%global _empty_manifest_terminate_build 0 Name: python-FlowIO Version: 1.2.1 Release: 1 Summary: FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files License: BSD URL: https://github.com/whitews/flowio Source0: https://mirrors.aliyun.com/pypi/web/packages/c8/5c/345d2d4cb7fea50b8cdf64468ffbb5425315455dd20e48e8512b4ecd3e05/FlowIO-1.2.1.tar.gz BuildArch: noarch %description # FlowIO [![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) [![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) [![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) [![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) [![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) [![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) [![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) ## Overview FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files, with zero external dependencies and is compatible with Python 3.7+. FlowIO retrieves event data exactly as it is encoded in the FCS file: as a 1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes are also available for commonly accessed properties. For example, the channel count can be used to easily convert the event data to a multi-column NumPy array: ``` import flowio import numpy fcs_data = flowio.FlowData('example.fcs') npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) ``` For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, see the related [FlowKit](https://github.com/whitews/FlowKit) project. ## Installation The recommended way to install FlowIO is via the `pip` command: ``` pip install flowio ``` Or, if you prefer, you can install from the GitHub source: ``` git clone https://github.com/whitews/flowio cd flowio python setup.py install ``` ## Documentation The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). ### Changelogs [Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) %package -n python3-FlowIO Summary: FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files Provides: python-FlowIO BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-FlowIO # FlowIO [![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) [![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) [![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) [![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) [![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) [![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) [![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) ## Overview FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files, with zero external dependencies and is compatible with Python 3.7+. FlowIO retrieves event data exactly as it is encoded in the FCS file: as a 1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes are also available for commonly accessed properties. For example, the channel count can be used to easily convert the event data to a multi-column NumPy array: ``` import flowio import numpy fcs_data = flowio.FlowData('example.fcs') npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) ``` For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, see the related [FlowKit](https://github.com/whitews/FlowKit) project. ## Installation The recommended way to install FlowIO is via the `pip` command: ``` pip install flowio ``` Or, if you prefer, you can install from the GitHub source: ``` git clone https://github.com/whitews/flowio cd flowio python setup.py install ``` ## Documentation The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). ### Changelogs [Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) %package help Summary: Development documents and examples for FlowIO Provides: python3-FlowIO-doc %description help # FlowIO [![PyPI license](https://img.shields.io/pypi/l/flowio.svg?colorB=dodgerblue)](https://pypi.python.org/pypi/flowio/) [![PyPI pyversions](https://img.shields.io/pypi/pyversions/flowio.svg)](https://pypi.python.org/pypi/flowio/) [![PyPI version](https://img.shields.io/pypi/v/flowio.svg?colorB=blue)](https://pypi.python.org/pypi/flowio/) [![DOI](https://zenodo.org/badge/14634514.svg)](https://zenodo.org/badge/latestdoi/14634514) [![Build & test (master)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_master.yml) [![Build & test (develop)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml/badge.svg)](https://github.com/whitews/FlowIO/actions/workflows/tests_develop.yml) [![Coverage](https://codecov.io/gh/whitews/FlowIO/branch/master/graph/badge.svg)](https://codecov.io/gh/whitews/flowio) [![Documentation Status](https://readthedocs.org/projects/flowio/badge/?version=latest)](https://flowio.readthedocs.io/en/latest/?badge=latest) ## Overview FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files, with zero external dependencies and is compatible with Python 3.7+. FlowIO retrieves event data exactly as it is encoded in the FCS file: as a 1-dimensional list without separating the events into channels or performing any preprocessing (e.g. applying gain). Metadata stored in the FCS file is available as a dictionary via the 'text' attribute. Basic attributes are also available for commonly accessed properties. For example, the channel count can be used to easily convert the event data to a multi-column NumPy array: ``` import flowio import numpy fcs_data = flowio.FlowData('example.fcs') npy_data = numpy.reshape(fcs_data.events, (-1, fcs_data.channel_count)) ``` For higher level interaction with flow cytometry data, including GatingML and FlowJo 10 support, see the related [FlowKit](https://github.com/whitews/FlowKit) project. ## Installation The recommended way to install FlowIO is via the `pip` command: ``` pip install flowio ``` Or, if you prefer, you can install from the GitHub source: ``` git clone https://github.com/whitews/flowio cd flowio python setup.py install ``` ## Documentation The FlowIO API documentation is available [on ReadTheDocs here](https://flowio.readthedocs.io/en/latest/?badge=latest). If you have any questions about FlowIO or find any bugs [please submit an issue to the GitHub repository here](https://github.com/whitews/FlowIO/issues/new/). ### Changelogs [Changelogs for versions are available here](https://github.com/whitews/FlowIO/releases) %prep %autosetup -n FlowIO-1.2.1 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-FlowIO -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Thu Jun 08 2023 Python_Bot - 1.2.1-1 - Package Spec generated