to get the latest development version of *airpg*, run: pip install git+https://github.com/michaelgruenstaeudl/airpg.git ## EXAMPLE USAGE ### [Tutorial 1](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial1.md): Very short survey (runtime ca. 5 min.; for the impatient) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the past 10 days. ### [Tutorial 2](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial2.md): Short survey (runtime ca. 15 min.; for testing) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide within the current month. ### [Tutorial 3](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial3.md): Medium survey (runtime ca. 5 hours) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide in 2019 only. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ### [Tutorial 4](https://github.com/michaelgruenstaeudl/airpg/tree/main/airpg/tutorials/tutorial4.md): Full survey (runtime ca. 19 hours; with explanations) Survey of all plastid genomes of flowering plants submitted to NCBI Nucleotide from January 2000 until, and including, December 2020. Note: The results of this survey are available on Zenodo via DOI [10.5281/zenodo.4335906](https://zenodo.org/record/4335906) ## CHANGELOG See [`CHANGELOG.md`](CHANGELOG.md) for a list of recent changes to the software. %prep %autosetup -n airpg-1.1.4 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-airpg -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Fri Jun 09 2023 Python_Bot - 1.1.4-1 - Package Spec generated