%global _empty_manifest_terminate_build 0
Name:		python-limix
Version:	3.0.4
Release:	1
Summary:	Genetic analysis toolbox using mixed models
License:	MIT
URL:		https://github.com/limix/limix
Source0:	https://mirrors.aliyun.com/pypi/web/packages/d6/68/f878f7879c772016ebea618255a781408d057aec0f06673f7a8e5909344c/limix-3.0.4.tar.gz
BuildArch:	noarch


%description
# limix

[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)

Genomic analyses require flexible models that can be adapted to the needs of the user.

Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for

- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.

We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).

## Install

> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.

Installation is easy and works on macOS, Linux, and Windows:

```bash
pip install limix
```

If you already have Limix but want to upgrade it to the latest version:

```bash
pip install limix --upgrade
```

## Interactive tutorials

- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)

## Running tests

After installation, you can test it

```bash
python -c "import limix; limix.test()"
```

as long as you have [pytest](https://docs.pytest.org/en/latest/).

## Authors

* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)

## License

This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).

%package -n python3-limix
Summary:	Genetic analysis toolbox using mixed models
Provides:	python-limix
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-limix
# limix

[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)

Genomic analyses require flexible models that can be adapted to the needs of the user.

Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for

- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.

We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).

## Install

> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.

Installation is easy and works on macOS, Linux, and Windows:

```bash
pip install limix
```

If you already have Limix but want to upgrade it to the latest version:

```bash
pip install limix --upgrade
```

## Interactive tutorials

- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)

## Running tests

After installation, you can test it

```bash
python -c "import limix; limix.test()"
```

as long as you have [pytest](https://docs.pytest.org/en/latest/).

## Authors

* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)

## License

This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).

%package help
Summary:	Development documents and examples for limix
Provides:	python3-limix-doc
%description help
# limix

[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)

Genomic analyses require flexible models that can be adapted to the needs of the user.

Limix is a flexible and efficient linear mixed model library with interfaces to Python.
It includes methods for

- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.

We have an extensive [documentation](https://limix.readthedocs.io) of the library.
If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).

## Install

> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.

Installation is easy and works on macOS, Linux, and Windows:

```bash
pip install limix
```

If you already have Limix but want to upgrade it to the latest version:

```bash
pip install limix --upgrade
```

## Interactive tutorials

- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)

## Running tests

After installation, you can test it

```bash
python -c "import limix; limix.test()"
```

as long as you have [pytest](https://docs.pytest.org/en/latest/).

## Authors

* [Christoph Lippert](https://github.com/clippert)
* [Danilo Horta](https://github.com/horta)
* [Francesco Paolo Casale](https://github.com/fpcasale)
* [Oliver Stegle](https://github.com/ostegle)

## License

This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).

%prep
%autosetup -n limix-3.0.4

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-limix -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 3.0.4-1
- Package Spec generated