%global _empty_manifest_terminate_build 0
Name:		python-bioformats-jar
Version:	2020.5.27
Release:	1
Summary:	bioformats_package.jar installer for scyjava
License:	GPL-2.0
URL:		https://github.com/tlambert03/bioformats_jar
Source0:	https://mirrors.aliyun.com/pypi/web/packages/b5/10/0f7b9521bc51d768130bd405122dcde00f6fe9b51de514fccf32f2e531d2/bioformats_jar-2020.5.27.tar.gz
BuildArch:	noarch

Requires:	python3-scyjava
Requires:	python3-pytest
Requires:	python3-pytest-cov

%description
# bioformats_jar

[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)

## deprecated

This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
package can be accomplished using scyjava as follows:

```python
import jpype
import scyjava

scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
scyjava.start_jvm()
loci = jpype.JPackage("loci")
loci.common.DebugTools.setRootLevel("ERROR")
```

This package remains only for packages that already depend on it.

## usage

```python
from bioformats_jar import get_loci, set_loci_log_level

# start the JVM and get the loci module
loci = get_loci()

# optionally:
set_loci_log_level("DEBUG")  # by default "ERROR"
```

The following environment variables can also be used:

- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
  `"gpl"` or `"bsd"`.  By default `"gpl"`

*see also:*

- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API

## install

```sh
pip install bioformats-jar
```

```sh
conda install -c conda-forge bioformats-jar
```


%package -n python3-bioformats-jar
Summary:	bioformats_package.jar installer for scyjava
Provides:	python-bioformats-jar
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-bioformats-jar
# bioformats_jar

[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)

## deprecated

This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
package can be accomplished using scyjava as follows:

```python
import jpype
import scyjava

scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
scyjava.start_jvm()
loci = jpype.JPackage("loci")
loci.common.DebugTools.setRootLevel("ERROR")
```

This package remains only for packages that already depend on it.

## usage

```python
from bioformats_jar import get_loci, set_loci_log_level

# start the JVM and get the loci module
loci = get_loci()

# optionally:
set_loci_log_level("DEBUG")  # by default "ERROR"
```

The following environment variables can also be used:

- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
  `"gpl"` or `"bsd"`.  By default `"gpl"`

*see also:*

- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API

## install

```sh
pip install bioformats-jar
```

```sh
conda install -c conda-forge bioformats-jar
```


%package help
Summary:	Development documents and examples for bioformats-jar
Provides:	python3-bioformats-jar-doc
%description help
# bioformats_jar

[![License](https://img.shields.io/pypi/l/bioformats_jar.svg?color=green)](https://github.com/tlambert03/bioformats_jar/raw/master/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/bioformats_jar.svg?color=green)](https://pypi.org/project/bioformats_jar)
[![Python Version](https://img.shields.io/pypi/pyversions/bioformats_jar.svg?color=green)](https://python.org)
[![CI](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml/badge.svg)](https://github.com/tlambert03/bioformats_jar/actions/workflows/ci.yml)

## deprecated

This package is deprecated.  You should use [scyjava](https://github.com/scijava/scyjava) to download and import jars.  The functionality in this
package can be accomplished using scyjava as follows:

```python
import jpype
import scyjava

scyjava.config.endpoints.append('ome:formats-gpl:6.7.0')
scyjava.start_jvm()
loci = jpype.JPackage("loci")
loci.common.DebugTools.setRootLevel("ERROR")
```

This package remains only for packages that already depend on it.

## usage

```python
from bioformats_jar import get_loci, set_loci_log_level

# start the JVM and get the loci module
loci = get_loci()

# optionally:
set_loci_log_level("DEBUG")  # by default "ERROR"
```

The following environment variables can also be used:

- `BIOFORMATS_VERSION` - version of bioformats to use.  by default "LATEST"
- `BIOFORMATS_LOG_LEVEL` - logging level for loci tools. by default "ERROR"
- `BIOFORMATS_LICENSE` - license version of bioformats to use.  must be either
  `"gpl"` or `"bsd"`.  By default `"gpl"`

*see also:*

- [Bioformats Docs](https://docs.openmicroscopy.org/bio-formats/latest)
- [Javadocs](https://downloads.openmicroscopy.org/bio-formats/latest/api/) with the loci API

## install

```sh
pip install bioformats-jar
```

```sh
conda install -c conda-forge bioformats-jar
```


%prep
%autosetup -n bioformats_jar-2020.5.27

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-bioformats-jar -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Tue Jun 20 2023 Python_Bot <Python_Bot@openeuler.org> - 2020.5.27-1
- Package Spec generated