%global _empty_manifest_terminate_build 0
Name:		python-cylinter
Version:	0.0.45
Release:	1
Summary:	CyLinter
License:	MIT License
URL:		https://github.com/labsyspharm/cylinter
Source0:	https://mirrors.aliyun.com/pypi/web/packages/c0/d0/e80c883c25650e547ffcace71ca053506a113d37c2f9198046175115c646/cylinter-0.0.45.tar.gz
BuildArch:	noarch


%description

![](docs/assets/images/cylinter-logo.svg)

## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python](https://www.python.org) Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at the [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.

**Funding:** This work is supported by the following:

* *NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin*
* *NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs*
* *Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation*

**Instructions:** https://labsyspharm.github.io/cylinter/


%package -n python3-cylinter
Summary:	CyLinter
Provides:	python-cylinter
BuildRequires:	python3-devel
BuildRequires:	python3-setuptools
BuildRequires:	python3-pip
%description -n python3-cylinter

![](docs/assets/images/cylinter-logo.svg)

## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python](https://www.python.org) Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at the [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.

**Funding:** This work is supported by the following:

* *NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin*
* *NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs*
* *Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation*

**Instructions:** https://labsyspharm.github.io/cylinter/


%package help
Summary:	Development documents and examples for cylinter
Provides:	python3-cylinter-doc
%description help

![](docs/assets/images/cylinter-logo.svg)

## An Interactive Image Segmentation Filter for Multiplex Microscopy.

CyLinter is quality control software for identifying and removing cell segmentation instances corrupted by optical and/or image-processing artifacts in multiplex microscopy images. The tool is user-guided and comprises a set of modular and extensible QC modules instantiated in a configurable [Python](https://www.python.org) Class object. Module results are cached to allow for dynamic restarts.

CyLinter development is led by [Greg Baker](https://github.com/gjbaker) at the [Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/), Harvard Medical School.

**Funding:** This work is supported by the following:

* *NCI grant U2C-CA233262: Pre-cancer Atlases of Cutaneous and Hematologic Origin*
* *NIH grant U54CA225088: Systems Pharmacology of Therapeutic and Adverse Responses to Immune Checkpoint and Small Molecule Drugs*
* *Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation*

**Instructions:** https://labsyspharm.github.io/cylinter/


%prep
%autosetup -n cylinter-0.0.45

%build
%py3_build

%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
	find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
	find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
	find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
	find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
	find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .

%files -n python3-cylinter -f filelist.lst
%dir %{python3_sitelib}/*

%files help -f doclist.lst
%{_docdir}/*

%changelog
* Thu Jun 08 2023 Python_Bot <Python_Bot@openeuler.org> - 0.0.45-1
- Package Spec generated