Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687312774.804448/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-gtdbtk-2.3.0-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687312774.804448/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-gtdbtk-2.3.0-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687312774.804448/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.bqHJfe + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gtdbtk-2.3.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/gtdbtk-2.3.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gtdbtk-2.3.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.o6JNLV + umask 022 + cd /builddir/build/BUILD + cd gtdbtk-2.3.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/gtdbtk copying gtdbtk/trim_msa.py -> build/lib/gtdbtk copying gtdbtk/misc.py -> build/lib/gtdbtk copying gtdbtk/classify.py -> build/lib/gtdbtk copying gtdbtk/__init__.py -> build/lib/gtdbtk copying gtdbtk/markers.py -> build/lib/gtdbtk copying gtdbtk/ani_screen.py -> build/lib/gtdbtk copying gtdbtk/relative_distance.py -> build/lib/gtdbtk copying gtdbtk/__main__.py -> build/lib/gtdbtk copying gtdbtk/decorate.py -> build/lib/gtdbtk copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk copying gtdbtk/tools.py -> build/lib/gtdbtk copying gtdbtk/ani_rep.py -> build/lib/gtdbtk copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk copying gtdbtk/exceptions.py -> build/lib/gtdbtk copying gtdbtk/main.py -> build/lib/gtdbtk copying gtdbtk/cli.py -> build/lib/gtdbtk copying gtdbtk/split.py -> build/lib/gtdbtk creating build/lib/tests copying tests/__init__.py -> build/lib/tests copying tests/test_classify.py -> build/lib/tests copying tests/test_cli.py -> build/lib/tests copying tests/common.py -> build/lib/tests creating build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite creating build/lib/gtdbtk/pipeline copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline creating build/lib/gtdbtk/external copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external creating build/lib/gtdbtk/files copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files creating build/lib/gtdbtk/model copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model creating build/lib/gtdbtk/config copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config copying gtdbtk/config/output.py -> build/lib/gtdbtk/config copying gtdbtk/config/common.py -> build/lib/gtdbtk/config creating build/lib/gtdbtk/external/pypfam copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam creating build/lib/gtdbtk/external/pypfam/Scan copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan creating build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM creating build/lib/gtdbtk/files/prodigal copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal creating build/lib/gtdbtk/files/marker copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker creating build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk creating build/lib/tests/test_gtdbtk/test_external copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external creating build/lib/tests/test_gtdbtk/test_biolib_lite copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite creating build/lib/tests/test_gtdbtk/test_files copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files creating build/lib/tests/test_gtdbtk/test_files/test_prodigal copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal creating build/lib/tests/test_gtdbtk/test_files/test_marker copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker creating build/lib/gtdbtk/tests creating build/lib/gtdbtk/tests/data creating build/lib/gtdbtk/tests/data/genomes copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BH4mBT + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 + cd gtdbtk-2.3.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/execute.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/seq_io.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/logger.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/newick.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/exceptions.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/parallel.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite copying build/lib/gtdbtk/biolib_lite/common.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline copying build/lib/gtdbtk/pipeline/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline copying build/lib/gtdbtk/pipeline/align.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline copying build/lib/gtdbtk/pipeline/export_msa.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline copying build/lib/gtdbtk/trim_msa.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/misc.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/classify.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/markers.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/prodigal.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/pplacer.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/tigrfam_search.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/hmm_aligner.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/mash.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/fastani.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/external/pfam_search.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam copying build/lib/gtdbtk/external/pypfam/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/Scan copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/Scan copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/Scan creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM copying build/lib/gtdbtk/external/fasttree.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external copying build/lib/gtdbtk/ani_screen.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/relative_distance.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/__main__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/batchfile.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/red_dict.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal copying build/lib/gtdbtk/files/prodigal/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal copying build/lib/gtdbtk/files/prodigal/tln_table.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal copying build/lib/gtdbtk/files/pplacer_classification.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/marker_info.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/missing_genomes.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/gtdb_radii.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/stage_logger.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker copying build/lib/gtdbtk/files/marker/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker copying build/lib/gtdbtk/files/marker/copy_number.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker copying build/lib/gtdbtk/files/marker/tophit.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker copying build/lib/gtdbtk/files/tree_mapping.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/files/classify_summary.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files copying build/lib/gtdbtk/decorate.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/model copying build/lib/gtdbtk/model/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/model copying build/lib/gtdbtk/model/enum.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/model copying build/lib/gtdbtk/infer_ranks.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/tools.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests/data creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests/data/genomes copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests/data/genomes copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests/data/genomes copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tests/data/genomes copying build/lib/gtdbtk/ani_rep.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config copying build/lib/gtdbtk/config/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config copying build/lib/gtdbtk/config/output.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config copying build/lib/gtdbtk/config/common.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config copying build/lib/gtdbtk/reroot_tree.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/exceptions.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/main.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/cli.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk copying build/lib/gtdbtk/split.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests copying build/lib/tests/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk copying build/lib/tests/test_gtdbtk/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk copying build/lib/tests/test_gtdbtk/test_tools.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk copying build/lib/tests/test_gtdbtk/test__main__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite copying build/lib/tests/test_gtdbtk/test_markers.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk copying build/lib/tests/test_gtdbtk/test_main.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_prodigal copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_prodigal copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_prodigal copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files creating /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker copying build/lib/tests/test_classify.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests copying build/lib/tests/test_cli.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests copying build/lib/tests/common.py -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/execute.py to execute.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/custom_help_formatter.py to custom_help_formatter.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/seq_io.py to seq_io.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/taxonomy.py to taxonomy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/prodigal_biolib.py to prodigal_biolib.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/logger.py to logger.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/newick.py to newick.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/exceptions.py to exceptions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/parallel.py to parallel.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/biolib_lite/common.py to common.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline/align.py to align.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/pipeline/export_msa.py to export_msa.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/trim_msa.py to trim_msa.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/misc.py to misc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/classify.py to classify.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/markers.py to markers.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/prodigal.py to prodigal.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pplacer.py to pplacer.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/tigrfam_search.py to tigrfam_search.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/hmm_aligner.py to hmm_aligner.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/mash.py to mash.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/fastani.py to fastani.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pfam_search.py to pfam_search.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/Scan/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/Scan/PfamScan.py to PfamScan.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/HMMMatch.py to HMMMatch.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/HMMSequence.py to HMMSequence.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/HMMUnit.py to HMMUnit.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/HMMResults.py to HMMResults.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/pypfam/HMM/HMMResultsIO.py to HMMResultsIO.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/external/fasttree.py to fasttree.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/ani_screen.py to ani_screen.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/relative_distance.py to relative_distance.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/__main__.py to __main__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/batchfile.py to batchfile.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/red_dict.py to red_dict.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal/tln_table_summary.py to tln_table_summary.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/prodigal/tln_table.py to tln_table.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/pplacer_classification.py to pplacer_classification.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker_info.py to marker_info.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/missing_genomes.py to missing_genomes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/gtdb_radii.py to gtdb_radii.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/stage_logger.py to stage_logger.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker/copy_number.py to copy_number.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/marker/tophit.py to tophit.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/tree_mapping.py to tree_mapping.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/files/classify_summary.py to classify_summary.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/decorate.py to decorate.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/model/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/model/enum.py to enum.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/infer_ranks.py to infer_ranks.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/tools.py to tools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/ani_rep.py to ani_rep.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config/output.py to output.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/config/common.py to common.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/reroot_tree.py to reroot_tree.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/exceptions.py to exceptions.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/main.py to main.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/cli.py to cli.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk/split.py to split.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external/test_fastani.py to test_fastani.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_external/test_fasttree.py to test_fasttree.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_trim_msa.py to test_trim_msa.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_tools.py to test_tools.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test__main__.py to test__main__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py to test_seq_io.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py to test_taxonomy.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite/test_common.py to test_common.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_biolib_lite/test_newick.py to test_newick.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_markers.py to test_markers.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_main.py to test_main.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_prodigal/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py to test_tln_table_summary.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker/test_tophit.py to test_tophit.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py to test_copy_number.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_gtdbtk/test_files/test_marker/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_classify.py to test_classify.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/test_cli.py to test_cli.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/tests/common.py to common.cpython-39.pyc writing byte-compilation script '/tmp/tmp3r4be9ev.py' /usr/bin/python3 /tmp/tmp3r4be9ev.py removing /tmp/tmp3r4be9ev.py running install_data copying LICENSE -> /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/ running install_egg_info running egg_info writing gtdbtk.egg-info/PKG-INFO writing dependency_links to gtdbtk.egg-info/dependency_links.txt writing entry points to gtdbtk.egg-info/entry_points.txt writing requirements to gtdbtk.egg-info/requires.txt writing top-level names to gtdbtk.egg-info/top_level.txt reading manifest file 'gtdbtk.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'gtdbtk.egg-info/SOURCES.txt' Copying gtdbtk.egg-info to /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9/site-packages/gtdbtk-2.3.0-py3.9.egg-info running install_scripts Installing gtdbtk script to /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/bin + install -d -m755 /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64//usr/share/doc/python-gtdbtk + '[' -d doc ']' ~/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 ~/build/BUILD/gtdbtk-2.3.0 + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + pushd /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' + popd ~/build/BUILD/gtdbtk-2.3.0 + mv /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/filelist.lst . + mv /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 2.3.0-1 --unique-debug-suffix -2.3.0-1.x86_64 --unique-debug-src-base python-gtdbtk-2.3.0-1.x86_64 -S debugsourcefiles.list /builddir/build/BUILD/gtdbtk-2.3.0 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink Processing files: python3-gtdbtk-2.3.0-1.noarch Provides: python-gtdbtk python3-gtdbtk = 2.3.0-1 python3.9dist(gtdbtk) = 2.3 python3dist(gtdbtk) = 2.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 python3.9dist(dendropy) >= 4.1 python3.9dist(numpy) >= 1.9 python3.9dist(pydantic) python3.9dist(setuptools) python3.9dist(tqdm) >= 4.35 Processing files: python-gtdbtk-help-2.3.0-1.noarch warning: Empty %files file /builddir/build/BUILD/gtdbtk-2.3.0/doclist.lst Provides: python-gtdbtk-help = 2.3.0-1 python3-gtdbtk-doc Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-gtdbtk-2.3.0-1.x86_64 RPM build errors: error: Installed (but unpackaged) file(s) found: /usr/LICENSE Empty %files file /builddir/build/BUILD/gtdbtk-2.3.0/doclist.lst Installed (but unpackaged) file(s) found: /usr/LICENSE Child return code was: 1 EXCEPTION: [Error('Command failed: \n # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.9/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.9/site-packages/mockbuild/util.py", line 598, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-gtdbtk.spec