%global _empty_manifest_terminate_build 0 Name: python-pyfaidx Version: 0.7.2.1 Release: 1 Summary: pyfaidx: efficient pythonic random access to fasta subsequences License: BSD-3-Clause URL: https://github.com/mdshw5/pyfaidx/ Source0: https://mirrors.nju.edu.cn/pypi/web/packages/41/f0/3790aa6676987db69f7c7eeb01096d7836196f3c10d025a2e038f9e84728/pyfaidx-0.7.2.1.tar.gz BuildArch: noarch Requires: python3-six Requires: python3-setuptools %description Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the `pygr`_ seqdb module. A command-line script "`faidx`_" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge. If you use pyfaidx in your publication, please cite: `Shirley MD`_, `Ma Z`_, `Pedersen B`_, `Wheelan S`_. `Efficient "pythonic" access to FASTA files using pyfaidx `_. PeerJ PrePrints 3:e1196. 2015. %package -n python3-pyfaidx Summary: pyfaidx: efficient pythonic random access to fasta subsequences Provides: python-pyfaidx BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-pyfaidx Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the `pygr`_ seqdb module. A command-line script "`faidx`_" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge. If you use pyfaidx in your publication, please cite: `Shirley MD`_, `Ma Z`_, `Pedersen B`_, `Wheelan S`_. `Efficient "pythonic" access to FASTA files using pyfaidx `_. PeerJ PrePrints 3:e1196. 2015. %package help Summary: Development documents and examples for pyfaidx Provides: python3-pyfaidx-doc %description help Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the `pygr`_ seqdb module. A command-line script "`faidx`_" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge. If you use pyfaidx in your publication, please cite: `Shirley MD`_, `Ma Z`_, `Pedersen B`_, `Wheelan S`_. `Efficient "pythonic" access to FASTA files using pyfaidx `_. PeerJ PrePrints 3:e1196. 2015. %prep %autosetup -n pyfaidx-0.7.2.1 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-pyfaidx -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue Apr 11 2023 Python_Bot - 0.7.2.1-1 - Package Spec generated