Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686396416.905632/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-phylopypruner-1.2.6-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686396416.905632/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-phylopypruner-1.2.6-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686396416.905632/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-phylopypruner.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ByNQyH + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf phylopypruner-1.2.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/phylopypruner-1.2.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd phylopypruner-1.2.6 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.xQ9CAk + umask 022 + cd /builddir/build/BUILD + cd phylopypruner-1.2.6 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/phylopypruner copying phylopypruner/fasta.py -> build/lib/phylopypruner copying phylopypruner/filtering.py -> build/lib/phylopypruner copying phylopypruner/gene_partition.py -> build/lib/phylopypruner copying phylopypruner/taxonomic_groups.py -> build/lib/phylopypruner copying phylopypruner/msa.py -> build/lib/phylopypruner copying phylopypruner/summary.py -> build/lib/phylopypruner copying phylopypruner/report.py -> build/lib/phylopypruner copying phylopypruner/mask_monophylies.py -> build/lib/phylopypruner copying phylopypruner/settings.py -> build/lib/phylopypruner copying phylopypruner/decontamination.py -> build/lib/phylopypruner copying phylopypruner/log.py -> build/lib/phylopypruner copying phylopypruner/plot.py -> build/lib/phylopypruner copying phylopypruner/prune_paralogs.py -> build/lib/phylopypruner copying phylopypruner/tree_node.py -> build/lib/phylopypruner copying phylopypruner/__main__.py -> build/lib/phylopypruner copying phylopypruner/run.py -> build/lib/phylopypruner copying phylopypruner/supermatrix.py -> build/lib/phylopypruner copying phylopypruner/root.py -> build/lib/phylopypruner copying phylopypruner/newick.py -> build/lib/phylopypruner copying phylopypruner/sequence.py -> build/lib/phylopypruner copying phylopypruner/__init__.py -> build/lib/phylopypruner copying phylopypruner/tree_stats.py -> build/lib/phylopypruner + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JFPJ5d + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 + cd phylopypruner-1.2.6 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr creating /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib creating /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/fasta.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/filtering.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/gene_partition.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/taxonomic_groups.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/msa.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/summary.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/report.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/mask_monophylies.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/settings.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/decontamination.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/log.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/plot.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/prune_paralogs.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/tree_node.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/__main__.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/run.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/supermatrix.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/root.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/newick.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/sequence.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/__init__.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner copying build/lib/phylopypruner/tree_stats.py -> /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/fasta.py to fasta.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/filtering.py to filtering.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/gene_partition.py to gene_partition.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/taxonomic_groups.py to taxonomic_groups.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/msa.py to msa.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/summary.py to summary.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/report.py to report.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/mask_monophylies.py to mask_monophylies.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/settings.py to settings.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/decontamination.py to decontamination.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/log.py to log.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/plot.py to plot.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/prune_paralogs.py to prune_paralogs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/tree_node.py to tree_node.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/__main__.py to __main__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/run.py to run.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/supermatrix.py to supermatrix.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/root.py to root.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/newick.py to newick.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/sequence.py to sequence.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner/tree_stats.py to tree_stats.cpython-39.pyc writing byte-compilation script '/tmp/tmpgc40li7f.py' /usr/bin/python3 /tmp/tmpgc40li7f.py removing /tmp/tmpgc40li7f.py running install_egg_info running egg_info writing phylopypruner.egg-info/PKG-INFO writing dependency_links to phylopypruner.egg-info/dependency_links.txt writing entry points to phylopypruner.egg-info/entry_points.txt writing requirements to phylopypruner.egg-info/requires.txt writing top-level names to phylopypruner.egg-info/top_level.txt reading manifest file 'phylopypruner.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'phylopypruner.egg-info/SOURCES.txt' Copying phylopypruner.egg-info to /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9/site-packages/phylopypruner-1.2.6-py3.9.egg-info running install_scripts Installing phylopypruner script to /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/bin + install -d -m755 /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64//usr/share/doc/python-phylopypruner + '[' -d doc ']' + cp -arf doc /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64//usr/share/doc/python-phylopypruner + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + cp -arf examples /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64//usr/share/doc/python-phylopypruner + pushd /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 ~/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 ~/build/BUILD/phylopypruner-1.2.6 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' + popd ~/build/BUILD/phylopypruner-1.2.6 + mv /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/filelist.lst . + mv /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 1.2.6-1 --unique-debug-suffix -1.2.6-1.x86_64 --unique-debug-src-base python-phylopypruner-1.2.6-1.x86_64 -S debugsourcefiles.list /builddir/build/BUILD/phylopypruner-1.2.6 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink Processing files: python3-phylopypruner-1.2.6-1.noarch Provides: python-phylopypruner python3-phylopypruner = 1.2.6-1 python3.9dist(phylopypruner) = 1.2.6 python3dist(phylopypruner) = 1.2.6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 python3.9dist(setuptools) >= 30.3 python3.9dist(setuptools-scm) python3.9dist(wheel) Processing files: python-phylopypruner-help-1.2.6-1.noarch warning: Empty %files file /builddir/build/BUILD/phylopypruner-1.2.6/doclist.lst Provides: python-phylopypruner-help = 1.2.6-1 python3-phylopypruner-doc Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 Wrote: /builddir/build/RPMS/python3-phylopypruner-1.2.6-1.noarch.rpm Wrote: /builddir/build/RPMS/python-phylopypruner-help-1.2.6-1.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.TuF0S6 + umask 022 + cd /builddir/build/BUILD + cd phylopypruner-1.2.6 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-phylopypruner-1.2.6-1.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0