%global _empty_manifest_terminate_build 0 Name: python-PyLEMS Version: 0.6.0 Release: 1 Summary: A Python library for working with the Low Entropy Model Specification language (LEMS) License: LGPL URL: https://github.com/LEMS/pylems Source0: https://mirrors.nju.edu.cn/pypi/web/packages/0d/2d/111124bcfe3372b0f7f1eeac6a62dd12d94b869aeaf75c6ffda5c2bbacea/PyLEMS-0.6.0.tar.gz BuildArch: noarch Requires: python3-lxml Requires: python3-typing %description ## PyLEMS [![Build](https://github.com/LEMS/pylems/actions/workflows/ci.yml/badge.svg)](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [![Documentation Status](https://readthedocs.org/projects/pylems/badge/?version=latest)](https://pylems.readthedocs.io/en/latest/?badge=latest) A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models. For more about PyLEMS see: Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson, **libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience** [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038 _**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_ For more details on LEMS see: Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver, **LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**, [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079 ### Installation A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html): pip install pylems To install as root: sudo pip install pylems Alternatively, you can obtain the latest version with git clone https://github.com/LEMS/pylems.git cd pylems git checkout development # optional sudo python setup.py install ### Usage as a LEMS model simulator pylems [options] LEMS_file **Options** - -I/-include path - Adds a directory to the model file include search path ### Examples **NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)** - Example 0 -- Working - Example 1 -- Working - Example 2 -- Working - Example 3 -- Working - Example 4 -- Not working (Unsupported in PyLEMS: KSChannel) - Example 5 -- Working - Example 6 -- Working - Example 7 -- Working - Example 8 -- Working - Example 9 -- Working - Example 10 -- Working - Example 11 -- Working - Example 12 -- Not working (Unsupported in PyLEMS: Property) - Example 13 -- Working - Example 14 -- Not working (Unsupported in PyLEMS: Property) - Example 15 -- Working - Example 16 -- Working (apart from spikeArray) - Example 17 -- Working - Example 18 -- Working **LEMS examples (in directory examples)** - example1.xml -- Working - example2.xml -- Working - example3.xml -- Working - example4.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example5.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example6.xml -- Working -- TODO: Rest of examples require an update to the `` element, i.e. use `` not ``, to work in PyLEMS **LEMS elements that do not work** - KSChannel - Property - XPath based parameters - PathParameter - Assertions **Tasks TODO** - Implement flattening - Decouple events from runnables - Improve dimension-checking on expressions. ### Travis integration pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/). [![Build Status](https://travis-ci.com/LEMS/pylems.png?branch=master)](https://travis-ci.com/LEMS/pylems) This code is distributed under the terms of the GNU Lesser General Public License. %package -n python3-PyLEMS Summary: A Python library for working with the Low Entropy Model Specification language (LEMS) Provides: python-PyLEMS BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-PyLEMS ## PyLEMS [![Build](https://github.com/LEMS/pylems/actions/workflows/ci.yml/badge.svg)](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [![Documentation Status](https://readthedocs.org/projects/pylems/badge/?version=latest)](https://pylems.readthedocs.io/en/latest/?badge=latest) A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models. For more about PyLEMS see: Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson, **libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience** [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038 _**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_ For more details on LEMS see: Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver, **LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**, [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079 ### Installation A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html): pip install pylems To install as root: sudo pip install pylems Alternatively, you can obtain the latest version with git clone https://github.com/LEMS/pylems.git cd pylems git checkout development # optional sudo python setup.py install ### Usage as a LEMS model simulator pylems [options] LEMS_file **Options** - -I/-include path - Adds a directory to the model file include search path ### Examples **NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)** - Example 0 -- Working - Example 1 -- Working - Example 2 -- Working - Example 3 -- Working - Example 4 -- Not working (Unsupported in PyLEMS: KSChannel) - Example 5 -- Working - Example 6 -- Working - Example 7 -- Working - Example 8 -- Working - Example 9 -- Working - Example 10 -- Working - Example 11 -- Working - Example 12 -- Not working (Unsupported in PyLEMS: Property) - Example 13 -- Working - Example 14 -- Not working (Unsupported in PyLEMS: Property) - Example 15 -- Working - Example 16 -- Working (apart from spikeArray) - Example 17 -- Working - Example 18 -- Working **LEMS examples (in directory examples)** - example1.xml -- Working - example2.xml -- Working - example3.xml -- Working - example4.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example5.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example6.xml -- Working -- TODO: Rest of examples require an update to the `` element, i.e. use `` not ``, to work in PyLEMS **LEMS elements that do not work** - KSChannel - Property - XPath based parameters - PathParameter - Assertions **Tasks TODO** - Implement flattening - Decouple events from runnables - Improve dimension-checking on expressions. ### Travis integration pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/). [![Build Status](https://travis-ci.com/LEMS/pylems.png?branch=master)](https://travis-ci.com/LEMS/pylems) This code is distributed under the terms of the GNU Lesser General Public License. %package help Summary: Development documents and examples for PyLEMS Provides: python3-PyLEMS-doc %description help ## PyLEMS [![Build](https://github.com/LEMS/pylems/actions/workflows/ci.yml/badge.svg)](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [![Documentation Status](https://readthedocs.org/projects/pylems/badge/?version=latest)](https://pylems.readthedocs.io/en/latest/?badge=latest) A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models. For more about PyLEMS see: Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson, **libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience** [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038 _**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_ For more details on LEMS see: Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver, **LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**, [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079 ### Installation A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html): pip install pylems To install as root: sudo pip install pylems Alternatively, you can obtain the latest version with git clone https://github.com/LEMS/pylems.git cd pylems git checkout development # optional sudo python setup.py install ### Usage as a LEMS model simulator pylems [options] LEMS_file **Options** - -I/-include path - Adds a directory to the model file include search path ### Examples **NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)** - Example 0 -- Working - Example 1 -- Working - Example 2 -- Working - Example 3 -- Working - Example 4 -- Not working (Unsupported in PyLEMS: KSChannel) - Example 5 -- Working - Example 6 -- Working - Example 7 -- Working - Example 8 -- Working - Example 9 -- Working - Example 10 -- Working - Example 11 -- Working - Example 12 -- Not working (Unsupported in PyLEMS: Property) - Example 13 -- Working - Example 14 -- Not working (Unsupported in PyLEMS: Property) - Example 15 -- Working - Example 16 -- Working (apart from spikeArray) - Example 17 -- Working - Example 18 -- Working **LEMS examples (in directory examples)** - example1.xml -- Working - example2.xml -- Working - example3.xml -- Working - example4.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example5.xml -- Not working (Unsupported in PyLEMS: KSChannel) - example6.xml -- Working -- TODO: Rest of examples require an update to the `` element, i.e. use `` not ``, to work in PyLEMS **LEMS elements that do not work** - KSChannel - Property - XPath based parameters - PathParameter - Assertions **Tasks TODO** - Implement flattening - Decouple events from runnables - Improve dimension-checking on expressions. ### Travis integration pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/). [![Build Status](https://travis-ci.com/LEMS/pylems.png?branch=master)](https://travis-ci.com/LEMS/pylems) This code is distributed under the terms of the GNU Lesser General Public License. %prep %autosetup -n PyLEMS-0.6.0 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-PyLEMS -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Fri Apr 21 2023 Python_Bot - 0.6.0-1 - Package Spec generated