Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686457509.638571/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-RILseq-0.82-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686457509.638571/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-RILseq-0.82-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1686457509.638571/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-rilseq.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kJZRJx + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf RILseq-0.82 + /usr/bin/gzip -dc /builddir/build/SOURCES/RILseq-0.82.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd RILseq-0.82 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.P9ZN8i + umask 022 + cd /builddir/build/BUILD + cd RILseq-0.82 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/RILseq copying RILseq/dinuc_shuffle.py -> build/lib/RILseq copying RILseq/ecocyc_parser.py -> build/lib/RILseq copying RILseq/parse_ecocyc_TUs.py -> build/lib/RILseq copying RILseq/__init__.py -> build/lib/RILseq copying RILseq/RNAup_tar_pred.py -> build/lib/RILseq running egg_info writing RILseq.egg-info/PKG-INFO writing dependency_links to RILseq.egg-info/dependency_links.txt writing requirements to RILseq.egg-info/requires.txt writing top-level names to RILseq.egg-info/top_level.txt reading manifest file 'RILseq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ecocyc-logo.jpg' writing manifest file 'RILseq.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.9 copying and adjusting bin/map_chimeric_fragments.py -> build/scripts-3.9 copying and adjusting bin/map_single_fragments.py -> build/scripts-3.9 copying and adjusting bin/RILseq_significant_regions.py -> build/scripts-3.9 copying and adjusting bin/generate_genes_gff.py -> build/scripts-3.9 copying and adjusting bin/generate_transcripts_gff.py -> build/scripts-3.9 copying and adjusting bin/plot_circos_plot.py -> build/scripts-3.9 copying and adjusting bin/generate_BED_file_of_endpoints.py -> build/scripts-3.9 copying and adjusting bin/count_chimeric_reads_per_gene.py -> build/scripts-3.9 copying and adjusting bin/get_sequences_for_meme.py -> build/scripts-3.9 copying and adjusting bin/plot_regions_interactions.py -> build/scripts-3.9 changing mode of build/scripts-3.9/map_chimeric_fragments.py from 644 to 755 changing mode of build/scripts-3.9/map_single_fragments.py from 644 to 755 changing mode of build/scripts-3.9/RILseq_significant_regions.py from 644 to 755 changing mode of build/scripts-3.9/generate_genes_gff.py from 644 to 755 changing mode of build/scripts-3.9/generate_transcripts_gff.py from 644 to 755 changing mode of build/scripts-3.9/plot_circos_plot.py from 644 to 755 changing mode of build/scripts-3.9/generate_BED_file_of_endpoints.py from 644 to 755 changing mode of build/scripts-3.9/count_chimeric_reads_per_gene.py from 644 to 755 changing mode of build/scripts-3.9/get_sequences_for_meme.py from 644 to 755 changing mode of build/scripts-3.9/plot_regions_interactions.py from 644 to 755 + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BfxVpM + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 + cd RILseq-0.82 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq copying build/lib/RILseq/dinuc_shuffle.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq copying build/lib/RILseq/ecocyc_parser.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq copying build/lib/RILseq/parse_ecocyc_TUs.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq copying build/lib/RILseq/__init__.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq copying build/lib/RILseq/RNAup_tar_pred.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq byte-compiling /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq/dinuc_shuffle.py to dinuc_shuffle.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq/ecocyc_parser.py to ecocyc_parser.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq/parse_ecocyc_TUs.py to parse_ecocyc_TUs.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq/__init__.py to __init__.cpython-39.pyc /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? byte-compiling /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq/RNAup_tar_pred.py to RNAup_tar_pred.cpython-39.pyc writing byte-compilation script '/tmp/tmpn6ro9m5y.py' /usr/bin/python3 /tmp/tmpn6ro9m5y.py /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? removing /tmp/tmpn6ro9m5y.py running install_egg_info running egg_info writing RILseq.egg-info/PKG-INFO writing dependency_links to RILseq.egg-info/dependency_links.txt writing requirements to RILseq.egg-info/requires.txt writing top-level names to RILseq.egg-info/top_level.txt reading manifest file 'RILseq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'ecocyc-logo.jpg' writing manifest file 'RILseq.egg-info/SOURCES.txt' Copying RILseq.egg-info to /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9/site-packages/RILseq-0.82-py3.9.egg-info running install_scripts creating /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/generate_BED_file_of_endpoints.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/count_chimeric_reads_per_gene.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/plot_circos_plot.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/generate_transcripts_gff.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/map_single_fragments.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/plot_regions_interactions.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/get_sequences_for_meme.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/generate_genes_gff.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/map_chimeric_fragments.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin copying build/scripts-3.9/RILseq_significant_regions.py -> /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/generate_BED_file_of_endpoints.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/count_chimeric_reads_per_gene.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/plot_circos_plot.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/generate_transcripts_gff.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/map_single_fragments.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/plot_regions_interactions.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/get_sequences_for_meme.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/generate_genes_gff.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/map_chimeric_fragments.py to 755 changing mode of /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/bin/RILseq_significant_regions.py to 755 + install -d -m755 /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64//usr/share/doc/python-RILseq + '[' -d doc ']' ~/build/BUILDROOT/python-RILseq-0.82-1.x86_64 ~/build/BUILD/RILseq-0.82 + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + pushd /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' ~/build/BUILD/RILseq-0.82 + popd + mv /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/filelist.lst . + mv /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 0.82-1 --unique-debug-suffix -0.82-1.x86_64 --unique-debug-src-base python-RILseq-0.82-1.x86_64 -S debugsourcefiles.list /builddir/build/BUILD/RILseq-0.82 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/RILseq/__init__.py:1148: SyntaxWarning: "is not" with a literal. Did you mean "!="? + /usr/lib/rpm/brp-python-hardlink Processing files: python3-RILseq-0.82-1.noarch Provides: python-RILseq python3-RILseq = 0.82-1 python3.9dist(rilseq) = 0.82 python3dist(rilseq) = 0.82 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 python3.9dist(biopython) = 1.76 python3.9dist(numpy) python3.9dist(pysam) >= 0.14.1 python3.9dist(scipy) Processing files: python-RILseq-help-0.82-1.noarch warning: Empty %files file /builddir/build/BUILD/RILseq-0.82/doclist.lst Provides: python-RILseq-help = 0.82-1 python3-RILseq-doc Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 Wrote: /builddir/build/RPMS/python-RILseq-help-0.82-1.noarch.rpm Wrote: /builddir/build/RPMS/python3-RILseq-0.82-1.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.IEsUZM + umask 022 + cd /builddir/build/BUILD + cd RILseq-0.82 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-RILseq-0.82-1.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0