%global _empty_manifest_terminate_build 0 Name: python-bioutils Version: 0.5.7 Release: 1 Summary: miscellaneous simple bioinformatics utilities and lookup tables License: Apache Software License URL: https://github.com/biocommons/bioutils Source0: https://mirrors.nju.edu.cn/pypi/web/packages/16/d1/e73a3c707f39bf42019c11835a03650698229527bc4b8b77aa399e0c35d0/bioutils-0.5.7.tar.gz BuildArch: noarch Requires: python3-attrs Requires: python3-requests Requires: python3-ipython Requires: python3-jupyter Requires: python3-restview Requires: python3-sphinx Requires: python3-black Requires: python3-flake8 Requires: python3-isort Requires: python3-pytest Requires: python3-pytest-cov Requires: python3-pytest-optional-tests Requires: python3-tox Requires: python3-vcrpy Requires: python3-yapf %description bioutils -- bioinformatics utilities and lookup tables !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! |pypi_badge| |build_status| |cov_badge| |cc_badge| |issues_badge| |contributors| |license| |changelog| bioutils provides some common utilities and lookup tables for bioinformatics. * bioutils.accessions -- parse accessions, infer namespaces * bioutils.assemblies -- Human assembly information (from NCBI/GRCh) * bioutils.cytobands -- map cytobands to coordinates (from UCSC cytoband tables) * bioutils.digests -- implementations of various digests * bioutils.normalize -- allele normalization (left shuffle, right shuffle, expanded, vcf) To use an E-Utilities API key run add it to an environment variable called `ncbi_api_key` and it will be used in the E-Utilities request. .. |build_status| image:: https://travis-ci.org/biocommons/bioutils.svg?branch=master :target: https://travis-ci.org/biocommons/bioutils .. |changelog| image:: https://img.shields.io/badge/docs-changelog-green.svg :target: https://bioutils.readthedocs.io .. |contributors| image:: https://img.shields.io/github/contributors/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils .. |docs| image:: https://img.shields.io/badge/docs-readthedocs-green.svg :target: http://bioutils.readthedocs.io/ .. |issues_badge| image:: https://img.shields.io/github/issues/biocommons/bioutils.png :target: https://github.com/biocommons/bioutils/issues .. |license| image:: https://img.shields.io/github/license/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils/blob/master/LICENSE .. |pypi_badge| image:: https://img.shields.io/pypi/v/bioutils.svg :target: https://pypi.org/project/bioutils/ .. |cc_badge| image:: https://api.codeclimate.com/v1/badges/3a99e06ad0a842174b0a/maintainability :target: https://codeclimate.com/github/biocommons/bioutils/maintainability :alt: Maintainability .. |cov_badge| image:: https://coveralls.io/repos/github/biocommons/bioutils/badge.svg?branch=master :target: https://coveralls.io/github/biocommons/bioutils?branch=master %package -n python3-bioutils Summary: miscellaneous simple bioinformatics utilities and lookup tables Provides: python-bioutils BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-bioutils bioutils -- bioinformatics utilities and lookup tables !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! |pypi_badge| |build_status| |cov_badge| |cc_badge| |issues_badge| |contributors| |license| |changelog| bioutils provides some common utilities and lookup tables for bioinformatics. * bioutils.accessions -- parse accessions, infer namespaces * bioutils.assemblies -- Human assembly information (from NCBI/GRCh) * bioutils.cytobands -- map cytobands to coordinates (from UCSC cytoband tables) * bioutils.digests -- implementations of various digests * bioutils.normalize -- allele normalization (left shuffle, right shuffle, expanded, vcf) To use an E-Utilities API key run add it to an environment variable called `ncbi_api_key` and it will be used in the E-Utilities request. .. |build_status| image:: https://travis-ci.org/biocommons/bioutils.svg?branch=master :target: https://travis-ci.org/biocommons/bioutils .. |changelog| image:: https://img.shields.io/badge/docs-changelog-green.svg :target: https://bioutils.readthedocs.io .. |contributors| image:: https://img.shields.io/github/contributors/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils .. |docs| image:: https://img.shields.io/badge/docs-readthedocs-green.svg :target: http://bioutils.readthedocs.io/ .. |issues_badge| image:: https://img.shields.io/github/issues/biocommons/bioutils.png :target: https://github.com/biocommons/bioutils/issues .. |license| image:: https://img.shields.io/github/license/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils/blob/master/LICENSE .. |pypi_badge| image:: https://img.shields.io/pypi/v/bioutils.svg :target: https://pypi.org/project/bioutils/ .. |cc_badge| image:: https://api.codeclimate.com/v1/badges/3a99e06ad0a842174b0a/maintainability :target: https://codeclimate.com/github/biocommons/bioutils/maintainability :alt: Maintainability .. |cov_badge| image:: https://coveralls.io/repos/github/biocommons/bioutils/badge.svg?branch=master :target: https://coveralls.io/github/biocommons/bioutils?branch=master %package help Summary: Development documents and examples for bioutils Provides: python3-bioutils-doc %description help bioutils -- bioinformatics utilities and lookup tables !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! |pypi_badge| |build_status| |cov_badge| |cc_badge| |issues_badge| |contributors| |license| |changelog| bioutils provides some common utilities and lookup tables for bioinformatics. * bioutils.accessions -- parse accessions, infer namespaces * bioutils.assemblies -- Human assembly information (from NCBI/GRCh) * bioutils.cytobands -- map cytobands to coordinates (from UCSC cytoband tables) * bioutils.digests -- implementations of various digests * bioutils.normalize -- allele normalization (left shuffle, right shuffle, expanded, vcf) To use an E-Utilities API key run add it to an environment variable called `ncbi_api_key` and it will be used in the E-Utilities request. .. |build_status| image:: https://travis-ci.org/biocommons/bioutils.svg?branch=master :target: https://travis-ci.org/biocommons/bioutils .. |changelog| image:: https://img.shields.io/badge/docs-changelog-green.svg :target: https://bioutils.readthedocs.io .. |contributors| image:: https://img.shields.io/github/contributors/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils .. |docs| image:: https://img.shields.io/badge/docs-readthedocs-green.svg :target: http://bioutils.readthedocs.io/ .. |issues_badge| image:: https://img.shields.io/github/issues/biocommons/bioutils.png :target: https://github.com/biocommons/bioutils/issues .. |license| image:: https://img.shields.io/github/license/biocommons/bioutils.svg :target: https://github.com/biocommons/bioutils/blob/master/LICENSE .. |pypi_badge| image:: https://img.shields.io/pypi/v/bioutils.svg :target: https://pypi.org/project/bioutils/ .. |cc_badge| image:: https://api.codeclimate.com/v1/badges/3a99e06ad0a842174b0a/maintainability :target: https://codeclimate.com/github/biocommons/bioutils/maintainability :alt: Maintainability .. |cov_badge| image:: https://coveralls.io/repos/github/biocommons/bioutils/badge.svg?branch=master :target: https://coveralls.io/github/biocommons/bioutils?branch=master %prep %autosetup -n bioutils-0.5.7 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-bioutils -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue Apr 11 2023 Python_Bot - 0.5.7-1 - Package Spec generated