Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686506430.835543/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-bio-pyminer-0.11.0-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686506430.835543/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-bio-pyminer-0.11.0-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686506430.835543/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ov7uVD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bio_pyminer-0.11.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bio_pyminer-0.11.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd bio_pyminer-0.11.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PrOpTe + umask 022 + cd /builddir/build/BUILD + cd bio_pyminer-0.11.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/pyminer copying pyminer/make_website.py -> build/lib/pyminer copying pyminer/pyminer_get_dispersion.py -> build/lib/pyminer copying pyminer/pyminer_gprofiler_converter.py -> build/lib/pyminer copying pyminer/mat_to_adj_list.py -> build/lib/pyminer copying pyminer/pyminer_analyze_pathologic_genes.py -> build/lib/pyminer copying pyminer/pyminer_gprofile.py -> build/lib/pyminer copying pyminer/plot_gene_subset.py -> build/lib/pyminer copying pyminer/pyminer_h5_to_tab.py -> build/lib/pyminer copying pyminer/pyminer_global_test.py -> build/lib/pyminer copying pyminer/pyminer_cell_graph_plotting.py -> build/lib/pyminer copying pyminer/get_stats.py -> build/lib/pyminer copying pyminer/common_functions.py -> build/lib/pyminer copying pyminer/pyminer_gene_term_comentions.py -> build/lib/pyminer copying pyminer/pyminer_feature_selection.py -> build/lib/pyminer copying pyminer/get_degrees_of_separation_from_adjacency_list.py -> build/lib/pyminer copying pyminer/pyminer_continuous_lineage_pseudotime.py -> build/lib/pyminer copying pyminer/clustering.py -> build/lib/pyminer copying pyminer/get_high_marker_genes.py -> build/lib/pyminer copying pyminer/plot_network.py -> build/lib/pyminer copying pyminer/pyminer_tm_norm.py -> build/lib/pyminer copying pyminer/pyminer_convert_to_scanpy.py -> build/lib/pyminer copying pyminer/tab_to_h5.py -> build/lib/pyminer copying pyminer/pyminer_process_tad_bed.py -> build/lib/pyminer copying pyminer/combine_gprofiler_results.py -> build/lib/pyminer copying pyminer/pyminer_analyze_communities.py -> build/lib/pyminer copying pyminer/pyminer_objs.py -> build/lib/pyminer copying pyminer/__init__.py -> build/lib/pyminer copying pyminer/pyminer.py -> build/lib/pyminer copying pyminer/pyminer_common_stats_functions.py -> build/lib/pyminer copying pyminer/pyminer_recursive_clust.py -> build/lib/pyminer copying pyminer/pyminer_get_stats.py -> build/lib/pyminer copying pyminer/cell_signals.py -> build/lib/pyminer copying pyminer/pyminer_clust_funcs.py -> build/lib/pyminer copying pyminer/pyminer_annotate_variants_to_genes.py -> build/lib/pyminer copying pyminer/pyminer_ensembl_rest.py -> build/lib/pyminer copying pyminer/pyminer_bayes.py -> build/lib/pyminer running egg_info writing bio_pyminer.egg-info/PKG-INFO writing dependency_links to bio_pyminer.egg-info/dependency_links.txt writing requirements to bio_pyminer.egg-info/requires.txt writing top-level names to bio_pyminer.egg-info/top_level.txt reading manifest file 'bio_pyminer.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'bio_pyminer.egg-info/SOURCES.txt' copying pyminer/10090.protein.actions.v11.0.txt -> build/lib/pyminer copying pyminer/9606.protein.actions.v11.0.txt -> build/lib/pyminer copying pyminer/unified_technical_mmusculus_chromium_v3.tsv -> build/lib/pyminer copying pyminer/unified_technical_mmusculus_chromium_v3.tsv.gz -> build/lib/pyminer creating build/lib/pyminer/__pycache__ copying pyminer/__pycache__/__init__.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/get_stats.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/pyminer_annotate_variants_to_genes.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/pyminer_ensembl_rest.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/pyminer_gene_term_comentions.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/pyminer_gprofiler_converter.cpython-37.pyc -> build/lib/pyminer/__pycache__ copying pyminer/__pycache__/pyminer_process_tad_bed.cpython-37.pyc -> build/lib/pyminer/__pycache__ creating build/lib/pyminer/aux copying pyminer/aux/LPR_correlation_assessment.py -> build/lib/pyminer/aux copying pyminer/aux/LPR_dataset_reconstruction.py -> build/lib/pyminer/aux copying pyminer/aux/adj_to_ensg_adj.py -> build/lib/pyminer/aux copying pyminer/aux/collate_multiple_enrichment_lists.py -> build/lib/pyminer/aux copying pyminer/aux/combine_multiple_adj_lists.py -> build/lib/pyminer/aux copying pyminer/aux/compare_shortest_path_mats.py -> build/lib/pyminer/aux copying pyminer/aux/find_doublets.py -> build/lib/pyminer/aux copying pyminer/aux/get_max_shortest_path.py -> build/lib/pyminer/aux copying pyminer/aux/get_within_group_disperssion.py -> build/lib/pyminer/aux copying pyminer/aux/lineage_analysis.py -> build/lib/pyminer/aux copying pyminer/aux/map_table_to_ensg.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_annotate_cell_types.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_chi_res.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_class_lineage_effects.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_do_class_analyses.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_get_binary_expression_lists.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_get_lincs.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_make_cont_table.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_polygenic_complex_scores.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_process_cell_marker_dbs.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_proportionality_statistic.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_short_key_driver.py -> build/lib/pyminer/aux copying pyminer/aux/pyminer_within_group_differences.py -> build/lib/pyminer/aux copying pyminer/aux/subset_adj_list.py -> build/lib/pyminer/aux copying pyminer/aux/unify_datasets.py -> build/lib/pyminer/aux creating build/lib/pyminer/aux/__pycache__ copying pyminer/aux/__pycache__/lineage_analysis.cpython-37.pyc -> build/lib/pyminer/aux/__pycache__ copying pyminer/aux/__pycache__/pyminer_analyze_catelogue.cpython-37.pyc -> build/lib/pyminer/aux/__pycache__ creating build/lib/pyminer/legacy copying pyminer/legacy/MINE.jar -> build/lib/pyminer/legacy copying pyminer/legacy/PyMINEr_5.19.py -> build/lib/pyminer/legacy copying pyminer/legacy/PyMINEr_6.00.py -> build/lib/pyminer/legacy copying pyminer/legacy/PyMINEr_pipeline_1.02.py -> build/lib/pyminer/legacy copying pyminer/legacy/create_within_group_boot_1.01.py -> build/lib/pyminer/legacy copying pyminer/legacy/install_cell_signals.sh -> build/lib/pyminer/legacy copying pyminer/legacy/make_FPR_curve_1.4.py -> build/lib/pyminer/legacy copying pyminer/legacy/mine_R_cutoff_filter.py -> build/lib/pyminer/legacy copying pyminer/legacy/old_PyMINEr_install.sh -> build/lib/pyminer/legacy copying pyminer/legacy/old_combine_gprofiler_results.py -> build/lib/pyminer/legacy copying pyminer/legacy/remove_dups.py -> build/lib/pyminer/legacy creating build/lib/pyminer/legacy/web copying pyminer/legacy/web/app.py -> build/lib/pyminer/legacy/web copying pyminer/legacy/web/requirements.txt -> build/lib/pyminer/legacy/web creating build/lib/pyminer/legacy/web/static creating build/lib/pyminer/legacy/web/static/css copying pyminer/legacy/web/static/css/main.css -> build/lib/pyminer/legacy/web/static/css creating build/lib/pyminer/legacy/web/static/vendor creating build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7 creating build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.css -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.css.map -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.min.css -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.min.css.map -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.css -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.css.map -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.min.css -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.min.css.map -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/ie10-viewport-bug-workaround.css -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css creating build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.eot -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.svg -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.ttf -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.woff -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.woff2 -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts creating build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/bootstrap.js -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/bootstrap.min.js -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/ie10-viewport-bug-workaround.js -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/npm.js -> build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js creating build/lib/pyminer/legacy/web/static/vendor/jquery copying pyminer/legacy/web/static/vendor/jquery/jquery-3.1.0.min.js -> build/lib/pyminer/legacy/web/static/vendor/jquery creating build/lib/pyminer/legacy/web/templates copying pyminer/legacy/web/templates/about.html -> build/lib/pyminer/legacy/web/templates copying pyminer/legacy/web/templates/contact.html -> build/lib/pyminer/legacy/web/templates copying pyminer/legacy/web/templates/index.html -> build/lib/pyminer/legacy/web/templates copying pyminer/legacy/web/templates/layout.html -> build/lib/pyminer/legacy/web/templates copying pyminer/legacy/web/templates/status.html -> build/lib/pyminer/legacy/web/templates running build_scripts creating build/scripts-3.9 copying and adjusting pyminer/make_website.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_get_dispersion.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_gprofiler_converter.py -> build/scripts-3.9 copying and adjusting pyminer/mat_to_adj_list.py -> build/scripts-3.9 copying pyminer/pyminer_analyze_pathologic_genes.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_gprofile.py -> build/scripts-3.9 copying and adjusting pyminer/plot_gene_subset.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_h5_to_tab.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_global_test.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_cell_graph_plotting.py -> build/scripts-3.9 copying and adjusting pyminer/get_stats.py -> build/scripts-3.9 copying pyminer/common_functions.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_gene_term_comentions.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_feature_selection.py -> build/scripts-3.9 copying and adjusting pyminer/get_degrees_of_separation_from_adjacency_list.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_continuous_lineage_pseudotime.py -> build/scripts-3.9 copying and adjusting pyminer/clustering.py -> build/scripts-3.9 copying and adjusting pyminer/get_high_marker_genes.py -> build/scripts-3.9 copying and adjusting pyminer/plot_network.py -> build/scripts-3.9 copying pyminer/pyminer_tm_norm.py -> build/scripts-3.9 copying pyminer/pyminer_convert_to_scanpy.py -> build/scripts-3.9 copying and adjusting pyminer/tab_to_h5.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_process_tad_bed.py -> build/scripts-3.9 copying and adjusting pyminer/combine_gprofiler_results.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_analyze_communities.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_objs.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_common_stats_functions.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_recursive_clust.py -> build/scripts-3.9 copying pyminer/pyminer_get_stats.py -> build/scripts-3.9 copying and adjusting pyminer/cell_signals.py -> build/scripts-3.9 copying pyminer/pyminer_clust_funcs.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_annotate_variants_to_genes.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_ensembl_rest.py -> build/scripts-3.9 copying and adjusting pyminer/pyminer_bayes.py -> build/scripts-3.9 changing mode of build/scripts-3.9/make_website.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_get_dispersion.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_gprofiler_converter.py from 644 to 755 changing mode of build/scripts-3.9/mat_to_adj_list.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_analyze_pathologic_genes.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_gprofile.py from 644 to 755 changing mode of build/scripts-3.9/plot_gene_subset.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_h5_to_tab.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_global_test.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_cell_graph_plotting.py from 644 to 755 changing mode of build/scripts-3.9/get_stats.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_gene_term_comentions.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_feature_selection.py from 644 to 755 changing mode of build/scripts-3.9/get_degrees_of_separation_from_adjacency_list.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_continuous_lineage_pseudotime.py from 644 to 755 changing mode of build/scripts-3.9/clustering.py from 644 to 755 changing mode of build/scripts-3.9/get_high_marker_genes.py from 644 to 755 changing mode of build/scripts-3.9/plot_network.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_tm_norm.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_convert_to_scanpy.py from 644 to 755 changing mode of build/scripts-3.9/tab_to_h5.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_process_tad_bed.py from 644 to 755 changing mode of build/scripts-3.9/combine_gprofiler_results.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_analyze_communities.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_objs.py from 644 to 755 changing mode of build/scripts-3.9/pyminer.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_common_stats_functions.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_recursive_clust.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_get_stats.py from 644 to 755 changing mode of build/scripts-3.9/cell_signals.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_clust_funcs.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_annotate_variants_to_genes.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_ensembl_rest.py from 644 to 755 changing mode of build/scripts-3.9/pyminer_bayes.py from 644 to 755 + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QSgLpP + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 + cd bio_pyminer-0.11.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/make_website.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_get_dispersion.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_gprofiler_converter.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/mat_to_adj_list.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_analyze_pathologic_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_gprofile.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/9606.protein.actions.v11.0.txt -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/plot_gene_subset.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_h5_to_tab.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_global_test.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/unified_technical_mmusculus_chromium_v3.tsv.gz -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_cell_graph_plotting.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/pyminer_gprofiler_converter.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/pyminer_process_tad_bed.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/__init__.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/get_stats.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/pyminer_annotate_variants_to_genes.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/pyminer_ensembl_rest.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/__pycache__/pyminer_gene_term_comentions.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__pycache__ copying build/lib/pyminer/get_stats.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/common_functions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_do_class_analyses.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_annotate_cell_types.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_make_cont_table.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/LPR_dataset_reconstruction.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/combine_multiple_adj_lists.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/get_max_shortest_path.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/map_table_to_ensg.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_process_cell_marker_dbs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_get_binary_expression_lists.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/__pycache__ copying build/lib/pyminer/aux/__pycache__/pyminer_analyze_catelogue.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/__pycache__ copying build/lib/pyminer/aux/__pycache__/lineage_analysis.cpython-37.pyc -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/__pycache__ copying build/lib/pyminer/aux/unify_datasets.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/subset_adj_list.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/compare_shortest_path_mats.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/LPR_correlation_assessment.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_get_lincs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/adj_to_ensg_adj.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_short_key_driver.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/get_within_group_disperssion.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_proportionality_statistic.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/collate_multiple_enrichment_lists.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_class_lineage_effects.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_chi_res.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_within_group_differences.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/pyminer_polygenic_complex_scores.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/find_doublets.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/aux/lineage_analysis.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux copying build/lib/pyminer/pyminer_gene_term_comentions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_feature_selection.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/get_degrees_of_separation_from_adjacency_list.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_continuous_lineage_pseudotime.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/clustering.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/get_high_marker_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/plot_network.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_tm_norm.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_convert_to_scanpy.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/old_combine_gprofiler_results.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/remove_dups.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/PyMINEr_5.19.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/create_within_group_boot_1.01.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/mine_R_cutoff_filter.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/old_PyMINEr_install.sh -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/install_cell_signals.sh -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/make_FPR_curve_1.4.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/PyMINEr_6.00.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/PyMINEr_pipeline_1.02.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy copying build/lib/pyminer/legacy/MINE.jar -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/jquery copying build/lib/pyminer/legacy/web/static/vendor/jquery/jquery-3.1.0.min.js -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/jquery creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7 creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/npm.js -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/bootstrap.js -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/bootstrap.min.js -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js/ie10-viewport-bug-workaround.js -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/js creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.eot -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.ttf -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.svg -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.woff -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts/glyphicons-halflings-regular.woff2 -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/fonts creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.min.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.css.map -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.css.map -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.min.css.map -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap-theme.min.css.map -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/bootstrap.min.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css copying build/lib/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css/ie10-viewport-bug-workaround.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/vendor/bootstrap-3.3.7/css creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/css copying build/lib/pyminer/legacy/web/static/css/main.css -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/static/css creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/templates/status.html -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/templates/layout.html -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/templates/index.html -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/templates/contact.html -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/templates/about.html -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/templates copying build/lib/pyminer/legacy/web/requirements.txt -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web copying build/lib/pyminer/legacy/web/app.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web copying build/lib/pyminer/tab_to_h5.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/10090.protein.actions.v11.0.txt -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_process_tad_bed.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/combine_gprofiler_results.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/unified_technical_mmusculus_chromium_v3.tsv -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_analyze_communities.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_objs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/__init__.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_common_stats_functions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_recursive_clust.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_get_stats.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/cell_signals.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_clust_funcs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_annotate_variants_to_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_ensembl_rest.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer copying build/lib/pyminer/pyminer_bayes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/make_website.py to make_website.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_get_dispersion.py to pyminer_get_dispersion.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_gprofiler_converter.py to pyminer_gprofiler_converter.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/mat_to_adj_list.py to mat_to_adj_list.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_analyze_pathologic_genes.py to pyminer_analyze_pathologic_genes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_gprofile.py to pyminer_gprofile.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/plot_gene_subset.py to plot_gene_subset.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_h5_to_tab.py to pyminer_h5_to_tab.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_global_test.py to pyminer_global_test.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_cell_graph_plotting.py to pyminer_cell_graph_plotting.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/get_stats.py to get_stats.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/common_functions.py to common_functions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_do_class_analyses.py to pyminer_do_class_analyses.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_annotate_cell_types.py to pyminer_annotate_cell_types.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_make_cont_table.py to pyminer_make_cont_table.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/LPR_dataset_reconstruction.py to LPR_dataset_reconstruction.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/combine_multiple_adj_lists.py to combine_multiple_adj_lists.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/get_max_shortest_path.py to get_max_shortest_path.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/map_table_to_ensg.py to map_table_to_ensg.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_process_cell_marker_dbs.py to pyminer_process_cell_marker_dbs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_get_binary_expression_lists.py to pyminer_get_binary_expression_lists.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/unify_datasets.py to unify_datasets.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/subset_adj_list.py to subset_adj_list.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/compare_shortest_path_mats.py to compare_shortest_path_mats.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/LPR_correlation_assessment.py to LPR_correlation_assessment.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_get_lincs.py to pyminer_get_lincs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/adj_to_ensg_adj.py to adj_to_ensg_adj.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_short_key_driver.py to pyminer_short_key_driver.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/get_within_group_disperssion.py to get_within_group_disperssion.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_proportionality_statistic.py to pyminer_proportionality_statistic.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/collate_multiple_enrichment_lists.py to collate_multiple_enrichment_lists.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_class_lineage_effects.py to pyminer_class_lineage_effects.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_chi_res.py to pyminer_chi_res.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_within_group_differences.py to pyminer_within_group_differences.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/pyminer_polygenic_complex_scores.py to pyminer_polygenic_complex_scores.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/find_doublets.py to find_doublets.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/aux/lineage_analysis.py to lineage_analysis.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_gene_term_comentions.py to pyminer_gene_term_comentions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_feature_selection.py to pyminer_feature_selection.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/get_degrees_of_separation_from_adjacency_list.py to get_degrees_of_separation_from_adjacency_list.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_continuous_lineage_pseudotime.py to pyminer_continuous_lineage_pseudotime.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/clustering.py to clustering.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/get_high_marker_genes.py to get_high_marker_genes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/plot_network.py to plot_network.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_tm_norm.py to pyminer_tm_norm.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_convert_to_scanpy.py to pyminer_convert_to_scanpy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/old_combine_gprofiler_results.py to old_combine_gprofiler_results.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/remove_dups.py to remove_dups.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_5.19.py to PyMINEr_5.19.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/create_within_group_boot_1.01.py to create_within_group_boot_1.01.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/mine_R_cutoff_filter.py to mine_R_cutoff_filter.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/make_FPR_curve_1.4.py to make_FPR_curve_1.4.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_6.00.py to PyMINEr_6.00.cpython-39.pyc File "/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_6.00.py", line 3744 SyntaxError: name 'temp' is used prior to global declaration byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_pipeline_1.02.py to PyMINEr_pipeline_1.02.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/web/app.py to app.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/tab_to_h5.py to tab_to_h5.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_process_tad_bed.py to pyminer_process_tad_bed.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/combine_gprofiler_results.py to combine_gprofiler_results.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_analyze_communities.py to pyminer_analyze_communities.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_objs.py to pyminer_objs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer.py to pyminer.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_common_stats_functions.py to pyminer_common_stats_functions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_recursive_clust.py to pyminer_recursive_clust.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_get_stats.py to pyminer_get_stats.cpython-39.pyc Sorry: IndentationError: unexpected indent (pyminer_get_stats.py, line 4) byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/cell_signals.py to cell_signals.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_clust_funcs.py to pyminer_clust_funcs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_annotate_variants_to_genes.py to pyminer_annotate_variants_to_genes.cpython-39.pyc File "/usr/lib/python3.9/site-packages/pyminer/pyminer_annotate_variants_to_genes.py", line 213 if ("minus_log10_p_value" in tissue_level_dict) ^ SyntaxError: invalid syntax byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_ensembl_rest.py to pyminer_ensembl_rest.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_bayes.py to pyminer_bayes.cpython-39.pyc Sorry: IndentationError: expected an indented block (pyminer_bayes.py, line 41) writing byte-compilation script '/tmp/tmp3tdygan1.py' /usr/bin/python3 /tmp/tmp3tdygan1.py File "/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_6.00.py", line 3744 SyntaxError: name 'temp' is used prior to global declaration Sorry: IndentationError: unexpected indent (pyminer_get_stats.py, line 4) File "/usr/lib/python3.9/site-packages/pyminer/pyminer_annotate_variants_to_genes.py", line 213 if ("minus_log10_p_value" in tissue_level_dict) ^ SyntaxError: invalid syntax Sorry: IndentationError: expected an indented block (pyminer_bayes.py, line 41) removing /tmp/tmp3tdygan1.py running install_egg_info running egg_info writing bio_pyminer.egg-info/PKG-INFO writing dependency_links to bio_pyminer.egg-info/dependency_links.txt writing requirements to bio_pyminer.egg-info/requires.txt writing top-level names to bio_pyminer.egg-info/top_level.txt reading manifest file 'bio_pyminer.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'bio_pyminer.egg-info/SOURCES.txt' Copying bio_pyminer.egg-info to /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/bio_pyminer-0.11.0-py3.9.egg-info running install_scripts creating /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/make_website.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_get_dispersion.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_gprofiler_converter.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/mat_to_adj_list.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_analyze_pathologic_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_gprofile.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/plot_gene_subset.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_h5_to_tab.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_global_test.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_cell_graph_plotting.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/get_stats.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/common_functions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_gene_term_comentions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_feature_selection.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/get_degrees_of_separation_from_adjacency_list.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_continuous_lineage_pseudotime.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/clustering.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/get_high_marker_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/plot_network.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_tm_norm.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_convert_to_scanpy.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/tab_to_h5.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_process_tad_bed.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/combine_gprofiler_results.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_analyze_communities.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_objs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_common_stats_functions.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_recursive_clust.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_get_stats.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/cell_signals.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_clust_funcs.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_annotate_variants_to_genes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_ensembl_rest.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin copying build/scripts-3.9/pyminer_bayes.py -> /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/make_website.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_get_dispersion.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_gprofiler_converter.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/mat_to_adj_list.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_analyze_pathologic_genes.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_gprofile.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/plot_gene_subset.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_h5_to_tab.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_global_test.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_cell_graph_plotting.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/get_stats.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/common_functions.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_gene_term_comentions.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_feature_selection.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/get_degrees_of_separation_from_adjacency_list.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_continuous_lineage_pseudotime.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/clustering.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/get_high_marker_genes.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/plot_network.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_tm_norm.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_convert_to_scanpy.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/tab_to_h5.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_process_tad_bed.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/combine_gprofiler_results.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_analyze_communities.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_objs.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_common_stats_functions.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_recursive_clust.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_get_stats.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/cell_signals.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_clust_funcs.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_annotate_variants_to_genes.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_ensembl_rest.py to 755 changing mode of /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/bin/pyminer_bayes.py to 755 + install -d -m755 /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64//usr/share/doc/python-bio-pyminer + '[' -d doc ']' ~/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 ~/build/BUILD/bio_pyminer-0.11.0 + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + pushd /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' + popd ~/build/BUILD/bio_pyminer-0.11.0 + mv /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/filelist.lst . + mv /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 0.11.0-1 --unique-debug-suffix -0.11.0-1.x86_64 --unique-debug-src-base python-bio-pyminer-0.11.0-1.x86_64 -S debugsourcefiles.list /builddir/build/BUILD/bio_pyminer-0.11.0 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 *** Error compiling '/builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_6.00.py'... File "/usr/lib/python3.9/site-packages/pyminer/legacy/PyMINEr_6.00.py", line 3744 SyntaxError: name 'temp' is used prior to global declaration *** Error compiling '/builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_annotate_variants_to_genes.py'... File "/usr/lib/python3.9/site-packages/pyminer/pyminer_annotate_variants_to_genes.py", line 213 if ("minus_log10_p_value" in tissue_level_dict) ^ SyntaxError: invalid syntax *** Error compiling '/builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_bayes.py'... Sorry: IndentationError: expected an indented block (pyminer_bayes.py, line 41) *** Error compiling '/builddir/build/BUILDROOT/python-bio-pyminer-0.11.0-1.x86_64/usr/lib/python3.9/site-packages/pyminer/pyminer_get_stats.py'... Sorry: IndentationError: unexpected indent (pyminer_get_stats.py, line 4) error: Bad exit status from /var/tmp/rpm-tmp.QSgLpP (%install) Bad exit status from /var/tmp/rpm-tmp.QSgLpP (%install) RPM build errors: Child return code was: 1 EXCEPTION: [Error('Command failed: \n # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.9/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.9/site-packages/mockbuild/util.py", line 598, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-bio-pyminer.spec