Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-lc7xne25/python-org-asm/python-org-asm.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-lc7xne25/python-org-asm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1686472511.921166 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.9.9, NVR = mock-3.5-1)... Start(bootstrap): init plugins INFO: selinux disabled Finish(bootstrap): init plugins Start: init plugins INFO: selinux disabled Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-lc7xne25/python-org-asm/python-org-asm.spec) Config(openeuler-22.03_LTS_SP1-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.8 MB/s | 63 MB 00:22 OS 2.4 MB/s | 3.4 MB 00:01 everything 11 MB/s | 16 MB 00:01 EPOL 2.6 MB/s | 3.8 MB 00:01 update 10 MB/s | 17 MB 00:01 EPOL update 150 kB/s | 186 kB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf-data noarch 4.14.0-13.oe2203sp1 update 23 k dnf-plugins-core noarch 4.3.1-2.oe2203sp1 OS 14 k Installing dependencies: attr x86_64 2.5.1-3.oe2203sp1 OS 55 k audit-libs x86_64 1:3.0.1-6.oe2203sp1 OS 98 k basesystem noarch 12-3.oe2203sp1 OS 7.0 k bash x86_64 5.1.8-6.oe2203sp1 OS 1.2 M bc x86_64 1.07.1-12.oe2203sp1 OS 88 k brotli x86_64 1.0.9-3.oe2203sp1 OS 316 k bzip2 x86_64 1.0.8-6.oe2203sp1 OS 66 k ca-certificates noarch 2021.2.52-2.oe2203sp1 OS 386 k chkconfig x86_64 1.21-1.oe2203sp1 OS 174 k coreutils x86_64 9.0-6.oe2203sp1 OS 2.7 M cracklib x86_64 2.9.8-1.oe2203sp1 OS 3.9 M crontabs noarch 1.11-23.oe2203sp1 OS 17 k crypto-policies noarch 20200619-3.git781bbd4.oe2203sp1 OS 81 k curl x86_64 7.79.1-17.oe2203sp1 update 142 k cyrus-sasl-lib x86_64 2.1.28-1.oe2203sp1 OS 72 k dbus-libs x86_64 1:1.12.20-8.oe2203sp1 OS 145 k dnf noarch 4.14.0-13.oe2203sp1 update 12 k e2fsprogs x86_64 1.46.4-17.oe2203sp1 OS 1.1 M elfutils x86_64 0.185-17.oe2203sp1 OS 599 k expat x86_64 2.4.1-8.oe2203sp1 OS 83 k file-libs x86_64 5.41-2.oe2203sp1 OS 661 k filesystem x86_64 3.16-5.oe2203sp1 OS 1.1 M fuse x86_64 2.9.9-11.oe2203sp1 OS 140 k fuse-common x86_64 3.10.5-5.oe2203sp1 OS 8.7 k gawk x86_64 5.1.1-3.oe2203sp1 OS 374 k gdbm x86_64 1:1.22-11.oe2203sp1 update 171 k glib2 x86_64 2.72.2-10.oe2203sp1 update 2.7 M glibc x86_64 2.34-112.oe2203sp1 update 3.0 M glibc-common x86_64 2.34-112.oe2203sp1 update 3.4 M gmp x86_64 1:6.2.1-2.oe2203sp1 OS 267 k gnupg2 x86_64 2.2.32-3.oe2203sp1 OS 2.2 M gpgme x86_64 1.16.0-2.oe2203sp1 OS 343 k grep x86_64 3.7-4.oe2203sp1 OS 301 k gzip x86_64 1.11-5.oe2203sp1 OS 108 k ima-evm-utils-libs x86_64 1.3.2-8.oe2203sp1 OS 18 k info x86_64 6.8-4.oe2203sp1 OS 172 k json-c x86_64 0.16-2.oe2203sp1 OS 38 k keyutils-libs x86_64 1.6.3-4.oe2203sp1 OS 25 k krb5-libs x86_64 1.19.2-6.oe2203sp1 OS 652 k libacl x86_64 2.3.1-2.oe2203sp1 OS 23 k libarchive x86_64 3.5.2-5.oe2203sp1 OS 338 k libassuan x86_64 2.5.5-2.oe2203sp1 OS 59 k libblkid x86_64 2.37.2-13.oe2203sp1 OS 142 k libcap x86_64 2.61-5.oe2203sp1 update 63 k libcap-ng x86_64 0.8.3-1.oe2203sp1 OS 44 k libcomps x86_64 0.1.18-2.oe2203sp1 OS 70 k libcurl x86_64 7.79.1-17.oe2203sp1 update 281 k libdnf x86_64 0.69.0-4.oe2203sp1 update 679 k libev x86_64 4.33-4.oe2203sp1 OS 49 k libevent x86_64 2.1.12-5.oe2203sp1 OS 234 k libffi x86_64 3.4.2-5.oe2203sp1 OS 28 k libgcc x86_64 10.3.1-22.oe2203sp1 update 75 k libgcrypt x86_64 1.9.4-3.oe2203sp1 OS 487 k libgomp x86_64 10.3.1-22.oe2203sp1 update 229 k libgpg-error x86_64 1.43-2.oe2203sp1 OS 270 k libidn2 x86_64 2.3.2-3.oe2203sp1 OS 112 k libksba x86_64 1.6.0-3.oe2203sp1 update 146 k libmodulemd x86_64 2.13.0-3.oe2203sp1 OS 173 k libmount x86_64 2.37.2-13.oe2203sp1 OS 165 k libnghttp2 x86_64 1.46.0-3.oe2203sp1 update 69 k libnsl2 x86_64 2.0.0-5.oe2203sp1 OS 28 k libpng x86_64 2:1.6.38-1.oe2203sp1 OS 105 k libpsl x86_64 0.21.1-5.oe2203sp1 OS 73 k libpwquality x86_64 1.4.4-4.oe2203sp1 OS 86 k librepo x86_64 1.14.2-4.oe2203sp1 OS 80 k libreport-filesystem noarch 2.15.2-2.oe2203sp1 OS 8.6 k libselinux x86_64 3.3-2.oe2203sp1 OS 111 k libsepol x86_64 3.3-4.oe2203sp1 OS 284 k libsigsegv x86_64 2.14-1.oe2203sp1 OS 43 k libsmartcols x86_64 2.37.2-13.oe2203sp1 OS 110 k libsolv x86_64 0.7.22-1.oe2203sp1 OS 388 k libssh x86_64 0.9.6-7.oe2203sp1 update 189 k libstdc++ x86_64 10.3.1-22.oe2203sp1 update 529 k libtasn1 x86_64 4.17.0-3.oe2203sp1 OS 79 k libtirpc x86_64 1.3.2-3.oe2203sp1 update 83 k libunistring x86_64 1.0-3.oe2203sp1 OS 446 k libuuid x86_64 2.37.2-13.oe2203sp1 OS 23 k libverto x86_64 0.3.2-2.oe2203sp1 OS 27 k libxcrypt x86_64 4.4.26-4.oe2203sp1 OS 117 k libxml2 x86_64 2.9.14-5.oe2203sp1 update 1.0 M libyaml x86_64 0.2.5-4.oe2203sp1 OS 57 k logrotate x86_64 3.20.1-1.oe2203sp1 OS 54 k lua x86_64 5.4.3-11.oe2203sp1 update 145 k lz4 x86_64 1.9.3-3.oe2203sp1 OS 109 k mpfr x86_64 4.1.0-2.oe2203sp1 OS 1.3 M ncurses x86_64 6.3-5.oe2203sp1 OS 679 k ncurses-base noarch 6.3-5.oe2203sp1 OS 54 k ncurses-libs x86_64 6.3-5.oe2203sp1 OS 287 k newt x86_64 0.52.21-9.oe2203sp1 update 97 k npth x86_64 1.6-3.oe2203sp1 OS 23 k openEuler-gpg-keys x86_64 1.0-3.5.oe2203sp1 OS 12 k openEuler-release x86_64 22.03LTS_SP1-56.oe2203sp1 OS 22 k openEuler-repos x86_64 1.0-3.5.oe2203sp1 OS 8.9 k openldap x86_64 2.6.0-6.oe2203sp1 update 220 k openssl-libs x86_64 1:1.1.1m-20.oe2203sp1 update 1.4 M p11-kit x86_64 0.24.0-2.oe2203sp1 OS 226 k p11-kit-trust x86_64 0.24.0-2.oe2203sp1 OS 123 k pam x86_64 1.5.2-6.oe2203sp1 update 438 k pcre x86_64 8.45-5.oe2203sp1 OS 465 k pcre2 x86_64 10.39-6.oe2203sp1 OS 597 k pkgconf x86_64 1.8.0-3.oe2203sp1 update 58 k popt x86_64 1.18-3.oe2203sp1 OS 50 k publicsuffix-list noarch 20211113-3.oe2203sp1 OS 128 k python-pip-wheel noarch 21.3.1-2.oe2203sp1 OS 1.5 M python-setuptools noarch 59.4.0-5.oe2203sp1 update 510 k python3 x86_64 3.9.9-24.oe2203sp1 update 8.0 M python3-dateutil noarch 1:2.8.2-3.oe2203sp1 OS 301 k python3-dbus x86_64 1.2.18-5.oe2203sp1 OS 122 k python3-distro noarch 1.6.0-2.oe2203sp1 OS 38 k python3-dnf noarch 4.14.0-13.oe2203sp1 update 444 k python3-dnf-plugins-core noarch 4.3.1-2.oe2203sp1 OS 227 k python3-gpgme x86_64 1.16.0-2.oe2203sp1 OS 250 k python3-hawkey x86_64 0.69.0-4.oe2203sp1 update 89 k python3-libcomps x86_64 0.1.18-2.oe2203sp1 OS 43 k python3-libdnf x86_64 0.69.0-4.oe2203sp1 update 719 k python3-rpm x86_64 4.17.0-22.oe2203sp1 OS 79 k python3-setuptools noarch 59.4.0-5.oe2203sp1 update 900 k python3-six noarch 1.16.0-2.oe2203sp1 OS 37 k readline x86_64 8.1-2.oe2203sp1 OS 152 k rpm x86_64 4.17.0-22.oe2203sp1 OS 492 k rpm-libs x86_64 4.17.0-22.oe2203sp1 OS 367 k sed x86_64 4.8-5.oe2203sp1 OS 166 k setup noarch 2.13.9.1-1.oe2203sp1 OS 151 k slang x86_64 2.3.2-9.oe2203sp1 OS 557 k sqlite x86_64 3.37.2-5.oe2203sp1 update 1.2 M systemd-libs x86_64 249-46.oe2203sp1 update 478 k tcl x86_64 1:8.6.12-4.oe2203sp1 OS 1.1 M tpm2-tss x86_64 3.1.0-3.oe2203sp1 update 575 k tzdata noarch 2022a-11.oe2203sp1 OS 428 k which x86_64 2.21-15.oe2203sp1 OS 30 k xz-libs x86_64 5.2.5-3.oe2203sp1 OS 82 k zlib x86_64 1.2.11-22.oe2203sp1 OS 88 k zstd x86_64 1.5.0-4.oe2203sp1 update 754 k Transaction Summary ================================================================================ Install 135 Packages Total download size: 60 M Installed size: 239 M Downloading Packages: (1/135): basesystem-12-3.oe2203sp1.noarch.rpm 60 kB/s | 7.0 kB 00:00 (2/135): attr-2.5.1-3.oe2203sp1.x86_64.rpm 283 kB/s | 55 kB 00:00 (3/135): audit-libs-3.0.1-6.oe2203sp1.x86_64.rp 501 kB/s | 98 kB 00:00 (4/135): bash-5.1.8-6.oe2203sp1.x86_64.rpm 5.5 MB/s | 1.2 MB 00:00 (5/135): bc-1.07.1-12.oe2203sp1.x86_64.rpm 609 kB/s | 88 kB 00:00 (6/135): brotli-1.0.9-3.oe2203sp1.x86_64.rpm 1.8 MB/s | 316 kB 00:00 (7/135): bzip2-1.0.8-6.oe2203sp1.x86_64.rpm 1.3 MB/s | 66 kB 00:00 (8/135): ca-certificates-2021.2.52-2.oe2203sp1. 7.1 MB/s | 386 kB 00:00 (9/135): chkconfig-1.21-1.oe2203sp1.x86_64.rpm 3.5 MB/s | 174 kB 00:00 (10/135): coreutils-9.0-6.oe2203sp1.x86_64.rpm 34 MB/s | 2.7 MB 00:00 (11/135): crontabs-1.11-23.oe2203sp1.noarch.rpm 242 kB/s | 17 kB 00:00 (12/135): cracklib-2.9.8-1.oe2203sp1.x86_64.rpm 32 MB/s | 3.9 MB 00:00 (13/135): crypto-policies-20200619-3.git781bbd4 1.8 MB/s | 81 kB 00:00 (14/135): cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86 1.9 MB/s | 72 kB 00:00 (15/135): dnf-plugins-core-4.3.1-2.oe2203sp1.no 364 kB/s | 14 kB 00:00 (16/135): dbus-libs-1.12.20-8.oe2203sp1.x86_64. 3.5 MB/s | 145 kB 00:00 (17/135): e2fsprogs-1.46.4-17.oe2203sp1.x86_64. 25 MB/s | 1.1 MB 00:00 (18/135): expat-2.4.1-8.oe2203sp1.x86_64.rpm 2.1 MB/s | 83 kB 00:00 (19/135): elfutils-0.185-17.oe2203sp1.x86_64.rp 13 MB/s | 599 kB 00:00 (20/135): file-libs-5.41-2.oe2203sp1.x86_64.rpm 15 MB/s | 661 kB 00:00 (21/135): filesystem-3.16-5.oe2203sp1.x86_64.rp 24 MB/s | 1.1 MB 00:00 (22/135): fuse-2.9.9-11.oe2203sp1.x86_64.rpm 3.5 MB/s | 140 kB 00:00 (23/135): fuse-common-3.10.5-5.oe2203sp1.x86_64 228 kB/s | 8.7 kB 00:00 (24/135): gawk-5.1.1-3.oe2203sp1.x86_64.rpm 9.2 MB/s | 374 kB 00:00 (25/135): gmp-6.2.1-2.oe2203sp1.x86_64.rpm 6.4 MB/s | 267 kB 00:00 (26/135): gnupg2-2.2.32-3.oe2203sp1.x86_64.rpm 42 MB/s | 2.2 MB 00:00 (27/135): gpgme-1.16.0-2.oe2203sp1.x86_64.rpm 8.4 MB/s | 343 kB 00:00 (28/135): grep-3.7-4.oe2203sp1.x86_64.rpm 7.2 MB/s | 301 kB 00:00 (29/135): gzip-1.11-5.oe2203sp1.x86_64.rpm 2.8 MB/s | 108 kB 00:00 (30/135): ima-evm-utils-libs-1.3.2-8.oe2203sp1. 496 kB/s | 18 kB 00:00 (31/135): info-6.8-4.oe2203sp1.x86_64.rpm 4.4 MB/s | 172 kB 00:00 (32/135): json-c-0.16-2.oe2203sp1.x86_64.rpm 1.0 MB/s | 38 kB 00:00 (33/135): keyutils-libs-1.6.3-4.oe2203sp1.x86_6 672 kB/s | 25 kB 00:00 (34/135): krb5-libs-1.19.2-6.oe2203sp1.x86_64.r 15 MB/s | 652 kB 00:00 (35/135): libacl-2.3.1-2.oe2203sp1.x86_64.rpm 595 kB/s | 23 kB 00:00 (36/135): libarchive-3.5.2-5.oe2203sp1.x86_64.r 8.3 MB/s | 338 kB 00:00 (37/135): libassuan-2.5.5-2.oe2203sp1.x86_64.rp 1.5 MB/s | 59 kB 00:00 (38/135): libblkid-2.37.2-13.oe2203sp1.x86_64.r 3.7 MB/s | 142 kB 00:00 (39/135): libcap-ng-0.8.3-1.oe2203sp1.x86_64.rp 1.2 MB/s | 44 kB 00:00 (40/135): libcomps-0.1.18-2.oe2203sp1.x86_64.rp 1.8 MB/s | 70 kB 00:00 (41/135): libev-4.33-4.oe2203sp1.x86_64.rpm 1.3 MB/s | 49 kB 00:00 (42/135): libevent-2.1.12-5.oe2203sp1.x86_64.rp 5.9 MB/s | 234 kB 00:00 (43/135): libffi-3.4.2-5.oe2203sp1.x86_64.rpm 772 kB/s | 28 kB 00:00 (44/135): libgcrypt-1.9.4-3.oe2203sp1.x86_64.rp 12 MB/s | 487 kB 00:00 (45/135): libgpg-error-1.43-2.oe2203sp1.x86_64. 6.8 MB/s | 270 kB 00:00 (46/135): libidn2-2.3.2-3.oe2203sp1.x86_64.rpm 2.9 MB/s | 112 kB 00:00 (47/135): libmodulemd-2.13.0-3.oe2203sp1.x86_64 4.4 MB/s | 173 kB 00:00 (48/135): libmount-2.37.2-13.oe2203sp1.x86_64.r 4.2 MB/s | 165 kB 00:00 (49/135): libnsl2-2.0.0-5.oe2203sp1.x86_64.rpm 761 kB/s | 28 kB 00:00 (50/135): libpng-1.6.38-1.oe2203sp1.x86_64.rpm 2.7 MB/s | 105 kB 00:00 (51/135): libpsl-0.21.1-5.oe2203sp1.x86_64.rpm 1.9 MB/s | 73 kB 00:00 (52/135): libpwquality-1.4.4-4.oe2203sp1.x86_64 2.2 MB/s | 86 kB 00:00 (53/135): librepo-1.14.2-4.oe2203sp1.x86_64.rpm 2.1 MB/s | 80 kB 00:00 (54/135): libreport-filesystem-2.15.2-2.oe2203s 234 kB/s | 8.6 kB 00:00 (55/135): libselinux-3.3-2.oe2203sp1.x86_64.rpm 2.9 MB/s | 111 kB 00:00 (56/135): libsepol-3.3-4.oe2203sp1.x86_64.rpm 7.0 MB/s | 284 kB 00:00 (57/135): libsigsegv-2.14-1.oe2203sp1.x86_64.rp 1.1 MB/s | 43 kB 00:00 (58/135): libsmartcols-2.37.2-13.oe2203sp1.x86_ 2.9 MB/s | 110 kB 00:00 (59/135): libsolv-0.7.22-1.oe2203sp1.x86_64.rpm 9.6 MB/s | 388 kB 00:00 (60/135): libtasn1-4.17.0-3.oe2203sp1.x86_64.rp 2.1 MB/s | 79 kB 00:00 (61/135): libunistring-1.0-3.oe2203sp1.x86_64.r 11 MB/s | 446 kB 00:00 (62/135): libuuid-2.37.2-13.oe2203sp1.x86_64.rp 630 kB/s | 23 kB 00:00 (63/135): libverto-0.3.2-2.oe2203sp1.x86_64.rpm 711 kB/s | 27 kB 00:00 (64/135): libxcrypt-4.4.26-4.oe2203sp1.x86_64.r 3.1 MB/s | 117 kB 00:00 (65/135): libyaml-0.2.5-4.oe2203sp1.x86_64.rpm 1.5 MB/s | 57 kB 00:00 (66/135): logrotate-3.20.1-1.oe2203sp1.x86_64.r 1.4 MB/s | 54 kB 00:00 (67/135): lz4-1.9.3-3.oe2203sp1.x86_64.rpm 2.8 MB/s | 109 kB 00:00 (68/135): mpfr-4.1.0-2.oe2203sp1.x86_64.rpm 29 MB/s | 1.3 MB 00:00 (69/135): ncurses-6.3-5.oe2203sp1.x86_64.rpm 16 MB/s | 679 kB 00:00 (70/135): ncurses-base-6.3-5.oe2203sp1.noarch.r 1.4 MB/s | 54 kB 00:00 (71/135): ncurses-libs-6.3-5.oe2203sp1.x86_64.r 6.8 MB/s | 287 kB 00:00 (72/135): npth-1.6-3.oe2203sp1.x86_64.rpm 595 kB/s | 23 kB 00:00 (73/135): openEuler-gpg-keys-1.0-3.5.oe2203sp1. 317 kB/s | 12 kB 00:00 (74/135): openEuler-release-22.03LTS_SP1-56.oe2 602 kB/s | 22 kB 00:00 (75/135): openEuler-repos-1.0-3.5.oe2203sp1.x86 241 kB/s | 8.9 kB 00:00 (76/135): p11-kit-0.24.0-2.oe2203sp1.x86_64.rpm 5.2 MB/s | 226 kB 00:00 (77/135): p11-kit-trust-0.24.0-2.oe2203sp1.x86_ 2.7 MB/s | 123 kB 00:00 (78/135): pcre-8.45-5.oe2203sp1.x86_64.rpm 9.8 MB/s | 465 kB 00:00 (79/135): pcre2-10.39-6.oe2203sp1.x86_64.rpm 14 MB/s | 597 kB 00:00 (80/135): popt-1.18-3.oe2203sp1.x86_64.rpm 1.3 MB/s | 50 kB 00:00 (81/135): publicsuffix-list-20211113-3.oe2203sp 3.3 MB/s | 128 kB 00:00 (82/135): python-pip-wheel-21.3.1-2.oe2203sp1.n 30 MB/s | 1.5 MB 00:00 (83/135): python3-dateutil-2.8.2-3.oe2203sp1.no 7.4 MB/s | 301 kB 00:00 (84/135): python3-dbus-1.2.18-5.oe2203sp1.x86_6 3.1 MB/s | 122 kB 00:00 (85/135): python3-distro-1.6.0-2.oe2203sp1.noar 1.0 MB/s | 38 kB 00:00 (86/135): python3-dnf-plugins-core-4.3.1-2.oe22 5.7 MB/s | 227 kB 00:00 (87/135): python3-gpgme-1.16.0-2.oe2203sp1.x86_ 5.9 MB/s | 250 kB 00:00 (88/135): python3-libcomps-0.1.18-2.oe2203sp1.x 1.1 MB/s | 43 kB 00:00 (89/135): python3-rpm-4.17.0-22.oe2203sp1.x86_6 2.0 MB/s | 79 kB 00:00 (90/135): python3-six-1.16.0-2.oe2203sp1.noarch 980 kB/s | 37 kB 00:00 (91/135): readline-8.1-2.oe2203sp1.x86_64.rpm 3.9 MB/s | 152 kB 00:00 (92/135): rpm-4.17.0-22.oe2203sp1.x86_64.rpm 11 MB/s | 492 kB 00:00 (93/135): rpm-libs-4.17.0-22.oe2203sp1.x86_64.r 8.2 MB/s | 367 kB 00:00 (94/135): sed-4.8-5.oe2203sp1.x86_64.rpm 4.0 MB/s | 166 kB 00:00 (95/135): setup-2.13.9.1-1.oe2203sp1.noarch.rpm 3.8 MB/s | 151 kB 00:00 (96/135): slang-2.3.2-9.oe2203sp1.x86_64.rpm 13 MB/s | 557 kB 00:00 (97/135): tcl-8.6.12-4.oe2203sp1.x86_64.rpm 24 MB/s | 1.1 MB 00:00 (98/135): tzdata-2022a-11.oe2203sp1.noarch.rpm 10 MB/s | 428 kB 00:00 (99/135): which-2.21-15.oe2203sp1.x86_64.rpm 817 kB/s | 30 kB 00:00 (100/135): xz-libs-5.2.5-3.oe2203sp1.x86_64.rpm 2.1 MB/s | 82 kB 00:00 (101/135): zlib-1.2.11-22.oe2203sp1.x86_64.rpm 2.2 MB/s | 88 kB 00:00 (102/135): curl-7.79.1-17.oe2203sp1.x86_64.rpm 3.5 MB/s | 142 kB 00:00 (103/135): dnf-4.14.0-13.oe2203sp1.noarch.rpm 323 kB/s | 12 kB 00:00 (104/135): dnf-data-4.14.0-13.oe2203sp1.noarch. 606 kB/s | 23 kB 00:00 (105/135): gdbm-1.22-11.oe2203sp1.x86_64.rpm 4.3 MB/s | 171 kB 00:00 (106/135): 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tpm2-tss-3.1.0-3.oe2203sp1.x86_64.rp 13 MB/s | 575 kB 00:00 (135/135): zstd-1.5.0-4.oe2203sp1.x86_64.rpm 17 MB/s | 754 kB 00:00 -------------------------------------------------------------------------------- Total 14 MB/s | 60 MB 00:04 OS 2.9 MB/s | 3.0 kB 00:00 Importing GPG key 0xB675600B: Userid : "openeuler " Fingerprint: 8AA1 6BF9 F2CA 5244 010D CA96 3B47 7C60 B675 600B From : /usr/share/distribution-gpg-keys/openeuler/RPM-GPG-KEY-openEuler-EulerMaker Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-5.oe2203sp1.x86_64 1/1 Preparing : 1/1 Installing : libgcc-10.3.1-22.oe2203sp1.x86_64 1/135 Running scriptlet: libgcc-10.3.1-22.oe2203sp1.x86_64 1/135 Installing : tzdata-2022a-11.oe2203sp1.noarch 2/135 Installing : ncurses-base-6.3-5.oe2203sp1.noarch 3/135 Installing : libreport-filesystem-2.15.2-2.oe2203sp1.noarch 4/135 Installing : dnf-data-4.14.0-13.oe2203sp1.noarch 5/135 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : python-setuptools-59.4.0-5.oe2203sp1.noarch 6/135 Installing : openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 7/135 Installing : openEuler-repos-1.0-3.5.oe2203sp1.x86_64 8/135 Installing : libselinux-3.3-2.oe2203sp1.x86_64 9/135 Installing : glibc-common-2.34-112.oe2203sp1.x86_64 10/135 Installing : ncurses-libs-6.3-5.oe2203sp1.x86_64 11/135 Installing : info-6.8-4.oe2203sp1.x86_64 12/135 Installing : bash-5.1.8-6.oe2203sp1.x86_64 13/135 Installing : setup-2.13.9.1-1.oe2203sp1.noarch 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systemd-libs-249-46.oe2203sp1.x86_64 114/135 Installing : dbus-libs-1:1.12.20-8.oe2203sp1.x86_64 115/135 Running scriptlet: dbus-libs-1:1.12.20-8.oe2203sp1.x86_64 115/135 Installing : python3-dbus-1.2.18-5.oe2203sp1.x86_64 116/135 Installing : libarchive-3.5.2-5.oe2203sp1.x86_64 117/135 Installing : openldap-2.6.0-6.oe2203sp1.x86_64 118/135 Installing : libcurl-7.79.1-17.oe2203sp1.x86_64 119/135 Installing : librepo-1.14.2-4.oe2203sp1.x86_64 120/135 Installing : curl-7.79.1-17.oe2203sp1.x86_64 121/135 Running scriptlet: tpm2-tss-3.1.0-3.oe2203sp1.x86_64 122/135 Installing : tpm2-tss-3.1.0-3.oe2203sp1.x86_64 122/135 Running scriptlet: tpm2-tss-3.1.0-3.oe2203sp1.x86_64 122/135 Installing : ima-evm-utils-libs-1.3.2-8.oe2203sp1.x86_64 123/135 Installing : rpm-4.17.0-22.oe2203sp1.x86_64 124/135 Running scriptlet: rpm-4.17.0-22.oe2203sp1.x86_64 124/135 Installing : rpm-libs-4.17.0-22.oe2203sp1.x86_64 125/135 Running scriptlet: rpm-libs-4.17.0-22.oe2203sp1.x86_64 125/135 Installing : libmodulemd-2.13.0-3.oe2203sp1.x86_64 126/135 Installing : libsolv-0.7.22-1.oe2203sp1.x86_64 127/135 Installing : libdnf-0.69.0-4.oe2203sp1.x86_64 128/135 Installing : python3-libdnf-0.69.0-4.oe2203sp1.x86_64 129/135 Installing : python3-hawkey-0.69.0-4.oe2203sp1.x86_64 130/135 Installing : python3-rpm-4.17.0-22.oe2203sp1.x86_64 131/135 Installing : python3-dnf-4.14.0-13.oe2203sp1.noarch 132/135 Installing : python3-dnf-plugins-core-4.3.1-2.oe2203sp1.noarc 133/135 Installing : dnf-4.14.0-13.oe2203sp1.noarch 134/135 Running scriptlet: dnf-4.14.0-13.oe2203sp1.noarch 134/135 Installing : dnf-plugins-core-4.3.1-2.oe2203sp1.noarch 135/135 Running scriptlet: glibc-common-2.34-112.oe2203sp1.x86_64 135/135 Running scriptlet: filesystem-3.16-5.oe2203sp1.x86_64 135/135 Running scriptlet: ca-certificates-2021.2.52-2.oe2203sp1.noarch 135/135 Running scriptlet: rpm-4.17.0-22.oe2203sp1.x86_64 135/135 Running scriptlet: glibc-common-2.34-112.oe2203sp1.x86_64 135/135 Running scriptlet: glib2-2.72.2-10.oe2203sp1.x86_64 135/135 Verifying : attr-2.5.1-3.oe2203sp1.x86_64 1/135 Verifying : audit-libs-1:3.0.1-6.oe2203sp1.x86_64 2/135 Verifying : basesystem-12-3.oe2203sp1.noarch 3/135 Verifying : bash-5.1.8-6.oe2203sp1.x86_64 4/135 Verifying : bc-1.07.1-12.oe2203sp1.x86_64 5/135 Verifying : brotli-1.0.9-3.oe2203sp1.x86_64 6/135 Verifying : bzip2-1.0.8-6.oe2203sp1.x86_64 7/135 Verifying : ca-certificates-2021.2.52-2.oe2203sp1.noarch 8/135 Verifying : chkconfig-1.21-1.oe2203sp1.x86_64 9/135 Verifying : coreutils-9.0-6.oe2203sp1.x86_64 10/135 Verifying : cracklib-2.9.8-1.oe2203sp1.x86_64 11/135 Verifying : crontabs-1.11-23.oe2203sp1.noarch 12/135 Verifying : crypto-policies-20200619-3.git781bbd4.oe2203sp1. 13/135 Verifying : cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86_64 14/135 Verifying : dbus-libs-1:1.12.20-8.oe2203sp1.x86_64 15/135 Verifying : dnf-plugins-core-4.3.1-2.oe2203sp1.noarch 16/135 Verifying : e2fsprogs-1.46.4-17.oe2203sp1.x86_64 17/135 Verifying : elfutils-0.185-17.oe2203sp1.x86_64 18/135 Verifying : expat-2.4.1-8.oe2203sp1.x86_64 19/135 Verifying : file-libs-5.41-2.oe2203sp1.x86_64 20/135 Verifying : filesystem-3.16-5.oe2203sp1.x86_64 21/135 Verifying : fuse-2.9.9-11.oe2203sp1.x86_64 22/135 Verifying : fuse-common-3.10.5-5.oe2203sp1.x86_64 23/135 Verifying : gawk-5.1.1-3.oe2203sp1.x86_64 24/135 Verifying : gmp-1:6.2.1-2.oe2203sp1.x86_64 25/135 Verifying : gnupg2-2.2.32-3.oe2203sp1.x86_64 26/135 Verifying : gpgme-1.16.0-2.oe2203sp1.x86_64 27/135 Verifying : grep-3.7-4.oe2203sp1.x86_64 28/135 Verifying : gzip-1.11-5.oe2203sp1.x86_64 29/135 Verifying : ima-evm-utils-libs-1.3.2-8.oe2203sp1.x86_64 30/135 Verifying : info-6.8-4.oe2203sp1.x86_64 31/135 Verifying : json-c-0.16-2.oe2203sp1.x86_64 32/135 Verifying : keyutils-libs-1.6.3-4.oe2203sp1.x86_64 33/135 Verifying : krb5-libs-1.19.2-6.oe2203sp1.x86_64 34/135 Verifying : libacl-2.3.1-2.oe2203sp1.x86_64 35/135 Verifying : libarchive-3.5.2-5.oe2203sp1.x86_64 36/135 Verifying : libassuan-2.5.5-2.oe2203sp1.x86_64 37/135 Verifying : libblkid-2.37.2-13.oe2203sp1.x86_64 38/135 Verifying : libcap-ng-0.8.3-1.oe2203sp1.x86_64 39/135 Verifying : libcomps-0.1.18-2.oe2203sp1.x86_64 40/135 Verifying : libev-4.33-4.oe2203sp1.x86_64 41/135 Verifying : libevent-2.1.12-5.oe2203sp1.x86_64 42/135 Verifying : libffi-3.4.2-5.oe2203sp1.x86_64 43/135 Verifying : libgcrypt-1.9.4-3.oe2203sp1.x86_64 44/135 Verifying : libgpg-error-1.43-2.oe2203sp1.x86_64 45/135 Verifying : libidn2-2.3.2-3.oe2203sp1.x86_64 46/135 Verifying : libmodulemd-2.13.0-3.oe2203sp1.x86_64 47/135 Verifying : libmount-2.37.2-13.oe2203sp1.x86_64 48/135 Verifying : libnsl2-2.0.0-5.oe2203sp1.x86_64 49/135 Verifying : libpng-2:1.6.38-1.oe2203sp1.x86_64 50/135 Verifying : libpsl-0.21.1-5.oe2203sp1.x86_64 51/135 Verifying : libpwquality-1.4.4-4.oe2203sp1.x86_64 52/135 Verifying : librepo-1.14.2-4.oe2203sp1.x86_64 53/135 Verifying : libreport-filesystem-2.15.2-2.oe2203sp1.noarch 54/135 Verifying : libselinux-3.3-2.oe2203sp1.x86_64 55/135 Verifying : libsepol-3.3-4.oe2203sp1.x86_64 56/135 Verifying : libsigsegv-2.14-1.oe2203sp1.x86_64 57/135 Verifying : libsmartcols-2.37.2-13.oe2203sp1.x86_64 58/135 Verifying : libsolv-0.7.22-1.oe2203sp1.x86_64 59/135 Verifying : libtasn1-4.17.0-3.oe2203sp1.x86_64 60/135 Verifying : libunistring-1.0-3.oe2203sp1.x86_64 61/135 Verifying : libuuid-2.37.2-13.oe2203sp1.x86_64 62/135 Verifying : libverto-0.3.2-2.oe2203sp1.x86_64 63/135 Verifying : libxcrypt-4.4.26-4.oe2203sp1.x86_64 64/135 Verifying : libyaml-0.2.5-4.oe2203sp1.x86_64 65/135 Verifying : logrotate-3.20.1-1.oe2203sp1.x86_64 66/135 Verifying : lz4-1.9.3-3.oe2203sp1.x86_64 67/135 Verifying : mpfr-4.1.0-2.oe2203sp1.x86_64 68/135 Verifying : ncurses-6.3-5.oe2203sp1.x86_64 69/135 Verifying : ncurses-base-6.3-5.oe2203sp1.noarch 70/135 Verifying : ncurses-libs-6.3-5.oe2203sp1.x86_64 71/135 Verifying : npth-1.6-3.oe2203sp1.x86_64 72/135 Verifying : openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 73/135 Verifying : openEuler-release-22.03LTS_SP1-56.oe2203sp1.x86_ 74/135 Verifying : openEuler-repos-1.0-3.5.oe2203sp1.x86_64 75/135 Verifying : p11-kit-0.24.0-2.oe2203sp1.x86_64 76/135 Verifying : p11-kit-trust-0.24.0-2.oe2203sp1.x86_64 77/135 Verifying : pcre-8.45-5.oe2203sp1.x86_64 78/135 Verifying : pcre2-10.39-6.oe2203sp1.x86_64 79/135 Verifying : popt-1.18-3.oe2203sp1.x86_64 80/135 Verifying : publicsuffix-list-20211113-3.oe2203sp1.noarch 81/135 Verifying : python-pip-wheel-21.3.1-2.oe2203sp1.noarch 82/135 Verifying : python3-dateutil-1:2.8.2-3.oe2203sp1.noarch 83/135 Verifying : python3-dbus-1.2.18-5.oe2203sp1.x86_64 84/135 Verifying : python3-distro-1.6.0-2.oe2203sp1.noarch 85/135 Verifying : python3-dnf-plugins-core-4.3.1-2.oe2203sp1.noarc 86/135 Verifying : python3-gpgme-1.16.0-2.oe2203sp1.x86_64 87/135 Verifying : python3-libcomps-0.1.18-2.oe2203sp1.x86_64 88/135 Verifying : python3-rpm-4.17.0-22.oe2203sp1.x86_64 89/135 Verifying : python3-six-1.16.0-2.oe2203sp1.noarch 90/135 Verifying : readline-8.1-2.oe2203sp1.x86_64 91/135 Verifying : rpm-4.17.0-22.oe2203sp1.x86_64 92/135 Verifying : rpm-libs-4.17.0-22.oe2203sp1.x86_64 93/135 Verifying : sed-4.8-5.oe2203sp1.x86_64 94/135 Verifying : setup-2.13.9.1-1.oe2203sp1.noarch 95/135 Verifying : slang-2.3.2-9.oe2203sp1.x86_64 96/135 Verifying : tcl-1:8.6.12-4.oe2203sp1.x86_64 97/135 Verifying : tzdata-2022a-11.oe2203sp1.noarch 98/135 Verifying : which-2.21-15.oe2203sp1.x86_64 99/135 Verifying : xz-libs-5.2.5-3.oe2203sp1.x86_64 100/135 Verifying : zlib-1.2.11-22.oe2203sp1.x86_64 101/135 Verifying : curl-7.79.1-17.oe2203sp1.x86_64 102/135 Verifying : dnf-4.14.0-13.oe2203sp1.noarch 103/135 Verifying : dnf-data-4.14.0-13.oe2203sp1.noarch 104/135 Verifying : gdbm-1:1.22-11.oe2203sp1.x86_64 105/135 Verifying : glib2-2.72.2-10.oe2203sp1.x86_64 106/135 Verifying : glibc-2.34-112.oe2203sp1.x86_64 107/135 Verifying : glibc-common-2.34-112.oe2203sp1.x86_64 108/135 Verifying : libcap-2.61-5.oe2203sp1.x86_64 109/135 Verifying : libcurl-7.79.1-17.oe2203sp1.x86_64 110/135 Verifying : libdnf-0.69.0-4.oe2203sp1.x86_64 111/135 Verifying : libgcc-10.3.1-22.oe2203sp1.x86_64 112/135 Verifying : libgomp-10.3.1-22.oe2203sp1.x86_64 113/135 Verifying : libksba-1.6.0-3.oe2203sp1.x86_64 114/135 Verifying : libnghttp2-1.46.0-3.oe2203sp1.x86_64 115/135 Verifying : libssh-0.9.6-7.oe2203sp1.x86_64 116/135 Verifying : libstdc++-10.3.1-22.oe2203sp1.x86_64 117/135 Verifying : libtirpc-1.3.2-3.oe2203sp1.x86_64 118/135 Verifying : libxml2-2.9.14-5.oe2203sp1.x86_64 119/135 Verifying : lua-5.4.3-11.oe2203sp1.x86_64 120/135 Verifying : newt-0.52.21-9.oe2203sp1.x86_64 121/135 Verifying : openldap-2.6.0-6.oe2203sp1.x86_64 122/135 Verifying : openssl-libs-1:1.1.1m-20.oe2203sp1.x86_64 123/135 Verifying : pam-1.5.2-6.oe2203sp1.x86_64 124/135 Verifying : pkgconf-1.8.0-3.oe2203sp1.x86_64 125/135 Verifying : python-setuptools-59.4.0-5.oe2203sp1.noarch 126/135 Verifying : python3-3.9.9-24.oe2203sp1.x86_64 127/135 Verifying : python3-dnf-4.14.0-13.oe2203sp1.noarch 128/135 Verifying : python3-hawkey-0.69.0-4.oe2203sp1.x86_64 129/135 Verifying : python3-libdnf-0.69.0-4.oe2203sp1.x86_64 130/135 Verifying : python3-setuptools-59.4.0-5.oe2203sp1.noarch 131/135 Verifying : sqlite-3.37.2-5.oe2203sp1.x86_64 132/135 Verifying : systemd-libs-249-46.oe2203sp1.x86_64 133/135 Verifying : tpm2-tss-3.1.0-3.oe2203sp1.x86_64 134/135 Verifying : zstd-1.5.0-4.oe2203sp1.x86_64 135/135 Installed: attr-2.5.1-3.oe2203sp1.x86_64 audit-libs-1:3.0.1-6.oe2203sp1.x86_64 basesystem-12-3.oe2203sp1.noarch bash-5.1.8-6.oe2203sp1.x86_64 bc-1.07.1-12.oe2203sp1.x86_64 brotli-1.0.9-3.oe2203sp1.x86_64 bzip2-1.0.8-6.oe2203sp1.x86_64 ca-certificates-2021.2.52-2.oe2203sp1.noarch chkconfig-1.21-1.oe2203sp1.x86_64 coreutils-9.0-6.oe2203sp1.x86_64 cracklib-2.9.8-1.oe2203sp1.x86_64 crontabs-1.11-23.oe2203sp1.noarch crypto-policies-20200619-3.git781bbd4.oe2203sp1.noarch curl-7.79.1-17.oe2203sp1.x86_64 cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86_64 dbus-libs-1:1.12.20-8.oe2203sp1.x86_64 dnf-4.14.0-13.oe2203sp1.noarch dnf-data-4.14.0-13.oe2203sp1.noarch dnf-plugins-core-4.3.1-2.oe2203sp1.noarch e2fsprogs-1.46.4-17.oe2203sp1.x86_64 elfutils-0.185-17.oe2203sp1.x86_64 expat-2.4.1-8.oe2203sp1.x86_64 file-libs-5.41-2.oe2203sp1.x86_64 filesystem-3.16-5.oe2203sp1.x86_64 fuse-2.9.9-11.oe2203sp1.x86_64 fuse-common-3.10.5-5.oe2203sp1.x86_64 gawk-5.1.1-3.oe2203sp1.x86_64 gdbm-1:1.22-11.oe2203sp1.x86_64 glib2-2.72.2-10.oe2203sp1.x86_64 glibc-2.34-112.oe2203sp1.x86_64 glibc-common-2.34-112.oe2203sp1.x86_64 gmp-1:6.2.1-2.oe2203sp1.x86_64 gnupg2-2.2.32-3.oe2203sp1.x86_64 gpgme-1.16.0-2.oe2203sp1.x86_64 grep-3.7-4.oe2203sp1.x86_64 gzip-1.11-5.oe2203sp1.x86_64 ima-evm-utils-libs-1.3.2-8.oe2203sp1.x86_64 info-6.8-4.oe2203sp1.x86_64 json-c-0.16-2.oe2203sp1.x86_64 keyutils-libs-1.6.3-4.oe2203sp1.x86_64 krb5-libs-1.19.2-6.oe2203sp1.x86_64 libacl-2.3.1-2.oe2203sp1.x86_64 libarchive-3.5.2-5.oe2203sp1.x86_64 libassuan-2.5.5-2.oe2203sp1.x86_64 libblkid-2.37.2-13.oe2203sp1.x86_64 libcap-2.61-5.oe2203sp1.x86_64 libcap-ng-0.8.3-1.oe2203sp1.x86_64 libcomps-0.1.18-2.oe2203sp1.x86_64 libcurl-7.79.1-17.oe2203sp1.x86_64 libdnf-0.69.0-4.oe2203sp1.x86_64 libev-4.33-4.oe2203sp1.x86_64 libevent-2.1.12-5.oe2203sp1.x86_64 libffi-3.4.2-5.oe2203sp1.x86_64 libgcc-10.3.1-22.oe2203sp1.x86_64 libgcrypt-1.9.4-3.oe2203sp1.x86_64 libgomp-10.3.1-22.oe2203sp1.x86_64 libgpg-error-1.43-2.oe2203sp1.x86_64 libidn2-2.3.2-3.oe2203sp1.x86_64 libksba-1.6.0-3.oe2203sp1.x86_64 libmodulemd-2.13.0-3.oe2203sp1.x86_64 libmount-2.37.2-13.oe2203sp1.x86_64 libnghttp2-1.46.0-3.oe2203sp1.x86_64 libnsl2-2.0.0-5.oe2203sp1.x86_64 libpng-2:1.6.38-1.oe2203sp1.x86_64 libpsl-0.21.1-5.oe2203sp1.x86_64 libpwquality-1.4.4-4.oe2203sp1.x86_64 librepo-1.14.2-4.oe2203sp1.x86_64 libreport-filesystem-2.15.2-2.oe2203sp1.noarch libselinux-3.3-2.oe2203sp1.x86_64 libsepol-3.3-4.oe2203sp1.x86_64 libsigsegv-2.14-1.oe2203sp1.x86_64 libsmartcols-2.37.2-13.oe2203sp1.x86_64 libsolv-0.7.22-1.oe2203sp1.x86_64 libssh-0.9.6-7.oe2203sp1.x86_64 libstdc++-10.3.1-22.oe2203sp1.x86_64 libtasn1-4.17.0-3.oe2203sp1.x86_64 libtirpc-1.3.2-3.oe2203sp1.x86_64 libunistring-1.0-3.oe2203sp1.x86_64 libuuid-2.37.2-13.oe2203sp1.x86_64 libverto-0.3.2-2.oe2203sp1.x86_64 libxcrypt-4.4.26-4.oe2203sp1.x86_64 libxml2-2.9.14-5.oe2203sp1.x86_64 libyaml-0.2.5-4.oe2203sp1.x86_64 logrotate-3.20.1-1.oe2203sp1.x86_64 lua-5.4.3-11.oe2203sp1.x86_64 lz4-1.9.3-3.oe2203sp1.x86_64 mpfr-4.1.0-2.oe2203sp1.x86_64 ncurses-6.3-5.oe2203sp1.x86_64 ncurses-base-6.3-5.oe2203sp1.noarch ncurses-libs-6.3-5.oe2203sp1.x86_64 newt-0.52.21-9.oe2203sp1.x86_64 npth-1.6-3.oe2203sp1.x86_64 openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 openEuler-release-22.03LTS_SP1-56.oe2203sp1.x86_64 openEuler-repos-1.0-3.5.oe2203sp1.x86_64 openldap-2.6.0-6.oe2203sp1.x86_64 openssl-libs-1:1.1.1m-20.oe2203sp1.x86_64 p11-kit-0.24.0-2.oe2203sp1.x86_64 p11-kit-trust-0.24.0-2.oe2203sp1.x86_64 pam-1.5.2-6.oe2203sp1.x86_64 pcre-8.45-5.oe2203sp1.x86_64 pcre2-10.39-6.oe2203sp1.x86_64 pkgconf-1.8.0-3.oe2203sp1.x86_64 popt-1.18-3.oe2203sp1.x86_64 publicsuffix-list-20211113-3.oe2203sp1.noarch python-pip-wheel-21.3.1-2.oe2203sp1.noarch python-setuptools-59.4.0-5.oe2203sp1.noarch python3-3.9.9-24.oe2203sp1.x86_64 python3-dateutil-1:2.8.2-3.oe2203sp1.noarch python3-dbus-1.2.18-5.oe2203sp1.x86_64 python3-distro-1.6.0-2.oe2203sp1.noarch python3-dnf-4.14.0-13.oe2203sp1.noarch python3-dnf-plugins-core-4.3.1-2.oe2203sp1.noarch python3-gpgme-1.16.0-2.oe2203sp1.x86_64 python3-hawkey-0.69.0-4.oe2203sp1.x86_64 python3-libcomps-0.1.18-2.oe2203sp1.x86_64 python3-libdnf-0.69.0-4.oe2203sp1.x86_64 python3-rpm-4.17.0-22.oe2203sp1.x86_64 python3-setuptools-59.4.0-5.oe2203sp1.noarch python3-six-1.16.0-2.oe2203sp1.noarch readline-8.1-2.oe2203sp1.x86_64 rpm-4.17.0-22.oe2203sp1.x86_64 rpm-libs-4.17.0-22.oe2203sp1.x86_64 sed-4.8-5.oe2203sp1.x86_64 setup-2.13.9.1-1.oe2203sp1.noarch slang-2.3.2-9.oe2203sp1.x86_64 sqlite-3.37.2-5.oe2203sp1.x86_64 systemd-libs-249-46.oe2203sp1.x86_64 tcl-1:8.6.12-4.oe2203sp1.x86_64 tpm2-tss-3.1.0-3.oe2203sp1.x86_64 tzdata-2022a-11.oe2203sp1.noarch which-2.21-15.oe2203sp1.x86_64 xz-libs-5.2.5-3.oe2203sp1.x86_64 zlib-1.2.11-22.oe2203sp1.x86_64 zstd-1.5.0-4.oe2203sp1.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 19 MB/s | 63 MB 00:03 OS 2.4 MB/s | 3.4 MB 00:01 everything 10 MB/s | 16 MB 00:01 EPOL 2.6 MB/s | 3.8 MB 00:01 update 10 MB/s | 17 MB 00:01 EPOL update 144 kB/s | 186 kB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: bash x86_64 5.1.8-6.oe2203sp1 OS 1.2 M bzip2 x86_64 1.0.8-6.oe2203sp1 OS 66 k coreutils x86_64 9.0-6.oe2203sp1 OS 2.7 M cpio x86_64 2.13-8.oe2203sp1 update 258 k diffutils x86_64 3.8-3.oe2203sp1 OS 323 k findutils x86_64 2:4.8.0-4.oe2203sp1 OS 389 k gawk x86_64 5.1.1-3.oe2203sp1 OS 374 k gcc-c++ x86_64 10.3.1-22.oe2203sp1 update 11 M grep x86_64 3.7-4.oe2203sp1 OS 301 k gzip x86_64 1.11-5.oe2203sp1 OS 108 k info x86_64 6.8-4.oe2203sp1 OS 172 k make x86_64 1:4.3-4.oe2203sp1 OS 325 k openEuler-release x86_64 22.03LTS_SP1-56.oe2203sp1 OS 22 k openEuler-rpm-config x86_64 30-33.oe2203sp1 OS 50 k patch x86_64 2.7.6-13.oe2203sp1 OS 122 k rpm-build x86_64 4.17.0-22.oe2203sp1 OS 70 k sed x86_64 4.8-5.oe2203sp1 OS 166 k shadow x86_64 2:4.9-9.oe2203sp1 update 613 k tar x86_64 2:1.34-4.oe2203sp1 update 785 k unzip x86_64 6.0-50.oe2203sp1 OS 123 k util-linux x86_64 2.37.2-13.oe2203sp1 OS 2.3 M which x86_64 2.21-15.oe2203sp1 OS 30 k xz x86_64 5.2.5-3.oe2203sp1 OS 142 k yum noarch 4.14.0-13.oe2203sp1 update 9.3 k Installing dependencies: attr x86_64 2.5.1-3.oe2203sp1 OS 55 k audit-libs x86_64 1:3.0.1-6.oe2203sp1 OS 98 k babeltrace x86_64 1.5.8-3.oe2203sp1 OS 205 k basesystem noarch 12-3.oe2203sp1 OS 7.0 k bc x86_64 1.07.1-12.oe2203sp1 OS 88 k binutils x86_64 2.37-14.oe2203sp1 OS 5.4 M brotli x86_64 1.0.9-3.oe2203sp1 OS 316 k ca-certificates noarch 2021.2.52-2.oe2203sp1 OS 386 k chkconfig x86_64 1.21-1.oe2203sp1 OS 174 k cpp x86_64 10.3.1-22.oe2203sp1 update 9.1 M cracklib x86_64 2.9.8-1.oe2203sp1 OS 3.9 M crontabs noarch 1.11-23.oe2203sp1 OS 17 k crypto-policies noarch 20200619-3.git781bbd4.oe2203sp1 OS 81 k curl x86_64 7.79.1-17.oe2203sp1 update 142 k cyrus-sasl-lib x86_64 2.1.28-1.oe2203sp1 OS 72 k debugedit x86_64 5.0-5.oe2203sp1 OS 75 k dnf noarch 4.14.0-13.oe2203sp1 update 12 k dnf-data noarch 4.14.0-13.oe2203sp1 update 23 k dwz x86_64 0.14-4.oe2203sp1 OS 119 k e2fsprogs x86_64 1.46.4-17.oe2203sp1 OS 1.1 M efi-srpm-macros noarch 4-9.oe2203sp1 OS 22 k elfutils x86_64 0.185-17.oe2203sp1 OS 599 k expat x86_64 2.4.1-8.oe2203sp1 OS 83 k file x86_64 5.41-2.oe2203sp1 OS 37 k file-libs x86_64 5.41-2.oe2203sp1 OS 661 k filesystem x86_64 3.16-5.oe2203sp1 OS 1.1 M fuse x86_64 2.9.9-11.oe2203sp1 OS 140 k fuse-common x86_64 3.10.5-5.oe2203sp1 OS 8.7 k gc x86_64 8.0.6-3.oe2203sp1 OS 242 k gcc x86_64 10.3.1-22.oe2203sp1 update 29 M gdb-headless x86_64 11.1-3.oe2203sp1 OS 3.5 M gdbm x86_64 1:1.22-11.oe2203sp1 update 171 k glib2 x86_64 2.72.2-10.oe2203sp1 update 2.7 M glibc x86_64 2.34-112.oe2203sp1 update 3.0 M glibc-common x86_64 2.34-112.oe2203sp1 update 3.4 M glibc-devel x86_64 2.34-112.oe2203sp1 update 1.8 M gmp x86_64 1:6.2.1-2.oe2203sp1 OS 267 k gmp-c++ x86_64 1:6.2.1-2.oe2203sp1 OS 17 k gmp-devel x86_64 1:6.2.1-2.oe2203sp1 OS 449 k gnupg2 x86_64 2.2.32-3.oe2203sp1 OS 2.2 M gpgme x86_64 1.16.0-2.oe2203sp1 OS 343 k guile x86_64 5:2.0.14-19.oe2203sp1 OS 3.4 M ima-evm-utils-libs x86_64 1.3.2-8.oe2203sp1 OS 18 k isl x86_64 0.16.1-11.oe2203sp1 everything 798 k isl-devel x86_64 0.16.1-11.oe2203sp1 everything 518 k json-c x86_64 0.16-2.oe2203sp1 OS 38 k kernel-headers x86_64 5.10.0-136.35.0.111.oe2203sp1 update 1.9 M keyutils-libs x86_64 1.6.3-4.oe2203sp1 OS 25 k krb5-libs x86_64 1.19.2-6.oe2203sp1 OS 652 k libacl x86_64 2.3.1-2.oe2203sp1 OS 23 k libarchive x86_64 3.5.2-5.oe2203sp1 OS 338 k libassuan x86_64 2.5.5-2.oe2203sp1 OS 59 k libblkid x86_64 2.37.2-13.oe2203sp1 OS 142 k libcap x86_64 2.61-5.oe2203sp1 update 63 k libcap-ng x86_64 0.8.3-1.oe2203sp1 OS 44 k libcomps x86_64 0.1.18-2.oe2203sp1 OS 70 k libcurl x86_64 7.79.1-17.oe2203sp1 update 281 k libdnf x86_64 0.69.0-4.oe2203sp1 update 679 k libev x86_64 4.33-4.oe2203sp1 OS 49 k libevent x86_64 2.1.12-5.oe2203sp1 OS 234 k libfdisk x86_64 2.37.2-13.oe2203sp1 OS 191 k libffi x86_64 3.4.2-5.oe2203sp1 OS 28 k libgcc x86_64 10.3.1-22.oe2203sp1 update 75 k libgcrypt x86_64 1.9.4-3.oe2203sp1 OS 487 k libgomp x86_64 10.3.1-22.oe2203sp1 update 229 k libgpg-error x86_64 1.43-2.oe2203sp1 OS 270 k libidn2 x86_64 2.3.2-3.oe2203sp1 OS 112 k libipt x86_64 2.0.5-1.oe2203sp1 OS 51 k libksba x86_64 1.6.0-3.oe2203sp1 update 146 k libmodulemd x86_64 2.13.0-3.oe2203sp1 OS 173 k libmount x86_64 2.37.2-13.oe2203sp1 OS 165 k libmpc x86_64 1.2.0-3.oe2203sp1 OS 58 k libnghttp2 x86_64 1.46.0-3.oe2203sp1 update 69 k libnsl2 x86_64 2.0.0-5.oe2203sp1 OS 28 k libpng x86_64 2:1.6.38-1.oe2203sp1 OS 105 k libpsl x86_64 0.21.1-5.oe2203sp1 OS 73 k libpwquality x86_64 1.4.4-4.oe2203sp1 OS 86 k librepo x86_64 1.14.2-4.oe2203sp1 OS 80 k libreport-filesystem noarch 2.15.2-2.oe2203sp1 OS 8.6 k libselinux x86_64 3.3-2.oe2203sp1 OS 111 k libsemanage x86_64 3.3-4.oe2203sp1 OS 103 k libsepol x86_64 3.3-4.oe2203sp1 OS 284 k libsigsegv x86_64 2.14-1.oe2203sp1 OS 43 k libsmartcols x86_64 2.37.2-13.oe2203sp1 OS 110 k libsolv x86_64 0.7.22-1.oe2203sp1 OS 388 k libssh x86_64 0.9.6-7.oe2203sp1 update 189 k libstdc++ x86_64 10.3.1-22.oe2203sp1 update 529 k libstdc++-devel x86_64 10.3.1-22.oe2203sp1 update 2.2 M libtasn1 x86_64 4.17.0-3.oe2203sp1 OS 79 k libtirpc x86_64 1.3.2-3.oe2203sp1 update 83 k libtool-ltdl x86_64 2.4.7-1.oe2203sp1 OS 33 k libunistring x86_64 1.0-3.oe2203sp1 OS 446 k libutempter x86_64 1.2.1-3.oe2203sp1 OS 24 k libuuid x86_64 2.37.2-13.oe2203sp1 OS 23 k libverto x86_64 0.3.2-2.oe2203sp1 OS 27 k libxcrypt x86_64 4.4.26-4.oe2203sp1 OS 117 k libxcrypt-devel x86_64 4.4.26-4.oe2203sp1 OS 107 k libxml2 x86_64 2.9.14-5.oe2203sp1 update 1.0 M libyaml x86_64 0.2.5-4.oe2203sp1 OS 57 k logrotate x86_64 3.20.1-1.oe2203sp1 OS 54 k lua x86_64 5.4.3-11.oe2203sp1 update 145 k lz4 x86_64 1.9.3-3.oe2203sp1 OS 109 k mpfr x86_64 4.1.0-2.oe2203sp1 OS 1.3 M ncurses x86_64 6.3-5.oe2203sp1 OS 679 k ncurses-base noarch 6.3-5.oe2203sp1 OS 54 k ncurses-libs x86_64 6.3-5.oe2203sp1 OS 287 k newt x86_64 0.52.21-9.oe2203sp1 update 97 k npth x86_64 1.6-3.oe2203sp1 OS 23 k openEuler-gpg-keys x86_64 1.0-3.5.oe2203sp1 OS 12 k openEuler-repos x86_64 1.0-3.5.oe2203sp1 OS 8.9 k openldap x86_64 2.6.0-6.oe2203sp1 update 220 k openssl-libs x86_64 1:1.1.1m-20.oe2203sp1 update 1.4 M p11-kit x86_64 0.24.0-2.oe2203sp1 OS 226 k p11-kit-trust x86_64 0.24.0-2.oe2203sp1 OS 123 k pam x86_64 1.5.2-6.oe2203sp1 update 438 k pcre x86_64 8.45-5.oe2203sp1 OS 465 k pcre2 x86_64 10.39-6.oe2203sp1 OS 597 k pkgconf x86_64 1.8.0-3.oe2203sp1 update 58 k popt x86_64 1.18-3.oe2203sp1 OS 50 k publicsuffix-list noarch 20211113-3.oe2203sp1 OS 128 k python-pip-wheel noarch 21.3.1-2.oe2203sp1 OS 1.5 M python-setuptools noarch 59.4.0-5.oe2203sp1 update 510 k python3 x86_64 3.9.9-24.oe2203sp1 update 8.0 M python3-dnf noarch 4.14.0-13.oe2203sp1 update 444 k python3-gpgme x86_64 1.16.0-2.oe2203sp1 OS 250 k python3-hawkey x86_64 0.69.0-4.oe2203sp1 update 89 k python3-libcomps x86_64 0.1.18-2.oe2203sp1 OS 43 k python3-libdnf x86_64 0.69.0-4.oe2203sp1 update 719 k python3-rpm x86_64 4.17.0-22.oe2203sp1 OS 79 k qt5-srpm-macros noarch 5.15.2-1.oe2203sp1 OS 8.5 k readline x86_64 8.1-2.oe2203sp1 OS 152 k rpm x86_64 4.17.0-22.oe2203sp1 OS 492 k rpm-libs x86_64 4.17.0-22.oe2203sp1 OS 367 k setup noarch 2.13.9.1-1.oe2203sp1 OS 151 k slang x86_64 2.3.2-9.oe2203sp1 OS 557 k sqlite x86_64 3.37.2-5.oe2203sp1 update 1.2 M systemd-libs x86_64 249-46.oe2203sp1 update 478 k tcl x86_64 1:8.6.12-4.oe2203sp1 OS 1.1 M tpm2-tss x86_64 3.1.0-3.oe2203sp1 update 575 k tzdata noarch 2022a-11.oe2203sp1 OS 428 k xz-libs x86_64 5.2.5-3.oe2203sp1 OS 82 k zip x86_64 3.0-30.oe2203sp1 OS 222 k zlib x86_64 1.2.11-22.oe2203sp1 OS 88 k zstd x86_64 1.5.0-4.oe2203sp1 update 754 k Transaction Summary ================================================================================ Install 168 Packages Total download size: 134 M Installed size: 481 M Downloading Packages: (1/168): attr-2.5.1-3.oe2203sp1.x86_64.rpm 327 kB/s | 55 kB 00:00 (2/168): basesystem-12-3.oe2203sp1.noarch.rpm 217 kB/s | 7.0 kB 00:00 (3/168): audit-libs-3.0.1-6.oe2203sp1.x86_64.rp 466 kB/s | 98 kB 00:00 (4/168): babeltrace-1.5.8-3.oe2203sp1.x86_64.rp 833 kB/s | 205 kB 00:00 (5/168): bash-5.1.8-6.oe2203sp1.x86_64.rpm 7.5 MB/s | 1.2 MB 00:00 (6/168): bc-1.07.1-12.oe2203sp1.x86_64.rpm 585 kB/s | 88 kB 00:00 (7/168): bzip2-1.0.8-6.oe2203sp1.x86_64.rpm 1.0 MB/s | 66 kB 00:00 (8/168): binutils-2.37-14.oe2203sp1.x86_64.rpm 29 MB/s | 5.4 MB 00:00 (9/168): brotli-1.0.9-3.oe2203sp1.x86_64.rpm 4.1 MB/s | 316 kB 00:00 (10/168): ca-certificates-2021.2.52-2.oe2203sp1 10 MB/s | 386 kB 00:00 (11/168): chkconfig-1.21-1.oe2203sp1.x86_64.rpm 5.1 MB/s | 174 kB 00:00 (12/168): coreutils-9.0-6.oe2203sp1.x86_64.rpm 46 MB/s | 2.7 MB 00:00 (13/168): crontabs-1.11-23.oe2203sp1.noarch.rpm 252 kB/s | 17 kB 00:00 (14/168): crypto-policies-20200619-3.git781bbd4 1.9 MB/s | 81 kB 00:00 (15/168): cracklib-2.9.8-1.oe2203sp1.x86_64.rpm 47 MB/s | 3.9 MB 00:00 (16/168): cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86 2.1 MB/s | 72 kB 00:00 (17/168): debugedit-5.0-5.oe2203sp1.x86_64.rpm 2.1 MB/s | 75 kB 00:00 (18/168): diffutils-3.8-3.oe2203sp1.x86_64.rpm 9.2 MB/s | 323 kB 00:00 (19/168): dwz-0.14-4.oe2203sp1.x86_64.rpm 3.4 MB/s | 119 kB 00:00 (20/168): e2fsprogs-1.46.4-17.oe2203sp1.x86_64. 28 MB/s | 1.1 MB 00:00 (21/168): efi-srpm-macros-4-9.oe2203sp1.noarch. 617 kB/s | 22 kB 00:00 (22/168): elfutils-0.185-17.oe2203sp1.x86_64.rp 16 MB/s | 599 kB 00:00 (23/168): expat-2.4.1-8.oe2203sp1.x86_64.rpm 2.4 MB/s | 83 kB 00:00 (24/168): file-5.41-2.oe2203sp1.x86_64.rpm 1.1 MB/s | 37 kB 00:00 (25/168): file-libs-5.41-2.oe2203sp1.x86_64.rpm 17 MB/s | 661 kB 00:00 (26/168): filesystem-3.16-5.oe2203sp1.x86_64.rp 27 MB/s | 1.1 MB 00:00 (27/168): findutils-4.8.0-4.oe2203sp1.x86_64.rp 9.2 MB/s | 389 kB 00:00 (28/168): fuse-2.9.9-11.oe2203sp1.x86_64.rpm 4.1 MB/s | 140 kB 00:00 (29/168): fuse-common-3.10.5-5.oe2203sp1.x86_64 261 kB/s | 8.7 kB 00:00 (30/168): gawk-5.1.1-3.oe2203sp1.x86_64.rpm 9.6 MB/s | 374 kB 00:00 (31/168): gc-8.0.6-3.oe2203sp1.x86_64.rpm 6.6 MB/s | 242 kB 00:00 (32/168): gmp-6.2.1-2.oe2203sp1.x86_64.rpm 5.8 MB/s | 267 kB 00:00 (33/168): gmp-c++-6.2.1-2.oe2203sp1.x86_64.rpm 337 kB/s | 17 kB 00:00 (34/168): gdb-headless-11.1-3.oe2203sp1.x86_64. 40 MB/s | 3.5 MB 00:00 (35/168): gmp-devel-6.2.1-2.oe2203sp1.x86_64.rp 11 MB/s | 449 kB 00:00 (36/168): gnupg2-2.2.32-3.oe2203sp1.x86_64.rpm 45 MB/s | 2.2 MB 00:00 (37/168): gpgme-1.16.0-2.oe2203sp1.x86_64.rpm 7.9 MB/s | 343 kB 00:00 (38/168): grep-3.7-4.oe2203sp1.x86_64.rpm 7.1 MB/s | 301 kB 00:00 (39/168): gzip-1.11-5.oe2203sp1.x86_64.rpm 3.1 MB/s | 108 kB 00:00 (40/168): ima-evm-utils-libs-1.3.2-8.oe2203sp1. 522 kB/s | 18 kB 00:00 (41/168): guile-2.0.14-19.oe2203sp1.x86_64.rpm 7.0 MB/s | 3.4 MB 00:00 (42/168): info-6.8-4.oe2203sp1.x86_64.rpm 383 kB/s | 172 kB 00:00 (43/168): json-c-0.16-2.oe2203sp1.x86_64.rpm 85 kB/s | 38 kB 00:00 (44/168): keyutils-libs-1.6.3-4.oe2203sp1.x86_6 740 kB/s | 25 kB 00:00 (45/168): libacl-2.3.1-2.oe2203sp1.x86_64.rpm 667 kB/s | 23 kB 00:00 (46/168): krb5-libs-1.19.2-6.oe2203sp1.x86_64.r 16 MB/s | 652 kB 00:00 (47/168): libarchive-3.5.2-5.oe2203sp1.x86_64.r 8.8 MB/s | 338 kB 00:00 (48/168): libassuan-2.5.5-2.oe2203sp1.x86_64.rp 1.6 MB/s | 59 kB 00:00 (49/168): libblkid-2.37.2-13.oe2203sp1.x86_64.r 4.1 MB/s | 142 kB 00:00 (50/168): libcomps-0.1.18-2.oe2203sp1.x86_64.rp 2.0 MB/s | 70 kB 00:00 (51/168): libcap-ng-0.8.3-1.oe2203sp1.x86_64.rp 1.2 MB/s | 44 kB 00:00 (52/168): libev-4.33-4.oe2203sp1.x86_64.rpm 1.4 MB/s | 49 kB 00:00 (53/168): libevent-2.1.12-5.oe2203sp1.x86_64.rp 264 kB/s | 234 kB 00:00 (54/168): libfdisk-2.37.2-13.oe2203sp1.x86_64.r 215 kB/s | 191 kB 00:00 (55/168): libffi-3.4.2-5.oe2203sp1.x86_64.rpm 32 kB/s | 28 kB 00:00 (56/168): libgcrypt-1.9.4-3.oe2203sp1.x86_64.rp 7.0 MB/s | 487 kB 00:00 (57/168): libgpg-error-1.43-2.oe2203sp1.x86_64. 3.9 MB/s | 270 kB 00:00 (58/168): libidn2-2.3.2-3.oe2203sp1.x86_64.rpm 1.6 MB/s | 112 kB 00:00 (59/168): libipt-2.0.5-1.oe2203sp1.x86_64.rpm 1.4 MB/s | 51 kB 00:00 (60/168): libmodulemd-2.13.0-3.oe2203sp1.x86_64 4.6 MB/s | 173 kB 00:00 (61/168): libmount-2.37.2-13.oe2203sp1.x86_64.r 4.0 MB/s | 165 kB 00:00 (62/168): libmpc-1.2.0-3.oe2203sp1.x86_64.rpm 1.7 MB/s | 58 kB 00:00 (63/168): libnsl2-2.0.0-5.oe2203sp1.x86_64.rpm 825 kB/s | 28 kB 00:00 (64/168): libpng-1.6.38-1.oe2203sp1.x86_64.rpm 3.1 MB/s | 105 kB 00:00 (65/168): libpsl-0.21.1-5.oe2203sp1.x86_64.rpm 2.1 MB/s | 73 kB 00:00 (66/168): libpwquality-1.4.4-4.oe2203sp1.x86_64 2.5 MB/s | 86 kB 00:00 (67/168): librepo-1.14.2-4.oe2203sp1.x86_64.rpm 2.4 MB/s | 80 kB 00:00 (68/168): libreport-filesystem-2.15.2-2.oe2203s 261 kB/s | 8.6 kB 00:00 (69/168): libselinux-3.3-2.oe2203sp1.x86_64.rpm 3.1 MB/s | 111 kB 00:00 (70/168): libsemanage-3.3-4.oe2203sp1.x86_64.rp 2.7 MB/s | 103 kB 00:00 (71/168): libsepol-3.3-4.oe2203sp1.x86_64.rpm 7.6 MB/s | 284 kB 00:00 (72/168): libsigsegv-2.14-1.oe2203sp1.x86_64.rp 1.3 MB/s | 43 kB 00:00 (73/168): libsmartcols-2.37.2-13.oe2203sp1.x86_ 3.1 MB/s | 110 kB 00:00 (74/168): libsolv-0.7.22-1.oe2203sp1.x86_64.rpm 10 MB/s | 388 kB 00:00 (75/168): libtasn1-4.17.0-3.oe2203sp1.x86_64.rp 1.2 MB/s | 79 kB 00:00 (76/168): libtool-ltdl-2.4.7-1.oe2203sp1.x86_64 44 kB/s | 33 kB 00:00 (77/168): libunistring-1.0-3.oe2203sp1.x86_64.r 614 kB/s | 446 kB 00:00 (78/168): libutempter-1.2.1-3.oe2203sp1.x86_64. 34 kB/s | 24 kB 00:00 (79/168): libuuid-2.37.2-13.oe2203sp1.x86_64.rp 706 kB/s | 23 kB 00:00 (80/168): libverto-0.3.2-2.oe2203sp1.x86_64.rpm 788 kB/s | 27 kB 00:00 (81/168): libxcrypt-4.4.26-4.oe2203sp1.x86_64.r 3.2 MB/s | 117 kB 00:00 (82/168): libxcrypt-devel-4.4.26-4.oe2203sp1.x8 3.0 MB/s | 107 kB 00:00 (83/168): libyaml-0.2.5-4.oe2203sp1.x86_64.rpm 1.7 MB/s | 57 kB 00:00 (84/168): logrotate-3.20.1-1.oe2203sp1.x86_64.r 1.5 MB/s | 54 kB 00:00 (85/168): lz4-1.9.3-3.oe2203sp1.x86_64.rpm 3.2 MB/s | 109 kB 00:00 (86/168): make-4.3-4.oe2203sp1.x86_64.rpm 9.1 MB/s | 325 kB 00:00 (87/168): mpfr-4.1.0-2.oe2203sp1.x86_64.rpm 15 MB/s | 1.3 MB 00:00 (88/168): ncurses-6.3-5.oe2203sp1.x86_64.rpm 9.5 MB/s | 679 kB 00:00 (89/168): ncurses-base-6.3-5.oe2203sp1.noarch.r 862 kB/s | 54 kB 00:00 (90/168): 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which-2.21-15.oe2203sp1.x86_64.rpm 653 kB/s | 30 kB 00:00 (119/168): util-linux-2.37.2-13.oe2203sp1.x86_6 43 MB/s | 2.3 MB 00:00 (120/168): xz-5.2.5-3.oe2203sp1.x86_64.rpm 3.3 MB/s | 142 kB 00:00 (121/168): xz-libs-5.2.5-3.oe2203sp1.x86_64.rpm 2.4 MB/s | 82 kB 00:00 (122/168): zlib-1.2.11-22.oe2203sp1.x86_64.rpm 2.5 MB/s | 88 kB 00:00 (123/168): zip-3.0-30.oe2203sp1.x86_64.rpm 6.0 MB/s | 222 kB 00:00 (124/168): isl-0.16.1-11.oe2203sp1.x86_64.rpm 20 MB/s | 798 kB 00:00 (125/168): isl-devel-0.16.1-11.oe2203sp1.x86_64 14 MB/s | 518 kB 00:00 (126/168): cpio-2.13-8.oe2203sp1.x86_64.rpm 6.5 MB/s | 258 kB 00:00 (127/168): dnf-4.14.0-13.oe2203sp1.noarch.rpm 196 kB/s | 12 kB 00:00 (128/168): curl-7.79.1-17.oe2203sp1.x86_64.rpm 2.1 MB/s | 142 kB 00:00 (129/168): dnf-data-4.14.0-13.oe2203sp1.noarch. 530 kB/s | 23 kB 00:00 (130/168): cpp-10.3.1-22.oe2203sp1.x86_64.rpm 63 MB/s | 9.1 MB 00:00 (131/168): gdbm-1.22-11.oe2203sp1.x86_64.rpm 2.4 MB/s | 171 kB 00:00 (132/168): 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libssh-0.9.6-7.oe2203sp1.x86_64.rpm 5.3 MB/s | 189 kB 00:00 (147/168): libstdc++-10.3.1-22.oe2203sp1.x86_64 13 MB/s | 529 kB 00:00 (148/168): libstdc++-devel-10.3.1-22.oe2203sp1. 45 MB/s | 2.2 MB 00:00 (149/168): libtirpc-1.3.2-3.oe2203sp1.x86_64.rp 1.7 MB/s | 83 kB 00:00 (150/168): libxml2-2.9.14-5.oe2203sp1.x86_64.rp 20 MB/s | 1.0 MB 00:00 (151/168): lua-5.4.3-11.oe2203sp1.x86_64.rpm 1.7 MB/s | 145 kB 00:00 (152/168): newt-0.52.21-9.oe2203sp1.x86_64.rpm 1.2 MB/s | 97 kB 00:00 (153/168): openldap-2.6.0-6.oe2203sp1.x86_64.rp 2.3 MB/s | 220 kB 00:00 (154/168): pam-1.5.2-6.oe2203sp1.x86_64.rpm 4.6 MB/s | 438 kB 00:00 (155/168): openssl-libs-1.1.1m-20.oe2203sp1.x86 14 MB/s | 1.4 MB 00:00 (156/168): pkgconf-1.8.0-3.oe2203sp1.x86_64.rpm 609 kB/s | 58 kB 00:00 (157/168): python-setuptools-59.4.0-5.oe2203sp1 14 MB/s | 510 kB 00:00 (158/168): python3-hawkey-0.69.0-4.oe2203sp1.x8 989 kB/s | 89 kB 00:00 (159/168): python3-dnf-4.14.0-13.oe2203sp1.noar 3.4 MB/s | 444 kB 00:00 (160/168): python3-3.9.9-24.oe2203sp1.x86_64.rp 39 MB/s | 8.0 MB 00:00 (161/168): python3-libdnf-0.69.0-4.oe2203sp1.x8 8.8 MB/s | 719 kB 00:00 (162/168): shadow-4.9-9.oe2203sp1.x86_64.rpm 9.9 MB/s | 613 kB 00:00 (163/168): systemd-libs-249-46.oe2203sp1.x86_64 13 MB/s | 478 kB 00:00 (164/168): sqlite-3.37.2-5.oe2203sp1.x86_64.rpm 28 MB/s | 1.2 MB 00:00 (165/168): tar-1.34-4.oe2203sp1.x86_64.rpm 14 MB/s | 785 kB 00:00 (166/168): tpm2-tss-3.1.0-3.oe2203sp1.x86_64.rp 15 MB/s | 575 kB 00:00 (167/168): yum-4.14.0-13.oe2203sp1.noarch.rpm 283 kB/s | 9.3 kB 00:00 (168/168): zstd-1.5.0-4.oe2203sp1.x86_64.rpm 19 MB/s | 754 kB 00:00 -------------------------------------------------------------------------------- Total 16 MB/s | 134 MB 00:08 OS 2.9 MB/s | 3.0 kB 00:00 Importing GPG key 0xB675600B: Userid : "openeuler " Fingerprint: 8AA1 6BF9 F2CA 5244 010D CA96 3B47 7C60 B675 600B From : /usr/share/distribution-gpg-keys/openeuler/RPM-GPG-KEY-openEuler-EulerMaker Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-5.oe2203sp1.x86_64 1/1 Preparing : 1/1 Installing : libgcc-10.3.1-22.oe2203sp1.x86_64 1/168 Running scriptlet: libgcc-10.3.1-22.oe2203sp1.x86_64 1/168 Installing : ncurses-base-6.3-5.oe2203sp1.noarch 2/168 Installing : libreport-filesystem-2.15.2-2.oe2203sp1.noarch 3/168 Installing : dnf-data-4.14.0-13.oe2203sp1.noarch 4/168 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : python-setuptools-59.4.0-5.oe2203sp1.noarch 5/168 Installing : kernel-headers-5.10.0-136.35.0.111.oe2203sp1.x86 6/168 Installing : tzdata-2022a-11.oe2203sp1.noarch 7/168 Installing : qt5-srpm-macros-5.15.2-1.oe2203sp1.noarch 8/168 Installing : openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 9/168 Installing : openEuler-repos-1.0-3.5.oe2203sp1.x86_64 10/168 Installing : libselinux-3.3-2.oe2203sp1.x86_64 11/168 Installing : glibc-common-2.34-112.oe2203sp1.x86_64 12/168 Installing : ncurses-libs-6.3-5.oe2203sp1.x86_64 13/168 Installing : 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Verifying : libxcrypt-devel-4.4.26-4.oe2203sp1.x86_64 82/168 Verifying : libyaml-0.2.5-4.oe2203sp1.x86_64 83/168 Verifying : logrotate-3.20.1-1.oe2203sp1.x86_64 84/168 Verifying : lz4-1.9.3-3.oe2203sp1.x86_64 85/168 Verifying : make-1:4.3-4.oe2203sp1.x86_64 86/168 Verifying : mpfr-4.1.0-2.oe2203sp1.x86_64 87/168 Verifying : ncurses-6.3-5.oe2203sp1.x86_64 88/168 Verifying : ncurses-base-6.3-5.oe2203sp1.noarch 89/168 Verifying : ncurses-libs-6.3-5.oe2203sp1.x86_64 90/168 Verifying : npth-1.6-3.oe2203sp1.x86_64 91/168 Verifying : openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 92/168 Verifying : openEuler-release-22.03LTS_SP1-56.oe2203sp1.x86_ 93/168 Verifying : openEuler-repos-1.0-3.5.oe2203sp1.x86_64 94/168 Verifying : openEuler-rpm-config-30-33.oe2203sp1.x86_64 95/168 Verifying : p11-kit-0.24.0-2.oe2203sp1.x86_64 96/168 Verifying : p11-kit-trust-0.24.0-2.oe2203sp1.x86_64 97/168 Verifying : patch-2.7.6-13.oe2203sp1.x86_64 98/168 Verifying : pcre-8.45-5.oe2203sp1.x86_64 99/168 Verifying : pcre2-10.39-6.oe2203sp1.x86_64 100/168 Verifying : popt-1.18-3.oe2203sp1.x86_64 101/168 Verifying : publicsuffix-list-20211113-3.oe2203sp1.noarch 102/168 Verifying : python-pip-wheel-21.3.1-2.oe2203sp1.noarch 103/168 Verifying : python3-gpgme-1.16.0-2.oe2203sp1.x86_64 104/168 Verifying : python3-libcomps-0.1.18-2.oe2203sp1.x86_64 105/168 Verifying : python3-rpm-4.17.0-22.oe2203sp1.x86_64 106/168 Verifying : qt5-srpm-macros-5.15.2-1.oe2203sp1.noarch 107/168 Verifying : readline-8.1-2.oe2203sp1.x86_64 108/168 Verifying : rpm-4.17.0-22.oe2203sp1.x86_64 109/168 Verifying : rpm-build-4.17.0-22.oe2203sp1.x86_64 110/168 Verifying : rpm-libs-4.17.0-22.oe2203sp1.x86_64 111/168 Verifying : sed-4.8-5.oe2203sp1.x86_64 112/168 Verifying : setup-2.13.9.1-1.oe2203sp1.noarch 113/168 Verifying : slang-2.3.2-9.oe2203sp1.x86_64 114/168 Verifying : tcl-1:8.6.12-4.oe2203sp1.x86_64 115/168 Verifying : tzdata-2022a-11.oe2203sp1.noarch 116/168 Verifying : unzip-6.0-50.oe2203sp1.x86_64 117/168 Verifying : util-linux-2.37.2-13.oe2203sp1.x86_64 118/168 Verifying : which-2.21-15.oe2203sp1.x86_64 119/168 Verifying : xz-5.2.5-3.oe2203sp1.x86_64 120/168 Verifying : xz-libs-5.2.5-3.oe2203sp1.x86_64 121/168 Verifying : zip-3.0-30.oe2203sp1.x86_64 122/168 Verifying : zlib-1.2.11-22.oe2203sp1.x86_64 123/168 Verifying : isl-0.16.1-11.oe2203sp1.x86_64 124/168 Verifying : isl-devel-0.16.1-11.oe2203sp1.x86_64 125/168 Verifying : cpio-2.13-8.oe2203sp1.x86_64 126/168 Verifying : cpp-10.3.1-22.oe2203sp1.x86_64 127/168 Verifying : curl-7.79.1-17.oe2203sp1.x86_64 128/168 Verifying : dnf-4.14.0-13.oe2203sp1.noarch 129/168 Verifying : dnf-data-4.14.0-13.oe2203sp1.noarch 130/168 Verifying : gcc-10.3.1-22.oe2203sp1.x86_64 131/168 Verifying : gcc-c++-10.3.1-22.oe2203sp1.x86_64 132/168 Verifying : gdbm-1:1.22-11.oe2203sp1.x86_64 133/168 Verifying : glib2-2.72.2-10.oe2203sp1.x86_64 134/168 Verifying : glibc-2.34-112.oe2203sp1.x86_64 135/168 Verifying : glibc-common-2.34-112.oe2203sp1.x86_64 136/168 Verifying : glibc-devel-2.34-112.oe2203sp1.x86_64 137/168 Verifying : kernel-headers-5.10.0-136.35.0.111.oe2203sp1.x86 138/168 Verifying : libcap-2.61-5.oe2203sp1.x86_64 139/168 Verifying : libcurl-7.79.1-17.oe2203sp1.x86_64 140/168 Verifying : libdnf-0.69.0-4.oe2203sp1.x86_64 141/168 Verifying : libgcc-10.3.1-22.oe2203sp1.x86_64 142/168 Verifying : libgomp-10.3.1-22.oe2203sp1.x86_64 143/168 Verifying : libksba-1.6.0-3.oe2203sp1.x86_64 144/168 Verifying : libnghttp2-1.46.0-3.oe2203sp1.x86_64 145/168 Verifying : libssh-0.9.6-7.oe2203sp1.x86_64 146/168 Verifying : libstdc++-10.3.1-22.oe2203sp1.x86_64 147/168 Verifying : libstdc++-devel-10.3.1-22.oe2203sp1.x86_64 148/168 Verifying : libtirpc-1.3.2-3.oe2203sp1.x86_64 149/168 Verifying : libxml2-2.9.14-5.oe2203sp1.x86_64 150/168 Verifying : lua-5.4.3-11.oe2203sp1.x86_64 151/168 Verifying : newt-0.52.21-9.oe2203sp1.x86_64 152/168 Verifying : openldap-2.6.0-6.oe2203sp1.x86_64 153/168 Verifying : openssl-libs-1:1.1.1m-20.oe2203sp1.x86_64 154/168 Verifying : pam-1.5.2-6.oe2203sp1.x86_64 155/168 Verifying : pkgconf-1.8.0-3.oe2203sp1.x86_64 156/168 Verifying : python-setuptools-59.4.0-5.oe2203sp1.noarch 157/168 Verifying : python3-3.9.9-24.oe2203sp1.x86_64 158/168 Verifying : python3-dnf-4.14.0-13.oe2203sp1.noarch 159/168 Verifying : python3-hawkey-0.69.0-4.oe2203sp1.x86_64 160/168 Verifying : python3-libdnf-0.69.0-4.oe2203sp1.x86_64 161/168 Verifying : shadow-2:4.9-9.oe2203sp1.x86_64 162/168 Verifying : sqlite-3.37.2-5.oe2203sp1.x86_64 163/168 Verifying : systemd-libs-249-46.oe2203sp1.x86_64 164/168 Verifying : tar-2:1.34-4.oe2203sp1.x86_64 165/168 Verifying : tpm2-tss-3.1.0-3.oe2203sp1.x86_64 166/168 Verifying : yum-4.14.0-13.oe2203sp1.noarch 167/168 Verifying : zstd-1.5.0-4.oe2203sp1.x86_64 168/168 Installed: attr-2.5.1-3.oe2203sp1.x86_64 audit-libs-1:3.0.1-6.oe2203sp1.x86_64 babeltrace-1.5.8-3.oe2203sp1.x86_64 basesystem-12-3.oe2203sp1.noarch bash-5.1.8-6.oe2203sp1.x86_64 bc-1.07.1-12.oe2203sp1.x86_64 binutils-2.37-14.oe2203sp1.x86_64 brotli-1.0.9-3.oe2203sp1.x86_64 bzip2-1.0.8-6.oe2203sp1.x86_64 ca-certificates-2021.2.52-2.oe2203sp1.noarch chkconfig-1.21-1.oe2203sp1.x86_64 coreutils-9.0-6.oe2203sp1.x86_64 cpio-2.13-8.oe2203sp1.x86_64 cpp-10.3.1-22.oe2203sp1.x86_64 cracklib-2.9.8-1.oe2203sp1.x86_64 crontabs-1.11-23.oe2203sp1.noarch crypto-policies-20200619-3.git781bbd4.oe2203sp1.noarch curl-7.79.1-17.oe2203sp1.x86_64 cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86_64 debugedit-5.0-5.oe2203sp1.x86_64 diffutils-3.8-3.oe2203sp1.x86_64 dnf-4.14.0-13.oe2203sp1.noarch dnf-data-4.14.0-13.oe2203sp1.noarch dwz-0.14-4.oe2203sp1.x86_64 e2fsprogs-1.46.4-17.oe2203sp1.x86_64 efi-srpm-macros-4-9.oe2203sp1.noarch elfutils-0.185-17.oe2203sp1.x86_64 expat-2.4.1-8.oe2203sp1.x86_64 file-5.41-2.oe2203sp1.x86_64 file-libs-5.41-2.oe2203sp1.x86_64 filesystem-3.16-5.oe2203sp1.x86_64 findutils-2:4.8.0-4.oe2203sp1.x86_64 fuse-2.9.9-11.oe2203sp1.x86_64 fuse-common-3.10.5-5.oe2203sp1.x86_64 gawk-5.1.1-3.oe2203sp1.x86_64 gc-8.0.6-3.oe2203sp1.x86_64 gcc-10.3.1-22.oe2203sp1.x86_64 gcc-c++-10.3.1-22.oe2203sp1.x86_64 gdb-headless-11.1-3.oe2203sp1.x86_64 gdbm-1:1.22-11.oe2203sp1.x86_64 glib2-2.72.2-10.oe2203sp1.x86_64 glibc-2.34-112.oe2203sp1.x86_64 glibc-common-2.34-112.oe2203sp1.x86_64 glibc-devel-2.34-112.oe2203sp1.x86_64 gmp-1:6.2.1-2.oe2203sp1.x86_64 gmp-c++-1:6.2.1-2.oe2203sp1.x86_64 gmp-devel-1:6.2.1-2.oe2203sp1.x86_64 gnupg2-2.2.32-3.oe2203sp1.x86_64 gpgme-1.16.0-2.oe2203sp1.x86_64 grep-3.7-4.oe2203sp1.x86_64 guile-5:2.0.14-19.oe2203sp1.x86_64 gzip-1.11-5.oe2203sp1.x86_64 ima-evm-utils-libs-1.3.2-8.oe2203sp1.x86_64 info-6.8-4.oe2203sp1.x86_64 isl-0.16.1-11.oe2203sp1.x86_64 isl-devel-0.16.1-11.oe2203sp1.x86_64 json-c-0.16-2.oe2203sp1.x86_64 kernel-headers-5.10.0-136.35.0.111.oe2203sp1.x86_64 keyutils-libs-1.6.3-4.oe2203sp1.x86_64 krb5-libs-1.19.2-6.oe2203sp1.x86_64 libacl-2.3.1-2.oe2203sp1.x86_64 libarchive-3.5.2-5.oe2203sp1.x86_64 libassuan-2.5.5-2.oe2203sp1.x86_64 libblkid-2.37.2-13.oe2203sp1.x86_64 libcap-2.61-5.oe2203sp1.x86_64 libcap-ng-0.8.3-1.oe2203sp1.x86_64 libcomps-0.1.18-2.oe2203sp1.x86_64 libcurl-7.79.1-17.oe2203sp1.x86_64 libdnf-0.69.0-4.oe2203sp1.x86_64 libev-4.33-4.oe2203sp1.x86_64 libevent-2.1.12-5.oe2203sp1.x86_64 libfdisk-2.37.2-13.oe2203sp1.x86_64 libffi-3.4.2-5.oe2203sp1.x86_64 libgcc-10.3.1-22.oe2203sp1.x86_64 libgcrypt-1.9.4-3.oe2203sp1.x86_64 libgomp-10.3.1-22.oe2203sp1.x86_64 libgpg-error-1.43-2.oe2203sp1.x86_64 libidn2-2.3.2-3.oe2203sp1.x86_64 libipt-2.0.5-1.oe2203sp1.x86_64 libksba-1.6.0-3.oe2203sp1.x86_64 libmodulemd-2.13.0-3.oe2203sp1.x86_64 libmount-2.37.2-13.oe2203sp1.x86_64 libmpc-1.2.0-3.oe2203sp1.x86_64 libnghttp2-1.46.0-3.oe2203sp1.x86_64 libnsl2-2.0.0-5.oe2203sp1.x86_64 libpng-2:1.6.38-1.oe2203sp1.x86_64 libpsl-0.21.1-5.oe2203sp1.x86_64 libpwquality-1.4.4-4.oe2203sp1.x86_64 librepo-1.14.2-4.oe2203sp1.x86_64 libreport-filesystem-2.15.2-2.oe2203sp1.noarch libselinux-3.3-2.oe2203sp1.x86_64 libsemanage-3.3-4.oe2203sp1.x86_64 libsepol-3.3-4.oe2203sp1.x86_64 libsigsegv-2.14-1.oe2203sp1.x86_64 libsmartcols-2.37.2-13.oe2203sp1.x86_64 libsolv-0.7.22-1.oe2203sp1.x86_64 libssh-0.9.6-7.oe2203sp1.x86_64 libstdc++-10.3.1-22.oe2203sp1.x86_64 libstdc++-devel-10.3.1-22.oe2203sp1.x86_64 libtasn1-4.17.0-3.oe2203sp1.x86_64 libtirpc-1.3.2-3.oe2203sp1.x86_64 libtool-ltdl-2.4.7-1.oe2203sp1.x86_64 libunistring-1.0-3.oe2203sp1.x86_64 libutempter-1.2.1-3.oe2203sp1.x86_64 libuuid-2.37.2-13.oe2203sp1.x86_64 libverto-0.3.2-2.oe2203sp1.x86_64 libxcrypt-4.4.26-4.oe2203sp1.x86_64 libxcrypt-devel-4.4.26-4.oe2203sp1.x86_64 libxml2-2.9.14-5.oe2203sp1.x86_64 libyaml-0.2.5-4.oe2203sp1.x86_64 logrotate-3.20.1-1.oe2203sp1.x86_64 lua-5.4.3-11.oe2203sp1.x86_64 lz4-1.9.3-3.oe2203sp1.x86_64 make-1:4.3-4.oe2203sp1.x86_64 mpfr-4.1.0-2.oe2203sp1.x86_64 ncurses-6.3-5.oe2203sp1.x86_64 ncurses-base-6.3-5.oe2203sp1.noarch ncurses-libs-6.3-5.oe2203sp1.x86_64 newt-0.52.21-9.oe2203sp1.x86_64 npth-1.6-3.oe2203sp1.x86_64 openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 openEuler-release-22.03LTS_SP1-56.oe2203sp1.x86_64 openEuler-repos-1.0-3.5.oe2203sp1.x86_64 openEuler-rpm-config-30-33.oe2203sp1.x86_64 openldap-2.6.0-6.oe2203sp1.x86_64 openssl-libs-1:1.1.1m-20.oe2203sp1.x86_64 p11-kit-0.24.0-2.oe2203sp1.x86_64 p11-kit-trust-0.24.0-2.oe2203sp1.x86_64 pam-1.5.2-6.oe2203sp1.x86_64 patch-2.7.6-13.oe2203sp1.x86_64 pcre-8.45-5.oe2203sp1.x86_64 pcre2-10.39-6.oe2203sp1.x86_64 pkgconf-1.8.0-3.oe2203sp1.x86_64 popt-1.18-3.oe2203sp1.x86_64 publicsuffix-list-20211113-3.oe2203sp1.noarch python-pip-wheel-21.3.1-2.oe2203sp1.noarch python-setuptools-59.4.0-5.oe2203sp1.noarch python3-3.9.9-24.oe2203sp1.x86_64 python3-dnf-4.14.0-13.oe2203sp1.noarch python3-gpgme-1.16.0-2.oe2203sp1.x86_64 python3-hawkey-0.69.0-4.oe2203sp1.x86_64 python3-libcomps-0.1.18-2.oe2203sp1.x86_64 python3-libdnf-0.69.0-4.oe2203sp1.x86_64 python3-rpm-4.17.0-22.oe2203sp1.x86_64 qt5-srpm-macros-5.15.2-1.oe2203sp1.noarch readline-8.1-2.oe2203sp1.x86_64 rpm-4.17.0-22.oe2203sp1.x86_64 rpm-build-4.17.0-22.oe2203sp1.x86_64 rpm-libs-4.17.0-22.oe2203sp1.x86_64 sed-4.8-5.oe2203sp1.x86_64 setup-2.13.9.1-1.oe2203sp1.noarch shadow-2:4.9-9.oe2203sp1.x86_64 slang-2.3.2-9.oe2203sp1.x86_64 sqlite-3.37.2-5.oe2203sp1.x86_64 systemd-libs-249-46.oe2203sp1.x86_64 tar-2:1.34-4.oe2203sp1.x86_64 tcl-1:8.6.12-4.oe2203sp1.x86_64 tpm2-tss-3.1.0-3.oe2203sp1.x86_64 tzdata-2022a-11.oe2203sp1.noarch unzip-6.0-50.oe2203sp1.x86_64 util-linux-2.37.2-13.oe2203sp1.x86_64 which-2.21-15.oe2203sp1.x86_64 xz-5.2.5-3.oe2203sp1.x86_64 xz-libs-5.2.5-3.oe2203sp1.x86_64 yum-4.14.0-13.oe2203sp1.noarch zip-3.0-30.oe2203sp1.x86_64 zlib-1.2.11-22.oe2203sp1.x86_64 zstd-1.5.0-4.oe2203sp1.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: openEuler-gpg-keys-1.0-3.5.oe2203sp1.x86_64 zstd-1.5.0-4.oe2203sp1.x86_64 pcre2-10.39-6.oe2203sp1.x86_64 libffi-3.4.2-5.oe2203sp1.x86_64 mpfr-4.1.0-2.oe2203sp1.x86_64 libyaml-0.2.5-4.oe2203sp1.x86_64 openssl-libs-1.1.1m-20.oe2203sp1.x86_64 ca-certificates-2021.2.52-2.oe2203sp1.noarch unzip-6.0-50.oe2203sp1.x86_64 libpsl-0.21.1-5.oe2203sp1.x86_64 zlib-1.2.11-22.oe2203sp1.x86_64 libssh-0.9.6-7.oe2203sp1.x86_64 libuuid-2.37.2-13.oe2203sp1.x86_64 gpg-pubkey-b675600b-63913a47 glibc-common-2.34-112.oe2203sp1.x86_64 gc-8.0.6-3.oe2203sp1.x86_64 make-4.3-4.oe2203sp1.x86_64 brotli-1.0.9-3.oe2203sp1.x86_64 libstdc++-devel-10.3.1-22.oe2203sp1.x86_64 libxml2-2.9.14-5.oe2203sp1.x86_64 tpm2-tss-3.1.0-3.oe2203sp1.x86_64 libpng-1.6.38-1.oe2203sp1.x86_64 xz-libs-5.2.5-3.oe2203sp1.x86_64 python-setuptools-59.4.0-5.oe2203sp1.noarch findutils-4.8.0-4.oe2203sp1.x86_64 cracklib-2.9.8-1.oe2203sp1.x86_64 which-2.21-15.oe2203sp1.x86_64 info-6.8-4.oe2203sp1.x86_64 python3-rpm-4.17.0-22.oe2203sp1.x86_64 python3-gpgme-1.16.0-2.oe2203sp1.x86_64 libidn2-2.3.2-3.oe2203sp1.x86_64 crypto-policies-20200619-3.git781bbd4.oe2203sp1.noarch bc-1.07.1-12.oe2203sp1.x86_64 curl-7.79.1-17.oe2203sp1.x86_64 filesystem-3.16-5.oe2203sp1.x86_64 gawk-5.1.1-3.oe2203sp1.x86_64 gmp-devel-6.2.1-2.oe2203sp1.x86_64 libsolv-0.7.22-1.oe2203sp1.x86_64 openldap-2.6.0-6.oe2203sp1.x86_64 libsepol-3.3-4.oe2203sp1.x86_64 libstdc++-10.3.1-22.oe2203sp1.x86_64 libxcrypt-devel-4.4.26-4.oe2203sp1.x86_64 libipt-2.0.5-1.oe2203sp1.x86_64 expat-2.4.1-8.oe2203sp1.x86_64 libcomps-0.1.18-2.oe2203sp1.x86_64 libverto-0.3.2-2.oe2203sp1.x86_64 libcap-2.61-5.oe2203sp1.x86_64 tzdata-2022a-11.oe2203sp1.noarch libgcc-10.3.1-22.oe2203sp1.x86_64 libmpc-1.2.0-3.oe2203sp1.x86_64 kernel-headers-5.10.0-136.35.0.111.oe2203sp1.x86_64 lua-5.4.3-11.oe2203sp1.x86_64 ncurses-libs-6.3-5.oe2203sp1.x86_64 fuse-common-3.10.5-5.oe2203sp1.x86_64 gpgme-1.16.0-2.oe2203sp1.x86_64 qt5-srpm-macros-5.15.2-1.oe2203sp1.noarch readline-8.1-2.oe2203sp1.x86_64 libnsl2-2.0.0-5.oe2203sp1.x86_64 gdbm-1.22-11.oe2203sp1.x86_64 libsigsegv-2.14-1.oe2203sp1.x86_64 libacl-2.3.1-2.oe2203sp1.x86_64 python3-libcomps-0.1.18-2.oe2203sp1.x86_64 pam-1.5.2-6.oe2203sp1.x86_64 libsemanage-3.3-4.oe2203sp1.x86_64 cpp-10.3.1-22.oe2203sp1.x86_64 libevent-2.1.12-5.oe2203sp1.x86_64 libdnf-0.69.0-4.oe2203sp1.x86_64 chkconfig-1.21-1.oe2203sp1.x86_64 guile-2.0.14-19.oe2203sp1.x86_64 libassuan-2.5.5-2.oe2203sp1.x86_64 python-pip-wheel-21.3.1-2.oe2203sp1.noarch gdb-headless-11.1-3.oe2203sp1.x86_64 libunistring-1.0-3.oe2203sp1.x86_64 libmount-2.37.2-13.oe2203sp1.x86_64 rpm-libs-4.17.0-22.oe2203sp1.x86_64 bash-5.1.8-6.oe2203sp1.x86_64 libxcrypt-4.4.26-4.oe2203sp1.x86_64 libcap-ng-0.8.3-1.oe2203sp1.x86_64 shadow-4.9-9.oe2203sp1.x86_64 file-libs-5.41-2.oe2203sp1.x86_64 libtasn1-4.17.0-3.oe2203sp1.x86_64 lz4-1.9.3-3.oe2203sp1.x86_64 gmp-6.2.1-2.oe2203sp1.x86_64 gzip-1.11-5.oe2203sp1.x86_64 python3-hawkey-0.69.0-4.oe2203sp1.x86_64 yum-4.14.0-13.oe2203sp1.noarch glib2-2.72.2-10.oe2203sp1.x86_64 cpio-2.13-8.oe2203sp1.x86_64 rpm-4.17.0-22.oe2203sp1.x86_64 libgcrypt-1.9.4-3.oe2203sp1.x86_64 ima-evm-utils-libs-1.3.2-8.oe2203sp1.x86_64 tar-1.34-4.oe2203sp1.x86_64 file-5.41-2.oe2203sp1.x86_64 e2fsprogs-1.46.4-17.oe2203sp1.x86_64 audit-libs-3.0.1-6.oe2203sp1.x86_64 grep-3.7-4.oe2203sp1.x86_64 crontabs-1.11-23.oe2203sp1.noarch setup-2.13.9.1-1.oe2203sp1.noarch gnupg2-2.2.32-3.oe2203sp1.x86_64 dnf-data-4.14.0-13.oe2203sp1.noarch libarchive-3.5.2-5.oe2203sp1.x86_64 slang-2.3.2-9.oe2203sp1.x86_64 libmodulemd-2.13.0-3.oe2203sp1.x86_64 gcc-c++-10.3.1-22.oe2203sp1.x86_64 libreport-filesystem-2.15.2-2.oe2203sp1.noarch tcl-8.6.12-4.oe2203sp1.x86_64 gcc-10.3.1-22.oe2203sp1.x86_64 json-c-0.16-2.oe2203sp1.x86_64 dnf-4.14.0-13.oe2203sp1.noarch libfdisk-2.37.2-13.oe2203sp1.x86_64 popt-1.18-3.oe2203sp1.x86_64 glibc-2.34-112.oe2203sp1.x86_64 logrotate-3.20.1-1.oe2203sp1.x86_64 libblkid-2.37.2-13.oe2203sp1.x86_64 libpwquality-1.4.4-4.oe2203sp1.x86_64 systemd-libs-249-46.oe2203sp1.x86_64 sed-4.8-5.oe2203sp1.x86_64 libgomp-10.3.1-22.oe2203sp1.x86_64 libsmartcols-2.37.2-13.oe2203sp1.x86_64 openEuler-release-22.03LTS_SP1-56.oe2203sp1.x86_64 python3-dnf-4.14.0-13.oe2203sp1.noarch gmp-c++-6.2.1-2.oe2203sp1.x86_64 sqlite-3.37.2-5.oe2203sp1.x86_64 libgpg-error-1.43-2.oe2203sp1.x86_64 rpm-build-4.17.0-22.oe2203sp1.x86_64 elfutils-0.185-17.oe2203sp1.x86_64 krb5-libs-1.19.2-6.oe2203sp1.x86_64 patch-2.7.6-13.oe2203sp1.x86_64 bzip2-1.0.8-6.oe2203sp1.x86_64 babeltrace-1.5.8-3.oe2203sp1.x86_64 libksba-1.6.0-3.oe2203sp1.x86_64 isl-0.16.1-11.oe2203sp1.x86_64 ncurses-base-6.3-5.oe2203sp1.noarch libutempter-1.2.1-3.oe2203sp1.x86_64 fuse-2.9.9-11.oe2203sp1.x86_64 efi-srpm-macros-4-9.oe2203sp1.noarch p11-kit-0.24.0-2.oe2203sp1.x86_64 xz-5.2.5-3.oe2203sp1.x86_64 keyutils-libs-1.6.3-4.oe2203sp1.x86_64 zip-3.0-30.oe2203sp1.x86_64 python3-3.9.9-24.oe2203sp1.x86_64 openEuler-repos-1.0-3.5.oe2203sp1.x86_64 libev-4.33-4.oe2203sp1.x86_64 debugedit-5.0-5.oe2203sp1.x86_64 util-linux-2.37.2-13.oe2203sp1.x86_64 dwz-0.14-4.oe2203sp1.x86_64 attr-2.5.1-3.oe2203sp1.x86_64 libnghttp2-1.46.0-3.oe2203sp1.x86_64 npth-1.6-3.oe2203sp1.x86_64 newt-0.52.21-9.oe2203sp1.x86_64 p11-kit-trust-0.24.0-2.oe2203sp1.x86_64 librepo-1.14.2-4.oe2203sp1.x86_64 pkgconf-1.8.0-3.oe2203sp1.x86_64 basesystem-12-3.oe2203sp1.noarch publicsuffix-list-20211113-3.oe2203sp1.noarch isl-devel-0.16.1-11.oe2203sp1.x86_64 libselinux-3.3-2.oe2203sp1.x86_64 ncurses-6.3-5.oe2203sp1.x86_64 binutils-2.37-14.oe2203sp1.x86_64 python3-libdnf-0.69.0-4.oe2203sp1.x86_64 coreutils-9.0-6.oe2203sp1.x86_64 libtool-ltdl-2.4.7-1.oe2203sp1.x86_64 libcurl-7.79.1-17.oe2203sp1.x86_64 diffutils-3.8-3.oe2203sp1.x86_64 openEuler-rpm-config-30-33.oe2203sp1.x86_64 cyrus-sasl-lib-2.1.28-1.oe2203sp1.x86_64 pcre-8.45-5.oe2203sp1.x86_64 glibc-devel-2.34-112.oe2203sp1.x86_64 libtirpc-1.3.2-3.oe2203sp1.x86_64 Start: buildsrpm Start: rpmbuild -bs /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-ORG.asm-1.0.3-1.src.rpm Finish: rpmbuild -bs Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-lc7xne25/python-org-asm/python-org-asm.spec) Config(child) 2 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/python-ORG.asm-1.0.3-1.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1686472511.921166 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.9.9, NVR = mock-3.5-1)... Start(bootstrap): init plugins INFO: selinux disabled Finish(bootstrap): init plugins Start: init plugins INFO: selinux disabled Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/python-ORG.asm-1.0.3-1.src.rpm) Config(openeuler-22.03_LTS_SP1-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 88 kB/s | 1.5 kB 00:00 Copr repository 63 MB/s | 63 MB 00:00 OS 8.5 kB/s | 8.5 kB 00:00 OS 2.4 MB/s | 3.4 MB 00:01 everything 9.0 kB/s | 8.5 kB 00:00 everything 10 MB/s | 16 MB 00:01 EPOL 8.9 kB/s | 8.5 kB 00:00 EPOL 2.6 MB/s | 3.8 MB 00:01 update 6.9 kB/s | 8.5 kB 00:01 update 10 MB/s | 17 MB 00:01 EPOL update 6.5 kB/s | 8.5 kB 00:01 EPOL update 146 kB/s | 186 kB 00:01 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for python-ORG.asm-1.0.3-1.src.rpm Start: build setup for python-ORG.asm-1.0.3-1.src.rpm /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-ORG.asm-1.0.3-1.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 kB/s | 1.5 kB 00:00 OS 9.1 kB/s | 8.5 kB 00:00 OS 2.4 MB/s | 3.4 MB 00:01 everything 9.3 kB/s | 8.5 kB 00:00 everything 11 MB/s | 16 MB 00:01 EPOL 9.0 kB/s | 8.5 kB 00:00 EPOL 2.6 MB/s | 3.8 MB 00:01 update 9.1 kB/s | 8.5 kB 00:00 update 11 MB/s | 17 MB 00:01 EPOL update 8.6 kB/s | 8.5 kB 00:00 EPOL update 148 kB/s | 186 kB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-devel x86_64 3.9.9-24.oe2203sp1 update 12 M python3-pip noarch 23.1-1 copr_base 2.8 M python3-setuptools noarch 59.4.0-5.oe2203sp1 update 900 k Installing dependencies: dejavu-fonts noarch 2.37-2.oe2203sp1 OS 5.1 M fontconfig x86_64 2.13.94-2.oe2203sp1 OS 226 k fonts-filesystem noarch 4.0.2-2.oe2203sp1 OS 8.1 k freetype x86_64 2.12.1-2.oe2203sp1 update 371 k libX11 x86_64 1.7.2-5.oe2203sp1 OS 738 k libXau x86_64 1.0.10-1.oe2203sp1 OS 14 k libXft x86_64 2.3.4-2.oe2203sp1 OS 46 k libXrender x86_64 0.9.10-12.oe2203sp1 OS 25 k libxcb x86_64 1.15-1.oe2203sp1 OS 196 k python3-rpm-generators noarch 9-3.oe2203sp1 OS 24 k tk x86_64 1:8.6.12-1.oe2203sp1 OS 1.1 M Transaction Summary ================================================================================ Install 14 Packages Total download size: 23 M Installed size: 103 M Downloading Packages: (1/14): python3-pip-23.1-1.noarch.rpm 17 MB/s | 2.8 MB 00:00 (2/14): fontconfig-2.13.94-2.oe2203sp1.x86_64.r 1.0 MB/s | 226 kB 00:00 (3/14): fonts-filesystem-4.0.2-2.oe2203sp1.noar 52 kB/s | 8.1 kB 00:00 (4/14): libXau-1.0.10-1.oe2203sp1.x86_64.rpm 178 kB/s | 14 kB 00:00 (5/14): dejavu-fonts-2.37-2.oe2203sp1.noarch.rp 11 MB/s | 5.1 MB 00:00 (6/14): libX11-1.7.2-5.oe2203sp1.x86_64.rpm 3.1 MB/s | 738 kB 00:00 (7/14): libXft-2.3.4-2.oe2203sp1.x86_64.rpm 677 kB/s | 46 kB 00:00 (8/14): libxcb-1.15-1.oe2203sp1.x86_64.rpm 2.1 MB/s | 196 kB 00:00 (9/14): libXrender-0.9.10-12.oe2203sp1.x86_64.r 270 kB/s | 25 kB 00:00 (10/14): python3-rpm-generators-9-3.oe2203sp1.n 311 kB/s | 24 kB 00:00 (11/14): tk-8.6.12-1.oe2203sp1.x86_64.rpm 24 MB/s | 1.1 MB 00:00 (12/14): freetype-2.12.1-2.oe2203sp1.x86_64.rpm 7.6 MB/s | 371 kB 00:00 (13/14): python3-devel-3.9.9-24.oe2203sp1.x86_6 39 MB/s | 12 MB 00:00 (14/14): python3-setuptools-59.4.0-5.oe2203sp1. 3.0 MB/s | 900 kB 00:00 -------------------------------------------------------------------------------- Total 8.3 MB/s | 23 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-setuptools-59.4.0-5.oe2203sp1.noarch 1/14 Installing : freetype-2.12.1-2.oe2203sp1.x86_64 2/14 Running scriptlet: freetype-2.12.1-2.oe2203sp1.x86_64 2/14 Installing : fonts-filesystem-4.0.2-2.oe2203sp1.noarch 3/14 Installing : dejavu-fonts-2.37-2.oe2203sp1.noarch 4/14 Installing : fontconfig-2.13.94-2.oe2203sp1.x86_64 5/14 Running scriptlet: fontconfig-2.13.94-2.oe2203sp1.x86_64 5/14 Installing : python3-rpm-generators-9-3.oe2203sp1.noarch 6/14 Installing : libXau-1.0.10-1.oe2203sp1.x86_64 7/14 Installing : libxcb-1.15-1.oe2203sp1.x86_64 8/14 Installing : libX11-1.7.2-5.oe2203sp1.x86_64 9/14 Installing : libXrender-0.9.10-12.oe2203sp1.x86_64 10/14 Installing : libXft-2.3.4-2.oe2203sp1.x86_64 11/14 Running scriptlet: tk-1:8.6.12-1.oe2203sp1.x86_64 12/14 Installing : tk-1:8.6.12-1.oe2203sp1.x86_64 12/14 Installing : python3-devel-3.9.9-24.oe2203sp1.x86_64 13/14 Installing : python3-pip-23.1-1.noarch 14/14 Running scriptlet: python3-pip-23.1-1.noarch 14/14 Running scriptlet: fontconfig-2.13.94-2.oe2203sp1.x86_64 14/14 Verifying : python3-pip-23.1-1.noarch 1/14 Verifying : dejavu-fonts-2.37-2.oe2203sp1.noarch 2/14 Verifying : fontconfig-2.13.94-2.oe2203sp1.x86_64 3/14 Verifying : fonts-filesystem-4.0.2-2.oe2203sp1.noarch 4/14 Verifying : libX11-1.7.2-5.oe2203sp1.x86_64 5/14 Verifying : libXau-1.0.10-1.oe2203sp1.x86_64 6/14 Verifying : libXft-2.3.4-2.oe2203sp1.x86_64 7/14 Verifying : libXrender-0.9.10-12.oe2203sp1.x86_64 8/14 Verifying : libxcb-1.15-1.oe2203sp1.x86_64 9/14 Verifying : python3-rpm-generators-9-3.oe2203sp1.noarch 10/14 Verifying : tk-1:8.6.12-1.oe2203sp1.x86_64 11/14 Verifying : freetype-2.12.1-2.oe2203sp1.x86_64 12/14 Verifying : python3-devel-3.9.9-24.oe2203sp1.x86_64 13/14 Verifying : python3-setuptools-59.4.0-5.oe2203sp1.noarch 14/14 Installed: dejavu-fonts-2.37-2.oe2203sp1.noarch fontconfig-2.13.94-2.oe2203sp1.x86_64 fonts-filesystem-4.0.2-2.oe2203sp1.noarch freetype-2.12.1-2.oe2203sp1.x86_64 libX11-1.7.2-5.oe2203sp1.x86_64 libXau-1.0.10-1.oe2203sp1.x86_64 libXft-2.3.4-2.oe2203sp1.x86_64 libXrender-0.9.10-12.oe2203sp1.x86_64 libxcb-1.15-1.oe2203sp1.x86_64 python3-devel-3.9.9-24.oe2203sp1.x86_64 python3-pip-23.1-1.noarch python3-rpm-generators-9-3.oe2203sp1.noarch python3-setuptools-59.4.0-5.oe2203sp1.noarch tk-1:8.6.12-1.oe2203sp1.x86_64 Complete! Finish: build setup for python-ORG.asm-1.0.3-1.src.rpm Start: Outputting list of installed packages Finish: Outputting list of installed packages Start: rpmbuild python-ORG.asm-1.0.3-1.src.rpm /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ZjbNI1 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf ORG.asm-1.0.3 + /usr/bin/gzip -dc /builddir/build/SOURCES/ORG.asm-1.0.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd ORG.asm-1.0.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7SAxkV + umask 022 + cd /builddir/build/BUILD + cd ORG.asm-1.0.3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' ['/builddir/build/BUILD/ORG.asm-1.0.3', '/usr/lib64/python39.zip', '/usr/lib64/python3.9', '/usr/lib64/python3.9/lib-dynload', '/usr/lib64/python3.9/site-packages', '/usr/lib/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/distutils.ext', '/builddir/build/BUILD/ORG.asm-1.0.3/python'] ---------------- setup.py build --executable=/usr/bin/python3 -s ---------------- Installing ORG.asm (1.0.3) in serenity mode You are running the good python Restarting installation within the ORG.asm-1.0.3 virtualenv Install script restarting... ['/builddir/build/BUILD/ORG.asm-1.0.3', '/usr/lib64/python39.zip', '/usr/lib64/python3.9', '/usr/lib64/python3.9/lib-dynload', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/distutils.ext', '/builddir/build/BUILD/ORG.asm-1.0.3/python'] ---------------- setup.py build --executable=/usr/bin/python3 -s ---------------- Installing ORG.asm (1.0.3) in serenity mode You are running the good python ORG.asm will be installed with python : /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/python Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : not installed Installing requirement : Cython Looking in indexes: https://pypi.org/simple, https://pypi.python.org/simple/ WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')': /simple/cython/ Collecting Cython Downloading Cython-0.29.35-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (2.0 MB) Requirement already satisfied: pip in ./ORG.asm-1.0.3/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (21.3.1) Collecting Sphinx Downloading sphinx-7.0.1-py3-none-any.whl (3.0 MB) Collecting imagesize>=1.3 Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting alabaster<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting sphinxcontrib-serializinghtml>=1.1.5 Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting requests>=2.25.0 Downloading requests-2.31.0-py3-none-any.whl (62 kB) Collecting babel>=2.9 Downloading Babel-2.12.1-py3-none-any.whl (10.1 MB) Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl (99 kB) Collecting docutils<0.21,>=0.18.1 Downloading docutils-0.20.1-py3-none-any.whl (572 kB) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting snowballstemmer>=2.0 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Collecting importlib-metadata>=4.8 Downloading importlib_metadata-6.6.0-py3-none-any.whl (22 kB) Collecting Jinja2>=3.0 Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB) Collecting Pygments>=2.13 Downloading Pygments-2.15.1-py3-none-any.whl (1.1 MB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.4-py3-none-any.whl (120 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting packaging>=21.0 Downloading packaging-23.1-py3-none-any.whl (48 kB) Collecting zipp>=0.5 Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting certifi>=2017.4.17 Downloading certifi-2023.5.7-py3-none-any.whl (156 kB) Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) Collecting urllib3<3,>=1.21.1 Downloading urllib3-2.0.3-py3-none-any.whl (123 kB) Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) Installing collected packages: zipp, urllib3, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, requests, Pygments, packaging, Jinja2, importlib-metadata, imagesize, docutils, babel, alabaster, Sphinx, Cython Successfully installed Cython-0.29.35 Jinja2-3.1.2 MarkupSafe-2.1.3 Pygments-2.15.1 Sphinx-7.0.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 docutils-0.20.1 idna-3.4 imagesize-1.4.1 importlib-metadata-6.6.0 packaging-23.1 requests-2.31.0 snowballstemmer-2.2.0 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 urllib3-2.0.3 zipp-3.15.0 WARNING: You are using pip version 21.3.1; however, version 23.1.2 is available. You should consider upgrading via the '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/python3 -m pip install --upgrade pip' command. Look for package Sphinx : ok version 7.0.1 installed Restarting installation with all dependencies ok Install script restarting... ['/builddir/build/BUILD/ORG.asm-1.0.3', '/usr/lib64/python39.zip', '/usr/lib64/python3.9', '/usr/lib64/python3.9/lib-dynload', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/distutils.ext', '/builddir/build/BUILD/ORG.asm-1.0.3/python'] ---------------- setup.py build --executable=/usr/bin/python3 -s ---------------- Installing ORG.asm (1.0.3) in serenity mode You are running the good python ORG.asm will be installed with python : /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/python Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed You are running the good python Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/buffer.c', 'src/buildindex.c', '@code16bits.c', '@codecomp.c', 'src/compsort.c', 'src/debug.c', 'src/debug.h', 'src/decode.c', 'src/encode.c', 'src/fastq.c', 'src/indexinput.c', 'src/indexoutput.c', 'src/load.c', 'src/lookfor.c', 'src/malloc.c', 'src/orgasm.h', 'src/sort.c', 'src/fgetln.c', 'fiboheap/fibo.h'] Cython module : [] Cython module : [] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h'] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h', '@expand8bits.c'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/orgasm.h'] running build running littlebigman creating build creating build/temp.linux-x86_64-3.9 building 'littlebigman' program creating build/temp.linux-x86_64-3.9/distutils.ext creating build/temp.linux-x86_64-3.9/distutils.ext/src gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -c distutils.ext/src/littlebigman.c -o build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -msse2 distutils.ext/src/littlebigman.c: In function ‘main’: distutils.ext/src/littlebigman.c:20:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 20 | else | ^~~~ distutils.ext/src/littlebigman.c:23:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 23 | return 0; | ^~~~~~ gcc build/temp.linux-x86_64-3.9/distutils.ext/src/littlebigman.o -o build/temp.linux-x86_64-3.9/littlebigman Your CPU is in mode : -DLITTLE_END running build_py creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/orgasm copying python/orgasm/version.py -> build/lib.linux-x86_64-3.9/orgasm copying python/orgasm/config.py -> build/lib.linux-x86_64-3.9/orgasm copying python/orgasm/tango.py -> build/lib.linux-x86_64-3.9/orgasm copying python/orgasm/__init__.py -> build/lib.linux-x86_64-3.9/orgasm creating build/lib.linux-x86_64-3.9/orgasm/graph copying python/orgasm/graph/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/graph creating build/lib.linux-x86_64-3.9/orgasm/files copying python/orgasm/files/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/files creating build/lib.linux-x86_64-3.9/orgasm/apps copying python/orgasm/apps/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/apps creating build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/index.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/graphstats.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/cutlow.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/restore.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/graph.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/clone.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/substract.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/unfoldrdna.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/unfold.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/list.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/seeds.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/compact.py -> build/lib.linux-x86_64-3.9/orgasm/commands copying python/orgasm/commands/buildgraph.py -> build/lib.linux-x86_64-3.9/orgasm/commands creating build/lib.linux-x86_64-3.9/orgasm/format copying python/orgasm/format/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/format creating build/lib.linux-x86_64-3.9/orgasm/utils copying python/orgasm/utils/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/utils creating build/lib.linux-x86_64-3.9/orgasm/samples copying python/orgasm/samples/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/samples copying python/orgasm/samples/phix.py -> build/lib.linux-x86_64-3.9/orgasm/samples creating build/lib.linux-x86_64-3.9/orgasm/indexer copying python/orgasm/indexer/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/indexer creating build/lib.linux-x86_64-3.9/orgasm/reads copying python/orgasm/reads/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/reads creating build/lib.linux-x86_64-3.9/orgasm/backtranslate copying python/orgasm/backtranslate/fasta.py -> build/lib.linux-x86_64-3.9/orgasm/backtranslate copying python/orgasm/backtranslate/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/backtranslate creating build/lib.linux-x86_64-3.9/orgasm/fiboheap copying python/orgasm/fiboheap/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/fiboheap creating build/lib.linux-x86_64-3.9/orgasm/assembler copying python/orgasm/assembler/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/assembler creating build/lib.linux-x86_64-3.9/orgasm/multialign copying python/orgasm/multialign/__init__.py -> build/lib.linux-x86_64-3.9/orgasm/multialign running build_ext Look for CPU architecture... [('LITTLE_END', None)] running build_files running build_ctools building 'buildcomplement' program creating build/temp.linux-x86_64-3.9/src gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/buildcomplement.c -o build/temp.linux-x86_64-3.9/src/buildcomplement.o -msse2 gcc build/temp.linux-x86_64-3.9/src/buildcomplement.o -o build/temp.linux-x86_64-3.9/buildcomplement building 'buildcode' program gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/buildcode.c -o build/temp.linux-x86_64-3.9/src/buildcode.o -msse2 src/buildcode.c: In function ‘main’: src/buildcode.c:44:39: warning: format ‘%llX’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 44 | fprintf(stdout," INT64_C(0x%16llX), // %04X --> %8s \n", *((uint64_t*)nuc),code,nuc); | ~~~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %16lX src/buildcode.c:46:39: warning: format ‘%llX’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 46 | fprintf(stdout," INT64_C(0x%16llX) // %04X --> %8s \n", *((uint64_t*)nuc),code,nuc); | ~~~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %16lX gcc build/temp.linux-x86_64-3.9/src/buildcode.o -o build/temp.linux-x86_64-3.9/buildcode building 'buildexpand8bits' program gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/buildexpand8bits.c -o build/temp.linux-x86_64-3.9/src/buildexpand8bits.o -msse2 src/buildexpand8bits.c: In function ‘main’: src/buildexpand8bits.c:40:1: warning: multi-line comment [-Wcomment] 40 | // *((uint32_t*)nuc) = *((uint32_t*)nuc) >> 24 | \ | ^ gcc build/temp.linux-x86_64-3.9/src/buildexpand8bits.o -o build/temp.linux-x86_64-3.9/buildexpand8bits Building file : codecomp.c --> build/temp.linux-x86_64-3.9/buildcomplement > build/temp.linux-x86_64-3.9/codecomp.c Done. Building file : code16bits.c --> build/temp.linux-x86_64-3.9/buildcode > build/temp.linux-x86_64-3.9/code16bits.c Done. Building file : expand8bits.c --> build/temp.linux-x86_64-3.9/buildexpand8bits > build/temp.linux-x86_64-3.9/expand8bits.c Done. running build_cexe Look for CPU architecture... [('LITTLE_END', None)] creating build/scripts-3.9 orgasmi :-> src/orgasmi.c ok orgasmi :-> src/buffer.c ok orgasmi :-> src/buildindex.c ok orgasmi :-> @code16bits.c changed to build/temp.linux-x86_64-3.9/code16bits.c orgasmi :-> @codecomp.c changed to build/temp.linux-x86_64-3.9/codecomp.c orgasmi :-> src/compsort.c ok orgasmi :-> src/debug.c ok orgasmi :-> src/decode.c ok orgasmi :-> src/encode.c ok orgasmi :-> src/fastq.c ok orgasmi :-> src/indexinput.c ok orgasmi :-> src/indexoutput.c ok orgasmi :-> src/load.c ok orgasmi :-> src/lookfor.c ok orgasmi :-> src/malloc.c ok orgasmi :-> src/fgetln.c ok orgasmi :-> src/sort.c ok building 'orgasmi' program creating build/temp.linux-x86_64-3.9/build creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/orgasmi.c -o build/temp.linux-x86_64-3.9/src/orgasmi.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/buffer.c -o build/temp.linux-x86_64-3.9/src/buffer.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/buildindex.c -o build/temp.linux-x86_64-3.9/src/buildindex.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c build/temp.linux-x86_64-3.9/code16bits.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/code16bits.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c build/temp.linux-x86_64-3.9/codecomp.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/codecomp.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/compsort.c -o build/temp.linux-x86_64-3.9/src/compsort.o -msse2 src/compsort.c: In function ‘sortCompSuffix’: src/compsort.c:305:9: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 305 | if (i > nextprint) | ^ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/debug.c -o build/temp.linux-x86_64-3.9/src/debug.o -msse2 src/debug.c: In function ‘int2bin’: src/debug.c:23:10: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 23 | u = *(unsigned *)&i; | ^~~~~~~~~~~~~~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/decode.c -o build/temp.linux-x86_64-3.9/src/decode.o -msse2 src/decode.c: In function ‘decodeComp’: src/decode.c:96:13: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (i=0; i0 && forwardLength= readLength) && (reverseLength >= readLength)) { | ^~ src/fastq.c:171:54: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 171 | if ((forwardLength >= readLength) && (reverseLength >= readLength)) { | ^~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/indexinput.c -o build/temp.linux-x86_64-3.9/src/indexinput.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/indexoutput.c -o build/temp.linux-x86_64-3.9/src/indexoutput.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/load.c -o build/temp.linux-x86_64-3.9/src/load.o -msse2 src/load.c: In function ‘indexReverseComplement’: src/load.c:19:13: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | for (i=0;i < reads->readCount; i++) | ^ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/lookfor.c -o build/temp.linux-x86_64-3.9/src/lookfor.o -msse2 src/lookfor.c: In function ‘shiftKey’: src/lookfor.c:47:10: warning: variable ‘rmask’ set but not used [-Wunused-but-set-variable] 47 | uint8_t rmask; | ^~~~~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/malloc.c -o build/temp.linux-x86_64-3.9/src/malloc.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/fgetln.c -o build/temp.linux-x86_64-3.9/src/fgetln.o -msse2 gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -c src/sort.c -o build/temp.linux-x86_64-3.9/src/sort.o -msse2 src/sort.c: In function ‘sortSuffix’: src/sort.c:406:9: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 406 | if (i > nextprint) | ^ src/sort.c: In function ‘indexForward’: src/sort.c:435:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for (i=0; i < buffer->readCount; i++) | ^ src/sort.c: In function ‘indexReverse’: src/sort.c:468:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 468 | for (i=0; i < buffer->readCount; i++) | ^ gcc build/temp.linux-x86_64-3.9/src/orgasmi.o build/temp.linux-x86_64-3.9/src/buffer.o build/temp.linux-x86_64-3.9/src/buildindex.o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/code16bits.o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/codecomp.o build/temp.linux-x86_64-3.9/src/compsort.o build/temp.linux-x86_64-3.9/src/debug.o build/temp.linux-x86_64-3.9/src/decode.o build/temp.linux-x86_64-3.9/src/encode.o build/temp.linux-x86_64-3.9/src/fastq.o build/temp.linux-x86_64-3.9/src/indexinput.o build/temp.linux-x86_64-3.9/src/indexoutput.o build/temp.linux-x86_64-3.9/src/load.o build/temp.linux-x86_64-3.9/src/lookfor.o build/temp.linux-x86_64-3.9/src/malloc.o build/temp.linux-x86_64-3.9/src/fgetln.o build/temp.linux-x86_64-3.9/src/sort.o -o build/scripts-3.9/orgasmi orgasm.graph._fibominintheap :-> python/orgasm/graph/_fibominintheap.pyx ok orgasm.graph._fibominintheap :-> fiboheap/fibo.c ok orgasm.graph._graphmultiedge :-> python/orgasm/graph/_graphmultiedge.pyx ok orgasm.graph._graph :-> python/orgasm/graph/_graph.pyx ok orgasm.graph._fibomaxintheap :-> python/orgasm/graph/_fibomaxintheap.pyx ok orgasm.graph._fibomaxintheap :-> fiboheap/fibo.c ok orgasm.graph._fibointheap :-> python/orgasm/graph/_fibointheap.pyx ok orgasm.graph._fibointheap :-> fiboheap/fibo.c ok orgasm.files.uncompress :-> python/orgasm/files/uncompress.pyx ok orgasm.files.linebuffer :-> python/orgasm/files/linebuffer.pyx ok orgasm.files.universalopener :-> python/orgasm/files/universalopener.pyx ok orgasm.apps.arguments :-> python/orgasm/apps/arguments.pyx ok orgasm.apps.counter :-> python/orgasm/apps/counter.pyx ok orgasm.apps.command :-> python/orgasm/apps/command.pyx ok orgasm.apps.config :-> python/orgasm/apps/config.pyx ok orgasm.apps.logging :-> python/orgasm/apps/logging.pyx ok orgasm.apps.progress :-> python/orgasm/apps/progress.pyx ok orgasm.format.sam :-> python/orgasm/format/sam.pyx ok orgasm.utils.dna :-> python/orgasm/utils/dna.pyx ok orgasm.utils._progress :-> python/orgasm/utils/_progress.pyx ok orgasm.indexer.fakereads :-> python/orgasm/indexer/fakereads.pyx ok orgasm.indexer._orgasm :-> python/orgasm/indexer/_orgasm.pyx ok orgasm.indexer._orgasm :-> src/buffer.c ok orgasm.indexer._orgasm :-> src/buildindex.c ok orgasm.indexer._orgasm :-> @code16bits.c changed to build/temp.linux-x86_64-3.9/code16bits.c orgasm.indexer._orgasm :-> @codecomp.c changed to build/temp.linux-x86_64-3.9/codecomp.c orgasm.indexer._orgasm :-> src/compsort.c ok orgasm.indexer._orgasm :-> src/debug.c ok orgasm.indexer._orgasm :-> src/decode.c ok orgasm.indexer._orgasm :-> src/encode.c ok orgasm.indexer._orgasm :-> src/fastq.c ok orgasm.indexer._orgasm :-> src/indexinput.c ok orgasm.indexer._orgasm :-> src/indexoutput.c ok orgasm.indexer._orgasm :-> src/load.c ok orgasm.indexer._orgasm :-> src/lookfor.c ok orgasm.indexer._orgasm :-> src/malloc.c ok orgasm.indexer._orgasm :-> src/sort.c ok orgasm.indexer._orgasm :-> src/fgetln.c ok orgasm.reads._fasta :-> python/orgasm/reads/_fasta.pyx ok orgasm.reads._fastq :-> python/orgasm/reads/_fastq.pyx ok orgasm.reads._sequences :-> python/orgasm/reads/_sequences.pyx ok orgasm.backtranslate._bitvector :-> python/orgasm/backtranslate/_bitvector.pyx ok orgasm.backtranslate._ahocorasick :-> python/orgasm/backtranslate/_ahocorasick.pyx ok orgasm.backtranslate._ahocorasick :-> @expand8bits.c changed to build/temp.linux-x86_64-3.9/expand8bits.c orgasm.fiboheap._fiboheap :-> python/orgasm/fiboheap/_fiboheap.pyx ok orgasm.fiboheap._fiboheap :-> fiboheap/fibo.c ok orgasm.assembler._asmbgraph :-> python/orgasm/assembler/_asmbgraph.pyx ok orgasm.assembler._tango :-> python/orgasm/assembler/_tango.pyx ok orgasm.assembler._assembler :-> python/orgasm/assembler/_assembler.pyx ok orgasm.multialign._multi :-> python/orgasm/multialign/_multi.pyx ok orgasm.multialign._dynamic :-> python/orgasm/multialign/_dynamic.pyx ok orgasm.graph._fibominintheap :-> ['python/orgasm/graph/_fibominintheap.pyx', 'fiboheap/fibo.c'] cythoning python/orgasm/graph/_fibominintheap.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibominintheap.c creating build/temp.linux-x86_64-3.9/pyrex creating build/temp.linux-x86_64-3.9/pyrex/orgasm creating build/temp.linux-x86_64-3.9/pyrex/orgasm/graph building 'orgasm.graph._fibominintheap' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph creating build/temp.linux-x86_64-3.9/fiboheap gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibominintheap.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibominintheap.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c fiboheap/fibo.c -o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibominintheap.o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/graph/_fibominintheap.cpython-39-x86_64-linux-gnu.so orgasm.graph._graphmultiedge :-> ['python/orgasm/graph/_graphmultiedge.pyx'] cythoning python/orgasm/graph/_graphmultiedge.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graphmultiedge.c building 'orgasm.graph._graphmultiedge' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graphmultiedge.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graphmultiedge.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graphmultiedge.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/graph/_graphmultiedge.cpython-39-x86_64-linux-gnu.so orgasm.graph._graph :-> ['python/orgasm/graph/_graph.pyx'] cythoning python/orgasm/graph/_graph.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graph.c building 'orgasm.graph._graph' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graph.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graph.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_graph.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/graph/_graph.cpython-39-x86_64-linux-gnu.so orgasm.graph._fibomaxintheap :-> ['python/orgasm/graph/_fibomaxintheap.pyx', 'fiboheap/fibo.c'] cythoning python/orgasm/graph/_fibomaxintheap.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibomaxintheap.c building 'orgasm.graph._fibomaxintheap' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibomaxintheap.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibomaxintheap.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c fiboheap/fibo.c -o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibomaxintheap.o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/graph/_fibomaxintheap.cpython-39-x86_64-linux-gnu.so orgasm.graph._fibointheap :-> ['python/orgasm/graph/_fibointheap.pyx', 'fiboheap/fibo.c'] cythoning python/orgasm/graph/_fibointheap.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibointheap.c building 'orgasm.graph._fibointheap' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibointheap.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibointheap.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c fiboheap/fibo.c -o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/graph/_fibointheap.o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/graph/_fibointheap.cpython-39-x86_64-linux-gnu.so orgasm.files.uncompress :-> ['python/orgasm/files/uncompress.pyx'] cythoning python/orgasm/files/uncompress.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/files/uncompress.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/files building 'orgasm.files.uncompress' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/files/uncompress.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/uncompress.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/uncompress.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/files/uncompress.cpython-39-x86_64-linux-gnu.so orgasm.files.linebuffer :-> ['python/orgasm/files/linebuffer.pyx'] cythoning python/orgasm/files/linebuffer.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/files/linebuffer.c building 'orgasm.files.linebuffer' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/files/linebuffer.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/linebuffer.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/linebuffer.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/files/linebuffer.cpython-39-x86_64-linux-gnu.so orgasm.files.universalopener :-> ['python/orgasm/files/universalopener.pyx'] cythoning python/orgasm/files/universalopener.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/files/universalopener.c building 'orgasm.files.universalopener' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/files/universalopener.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/universalopener.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/files/universalopener.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/files/universalopener.cpython-39-x86_64-linux-gnu.so orgasm.apps.arguments :-> ['python/orgasm/apps/arguments.pyx'] cythoning python/orgasm/apps/arguments.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/arguments.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/apps building 'orgasm.apps.arguments' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/arguments.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/arguments.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/arguments.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/arguments.cpython-39-x86_64-linux-gnu.so orgasm.apps.counter :-> ['python/orgasm/apps/counter.pyx'] cythoning python/orgasm/apps/counter.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c building 'orgasm.apps.counter' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.o build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c: In function ‘__pyx_pf_6orgasm_4apps_7counter_15ProgressCounter_2__call__’: build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c:2531:47: warning: field width specifier ‘*’ expects argument of type ‘int’, but argument 4 has type ‘long long unsigned int’ [-Wformat=] 2531 | ((void)fprintf(stderr, ((char *)"\r%s [%*d] speed : %*.1f %s/s"), __pyx_v_self->chead, __pyx_v_self->digits, __pyx_v_ipos, __pyx_v_self->digits, __pyx_v_speed, __pyx_v_self->cunit)); | ~^~ ~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c:2531:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long long unsigned int’ [-Wformat=] 2531 | ((void)fprintf(stderr, ((char *)"\r%s [%*d] speed : %*.1f %s/s"), __pyx_v_self->chead, __pyx_v_self->digits, __pyx_v_ipos, __pyx_v_self->digits, __pyx_v_speed, __pyx_v_self->cunit)); | ~~^ ~~~~~~~~~~~~ | | | | int long long unsigned int | %*lld build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.c:2531:60: warning: field width specifier ‘*’ expects argument of type ‘int’, but argument 6 has type ‘long long unsigned int’ [-Wformat=] 2531 | ((void)fprintf(stderr, ((char *)"\r%s [%*d] speed : %*.1f %s/s"), __pyx_v_self->chead, __pyx_v_self->digits, __pyx_v_ipos, __pyx_v_self->digits, __pyx_v_speed, __pyx_v_self->cunit)); | ~^~~~ ~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/counter.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/counter.cpython-39-x86_64-linux-gnu.so orgasm.apps.command :-> ['python/orgasm/apps/command.pyx'] cythoning python/orgasm/apps/command.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/command.c building 'orgasm.apps.command' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/command.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/command.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/command.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/command.cpython-39-x86_64-linux-gnu.so orgasm.apps.config :-> ['python/orgasm/apps/config.pyx'] cythoning python/orgasm/apps/config.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/config.c building 'orgasm.apps.config' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/config.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/config.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/config.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/config.cpython-39-x86_64-linux-gnu.so orgasm.apps.logging :-> ['python/orgasm/apps/logging.pyx'] cythoning python/orgasm/apps/logging.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/logging.c building 'orgasm.apps.logging' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/logging.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/logging.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/logging.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/logging.cpython-39-x86_64-linux-gnu.so orgasm.apps.progress :-> ['python/orgasm/apps/progress.pyx'] cythoning python/orgasm/apps/progress.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c building 'orgasm.apps.progress' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.o build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c: In function ‘__pyx_pf_6orgasm_4apps_8progress_11ProgressBar_2__call__’: build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c:2640:59: warning: field precision specifier ‘.*’ expects argument of type ‘int’, but argument 5 has type ‘long long unsigned int’ [-Wformat=] 2640 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), __pyx_v_self->chead, (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_self->diese, (__pyx_v_self->wheel[__pyx_v_self->arrow]), (50 - __pyx_v_fraction), __pyx_v_self->spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c:2640:65: warning: field precision specifier ‘.*’ expects argument of type ‘int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2640 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %d days %02d:%02d:%02d"), __pyx_v_self->chead, (__pyx_v_percent * 100.0), __pyx_v_fraction, __pyx_v_self->diese, (__pyx_v_self->wheel[__pyx_v_self->arrow]), (50 - __pyx_v_fraction), __pyx_v_self->spaces, __pyx_v_days, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c:2668:59: warning: field precision specifier ‘.*’ expects argument of type ‘int’, but argument 5 has type ‘long long unsigned int’ [-Wformat=] 2668 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), __pyx_v_self->chead, (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_self->diese, (__pyx_v_self->wheel[__pyx_v_self->arrow]), (50 - __pyx_v_fraction), __pyx_v_self->spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~ | | | | int long long unsigned int build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.c:2668:65: warning: field precision specifier ‘.*’ expects argument of type ‘int’, but argument 8 has type ‘long long unsigned int’ [-Wformat=] 2668 | ((void)fprintf(stderr, ((char *)"\r%s %5.1f %% |%.*s%c%.*s] remain : %02d:%02d:%02d"), __pyx_v_self->chead, (__pyx_v_percent * 100.), __pyx_v_fraction, __pyx_v_self->diese, (__pyx_v_self->wheel[__pyx_v_self->arrow]), (50 - __pyx_v_fraction), __pyx_v_self->spaces, __pyx_v_hour, __pyx_v_minu, __pyx_v_sec)); | ~~^~ ~~~~~~~~~~~~~~~~~~~~~~~ | | | | int long long unsigned int gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/apps/progress.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/apps/progress.cpython-39-x86_64-linux-gnu.so orgasm.format.sam :-> ['python/orgasm/format/sam.pyx'] cythoning python/orgasm/format/sam.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/format/sam.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/format building 'orgasm.format.sam' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/format gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/format/sam.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/format/sam.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/format/sam.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/format/sam.cpython-39-x86_64-linux-gnu.so orgasm.utils.dna :-> ['python/orgasm/utils/dna.pyx'] cythoning python/orgasm/utils/dna.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/dna.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/utils building 'orgasm.utils.dna' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/utils gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/dna.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/dna.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/dna.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/utils/dna.cpython-39-x86_64-linux-gnu.so orgasm.utils._progress :-> ['python/orgasm/utils/_progress.pyx'] cythoning python/orgasm/utils/_progress.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/_progress.c building 'orgasm.utils._progress' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/_progress.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/_progress.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/utils/_progress.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/utils/_progress.cpython-39-x86_64-linux-gnu.so orgasm.indexer.fakereads :-> ['python/orgasm/indexer/fakereads.pyx'] cythoning python/orgasm/indexer/fakereads.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer building 'orgasm.indexer.fakereads' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.o build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c: In function ‘__pyx_f_6orgasm_7indexer_9fakereads_9FakeReads_isFake’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c:1845:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1845 | __pyx_t_7 = ((abs(__pyx_v_id) >= __pyx_v_self->_firstid) != 0); | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c:1851:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1851 | __pyx_t_7 = ((abs(__pyx_v_id) < __pyx_v_self->_nextid) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c: In function ‘__pyx_f_6orgasm_7indexer_9fakereads_9FakeReads__getid’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c:2080:53: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2080 | if (unlikely(!((PyBytes_GET_SIZE(__pyx_v_seq) == __pyx_v_self->_readsize) != 0))) { | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.c:941:43: note: in definition of macro ‘unlikely’ 941 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/fakereads.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/indexer/fakereads.cpython-39-x86_64-linux-gnu.so orgasm.indexer._orgasm :-> ['python/orgasm/indexer/_orgasm.pyx', 'src/buffer.c', 'src/buildindex.c', 'build/temp.linux-x86_64-3.9/code16bits.c', 'build/temp.linux-x86_64-3.9/codecomp.c', 'src/compsort.c', 'src/debug.c', 'src/decode.c', 'src/encode.c', 'src/fastq.c', 'src/indexinput.c', 'src/indexoutput.c', 'src/load.c', 'src/lookfor.c', 'src/malloc.c', 'src/sort.c', 'src/fgetln.c'] cythoning python/orgasm/indexer/_orgasm.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c building 'orgasm.indexer._orgasm' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/code16bits.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/code16bits.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/codecomp.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/codecomp.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c: In function ‘__pyx_f_6orgasm_7indexer_7_orgasm_5Index_getRead’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:4708:35: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 4708 | if (unlikely(!((__pyx_v_begin < __pyx_v_self->_index->readSize) != 0))) { | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:955:43: note: in definition of macro ‘unlikely’ 955 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:4724:54: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 4724 | if (unlikely(!(((__pyx_v_begin + __pyx_v_length) <= __pyx_v_self->_index->readSize) != 0))) { | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:955:43: note: in definition of macro ‘unlikely’ 955 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:4776:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 4776 | __pyx_t_11 = ((abs(__pyx_v_readid) > __pyx_v_self->_index->readCount) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c: In function ‘__pyx_f_6orgasm_7indexer_7_orgasm_5Index_getReadIds’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:7492:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7492 | if (unlikely(!((__pyx_t_5 == __pyx_v_self->_index->readSize) != 0))) { | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:955:43: note: in definition of macro ‘unlikely’ 955 | #define unlikely(x) __builtin_expect(!!(x), 0) | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c: In function ‘__pyx_f_6orgasm_7indexer_7_orgasm_5Index_getPairedRead’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:7861:29: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7861 | __pyx_t_7 = ((__pyx_v_iid > __pyx_v_self->_index->readCount) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c: In function ‘__pyx_f_6orgasm_7indexer_7_orgasm_5Index_getIds’: build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:9850:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 9850 | __pyx_t_6 = ((__pyx_v_y > __pyx_v_self->_index->readCount) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:662:40: warning: ‘__pyx_v_t’ may be used uninitialized in this function [-Wmaybe-uninitialized] 662 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.c:9685:7: note: ‘__pyx_v_t’ was declared here 9685 | int __pyx_v_t; | ^~~~~~~~~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/buffer.c -o build/temp.linux-x86_64-3.9/src/buffer.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/buildindex.c -o build/temp.linux-x86_64-3.9/src/buildindex.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/compsort.c -o build/temp.linux-x86_64-3.9/src/compsort.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/compsort.c: In function ‘sortCompSuffix’: src/compsort.c:305:9: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 305 | if (i > nextprint) | ^ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/debug.c -o build/temp.linux-x86_64-3.9/src/debug.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/debug.c: In function ‘int2bin’: src/debug.c:23:10: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 23 | u = *(unsigned *)&i; | ^~~~~~~~~~~~~~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/decode.c -o build/temp.linux-x86_64-3.9/src/decode.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/decode.c: In function ‘decodeComp’: src/decode.c:96:13: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (i=0; i0 && forwardLength= readLength) && (reverseLength >= readLength)) { | ^~ src/fastq.c:171:54: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 171 | if ((forwardLength >= readLength) && (reverseLength >= readLength)) { | ^~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/fgetln.c -o build/temp.linux-x86_64-3.9/src/fgetln.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/indexinput.c -o build/temp.linux-x86_64-3.9/src/indexinput.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/indexoutput.c -o build/temp.linux-x86_64-3.9/src/indexoutput.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/load.c -o build/temp.linux-x86_64-3.9/src/load.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/load.c: In function ‘indexReverseComplement’: src/load.c:19:13: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 19 | for (i=0;i < reads->readCount; i++) | ^ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/lookfor.c -o build/temp.linux-x86_64-3.9/src/lookfor.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/lookfor.c: In function ‘shiftKey’: src/lookfor.c:47:10: warning: variable ‘rmask’ set but not used [-Wunused-but-set-variable] 47 | uint8_t rmask; | ^~~~~ gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/malloc.c -o build/temp.linux-x86_64-3.9/src/malloc.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c src/sort.c -o build/temp.linux-x86_64-3.9/src/sort.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts src/sort.c: In function ‘sortSuffix’: src/sort.c:406:9: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 406 | if (i > nextprint) | ^ src/sort.c: In function ‘indexForward’: src/sort.c:435:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for (i=0; i < buffer->readCount; i++) | ^ src/sort.c: In function ‘indexReverse’: src/sort.c:468:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 468 | for (i=0; i < buffer->readCount; i++) | ^ gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/code16bits.o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/codecomp.o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/indexer/_orgasm.o build/temp.linux-x86_64-3.9/src/buffer.o build/temp.linux-x86_64-3.9/src/buildindex.o build/temp.linux-x86_64-3.9/src/compsort.o build/temp.linux-x86_64-3.9/src/debug.o build/temp.linux-x86_64-3.9/src/decode.o build/temp.linux-x86_64-3.9/src/encode.o build/temp.linux-x86_64-3.9/src/fastq.o build/temp.linux-x86_64-3.9/src/fgetln.o build/temp.linux-x86_64-3.9/src/indexinput.o build/temp.linux-x86_64-3.9/src/indexoutput.o build/temp.linux-x86_64-3.9/src/load.o build/temp.linux-x86_64-3.9/src/lookfor.o build/temp.linux-x86_64-3.9/src/malloc.o build/temp.linux-x86_64-3.9/src/sort.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/indexer/_orgasm.cpython-39-x86_64-linux-gnu.so orgasm.reads._fasta :-> ['python/orgasm/reads/_fasta.pyx'] cythoning python/orgasm/reads/_fasta.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fasta.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/reads /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/ORG.asm-1.0.3/python/orgasm/reads/_fasta.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'orgasm.reads._fasta' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fasta.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fasta.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fasta.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/reads/_fasta.cpython-39-x86_64-linux-gnu.so orgasm.reads._fastq :-> ['python/orgasm/reads/_fastq.pyx'] cythoning python/orgasm/reads/_fastq.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fastq.c /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/ORG.asm-1.0.3/python/orgasm/reads/_fastq.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'orgasm.reads._fastq' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fastq.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fastq.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_fastq.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/reads/_fastq.cpython-39-x86_64-linux-gnu.so orgasm.reads._sequences :-> ['python/orgasm/reads/_sequences.pyx'] cythoning python/orgasm/reads/_sequences.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/ORG.asm-1.0.3/python/orgasm/reads/_sequences.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'orgasm.reads._sequences' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c: In function ‘__pyx_f_6orgasm_5reads_10_sequences_bestQuality.constprop.isra’: build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c:662:40: warning: ‘__pyx_v_maxend’ may be used uninitialized in this function [-Wmaybe-uninitialized] 662 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c:5680:7: note: ‘__pyx_v_maxend’ was declared here 5680 | int __pyx_v_maxend; | ^~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c:662:40: warning: ‘__pyx_v_maxbegin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 662 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c:5679:7: note: ‘__pyx_v_maxbegin’ was declared here 5679 | int __pyx_v_maxbegin; | ^~~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.c:5822:8: warning: ‘__pyx_v_maxscore’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5822 | if (__pyx_t_2) { | ^ gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/reads/_sequences.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/reads/_sequences.cpython-39-x86_64-linux-gnu.so orgasm.backtranslate._bitvector :-> ['python/orgasm/backtranslate/_bitvector.pyx'] cythoning python/orgasm/backtranslate/_bitvector.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_bitvector.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate building 'orgasm.backtranslate._bitvector' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_bitvector.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_bitvector.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_bitvector.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/backtranslate/_bitvector.cpython-39-x86_64-linux-gnu.so orgasm.backtranslate._ahocorasick :-> ['python/orgasm/backtranslate/_ahocorasick.pyx', 'build/temp.linux-x86_64-3.9/expand8bits.c'] cythoning python/orgasm/backtranslate/_ahocorasick.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c building 'orgasm.backtranslate._ahocorasick' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/expand8bits.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/expand8bits.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_11AhoCorasick_setAsTerminal’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:6169:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 6169 | __pyx_t_1 = ((__pyx_v_position > __pyx_v_self->_maxpos) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_11AhoCorasick_simpleMatch’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:6718:39: warning: array subscript has type ‘char’ [-Wchar-subscripts] 6718 | __pyx_v_nextstate = (__pyx_v_table[__pyx_v_letter]); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_11AhoCorasick_addCWord’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:7765:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 7765 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_15ProtAhoCorasick_addSequence’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:10068:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 10068 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_13; __pyx_t_6+=1) { | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:10341:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 10341 | for (__pyx_t_6 = (__pyx_t_12 - 1); __pyx_t_6 > __pyx_t_13; __pyx_t_6-=1) { | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:9781:8: warning: variable ‘__pyx_v_letter’ set but not used [-Wunused-but-set-variable] 9781 | char __pyx_v_letter[2]; | ^~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_15ProtAhoCorasick_scanIndex’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:11768:50: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 11768 | __pyx_t_12 = (((__pyx_v_wc[__pyx_v_p]) > __pyx_v_wcmax) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:11883:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 11883 | __pyx_t_20 = ((__pyx_v_wcmax > __pyx_v_wordmax) != 0); | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:12109:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 12109 | __pyx_t_20 = ((__pyx_v_nbreads >= __pyx_v_covmin) != 0); | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_14NucAhoCorasick_addSequence’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:12955:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 12955 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_12; __pyx_t_6+=1) { | ^ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_14NucAhoCorasick_scanIndex’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:14387:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 14387 | __pyx_t_20 = ((__pyx_v_nbreads >= __pyx_v_covmin) != 0); | ^~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_15ProtAhoCorasick_scanIndex’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:662:40: warning: ‘__pyx_v_locmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 662 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:10802:7: note: ‘__pyx_v_locmax’ was declared here 10802 | int __pyx_v_locmax; | ^~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c: In function ‘__pyx_f_6orgasm_13backtranslate_12_ahocorasick_14NucAhoCorasick_scanIndex’: build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:662:40: warning: ‘__pyx_v_locmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 662 | #define PyInt_FromLong PyLong_FromLong | ^~~~~~~~~~~~~~~ build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.c:13321:7: note: ‘__pyx_v_locmax’ was declared here 13321 | int __pyx_v_locmax; | ^~~~~~~~~~~~~~ gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/expand8bits.o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/backtranslate/_ahocorasick.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/backtranslate/_ahocorasick.cpython-39-x86_64-linux-gnu.so orgasm.fiboheap._fiboheap :-> ['python/orgasm/fiboheap/_fiboheap.pyx', 'fiboheap/fibo.c'] cythoning python/orgasm/fiboheap/_fiboheap.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap/_fiboheap.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap building 'orgasm.fiboheap._fiboheap' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap/_fiboheap.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap/_fiboheap.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c fiboheap/fibo.c -o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/fiboheap/_fiboheap.o build/temp.linux-x86_64-3.9/fiboheap/fibo.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/fiboheap/_fiboheap.cpython-39-x86_64-linux-gnu.so orgasm.assembler._asmbgraph :-> ['python/orgasm/assembler/_asmbgraph.pyx'] cythoning python/orgasm/assembler/_asmbgraph.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_asmbgraph.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler warning: python/orgasm/assembler/_asmbgraph.pyx:161:4: Overriding cdef method with def method. building 'orgasm.assembler._asmbgraph' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_asmbgraph.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_asmbgraph.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_asmbgraph.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/assembler/_asmbgraph.cpython-39-x86_64-linux-gnu.so orgasm.assembler._tango :-> ['python/orgasm/assembler/_tango.pyx'] cythoning python/orgasm/assembler/_tango.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_tango.c building 'orgasm.assembler._tango' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_tango.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_tango.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_tango.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/assembler/_tango.cpython-39-x86_64-linux-gnu.so orgasm.assembler._assembler :-> ['python/orgasm/assembler/_assembler.pyx'] cythoning python/orgasm/assembler/_assembler.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_assembler.c /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/ORG.asm-1.0.3/python/orgasm/assembler/_assembler.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'orgasm.assembler._assembler' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -Ifiboheap -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_assembler.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_assembler.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/assembler/_assembler.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/assembler/_assembler.cpython-39-x86_64-linux-gnu.so orgasm.multialign._multi :-> ['python/orgasm/multialign/_multi.pyx'] cythoning python/orgasm/multialign/_multi.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.c creating build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign building 'orgasm.multialign._multi' extension creating build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -Isrc -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.o -msse2 -Wno-unused-function -Wmissing-braces -Wchar-subscripts build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.c: In function ‘__pyx_f_6orgasm_10multialign_6_multi_cmpHash’: build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.c:3347:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 3347 | for (__pyx_t_6 = ((-__pyx_v_delta) + __pyx_v_shift); __pyx_t_6 < __pyx_t_16; __pyx_t_6+=1) { | ^ gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_multi.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/multialign/_multi.cpython-39-x86_64-linux-gnu.so orgasm.multialign._dynamic :-> ['python/orgasm/multialign/_dynamic.pyx'] cythoning python/orgasm/multialign/_dynamic.pyx to build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_dynamic.c building 'orgasm.multialign._dynamic' extension gcc -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -D_GNU_SOURCE -fPIC -fwrapv -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -D_GNU_SOURCE -fPIC -fwrapv -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DLITTLE_END -I/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/include -I/usr/include/python3.9 -c build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_dynamic.c -o build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_dynamic.o gcc -shared -g -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-x86_64-3.9/build/temp.linux-x86_64-3.9/pyrex/orgasm/multialign/_dynamic.o -L/usr/lib64 -o build/lib.linux-x86_64-3.9/orgasm/multialign/_dynamic.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/raw_scripts Store the raw script python/oa.py -> build/raw_scripts/oa.py copying python/oa.py -> build/raw_scripts copying and adjusting python/oa.py -> build/scripts-3.9 changing mode of build/scripts-3.9/oa from 644 to 755 + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bSPlfP + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 + cd ORG.asm-1.0.3 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 ['/builddir/build/BUILD/ORG.asm-1.0.3', '/usr/lib64/python39.zip', '/usr/lib64/python3.9', '/usr/lib64/python3.9/lib-dynload', '/usr/lib64/python3.9/site-packages', '/usr/lib/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/distutils.ext', '/builddir/build/BUILD/ORG.asm-1.0.3/python'] ---------------- setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 ---------------- Installing ORG.asm (1.0.3) in serenity mode You are running the good python Restarting installation within the ORG.asm-1.0.3 virtualenv Install script restarting... ['/builddir/build/BUILD/ORG.asm-1.0.3', '/usr/lib64/python39.zip', '/usr/lib64/python3.9', '/usr/lib64/python3.9/lib-dynload', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib/python3.9/site-packages', '/builddir/build/BUILD/ORG.asm-1.0.3/distutils.ext', '/builddir/build/BUILD/ORG.asm-1.0.3/python'] ---------------- setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64 ---------------- Installing ORG.asm (1.0.3) in serenity mode You are running the good python ORG.asm will be installed with python : /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/python Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed You are running the good python Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed Required packages for the installation : Look for package pip : ok version 21.3.1 installed Look for package Cython : ok version 0.29.35 installed Look for package Sphinx : ok version 7.0.1 installed Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/buffer.c', 'src/buildindex.c', '@code16bits.c', '@codecomp.c', 'src/compsort.c', 'src/debug.c', 'src/debug.h', 'src/decode.c', 'src/encode.c', 'src/fastq.c', 'src/indexinput.c', 'src/indexoutput.c', 'src/load.c', 'src/lookfor.c', 'src/malloc.c', 'src/orgasm.h', 'src/sort.c', 'src/fgetln.c', 'fiboheap/fibo.h'] Cython module : [] Cython module : [] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h'] Cython module : ['fiboheap/fibo.h', 'src/orgasm.h', '@expand8bits.c'] Cython module : ['fiboheap/fibo.c', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/_sse.h', 'src/orgasm.h', 'fiboheap/fibo.h'] Cython module : ['src/orgasm.h'] running install running install_lib creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3 creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3 creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64 creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9 creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm copying build/lib.linux-x86_64-3.9/orgasm/version.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm copying build/lib.linux-x86_64-3.9/orgasm/config.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm copying build/lib.linux-x86_64-3.9/orgasm/tango.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/_graph.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/_graphmultiedge.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/_fibomaxintheap.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/_fibointheap.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/_fibominintheap.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph copying build/lib.linux-x86_64-3.9/orgasm/graph/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files copying build/lib.linux-x86_64-3.9/orgasm/files/universalopener.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files copying build/lib.linux-x86_64-3.9/orgasm/files/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files copying build/lib.linux-x86_64-3.9/orgasm/files/linebuffer.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files copying build/lib.linux-x86_64-3.9/orgasm/files/uncompress.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/counter.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/command.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/progress.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/logging.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/arguments.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps copying build/lib.linux-x86_64-3.9/orgasm/apps/config.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/index.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/graphstats.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/cutlow.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/restore.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/graph.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/clone.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/substract.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/unfoldrdna.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/unfold.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/list.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/seeds.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/compact.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands copying build/lib.linux-x86_64-3.9/orgasm/commands/buildgraph.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/format copying build/lib.linux-x86_64-3.9/orgasm/format/sam.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/format copying build/lib.linux-x86_64-3.9/orgasm/format/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/format creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/utils copying build/lib.linux-x86_64-3.9/orgasm/utils/dna.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/utils copying build/lib.linux-x86_64-3.9/orgasm/utils/_progress.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/utils copying build/lib.linux-x86_64-3.9/orgasm/utils/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/utils creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/samples copying build/lib.linux-x86_64-3.9/orgasm/samples/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/samples copying build/lib.linux-x86_64-3.9/orgasm/samples/phix.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/samples creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/indexer copying build/lib.linux-x86_64-3.9/orgasm/indexer/_orgasm.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/indexer copying build/lib.linux-x86_64-3.9/orgasm/indexer/fakereads.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/indexer copying build/lib.linux-x86_64-3.9/orgasm/indexer/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/indexer creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads copying build/lib.linux-x86_64-3.9/orgasm/reads/_fasta.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads copying build/lib.linux-x86_64-3.9/orgasm/reads/_sequences.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads copying build/lib.linux-x86_64-3.9/orgasm/reads/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads copying build/lib.linux-x86_64-3.9/orgasm/reads/_fastq.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads copying build/lib.linux-x86_64-3.9/orgasm/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate copying build/lib.linux-x86_64-3.9/orgasm/backtranslate/fasta.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate copying build/lib.linux-x86_64-3.9/orgasm/backtranslate/_bitvector.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate copying build/lib.linux-x86_64-3.9/orgasm/backtranslate/_ahocorasick.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate copying build/lib.linux-x86_64-3.9/orgasm/backtranslate/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/fiboheap copying build/lib.linux-x86_64-3.9/orgasm/fiboheap/_fiboheap.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/fiboheap copying build/lib.linux-x86_64-3.9/orgasm/fiboheap/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/fiboheap creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler copying build/lib.linux-x86_64-3.9/orgasm/assembler/_tango.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler copying build/lib.linux-x86_64-3.9/orgasm/assembler/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler copying build/lib.linux-x86_64-3.9/orgasm/assembler/_assembler.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler copying build/lib.linux-x86_64-3.9/orgasm/assembler/_asmbgraph.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/multialign copying build/lib.linux-x86_64-3.9/orgasm/multialign/_multi.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/multialign copying build/lib.linux-x86_64-3.9/orgasm/multialign/__init__.py -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/multialign copying build/lib.linux-x86_64-3.9/orgasm/multialign/_dynamic.cpython-39-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/multialign byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/version.py to version.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/config.py to config.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/tango.py to tango.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/graph/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/files/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/apps/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/index.py to index.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/graphstats.py to graphstats.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/cutlow.py to cutlow.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/restore.py to restore.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/graph.py to graph.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/clone.py to clone.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/substract.py to substract.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/unfoldrdna.py to unfoldrdna.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/unfold.py to unfold.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/list.py to list.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/seeds.py to seeds.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/compact.py to compact.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/commands/buildgraph.py to buildgraph.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/format/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/samples/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/samples/phix.py to phix.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/indexer/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/reads/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate/fasta.py to fasta.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/backtranslate/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/fiboheap/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/assembler/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/orgasm/multialign/__init__.py to __init__.cpython-39.pyc writing byte-compilation script '/tmp/tmp1vw9ekkx.py' /builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/python /tmp/tmp1vw9ekkx.py removing /tmp/tmp1vw9ekkx.py running install_scripts creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin copying build/scripts-3.9/oa -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin copying build/scripts-3.9/orgasmi -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin changing mode of /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/oa to 755 changing mode of /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/orgasmi to 755 creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/export creating /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/export/bin exporting file /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/oa -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/export/bin/oa exporting file /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/bin/orgasmi -> /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/export/bin/orgasmi running install_egg_info running egg_info creating python/ORG.asm.egg-info writing python/ORG.asm.egg-info/PKG-INFO writing dependency_links to python/ORG.asm.egg-info/dependency_links.txt writing top-level names to python/ORG.asm.egg-info/top_level.txt writing manifest file 'python/ORG.asm.egg-info/SOURCES.txt' Look for CPU architecture... None reading manifest file 'python/ORG.asm.egg-info/SOURCES.txt' writing manifest file 'python/ORG.asm.egg-info/SOURCES.txt' Copying python/ORG.asm.egg-info to /builddir/build/BUILDROOT/python-ORG.asm-1.0.3-1.x86_64/builddir/build/BUILD/ORG.asm-1.0.3/ORG.asm-1.0.3/lib64/python3.9/site-packages/ORG.asm-1.0.3-py3.9.egg-info running install_sphinx error: invalid command 'build_sphinx' error: Bad exit status from /var/tmp/rpm-tmp.bSPlfP (%install) Bad exit status from /var/tmp/rpm-tmp.bSPlfP (%install) RPM build errors: Finish: rpmbuild python-ORG.asm-1.0.3-1.src.rpm Finish: build phase for python-ORG.asm-1.0.3-1.src.rpm ERROR: Exception(/var/lib/copr-rpmbuild/results/python-ORG.asm-1.0.3-1.src.rpm) Config(openeuler-22.03_LTS_SP1-x86_64) 20 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot Finish: clean chroot ERROR: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-org-asm.spec Copr build error: Build failed Shared connection to 10.0.1.47 closed.