%global _empty_manifest_terminate_build 0
Name:		python-strainge
Version:	1.3.7
Release:	1
Summary:	Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
License:	BSD License
URL:		https://pypi.org/project/strainge/
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/3e/fd/4fe70e14f214b19ef8b70ad8dc60a9238f8e450f41774b938e197aca68b4/strainge-1.3.7.tar.gz
BuildArch:	noarch

Requires:	python3-numpy
Requires:	python3-scipy
Requires:	python3-h5py
Requires:	python3-intervaltree
Requires:	python3-matplotlib
Requires:	python3-scikit-bio
Requires:	python3-scikit-learn
Requires:	python3-pysam

%description
StrainGE is a set of tools to analyse the within-species strain diversity in 
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[![Documentation Status](https://readthedocs.org/projects/strainge/badge/?version=latest)](https://strainge.readthedocs.io/en/latest/?badge=latest)
[![Python Package Index](https://img.shields.io/pypi/v/strainge)](https://pypi.org/project/strainge)
[![DOI](https://zenodo.org/badge/71356920.svg)](https://zenodo.org/badge/latestdoi/71356920)

%package -n python3-strainge
Summary:	Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.
Provides:	python-strainge
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-strainge
StrainGE is a set of tools to analyse the within-species strain diversity in 
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[![Documentation Status](https://readthedocs.org/projects/strainge/badge/?version=latest)](https://strainge.readthedocs.io/en/latest/?badge=latest)
[![Python Package Index](https://img.shields.io/pypi/v/strainge)](https://pypi.org/project/strainge)
[![DOI](https://zenodo.org/badge/71356920.svg)](https://zenodo.org/badge/latestdoi/71356920)

%package help
Summary:	Development documents and examples for strainge
Provides:	python3-strainge-doc
%description help
StrainGE is a set of tools to analyse the within-species strain diversity in 
bacterial populations. It consists of two main components: 1) StrainGST: Strain
Genome Search tool, a tool to find close reference genomes for strains present
in a sample and 2) StrainGR: Strain Genome Recovery, a tool to perform
strain-aware variant calling at low coverages.
[![Documentation Status](https://readthedocs.org/projects/strainge/badge/?version=latest)](https://strainge.readthedocs.io/en/latest/?badge=latest)
[![Python Package Index](https://img.shields.io/pypi/v/strainge)](https://pypi.org/project/strainge)
[![DOI](https://zenodo.org/badge/71356920.svg)](https://zenodo.org/badge/latestdoi/71356920)

%prep
%autosetup -n strainge-1.3.7

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-strainge -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 1.3.7-1
- Package Spec generated