%global _empty_manifest_terminate_build 0
Name: python-primer3-py
Version: 2.0.0
Release: 1
Summary: Python bindings for Primer3
License: GPLv2
URL: https://github.com/libnano/primer3-py
Source0: https://mirrors.aliyun.com/pypi/web/packages/c8/00/0eef87544c6107381206935bf928172a324ea3b990bf57d735eca15a5118/primer3-py-2.0.0.tar.gz
%description
## primer3-py: simple oligo analysis and primer design
**Primer3-py** is a Python-abstracted API for the popular Primer3 library. The
intention is to provide a simple and reliable interface for automated oligo
analysis and design.
Routine oligo analysis is simple::
>>> import primer3
>>> primer3.calc_tm('GTAAAACGACGGCCAGT')
49.16808228911765
>>> primer3.calc_hairpin('CCCCCATCCGATCAGGGGG')
ThermoResult(structure_found=True, tm=34.15, dg=337.09, dh=-36300.00, ds=-118.13)
... and `fast` (**~1000X** faster than traditional subprocess wrappers)::
```bash
In [1]: import primer3
In [2]: import tests.wrapper
In [3]: %timeit primer3.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 4.74 us per loop
In [4]: %timeit test.wrappers.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 5.78 ms per loop
```
**Primer3-py** also includes bindings for the Primer3 `primer design engine`
if you'd prefer to use an established pipeline. The IO parameters mirror those
of the original Primer3.
**Please note that while we provide bindings, we do not provide support for
the Primer3 design engine. Please contact the Primer3 dev team with your
questions: https://github.com/primer3-org/primer3 **
A copy of the Primer3 2.6.1 design parameters manual can be found at:
[primer3 v2.6.1 manual](https://htmlpreview.github.io/?https://github.com/primer3-org/primer3/blob/v2.6.1/src/primer3_manual.htm)
For documentation of the bindings, see https://libnano.github.io/primer3-py
%package -n python3-primer3-py
Summary: Python bindings for Primer3
Provides: python-primer3-py
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
BuildRequires: python3-cffi
BuildRequires: gcc
BuildRequires: gdb
%description -n python3-primer3-py
## primer3-py: simple oligo analysis and primer design
**Primer3-py** is a Python-abstracted API for the popular Primer3 library. The
intention is to provide a simple and reliable interface for automated oligo
analysis and design.
Routine oligo analysis is simple::
>>> import primer3
>>> primer3.calc_tm('GTAAAACGACGGCCAGT')
49.16808228911765
>>> primer3.calc_hairpin('CCCCCATCCGATCAGGGGG')
ThermoResult(structure_found=True, tm=34.15, dg=337.09, dh=-36300.00, ds=-118.13)
... and `fast` (**~1000X** faster than traditional subprocess wrappers)::
```bash
In [1]: import primer3
In [2]: import tests.wrapper
In [3]: %timeit primer3.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 4.74 us per loop
In [4]: %timeit test.wrappers.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 5.78 ms per loop
```
**Primer3-py** also includes bindings for the Primer3 `primer design engine`
if you'd prefer to use an established pipeline. The IO parameters mirror those
of the original Primer3.
**Please note that while we provide bindings, we do not provide support for
the Primer3 design engine. Please contact the Primer3 dev team with your
questions: https://github.com/primer3-org/primer3 **
A copy of the Primer3 2.6.1 design parameters manual can be found at:
[primer3 v2.6.1 manual](https://htmlpreview.github.io/?https://github.com/primer3-org/primer3/blob/v2.6.1/src/primer3_manual.htm)
For documentation of the bindings, see https://libnano.github.io/primer3-py
%package help
Summary: Development documents and examples for primer3-py
Provides: python3-primer3-py-doc
%description help
## primer3-py: simple oligo analysis and primer design
**Primer3-py** is a Python-abstracted API for the popular Primer3 library. The
intention is to provide a simple and reliable interface for automated oligo
analysis and design.
Routine oligo analysis is simple::
>>> import primer3
>>> primer3.calc_tm('GTAAAACGACGGCCAGT')
49.16808228911765
>>> primer3.calc_hairpin('CCCCCATCCGATCAGGGGG')
ThermoResult(structure_found=True, tm=34.15, dg=337.09, dh=-36300.00, ds=-118.13)
... and `fast` (**~1000X** faster than traditional subprocess wrappers)::
```bash
In [1]: import primer3
In [2]: import tests.wrapper
In [3]: %timeit primer3.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 4.74 us per loop
In [4]: %timeit test.wrappers.calc_tm('GTAAAACGACGGCCAGT')
100000 loops, best of 3: 5.78 ms per loop
```
**Primer3-py** also includes bindings for the Primer3 `primer design engine`
if you'd prefer to use an established pipeline. The IO parameters mirror those
of the original Primer3.
**Please note that while we provide bindings, we do not provide support for
the Primer3 design engine. Please contact the Primer3 dev team with your
questions: https://github.com/primer3-org/primer3 **
A copy of the Primer3 2.6.1 design parameters manual can be found at:
[primer3 v2.6.1 manual](https://htmlpreview.github.io/?https://github.com/primer3-org/primer3/blob/v2.6.1/src/primer3_manual.htm)
For documentation of the bindings, see https://libnano.github.io/primer3-py
%prep
%autosetup -n primer3-py-2.0.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-primer3-py -f filelist.lst
%dir %{python3_sitearch}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Thu Jun 08 2023 Python_Bot - 2.0.0-1
- Package Spec generated