%global _empty_manifest_terminate_build 0 Name: python-CIRIquant Version: 1.1.2 Release: 1 Summary: circular RNA quantification pipeline License: MIT URL: https://github.com/bioinfo-biols/CIRIquant Source0: https://mirrors.aliyun.com/pypi/web/packages/a3/6e/b5cade7b9790f036fc281aa12f8536d483a3c60f2db30d8b2131be7dae86/CIRIquant-1.1.2.tar.gz BuildArch: noarch Requires: python3-argparse Requires: python3-PyYAML Requires: python3-pysam Requires: python3-numpy Requires: python3-scipy Requires: python3-scikit-learn Requires: python3-numexpr %description ## CIRIquant ## [![Build Status](https://staging.travis-ci.com/bioinfo-biols/CIRIquant.svg?branch=master)](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) ![GitHub release (latest by date)](https://img.shields.io/github/v/release/bioinfo-biols/CIRIquant) [![The MIT License](https://img.shields.io/badge/license-MIT-orange.svg)](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) ![GitHub All Releases](https://img.shields.io/github/downloads/bioinfo-biols/CIRIquant/total) ![SourceForge](https://img.shields.io/sourceforge/dm/ciri/CIRIquant) ![Readthedoc](https://readthedocs.org/projects/ciriquant-cookbook/badge/?version=latest) CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data ### Documentation ### Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) ### Author ### Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) Maintainer: Jinyang Zhang ### Release Notes ### - Version 1.1: Added support for stranded library and GFF3 format input. - Version 1.0: The first released version of CIRIquant. ### License ### The code is released under the MIT License. See the `LICENSE` file for more detail. ### Citing CIRIquant - Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) %package -n python3-CIRIquant Summary: circular RNA quantification pipeline Provides: python-CIRIquant BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-CIRIquant ## CIRIquant ## [![Build Status](https://staging.travis-ci.com/bioinfo-biols/CIRIquant.svg?branch=master)](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) ![GitHub release (latest by date)](https://img.shields.io/github/v/release/bioinfo-biols/CIRIquant) [![The MIT License](https://img.shields.io/badge/license-MIT-orange.svg)](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) ![GitHub All Releases](https://img.shields.io/github/downloads/bioinfo-biols/CIRIquant/total) ![SourceForge](https://img.shields.io/sourceforge/dm/ciri/CIRIquant) ![Readthedoc](https://readthedocs.org/projects/ciriquant-cookbook/badge/?version=latest) CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data ### Documentation ### Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) ### Author ### Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) Maintainer: Jinyang Zhang ### Release Notes ### - Version 1.1: Added support for stranded library and GFF3 format input. - Version 1.0: The first released version of CIRIquant. ### License ### The code is released under the MIT License. See the `LICENSE` file for more detail. ### Citing CIRIquant - Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) %package help Summary: Development documents and examples for CIRIquant Provides: python3-CIRIquant-doc %description help ## CIRIquant ## [![Build Status](https://staging.travis-ci.com/bioinfo-biols/CIRIquant.svg?branch=master)](https://staging.travis-ci.com/bioinfo-biols/CIRIquant) ![GitHub release (latest by date)](https://img.shields.io/github/v/release/bioinfo-biols/CIRIquant) [![The MIT License](https://img.shields.io/badge/license-MIT-orange.svg)](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE) ![GitHub All Releases](https://img.shields.io/github/downloads/bioinfo-biols/CIRIquant/total) ![SourceForge](https://img.shields.io/sourceforge/dm/ciri/CIRIquant) ![Readthedoc](https://readthedocs.org/projects/ciriquant-cookbook/badge/?version=latest) CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data ### Documentation ### Documentation is available online at [https://ciriquant-cookbook.readthedocs.io/en/latest/index.html](https://ciriquant-cookbook.readthedocs.io/en/latest/index.html) ### Author ### Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn) Maintainer: Jinyang Zhang ### Release Notes ### - Version 1.1: Added support for stranded library and GFF3 format input. - Version 1.0: The first released version of CIRIquant. ### License ### The code is released under the MIT License. See the `LICENSE` file for more detail. ### Citing CIRIquant - Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9) %prep %autosetup -n CIRIquant-1.1.2 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-CIRIquant -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue Jun 20 2023 Python_Bot - 1.1.2-1 - Package Spec generated