%global _empty_manifest_terminate_build 0 Name: python-gencove Version: 2.4.6 Release: 1 Summary: Gencove API and CLI tool License: Apache 2.0 URL: http://docs.gencove.com Source0: https://mirrors.nju.edu.cn/pypi/web/packages/f7/ea/cc26982facf0256ec07ef600b435586e332c3ef451a2ff1168feccbcfb67/gencove-2.4.6.tar.gz BuildArch: noarch Requires: python3-dateutil Requires: python3-six Requires: python3-Click Requires: python3-requests Requires: python3-boto3 Requires: python3-progressbar2 Requires: python3-backoff Requires: python3-pydantic %description # The Gencove CLI [![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) [![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) ## What is Gencove? Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. ## Main Features It is most often used for: * [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis * [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: * Sequence (`.fastq.gz`) * Alignment (`.bam`, `.bai`) * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) * [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). ## Installation ``` # install via PyPI pip install gencove # updating to latest version pip install -U gencove ``` ## Documentation Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) %package -n python3-gencove Summary: Gencove API and CLI tool Provides: python-gencove BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-gencove # The Gencove CLI [![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) [![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) ## What is Gencove? Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. ## Main Features It is most often used for: * [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis * [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: * Sequence (`.fastq.gz`) * Alignment (`.bam`, `.bai`) * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) * [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). ## Installation ``` # install via PyPI pip install gencove # updating to latest version pip install -U gencove ``` ## Documentation Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) %package help Summary: Development documents and examples for gencove Provides: python3-gencove-doc %description help # The Gencove CLI [![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/) [![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE) ## What is Gencove? Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS). The Gencove command-line interface (CLI) can be used to easily access the Gencove platform. ## Main Features It is most often used for: * [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis * [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following: * Sequence (`.fastq.gz`) * Alignment (`.bam`, `.bai`) * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`) * [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new). ## Installation ``` # install via PyPI pip install gencove # updating to latest version pip install -U gencove ``` ## Documentation Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/) API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/) Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/) %prep %autosetup -n gencove-2.4.6 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-gencove -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Tue May 30 2023 Python_Bot - 2.4.6-1 - Package Spec generated