%global _empty_manifest_terminate_build 0 Name: python-probeinterface Version: 0.2.16 Release: 1 Summary: Python package to handle probe layout, geometry and wiring to device. License: MIT License URL: https://pypi.org/project/probeinterface/ Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dd/3d/27dbfa13b8fa5fcbc6ed183f8ae7ff88a2c49f5f1da6214b9b5781558790/probeinterface-0.2.16.tar.gz BuildArch: noarch Requires: python3-numpy Requires: python3-pillow Requires: python3-sphinx-gallery Requires: python3-matplotlib Requires: python3-scipy Requires: python3-pandas Requires: python3-pytest Requires: python3-matplotlib Requires: python3-scipy Requires: python3-pandas %description # probeinterface A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Documentation : https://probeinterface.readthedocs.io/ ## Goals Make a lightweight package to handle: * probe contact geometry (both 2D and 3D layouts) * probe shape (contour of the probe, shape of channel contact, ...) * probe wiring to device (the physical layout often doesn't match the channel ordering) * combining several probes into a device with global geometry + global wiring * exporting probe geometry data into JSON files * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library) Bonus : * optional plotting (based on `matplotlib`) * load/save geometry using common formats (PRB, CSV, NWB, ...) * handle SI length units correctly um/mm/... Target users/projet : * spikeinterface team : integrate this into spikeextractor for channel location * neo team : handle array_annotations for AnalogSignal * spikeforest team : use this package for ploting probe activity * phy team: integrate for probe display * spyking-circus team : handle probe with this package * kilosort team : handle probe with this package * tridesclous team : handle probe with this package * open ephys team : automatically generate channel map configuration files Author: Samuel Garcia %package -n python3-probeinterface Summary: Python package to handle probe layout, geometry and wiring to device. Provides: python-probeinterface BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-probeinterface # probeinterface A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Documentation : https://probeinterface.readthedocs.io/ ## Goals Make a lightweight package to handle: * probe contact geometry (both 2D and 3D layouts) * probe shape (contour of the probe, shape of channel contact, ...) * probe wiring to device (the physical layout often doesn't match the channel ordering) * combining several probes into a device with global geometry + global wiring * exporting probe geometry data into JSON files * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library) Bonus : * optional plotting (based on `matplotlib`) * load/save geometry using common formats (PRB, CSV, NWB, ...) * handle SI length units correctly um/mm/... Target users/projet : * spikeinterface team : integrate this into spikeextractor for channel location * neo team : handle array_annotations for AnalogSignal * spikeforest team : use this package for ploting probe activity * phy team: integrate for probe display * spyking-circus team : handle probe with this package * kilosort team : handle probe with this package * tridesclous team : handle probe with this package * open ephys team : automatically generate channel map configuration files Author: Samuel Garcia %package help Summary: Development documents and examples for probeinterface Provides: python3-probeinterface-doc %description help # probeinterface A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Documentation : https://probeinterface.readthedocs.io/ ## Goals Make a lightweight package to handle: * probe contact geometry (both 2D and 3D layouts) * probe shape (contour of the probe, shape of channel contact, ...) * probe wiring to device (the physical layout often doesn't match the channel ordering) * combining several probes into a device with global geometry + global wiring * exporting probe geometry data into JSON files * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library) Bonus : * optional plotting (based on `matplotlib`) * load/save geometry using common formats (PRB, CSV, NWB, ...) * handle SI length units correctly um/mm/... Target users/projet : * spikeinterface team : integrate this into spikeextractor for channel location * neo team : handle array_annotations for AnalogSignal * spikeforest team : use this package for ploting probe activity * phy team: integrate for probe display * spyking-circus team : handle probe with this package * kilosort team : handle probe with this package * tridesclous team : handle probe with this package * open ephys team : automatically generate channel map configuration files Author: Samuel Garcia %prep %autosetup -n probeinterface-0.2.16 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-probeinterface -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Mon Apr 10 2023 Python_Bot - 0.2.16-1 - Package Spec generated