Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1683886297.049052/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffffaf098e10>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
/etc/profile.d/system-info.sh: line 55: ps: command not found
Building target platforms: aarch64
Building for target aarch64
Wrote: /builddir/build/SRPMS/python-bohra-2.2.1-1.src.rpm
Child return code was: 0
Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1683886297.049052/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff812e22d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
/etc/profile.d/system-info.sh: line 55: ps: command not found
Building target platforms: aarch64
Building for target aarch64
Wrote: /builddir/build/SRPMS/python-bohra-2.2.1-1.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-aarch64-1683886297.049052/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff812e22d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target aarch64 --nodeps /builddir/build/SPECS/python-bohra.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
/etc/profile.d/system-info.sh: line 55: ps: command not found
Building target platforms: aarch64
Building for target aarch64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TcgYZy
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bohra-2.2.1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/bohra-2.2.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bohra-2.2.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.v0tTr2
+ umask 022
+ cd /builddir/build/BUILD
+ cd bohra-2.2.1
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s'
running build
running build_py
creating build
creating build/lib
creating build/lib/bohra
copying bohra/CustomLog.py -> build/lib/bohra
copying bohra/Utils.py -> build/lib/bohra
copying bohra/bohra.py -> build/lib/bohra
copying bohra/version.py -> build/lib/bohra
copying bohra/__init__.py -> build/lib/bohra
copying bohra/SnpDetection.py -> build/lib/bohra
running egg_info
writing bohra.egg-info/PKG-INFO
writing dependency_links to bohra.egg-info/dependency_links.txt
writing entry points to bohra.egg-info/entry_points.txt
writing requirements to bohra.egg-info/requires.txt
writing top-level names to bohra.egg-info/top_level.txt
reading manifest file 'bohra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'bohra/modules/*'
adding license file 'LICENSE.txt'
writing manifest file 'bohra.egg-info/SOURCES.txt'
copying bohra/main.nf -> build/lib/bohra
copying bohra/nextflow.config -> build/lib/bohra
creating build/lib/bohra/modules
creating build/lib/bohra/modules/collation
copying bohra/modules/collation/functions.nf -> build/lib/bohra/modules/collation
copying bohra/modules/collation/main.nf -> build/lib/bohra/modules/collation
creating build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/add_header_mlst.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/collate_asm.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/collate_kraken2.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/collate_plasmids.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/collate_stats.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/compile.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/snippy_qc.py -> build/lib/bohra/modules/collation/bin
copying bohra/modules/collation/bin/wrangle_mobsuite.py -> build/lib/bohra/modules/collation/bin
creating build/lib/bohra/modules/csvtk
copying bohra/modules/csvtk/functions.nf -> build/lib/bohra/modules/csvtk
copying bohra/modules/csvtk/main.nf -> build/lib/bohra/modules/csvtk
copying bohra/modules/csvtk/meta.yml -> build/lib/bohra/modules/csvtk
creating build/lib/bohra/modules/gubbins
copying bohra/modules/gubbins/functions.nf -> build/lib/bohra/modules/gubbins
copying bohra/modules/gubbins/main.nf -> build/lib/bohra/modules/gubbins
copying bohra/modules/gubbins/meta.yml -> build/lib/bohra/modules/gubbins
creating build/lib/bohra/modules/iqtree
copying bohra/modules/iqtree/functions.nf -> build/lib/bohra/modules/iqtree
copying bohra/modules/iqtree/main.nf -> build/lib/bohra/modules/iqtree
copying bohra/modules/iqtree/meta.yml -> build/lib/bohra/modules/iqtree
creating build/lib/bohra/modules/iqtree/bin
copying bohra/modules/iqtree/bin/iqtree_generator.sh -> build/lib/bohra/modules/iqtree/bin
creating build/lib/bohra/modules/kraken2
copying bohra/modules/kraken2/functions.nf -> build/lib/bohra/modules/kraken2
copying bohra/modules/kraken2/main.nf -> build/lib/bohra/modules/kraken2
copying bohra/modules/kraken2/meta.yml -> build/lib/bohra/modules/kraken2
creating build/lib/bohra/modules/mash
creating build/lib/bohra/modules/mash/sketch
copying bohra/modules/mash/sketch/functions.nf -> build/lib/bohra/modules/mash/sketch
copying bohra/modules/mash/sketch/main.nf -> build/lib/bohra/modules/mash/sketch
copying bohra/modules/mash/sketch/meta.yml -> build/lib/bohra/modules/mash/sketch
creating build/lib/bohra/modules/mash/triangle
copying bohra/modules/mash/triangle/functions.nf -> build/lib/bohra/modules/mash/triangle
copying bohra/modules/mash/triangle/main.nf -> build/lib/bohra/modules/mash/triangle
copying bohra/modules/mash/triangle/meta.yml -> build/lib/bohra/modules/mash/triangle
creating build/lib/bohra/modules/mlst
copying bohra/modules/mlst/functions.nf -> build/lib/bohra/modules/mlst
copying bohra/modules/mlst/main.nf -> build/lib/bohra/modules/mlst
copying bohra/modules/mlst/meta.yml -> build/lib/bohra/modules/mlst
creating build/lib/bohra/modules/mobsuite
copying bohra/modules/mobsuite/functions.nf -> build/lib/bohra/modules/mobsuite
copying bohra/modules/mobsuite/main.nf -> build/lib/bohra/modules/mobsuite
copying bohra/modules/mobsuite/meta.yml -> build/lib/bohra/modules/mobsuite
creating build/lib/bohra/modules/panaroo
copying bohra/modules/panaroo/functions.nf -> build/lib/bohra/modules/panaroo
copying bohra/modules/panaroo/main.nf -> build/lib/bohra/modules/panaroo
copying bohra/modules/panaroo/meta.yml -> build/lib/bohra/modules/panaroo
creating build/lib/bohra/modules/prokka
copying bohra/modules/prokka/functions.nf -> build/lib/bohra/modules/prokka
copying bohra/modules/prokka/main.nf -> build/lib/bohra/modules/prokka
copying bohra/modules/prokka/meta.yml -> build/lib/bohra/modules/prokka
creating build/lib/bohra/modules/quicktree
copying bohra/modules/quicktree/functions.nf -> build/lib/bohra/modules/quicktree
copying bohra/modules/quicktree/main.nf -> build/lib/bohra/modules/quicktree
copying bohra/modules/quicktree/meta.yml -> build/lib/bohra/modules/quicktree
creating build/lib/bohra/modules/resistome
copying bohra/modules/resistome/functions.nf -> build/lib/bohra/modules/resistome
copying bohra/modules/resistome/main.nf -> build/lib/bohra/modules/resistome
copying bohra/modules/resistome/meta.yml -> build/lib/bohra/modules/resistome
creating build/lib/bohra/modules/resistome/bin
copying bohra/modules/resistome/bin/combine.py -> build/lib/bohra/modules/resistome/bin
copying bohra/modules/resistome/bin/concat.py -> build/lib/bohra/modules/resistome/bin
copying bohra/modules/resistome/bin/meta.yaml -> build/lib/bohra/modules/resistome/bin
creating build/lib/bohra/modules/roary2svg
copying bohra/modules/roary2svg/functions.nf -> build/lib/bohra/modules/roary2svg
copying bohra/modules/roary2svg/main.nf -> build/lib/bohra/modules/roary2svg
copying bohra/modules/roary2svg/meta.yml -> build/lib/bohra/modules/roary2svg
creating build/lib/bohra/modules/roary2svg/bin
copying bohra/modules/roary2svg/bin/roary2svg.pl -> build/lib/bohra/modules/roary2svg/bin
creating build/lib/bohra/modules/seqkit
creating build/lib/bohra/modules/seqkit/fx2tab
copying bohra/modules/seqkit/fx2tab/functions.nf -> build/lib/bohra/modules/seqkit/fx2tab
copying bohra/modules/seqkit/fx2tab/main.nf -> build/lib/bohra/modules/seqkit/fx2tab
copying bohra/modules/seqkit/fx2tab/meta.yml -> build/lib/bohra/modules/seqkit/fx2tab
creating build/lib/bohra/modules/seqkit/stats
copying bohra/modules/seqkit/stats/functions.nf -> build/lib/bohra/modules/seqkit/stats
copying bohra/modules/seqkit/stats/main.nf -> build/lib/bohra/modules/seqkit/stats
copying bohra/modules/seqkit/stats/meta.yml -> build/lib/bohra/modules/seqkit/stats
creating build/lib/bohra/modules/seqtk
copying bohra/modules/seqtk/functions.nf -> build/lib/bohra/modules/seqtk
copying bohra/modules/seqtk/main.nf -> build/lib/bohra/modules/seqtk
copying bohra/modules/seqtk/meta.yml -> build/lib/bohra/modules/seqtk
creating build/lib/bohra/modules/shovill
copying bohra/modules/shovill/functions.nf -> build/lib/bohra/modules/shovill
copying bohra/modules/shovill/main.nf -> build/lib/bohra/modules/shovill
copying bohra/modules/shovill/meta.yml -> build/lib/bohra/modules/shovill
creating build/lib/bohra/modules/skesa
copying bohra/modules/skesa/functions.nf -> build/lib/bohra/modules/skesa
copying bohra/modules/skesa/main.nf -> build/lib/bohra/modules/skesa
copying bohra/modules/skesa/meta.yml -> build/lib/bohra/modules/skesa
creating build/lib/bohra/modules/snippy
copying bohra/modules/snippy/functions.nf -> build/lib/bohra/modules/snippy
copying bohra/modules/snippy/main.nf -> build/lib/bohra/modules/snippy
copying bohra/modules/snippy/meta.yml -> build/lib/bohra/modules/snippy
creating build/lib/bohra/modules/snippy_clean
copying bohra/modules/snippy_clean/functions.nf -> build/lib/bohra/modules/snippy_clean
copying bohra/modules/snippy_clean/main.nf -> build/lib/bohra/modules/snippy_clean
copying bohra/modules/snippy_clean/meta.yml -> build/lib/bohra/modules/snippy_clean
creating build/lib/bohra/modules/snippy_core
copying bohra/modules/snippy_core/functions.nf -> build/lib/bohra/modules/snippy_core
copying bohra/modules/snippy_core/main.nf -> build/lib/bohra/modules/snippy_core
copying bohra/modules/snippy_core/meta.yml -> build/lib/bohra/modules/snippy_core
creating build/lib/bohra/modules/snp_dists
copying bohra/modules/snp_dists/functions.nf -> build/lib/bohra/modules/snp_dists
copying bohra/modules/snp_dists/main.nf -> build/lib/bohra/modules/snp_dists
copying bohra/modules/snp_dists/meta.yml -> build/lib/bohra/modules/snp_dists
creating build/lib/bohra/modules/spades
copying bohra/modules/spades/functions.nf -> build/lib/bohra/modules/spades
copying bohra/modules/spades/main.nf -> build/lib/bohra/modules/spades
copying bohra/modules/spades/meta.yml -> build/lib/bohra/modules/spades
creating build/lib/bohra/templates
copying bohra/templates/cluster.tmpl -> build/lib/bohra/templates
copying bohra/templates/config_snippy.yaml -> build/lib/bohra/templates
copying bohra/templates/index.html -> build/lib/bohra/templates
copying bohra/templates/report_analysis.json -> build/lib/bohra/templates
creating build/lib/bohra/tests
copying bohra/tests/test.bed -> build/lib/bohra/tests
copying bohra/tests/test.gbk -> build/lib/bohra/tests
copying bohra/tests/test.tab -> build/lib/bohra/tests
copying bohra/tests/test_bohra.py -> build/lib/bohra/tests
copying bohra/tests/test_file.txt -> build/lib/bohra/tests
creating build/lib/bohra/workflows
copying bohra/workflows/assemble_typing.nf -> build/lib/bohra/workflows
copying bohra/workflows/collation.nf -> build/lib/bohra/workflows
copying bohra/workflows/common.nf -> build/lib/bohra/workflows
copying bohra/workflows/default.nf -> build/lib/bohra/workflows
copying bohra/workflows/pangenome.nf -> build/lib/bohra/workflows
copying bohra/workflows/preview.nf -> build/lib/bohra/workflows
+ sleep 1
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3ltFao
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
++ dirname /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
+ cd bohra-2.2.1
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
running install
/usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running install_lib
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/nextflow.config -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/CustomLog.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/Utils.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/templates
copying build/lib/bohra/templates/report_analysis.json -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/templates
copying build/lib/bohra/templates/index.html -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/templates
copying build/lib/bohra/templates/config_snippy.yaml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/templates
copying build/lib/bohra/templates/cluster.tmpl -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/templates
copying build/lib/bohra/bohra.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/version.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/__init__.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
copying build/lib/bohra/SnpDetection.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/assemble_typing.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/collation.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/preview.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/default.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/pangenome.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/workflows/common.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/workflows
copying build/lib/bohra/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/quicktree
copying build/lib/bohra/modules/quicktree/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/quicktree
copying build/lib/bohra/modules/quicktree/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/quicktree
copying build/lib/bohra/modules/quicktree/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/quicktree
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_core
copying build/lib/bohra/modules/snippy_core/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_core
copying build/lib/bohra/modules/snippy_core/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_core
copying build/lib/bohra/modules/snippy_core/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_core
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/shovill
copying build/lib/bohra/modules/shovill/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/shovill
copying build/lib/bohra/modules/shovill/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/shovill
copying build/lib/bohra/modules/shovill/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/shovill
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation
copying build/lib/bohra/modules/collation/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/add_header_mlst.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/collate_kraken2.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/collate_asm.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/snippy_qc.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/collate_stats.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/wrangle_mobsuite.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/compile.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/bin/collate_plasmids.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin
copying build/lib/bohra/modules/collation/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/spades
copying build/lib/bohra/modules/spades/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/spades
copying build/lib/bohra/modules/spades/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/spades
copying build/lib/bohra/modules/spades/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/spades
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/csvtk
copying build/lib/bohra/modules/csvtk/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/csvtk
copying build/lib/bohra/modules/csvtk/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/csvtk
copying build/lib/bohra/modules/csvtk/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/csvtk
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_clean
copying build/lib/bohra/modules/snippy_clean/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_clean
copying build/lib/bohra/modules/snippy_clean/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_clean
copying build/lib/bohra/modules/snippy_clean/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy_clean
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome
copying build/lib/bohra/modules/resistome/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome
copying build/lib/bohra/modules/resistome/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin
copying build/lib/bohra/modules/resistome/bin/concat.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin
copying build/lib/bohra/modules/resistome/bin/meta.yaml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin
copying build/lib/bohra/modules/resistome/bin/combine.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin
copying build/lib/bohra/modules/resistome/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mlst
copying build/lib/bohra/modules/mlst/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mlst
copying build/lib/bohra/modules/mlst/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mlst
copying build/lib/bohra/modules/mlst/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mlst
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/kraken2
copying build/lib/bohra/modules/kraken2/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/kraken2
copying build/lib/bohra/modules/kraken2/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/kraken2
copying build/lib/bohra/modules/kraken2/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/kraken2
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg
copying build/lib/bohra/modules/roary2svg/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg
copying build/lib/bohra/modules/roary2svg/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg/bin
copying build/lib/bohra/modules/roary2svg/bin/roary2svg.pl -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg/bin
copying build/lib/bohra/modules/roary2svg/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/roary2svg
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/skesa
copying build/lib/bohra/modules/skesa/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/skesa
copying build/lib/bohra/modules/skesa/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/skesa
copying build/lib/bohra/modules/skesa/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/skesa
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/prokka
copying build/lib/bohra/modules/prokka/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/prokka
copying build/lib/bohra/modules/prokka/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/prokka
copying build/lib/bohra/modules/prokka/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/prokka
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/panaroo
copying build/lib/bohra/modules/panaroo/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/panaroo
copying build/lib/bohra/modules/panaroo/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/panaroo
copying build/lib/bohra/modules/panaroo/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/panaroo
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree
copying build/lib/bohra/modules/iqtree/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree
copying build/lib/bohra/modules/iqtree/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree/bin
copying build/lib/bohra/modules/iqtree/bin/iqtree_generator.sh -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree/bin
copying build/lib/bohra/modules/iqtree/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/iqtree
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/sketch
copying build/lib/bohra/modules/mash/sketch/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/sketch
copying build/lib/bohra/modules/mash/sketch/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/sketch
copying build/lib/bohra/modules/mash/sketch/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/sketch
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/triangle
copying build/lib/bohra/modules/mash/triangle/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/triangle
copying build/lib/bohra/modules/mash/triangle/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/triangle
copying build/lib/bohra/modules/mash/triangle/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mash/triangle
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snp_dists
copying build/lib/bohra/modules/snp_dists/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snp_dists
copying build/lib/bohra/modules/snp_dists/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snp_dists
copying build/lib/bohra/modules/snp_dists/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snp_dists
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqtk
copying build/lib/bohra/modules/seqtk/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqtk
copying build/lib/bohra/modules/seqtk/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqtk
copying build/lib/bohra/modules/seqtk/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqtk
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/gubbins
copying build/lib/bohra/modules/gubbins/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/gubbins
copying build/lib/bohra/modules/gubbins/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/gubbins
copying build/lib/bohra/modules/gubbins/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/gubbins
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mobsuite
copying build/lib/bohra/modules/mobsuite/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mobsuite
copying build/lib/bohra/modules/mobsuite/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mobsuite
copying build/lib/bohra/modules/mobsuite/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/mobsuite
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy
copying build/lib/bohra/modules/snippy/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy
copying build/lib/bohra/modules/snippy/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy
copying build/lib/bohra/modules/snippy/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/snippy
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/fx2tab
copying build/lib/bohra/modules/seqkit/fx2tab/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/fx2tab
copying build/lib/bohra/modules/seqkit/fx2tab/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/fx2tab
copying build/lib/bohra/modules/seqkit/fx2tab/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/fx2tab
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/stats
copying build/lib/bohra/modules/seqkit/stats/meta.yml -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/stats
copying build/lib/bohra/modules/seqkit/stats/functions.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/stats
copying build/lib/bohra/modules/seqkit/stats/main.nf -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/seqkit/stats
creating /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
copying build/lib/bohra/tests/test.tab -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
copying build/lib/bohra/tests/test.gbk -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
copying build/lib/bohra/tests/test_bohra.py -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
copying build/lib/bohra/tests/test.bed -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
copying build/lib/bohra/tests/test_file.txt -> /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/CustomLog.py to CustomLog.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/Utils.py to Utils.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/bohra.py to bohra.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/version.py to version.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/__init__.py to __init__.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/SnpDetection.py to SnpDetection.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/add_header_mlst.py to add_header_mlst.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/collate_kraken2.py to collate_kraken2.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/collate_asm.py to collate_asm.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/snippy_qc.py to snippy_qc.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/collate_stats.py to collate_stats.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/wrangle_mobsuite.py to wrangle_mobsuite.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/compile.py to compile.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/collation/bin/collate_plasmids.py to collate_plasmids.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin/concat.py to concat.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/modules/resistome/bin/combine.py to combine.cpython-39.pyc
byte-compiling /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra/tests/test_bohra.py to test_bohra.cpython-39.pyc
writing byte-compilation script '/tmp/tmpwvxxijaq.py'
/usr/bin/python3 /tmp/tmpwvxxijaq.py
removing /tmp/tmpwvxxijaq.py
running install_egg_info
running egg_info
writing bohra.egg-info/PKG-INFO
writing dependency_links to bohra.egg-info/dependency_links.txt
writing entry points to bohra.egg-info/entry_points.txt
writing requirements to bohra.egg-info/requires.txt
writing top-level names to bohra.egg-info/top_level.txt
reading manifest file 'bohra.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'bohra/modules/*'
adding license file 'LICENSE.txt'
writing manifest file 'bohra.egg-info/SOURCES.txt'
Copying bohra.egg-info to /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9/site-packages/bohra-2.2.1-py3.9.egg-info
running install_scripts
Installing bohra script to /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/bin
+ install -d -m755 /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64//usr/share/doc/python-bohra
+ '[' -d doc ']'
~/build/BUILDROOT/python-bohra-2.2.1-1.aarch64 ~/build/BUILD/bohra-2.2.1
+ '[' -d docs ']'
+ '[' -d example ']'
+ '[' -d examples ']'
+ pushd /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
+ '[' -d usr/lib ']'
+ find usr/lib -type f -printf '/%h/%f\n'
+ '[' -d usr/lib64 ']'
+ '[' -d usr/bin ']'
+ find usr/bin -type f -printf '/%h/%f\n'
+ '[' -d usr/sbin ']'
+ touch doclist.lst
+ '[' -d usr/share/man ']'
~/build/BUILD/bohra-2.2.1
+ popd
+ mv /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/filelist.lst .
+ mv /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/doclist.lst .
+ /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 2.2.1-1 --unique-debug-suffix -2.2.1-1.aarch64 --unique-debug-src-base python-bohra-2.2.1-1.aarch64 -S debugsourcefiles.list /builddir/build/BUILD/bohra-2.2.1
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
Bytecompiling .py files below /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64/usr/lib/python3.9 using /usr/bin/python3.9
+ /usr/lib/rpm/brp-python-hardlink
Processing files: python3-bohra-2.2.1-1.noarch
Provides: python-bohra python3-bohra = 2.2.1-1 python3.9dist(bohra) = 2.2.1 python3dist(bohra) = 2.2.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/bash /usr/bin/env /usr/bin/python3 python(abi) = 3.9 python3.9dist(altair) python3.9dist(biopython) >= 1.70 python3.9dist(jinja2) python3.9dist(numpy) = 1.23.1 python3.9dist(packaging) python3.9dist(pandas) = 1.0.5 python3.9dist(psutil) python3.9dist(pytest) python3.9dist(setuptools) python3.9dist(sh)
Processing files: python-bohra-help-2.2.1-1.noarch
warning: Empty %files file /builddir/build/BUILD/bohra-2.2.1/doclist.lst
Provides: python-bohra-help = 2.2.1-1 python3-bohra-doc
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
Wrote: /builddir/build/RPMS/python-bohra-help-2.2.1-1.noarch.rpm
Wrote: /builddir/build/RPMS/python3-bohra-2.2.1-1.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.0uLrLQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd bohra-2.2.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-bohra-2.2.1-1.aarch64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0