%global _empty_manifest_terminate_build 0 Name: python-rust_sbml Version: 0.7.0 Release: 1 Summary: A parser for SBML License: MIT OR Apache-2.0 URL: https://pypi.org/project/rust_sbml/ Source0: https://mirrors.nju.edu.cn/pypi/web/packages/57/79/e2d5eb1f16c265e4744db5925adabcc8a8fbef20d746a1b5bcc27c32d589/rust_sbml-0.7.0.tar.gz BuildArch: noarch %description [![Crates.io](https://img.shields.io/crates/v/rust_sbml.svg)](https://crates.io/crates/rust_sbml) [![pypi](https://img.shields.io/pypi/v/rust_sbml.svg)](https://pypi.org/project/rust_sbml/) [![Documentation](https://docs.rs/rust_sbml/badge.svg)](https://docs.rs/rust_sbml/) [![Build](https://github.com/carrascomj/rust_sbml/workflows/build/badge.svg)](https://github.com/carrascomj/rust_sbml) [![Codecov](https://codecov.io/github/carrascomj/rust_sbml/coverage.svg?branch=trunk)](https://codecov.io/gh/carrascomj/rust_sbml) # rust_sbml Parser for the [Systems Biology Markup Language (SBML)](http://sbml.org/Special/specifications/sbml-level-3/version-2/core/release-2/sbml-level-3-version-2-release-2-core.pdf): * [Standalone Rust library](#rust) * [Python API](#python) ## Getting started ### Rust Add it to your Cargo.toml with no default features to avoid all [PyO3](https://github.com/PyO3/pyo3) nuisances. ```toml [dependencies.rust_sbml] version = "0.7.0" default_features=false ``` For example, ```rust use rust_sbml::Model; let example=r#" "#; let result = Model::parse(example); println!("{:?}", result.unwrap()); ``` See [write_to_file.rs](https://github.com/carrascomj/rust_sbml/blob/trunk/examples/write_to_file.rs) for an example on serializing to a file. ### Python It has only been tested on Linux. #### Using pip ```shell pip install rust_sbml ``` #### From source Clone the repository. ```shell git clone https://github.com/carrascomj/rust_sbml.git ``` You need [maturin](https://github.com/PyO3/maturin) for building it. ```shell python -m pip install maturin ``` * Build locally ```shell maturin build --release pip install . ``` * Build on virtualenv (no pip install required) ```shell # --release can be omitted to speed up compilation time maturin develop --release ``` Having it installed, you can use it as a normal Python package. ```python from rust_sbml import Model sbml = Model("examples/EcoliCore.xml") reaction = sbml.getListOfReactions()[0] print(reaction.getListOfReactants()) ``` ### Milestones * `getListOfSpecies()` (id, name) * `getListOfCompartments()` (id, name) * `getListOfReactions()` (id, name) * `.getListOfReactants()` (id, name) * .`getListOfProducts()` (id, name) * Capable of retrieving FBC bounds. * Published to pypi * Kinetic Laws, with naive mathml tailored for SBML. * Metadata, with naive rdf tailored for SBML. * Test suite with python calls. * Test suite with libsbml comparison trough cobrapy. ## License Licensed under either of - Apache License, Version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or http://www.apache.org/licenses/LICENSE-2.0) - MIT license ([LICENSE-MIT](LICENSE-MIT) or http://opensource.org/licenses/MIT) at your option. ### Contribution Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions. > README.md is automatically generated on CI using [cargo-readme](https://github.com/livioribeiro/cargo-readme). Please, modify README.tpl or lib.rs instead (check [the github worflow](https://github.com/carrascomj/rust_sbml/blob/trunk/.github/workflows/readme.yml) for more details). %package -n python3-rust_sbml Summary: A parser for SBML Provides: python-rust_sbml BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-rust_sbml [![Crates.io](https://img.shields.io/crates/v/rust_sbml.svg)](https://crates.io/crates/rust_sbml) [![pypi](https://img.shields.io/pypi/v/rust_sbml.svg)](https://pypi.org/project/rust_sbml/) [![Documentation](https://docs.rs/rust_sbml/badge.svg)](https://docs.rs/rust_sbml/) [![Build](https://github.com/carrascomj/rust_sbml/workflows/build/badge.svg)](https://github.com/carrascomj/rust_sbml) [![Codecov](https://codecov.io/github/carrascomj/rust_sbml/coverage.svg?branch=trunk)](https://codecov.io/gh/carrascomj/rust_sbml) # rust_sbml Parser for the [Systems Biology Markup Language (SBML)](http://sbml.org/Special/specifications/sbml-level-3/version-2/core/release-2/sbml-level-3-version-2-release-2-core.pdf): * [Standalone Rust library](#rust) * [Python API](#python) ## Getting started ### Rust Add it to your Cargo.toml with no default features to avoid all [PyO3](https://github.com/PyO3/pyo3) nuisances. ```toml [dependencies.rust_sbml] version = "0.7.0" default_features=false ``` For example, ```rust use rust_sbml::Model; let example=r#" "#; let result = Model::parse(example); println!("{:?}", result.unwrap()); ``` See [write_to_file.rs](https://github.com/carrascomj/rust_sbml/blob/trunk/examples/write_to_file.rs) for an example on serializing to a file. ### Python It has only been tested on Linux. #### Using pip ```shell pip install rust_sbml ``` #### From source Clone the repository. ```shell git clone https://github.com/carrascomj/rust_sbml.git ``` You need [maturin](https://github.com/PyO3/maturin) for building it. ```shell python -m pip install maturin ``` * Build locally ```shell maturin build --release pip install . ``` * Build on virtualenv (no pip install required) ```shell # --release can be omitted to speed up compilation time maturin develop --release ``` Having it installed, you can use it as a normal Python package. ```python from rust_sbml import Model sbml = Model("examples/EcoliCore.xml") reaction = sbml.getListOfReactions()[0] print(reaction.getListOfReactants()) ``` ### Milestones * `getListOfSpecies()` (id, name) * `getListOfCompartments()` (id, name) * `getListOfReactions()` (id, name) * `.getListOfReactants()` (id, name) * .`getListOfProducts()` (id, name) * Capable of retrieving FBC bounds. * Published to pypi * Kinetic Laws, with naive mathml tailored for SBML. * Metadata, with naive rdf tailored for SBML. * Test suite with python calls. * Test suite with libsbml comparison trough cobrapy. ## License Licensed under either of - Apache License, Version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or http://www.apache.org/licenses/LICENSE-2.0) - MIT license ([LICENSE-MIT](LICENSE-MIT) or http://opensource.org/licenses/MIT) at your option. ### Contribution Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions. > README.md is automatically generated on CI using [cargo-readme](https://github.com/livioribeiro/cargo-readme). Please, modify README.tpl or lib.rs instead (check [the github worflow](https://github.com/carrascomj/rust_sbml/blob/trunk/.github/workflows/readme.yml) for more details). %package help Summary: Development documents and examples for rust_sbml Provides: python3-rust_sbml-doc %description help [![Crates.io](https://img.shields.io/crates/v/rust_sbml.svg)](https://crates.io/crates/rust_sbml) [![pypi](https://img.shields.io/pypi/v/rust_sbml.svg)](https://pypi.org/project/rust_sbml/) [![Documentation](https://docs.rs/rust_sbml/badge.svg)](https://docs.rs/rust_sbml/) [![Build](https://github.com/carrascomj/rust_sbml/workflows/build/badge.svg)](https://github.com/carrascomj/rust_sbml) [![Codecov](https://codecov.io/github/carrascomj/rust_sbml/coverage.svg?branch=trunk)](https://codecov.io/gh/carrascomj/rust_sbml) # rust_sbml Parser for the [Systems Biology Markup Language (SBML)](http://sbml.org/Special/specifications/sbml-level-3/version-2/core/release-2/sbml-level-3-version-2-release-2-core.pdf): * [Standalone Rust library](#rust) * [Python API](#python) ## Getting started ### Rust Add it to your Cargo.toml with no default features to avoid all [PyO3](https://github.com/PyO3/pyo3) nuisances. ```toml [dependencies.rust_sbml] version = "0.7.0" default_features=false ``` For example, ```rust use rust_sbml::Model; let example=r#" "#; let result = Model::parse(example); println!("{:?}", result.unwrap()); ``` See [write_to_file.rs](https://github.com/carrascomj/rust_sbml/blob/trunk/examples/write_to_file.rs) for an example on serializing to a file. ### Python It has only been tested on Linux. #### Using pip ```shell pip install rust_sbml ``` #### From source Clone the repository. ```shell git clone https://github.com/carrascomj/rust_sbml.git ``` You need [maturin](https://github.com/PyO3/maturin) for building it. ```shell python -m pip install maturin ``` * Build locally ```shell maturin build --release pip install . ``` * Build on virtualenv (no pip install required) ```shell # --release can be omitted to speed up compilation time maturin develop --release ``` Having it installed, you can use it as a normal Python package. ```python from rust_sbml import Model sbml = Model("examples/EcoliCore.xml") reaction = sbml.getListOfReactions()[0] print(reaction.getListOfReactants()) ``` ### Milestones * `getListOfSpecies()` (id, name) * `getListOfCompartments()` (id, name) * `getListOfReactions()` (id, name) * `.getListOfReactants()` (id, name) * .`getListOfProducts()` (id, name) * Capable of retrieving FBC bounds. * Published to pypi * Kinetic Laws, with naive mathml tailored for SBML. * Metadata, with naive rdf tailored for SBML. * Test suite with python calls. * Test suite with libsbml comparison trough cobrapy. ## License Licensed under either of - Apache License, Version 2.0, ([LICENSE-APACHE](LICENSE-APACHE) or http://www.apache.org/licenses/LICENSE-2.0) - MIT license ([LICENSE-MIT](LICENSE-MIT) or http://opensource.org/licenses/MIT) at your option. ### Contribution Unless you explicitly state otherwise, any contribution intentionally submitted for inclusion in the work by you, as defined in the Apache-2.0 license, shall be dual licensed as above, without any additional terms or conditions. > README.md is automatically generated on CI using [cargo-readme](https://github.com/livioribeiro/cargo-readme). Please, modify README.tpl or lib.rs instead (check [the github worflow](https://github.com/carrascomj/rust_sbml/blob/trunk/.github/workflows/readme.yml) for more details). %prep %autosetup -n rust_sbml-0.7.0 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-rust_sbml -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Mon May 15 2023 Python_Bot - 0.7.0-1 - Package Spec generated