%global _empty_manifest_terminate_build 0
Name:		python-pysam
Version:	0.21.0
Release:	1
Summary:	pysam - a python module for reading, manipulating and writing genomic data sets.
License:	MIT License
URL:		https://github.com/pysam-developers/pysam
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/16/1c/a4999d93d6fd7791349f0822e1674b39971fe30d3b99638209ae6de3dfc7/pysam-0.21.0.tar.gz
BuildArch:	noarch

Requires:	python3-cython

%description
pysam - a python module for reading, manipulating and writing
genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides
facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
files as well as access to the command line functionality of the
samtools and bcftools packages. The module supports compression and
random access through indexing.

This module provides a low-level wrapper around the htslib C-API as
using cython and a high-level API for convenient access to the data
within standard genomic file formats.

See:
http://www.htslib.org
https://github.com/pysam-developers/pysam
http://pysam.readthedocs.org/en/stable



%package -n python3-pysam
Summary:	pysam - a python module for reading, manipulating and writing genomic data sets.
Provides:	python-pysam
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-pysam
pysam - a python module for reading, manipulating and writing
genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides
facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
files as well as access to the command line functionality of the
samtools and bcftools packages. The module supports compression and
random access through indexing.

This module provides a low-level wrapper around the htslib C-API as
using cython and a high-level API for convenient access to the data
within standard genomic file formats.

See:
http://www.htslib.org
https://github.com/pysam-developers/pysam
http://pysam.readthedocs.org/en/stable



%package help
Summary:	Development documents and examples for pysam
Provides:	python3-pysam-doc
%description help
pysam - a python module for reading, manipulating and writing
genomic data sets.

pysam is a lightweight wrapper of the htslib C-API and provides
facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ
files as well as access to the command line functionality of the
samtools and bcftools packages. The module supports compression and
random access through indexing.

This module provides a low-level wrapper around the htslib C-API as
using cython and a high-level API for convenient access to the data
within standard genomic file formats.

See:
http://www.htslib.org
https://github.com/pysam-developers/pysam
http://pysam.readthedocs.org/en/stable



%prep
%autosetup -n pysam-0.21.0

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-pysam -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.21.0-1
- Package Spec generated