%global _empty_manifest_terminate_build 0 Name: python-biobb-pmx Version: 3.8.1 Release: 1 Summary: Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. License: Apache Software License URL: https://github.com/bioexcel/biobb_pmx Source0: https://mirrors.aliyun.com/pypi/web/packages/4c/bf/0cd5c2f2adf3995be6e0df092e2db4a06fae039756be1c076d734d249409/biobb_pmx-3.8.1.tar.gz BuildArch: noarch Requires: python3-biobb-common %description [![](https://readthedocs.org/projects/biobb-pmx/badge/?version=latest)](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/badge/docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) # biobb_pmx ### Introduction Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). ### Version v3.8.1 2022.3 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. * Installation: pip install "biobb_pmx>=3.8.1" * Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_pmx>=3.8.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 * Usage: docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 [//]: # (Using SINGULARITY:) [//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) [//]: # (* Installation:) [//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) [//]: # (* Usage:) [//]: # (singularity exec biobb_pmx.sif ) The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %package -n python3-biobb-pmx Summary: Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. Provides: python-biobb-pmx BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-biobb-pmx [![](https://readthedocs.org/projects/biobb-pmx/badge/?version=latest)](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/badge/docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) # biobb_pmx ### Introduction Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). ### Version v3.8.1 2022.3 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. * Installation: pip install "biobb_pmx>=3.8.1" * Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_pmx>=3.8.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 * Usage: docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 [//]: # (Using SINGULARITY:) [//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) [//]: # (* Installation:) [//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) [//]: # (* Usage:) [//]: # (singularity exec biobb_pmx.sif ) The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %package help Summary: Development documents and examples for biobb-pmx Provides: python3-biobb-pmx-doc %description help [![](https://readthedocs.org/projects/biobb-pmx/badge/?version=latest)](https://biobb-pmx.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/badge/docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) # biobb_pmx ### Introduction Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_pmx.readthedocs.io/en/latest/). ### Version v3.8.1 2022.3 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA or DOCKER. * Installation: pip install "biobb_pmx>=3.8.1" * Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_pmx>=3.8.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 * Usage: docker run quay.io/biocontainers/biobb_pmx:3.8.1--pyhdfd78af_0 [//]: # (Using SINGULARITY:) [//]: # (**MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system.) [//]: # (* Installation:) [//]: # (singularity pull --name biobb_pmx.sif shub://bioexcel/biobb_pmx) [//]: # (* Usage:) [//]: # (singularity exec biobb_pmx.sif ) The command list and specification can be found at the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2021 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2021 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %prep %autosetup -n biobb_pmx-3.8.1 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-biobb-pmx -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue Jun 20 2023 Python_Bot - 3.8.1-1 - Package Spec generated