%global _empty_manifest_terminate_build 0 Name: python-biotite Version: 0.36.1 Release: 1 Summary: A comprehensive library for computational molecular biology License: BSD 3-Clause License -------------------- Copyright 2017 - 2021, The Biotite contributors All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. URL: https://www.biotite-python.org Source0: https://mirrors.nju.edu.cn/pypi/web/packages/4c/5a/4bdcb6edc1679a1bd9b01e8fed2118494c53498a0e2c240274645b873d68/biotite-0.36.1.tar.gz Requires: python3-requests Requires: python3-numpy Requires: python3-msgpack Requires: python3-networkx Requires: python3-pytest %description *Biotite* is your Swiss army knife for bioinformatics. Whether you want to identify homologous sequence regions in a protein family or you would like to find disulfide bonds in a protein structure: *Biotite* has the right tool for you. This package bundles popular tasks in computational molecular biology into a uniform *Python* library. It can handle a major part of the typical workflow for sequence and biomolecular structure data: - Searching and fetching data from biological databases - Reading and writing popular sequence/structure file formats - Analyzing and editing sequence/structure data - Visualizing sequence/structure data - Interfacing external applications for further analysis *Biotite* internally stores most of the data as *NumPy* `ndarray` objects, enabling - fast C-accelerated analysis, - intuitive usability through *NumPy*-like indexing syntax, - extensibility through direct access of the internal *NumPy* arrays. As a result the user can skip writing code for basic functionality (like file parsers) and can focus on what their code makes unique - from small analysis scripts to entire bioinformatics software packages. If you use *Biotite* in a scientific publication, please cite: | Kunzmann, P. & Hamacher, K. BMC Bioinformatics (2018) 19:346. | ``_ %package -n python3-biotite Summary: A comprehensive library for computational molecular biology Provides: python-biotite BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip BuildRequires: python3-cffi BuildRequires: gcc BuildRequires: gdb %description -n python3-biotite *Biotite* is your Swiss army knife for bioinformatics. Whether you want to identify homologous sequence regions in a protein family or you would like to find disulfide bonds in a protein structure: *Biotite* has the right tool for you. This package bundles popular tasks in computational molecular biology into a uniform *Python* library. It can handle a major part of the typical workflow for sequence and biomolecular structure data: - Searching and fetching data from biological databases - Reading and writing popular sequence/structure file formats - Analyzing and editing sequence/structure data - Visualizing sequence/structure data - Interfacing external applications for further analysis *Biotite* internally stores most of the data as *NumPy* `ndarray` objects, enabling - fast C-accelerated analysis, - intuitive usability through *NumPy*-like indexing syntax, - extensibility through direct access of the internal *NumPy* arrays. As a result the user can skip writing code for basic functionality (like file parsers) and can focus on what their code makes unique - from small analysis scripts to entire bioinformatics software packages. If you use *Biotite* in a scientific publication, please cite: | Kunzmann, P. & Hamacher, K. BMC Bioinformatics (2018) 19:346. | ``_ %package help Summary: Development documents and examples for biotite Provides: python3-biotite-doc %description help *Biotite* is your Swiss army knife for bioinformatics. Whether you want to identify homologous sequence regions in a protein family or you would like to find disulfide bonds in a protein structure: *Biotite* has the right tool for you. This package bundles popular tasks in computational molecular biology into a uniform *Python* library. It can handle a major part of the typical workflow for sequence and biomolecular structure data: - Searching and fetching data from biological databases - Reading and writing popular sequence/structure file formats - Analyzing and editing sequence/structure data - Visualizing sequence/structure data - Interfacing external applications for further analysis *Biotite* internally stores most of the data as *NumPy* `ndarray` objects, enabling - fast C-accelerated analysis, - intuitive usability through *NumPy*-like indexing syntax, - extensibility through direct access of the internal *NumPy* arrays. As a result the user can skip writing code for basic functionality (like file parsers) and can focus on what their code makes unique - from small analysis scripts to entire bioinformatics software packages. If you use *Biotite* in a scientific publication, please cite: | Kunzmann, P. & Hamacher, K. BMC Bioinformatics (2018) 19:346. | ``_ %prep %autosetup -n biotite-0.36.1 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-biotite -f filelist.lst %dir %{python3_sitearch}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue Apr 25 2023 Python_Bot - 0.36.1-1 - Package Spec generated