%global _empty_manifest_terminate_build 0
Name:		python-cigar
Version:	0.1.3
Release:	1
Summary:	manipulate SAM cigar strings
License:	MIT
URL:		https://github.com/brentp/cigar
Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/2d/5f/ffa58a8c64f811772b69a01eeab25c602b72d02a0c83006177c21abedaa3/cigar-0.1.3.tar.gz
BuildArch:	noarch


%description
cigar is a simple library for dealing with cigar strings. the most useful
feature now is soft-masking from left or right. This allows one to adjust
a SAM record only by changing the cigar string to soft-mask a number of bases
such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
downstream tools will not consider the soft-masked bases in further analysis.
```Python
>>> from cigar import Cigar
>>> c = Cigar('100M')
>>> len(c)
100
>>> str(c)
'100M'
>>> list(c.items())
[(100, 'M')]
>>> c = Cigar('20H20M20S')
>>> len(c)
40
>>> str(c)
'20H20M20S'
>>> list(c.items())
[(20, 'H'), (20, 'M'), (20, 'S')]
>>> c.mask_left(29).cigar, c.cigar
('20H9S11M20S', '20H20M20S')
>>> c = Cigar('10M20S10M')
>>> c.mask_left(10).cigar
'30S10M'
>>> c.mask_left(9).cigar
'9S1M20S10M'
>>> Cigar('10S').mask_left(10).cigar
'10S'
>>> Cigar('10H').mask_left(10).cigar
'10H'
>>> Cigar('10H').mask_left(11).cigar
'10H'
>>> Cigar('10H').mask_left(9).cigar
'10H'
>>> Cigar('1M10H').mask_left(9).cigar
'1S10H'
>>> Cigar('5M10H').mask_left(9).cigar
'5S10H'
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_left(9).cigar == c.cigar
True
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_right(9).cigar == c.cigar
True
>>> c.mask_right(11).cigar
'1S1H1S5H1S4M1S10H'
```

%package -n python3-cigar
Summary:	manipulate SAM cigar strings
Provides:	python-cigar
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-cigar
cigar is a simple library for dealing with cigar strings. the most useful
feature now is soft-masking from left or right. This allows one to adjust
a SAM record only by changing the cigar string to soft-mask a number of bases
such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
downstream tools will not consider the soft-masked bases in further analysis.
```Python
>>> from cigar import Cigar
>>> c = Cigar('100M')
>>> len(c)
100
>>> str(c)
'100M'
>>> list(c.items())
[(100, 'M')]
>>> c = Cigar('20H20M20S')
>>> len(c)
40
>>> str(c)
'20H20M20S'
>>> list(c.items())
[(20, 'H'), (20, 'M'), (20, 'S')]
>>> c.mask_left(29).cigar, c.cigar
('20H9S11M20S', '20H20M20S')
>>> c = Cigar('10M20S10M')
>>> c.mask_left(10).cigar
'30S10M'
>>> c.mask_left(9).cigar
'9S1M20S10M'
>>> Cigar('10S').mask_left(10).cigar
'10S'
>>> Cigar('10H').mask_left(10).cigar
'10H'
>>> Cigar('10H').mask_left(11).cigar
'10H'
>>> Cigar('10H').mask_left(9).cigar
'10H'
>>> Cigar('1M10H').mask_left(9).cigar
'1S10H'
>>> Cigar('5M10H').mask_left(9).cigar
'5S10H'
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_left(9).cigar == c.cigar
True
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_right(9).cigar == c.cigar
True
>>> c.mask_right(11).cigar
'1S1H1S5H1S4M1S10H'
```

%package help
Summary:	Development documents and examples for cigar
Provides:	python3-cigar-doc
%description help
cigar is a simple library for dealing with cigar strings. the most useful
feature now is soft-masking from left or right. This allows one to adjust
a SAM record only by changing the cigar string to soft-mask a number of bases
such that the rest of the SAM record (pos, tlen, etc.) remain valid, but
downstream tools will not consider the soft-masked bases in further analysis.
```Python
>>> from cigar import Cigar
>>> c = Cigar('100M')
>>> len(c)
100
>>> str(c)
'100M'
>>> list(c.items())
[(100, 'M')]
>>> c = Cigar('20H20M20S')
>>> len(c)
40
>>> str(c)
'20H20M20S'
>>> list(c.items())
[(20, 'H'), (20, 'M'), (20, 'S')]
>>> c.mask_left(29).cigar, c.cigar
('20H9S11M20S', '20H20M20S')
>>> c = Cigar('10M20S10M')
>>> c.mask_left(10).cigar
'30S10M'
>>> c.mask_left(9).cigar
'9S1M20S10M'
>>> Cigar('10S').mask_left(10).cigar
'10S'
>>> Cigar('10H').mask_left(10).cigar
'10H'
>>> Cigar('10H').mask_left(11).cigar
'10H'
>>> Cigar('10H').mask_left(9).cigar
'10H'
>>> Cigar('1M10H').mask_left(9).cigar
'1S10H'
>>> Cigar('5M10H').mask_left(9).cigar
'5S10H'
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_left(9).cigar == c.cigar
True
>>> c = Cigar('1S1H1S5H1S5M10H')
>>> c.mask_right(9).cigar == c.cigar
True
>>> c.mask_right(11).cigar
'1S1H1S5H1S4M1S10H'
```

%prep
%autosetup -n cigar-0.1.3

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-cigar -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.3-1
- Package Spec generated