%global _empty_manifest_terminate_build 0
Name:		python-abeona
Version:	0.45.0
Release:	1
Summary:	please add a summary manually as the author left a blank one
License:	Apache-2.0
URL:		https://github.com/winni2k/abeona
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/99/98/8e2d68c9e8560ea22b3791fd150efb9b5bdf139195144d75309c9c8de7e9/abeona-0.45.0.tar.gz
BuildArch:	noarch

Requires:	python3-cortexpy
Requires:	python3-pandas
Requires:	python3-progressbar2
Requires:	python3-pysam

%description
abeona v0.45.0
A simple transcriptome assembler based on kallisto and Cortex graphs.
Abeona consists of the following stages:
1. Assembly of reads into a De Bruijn graph
2. Pruning of tips and low-coverage unitigs
3. Partitioning of the De Bruijn graph into subgraphs
4. Generation of candidate transcripts by simple path traversal
5. Filtering of candidate transcripts by kallisto

%package -n python3-abeona
Summary:	please add a summary manually as the author left a blank one
Provides:	python-abeona
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-abeona
abeona v0.45.0
A simple transcriptome assembler based on kallisto and Cortex graphs.
Abeona consists of the following stages:
1. Assembly of reads into a De Bruijn graph
2. Pruning of tips and low-coverage unitigs
3. Partitioning of the De Bruijn graph into subgraphs
4. Generation of candidate transcripts by simple path traversal
5. Filtering of candidate transcripts by kallisto

%package help
Summary:	Development documents and examples for abeona
Provides:	python3-abeona-doc
%description help
abeona v0.45.0
A simple transcriptome assembler based on kallisto and Cortex graphs.
Abeona consists of the following stages:
1. Assembly of reads into a De Bruijn graph
2. Pruning of tips and low-coverage unitigs
3. Partitioning of the De Bruijn graph into subgraphs
4. Generation of candidate transcripts by simple path traversal
5. Filtering of candidate transcripts by kallisto

%prep
%autosetup -n abeona-0.45.0

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-abeona -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.45.0-1
- Package Spec generated