%global _empty_manifest_terminate_build 0 Name: python-metadmg Version: 0.38.0 Release: 1 Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly License: MIT URL: https://github.com/metaDMG/metaDMG/ Source0: https://mirrors.nju.edu.cn/pypi/web/packages/1b/9c/6099ace99f011544eee2061efffae66ce232badec0b7dbae74280548431e/metadmg-0.38.0.tar.gz BuildArch: noarch Requires: python3-PyYAML Requires: python3-customtkinter Requires: python3-dash-bootstrap-components Requires: python3-dash[diskcache] Requires: python3-flatbuffers Requires: python3-iminuit Requires: python3-joblib Requires: python3-logger-tt Requires: python3-matplotlib Requires: python3-natsort Requires: python3-numba Requires: python3-numpyro Requires: python3-orjson Requires: python3-pandas Requires: python3-plotly Requires: python3-psutil Requires: python3-pyarrow Requires: python3-scipy Requires: python3-tqdm Requires: python3-typer[all] %description ![Logo](docs/source/images/logo.png) # A fast and accurate ancient DNA damage toolkit for metagenomic data [![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/) [![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//) ![](https://img.shields.io/pypi/v/metadmg) ![](https://img.shields.io/pypi/pyversions/metaDMG) `metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. ## Table of contents * [Getting started](#getting-started) * [Citing metaDMG](#citing-metadmg) ## Getting Started For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). ## Citing `metaDMG` Here will be more information once our paper is released. %package -n python3-metadmg Summary: metaDMG: Estimating ancient damage in (meta)genomic DNA rapidly Provides: python-metadmg BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-metadmg ![Logo](docs/source/images/logo.png) # A fast and accurate ancient DNA damage toolkit for metagenomic data [![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/) [![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//) ![](https://img.shields.io/pypi/v/metadmg) ![](https://img.shields.io/pypi/pyversions/metaDMG) `metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. ## Table of contents * [Getting started](#getting-started) * [Citing metaDMG](#citing-metadmg) ## Getting Started For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). ## Citing `metaDMG` Here will be more information once our paper is released. %package help Summary: Development documents and examples for metadmg Provides: python3-metadmg-doc %description help ![Logo](docs/source/images/logo.png) # A fast and accurate ancient DNA damage toolkit for metagenomic data [![Documentation](https://img.shields.io/badge/documentation-latest-blue.svg)](https://metadmg-dev.github.io/metaDMG-core/) [![Documentation](https://img.shields.io/badge/dashboard-live-blue.svg)](https://metadmg.onrender.com//) ![](https://img.shields.io/pypi/v/metadmg) ![](https://img.shields.io/pypi/pyversions/metaDMG) `metaDMG` is a novel framework and suite of programs for analysing large-scale genomic data especially in the context of environmental DNA. This includes state-of-the-art statistical methods for computing nucleotide misincorporation and fragmentation patterns of even highly complex samples. For more information, see the [documentation](https://metadmg-dev.github.io/metaDMG-core). For a quick preview of the interactivity, see the [live dashboard](https://metadmg.onrender.com/). Do note that the speed of the live dashboard is severely limited since it's running on a free server and thus indicative of the actual speed of the dashboard. ## Table of contents * [Getting started](#getting-started) * [Citing metaDMG](#citing-metadmg) ## Getting Started For information about how to get started running `metaDMG`, see the section in the [documentation](https://metadmg-dev.github.io/metaDMG-core/getting-started.html). ## Citing `metaDMG` Here will be more information once our paper is released. %prep %autosetup -n metadmg-0.38.0 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-metadmg -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Fri May 05 2023 Python_Bot - 0.38.0-1 - Package Spec generated