%global _empty_manifest_terminate_build 0
Name:		python-bcbio-nextgen
Version:	1.1.5
Release:	1
Summary:	Best-practice pipelines for fully automated high throughput sequencing analysis
License:	MIT
URL:		https://github.com/bcbio/bcbio-nextgen
Source0:	https://mirrors.aliyun.com/pypi/web/packages/9d/7e/452e1d1051c19c2414f7583c796dc2b165740cf1750f1b6c89226bb8f4c2/bcbio-nextgen-1.1.5.tar.gz
BuildArch:	noarch


%description
- Community developed: We welcome contributors with the goal of
  overcoming the biological, algorithmic and computational challenges
  that face individual developers working on complex pipelines in
  quickly changing research areas. See our `users page`_ for examples
  of bcbio-nextgen deployments, and the `developer documentation`_ for
  tips on contributing.
- Installation: `A single installer script`_ prepares all
  third party software, data libraries and system configuration files.
- `Automated validation`_: Compare variant calls against common reference
  materials or sample specific SNP arrays to ensure call correctness.
  Incorporation of multiple approaches for alignment, preparation and
  variant calling enable unbiased comparisons of algorithms.
- Distributed: Focus on `parallel analysis and scaling`_ to handle
  large population studies and whole genome analysis. Runs on single
  multicore computers, in compute clusters using `IPython parallel`_,
  or on the Amazon cloud. See the `parallel documentation`_ for full
  details.
- Multiple analysis algorithms: bcbio-nextgen provides configurable
  `variant calling, RNA-seq and small RNA pipelines`_.

%package -n python3-bcbio-nextgen
Summary:	Best-practice pipelines for fully automated high throughput sequencing analysis
Provides:	python-bcbio-nextgen
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-bcbio-nextgen
- Community developed: We welcome contributors with the goal of
  overcoming the biological, algorithmic and computational challenges
  that face individual developers working on complex pipelines in
  quickly changing research areas. See our `users page`_ for examples
  of bcbio-nextgen deployments, and the `developer documentation`_ for
  tips on contributing.
- Installation: `A single installer script`_ prepares all
  third party software, data libraries and system configuration files.
- `Automated validation`_: Compare variant calls against common reference
  materials or sample specific SNP arrays to ensure call correctness.
  Incorporation of multiple approaches for alignment, preparation and
  variant calling enable unbiased comparisons of algorithms.
- Distributed: Focus on `parallel analysis and scaling`_ to handle
  large population studies and whole genome analysis. Runs on single
  multicore computers, in compute clusters using `IPython parallel`_,
  or on the Amazon cloud. See the `parallel documentation`_ for full
  details.
- Multiple analysis algorithms: bcbio-nextgen provides configurable
  `variant calling, RNA-seq and small RNA pipelines`_.

%package help
Summary:	Development documents and examples for bcbio-nextgen
Provides:	python3-bcbio-nextgen-doc
%description help
- Community developed: We welcome contributors with the goal of
  overcoming the biological, algorithmic and computational challenges
  that face individual developers working on complex pipelines in
  quickly changing research areas. See our `users page`_ for examples
  of bcbio-nextgen deployments, and the `developer documentation`_ for
  tips on contributing.
- Installation: `A single installer script`_ prepares all
  third party software, data libraries and system configuration files.
- `Automated validation`_: Compare variant calls against common reference
  materials or sample specific SNP arrays to ensure call correctness.
  Incorporation of multiple approaches for alignment, preparation and
  variant calling enable unbiased comparisons of algorithms.
- Distributed: Focus on `parallel analysis and scaling`_ to handle
  large population studies and whole genome analysis. Runs on single
  multicore computers, in compute clusters using `IPython parallel`_,
  or on the Amazon cloud. See the `parallel documentation`_ for full
  details.
- Multiple analysis algorithms: bcbio-nextgen provides configurable
  `variant calling, RNA-seq and small RNA pipelines`_.

%prep
%autosetup -n bcbio-nextgen-1.1.5

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-bcbio-nextgen -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Fri Jun 09 2023 Python_Bot <Python_Bot@openeuler.org> - 1.1.5-1
- Package Spec generated