%global _empty_manifest_terminate_build 0 Name: python-biobb-analysis Version: 4.0.1 Release: 1 Summary: Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. License: Apache Software License URL: https://github.com/bioexcel/biobb_analysis Source0: https://mirrors.aliyun.com/pypi/web/packages/70/ae/96a066c776608f54ec7b4c74796415be392e195d9dc6718278439c7c5375/biobb_analysis-4.0.1.tar.gz BuildArch: noarch Requires: python3-biobb-common %description [![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/) [![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/) [![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags) [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/) [![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM) [![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4) [![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas) [![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html) [![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/) [![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/) [![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master) [![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/) # biobb_analysis ### Introduction Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/). ### Version v4.0.1 2023.1 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY. * Installation: pip install "biobb_analysis>=4.0.1" * Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_analysis>=4.0.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 Using SINGULARITY: **MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system. * Installation: singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: singularity exec biobb_analysis.sif The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %package -n python3-biobb-analysis Summary: Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. Provides: python-biobb-analysis BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-pip %description -n python3-biobb-analysis [![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/) [![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/) [![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags) [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/) [![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM) [![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4) [![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas) [![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html) [![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/) [![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/) [![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master) [![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/) # biobb_analysis ### Introduction Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/). ### Version v4.0.1 2023.1 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY. * Installation: pip install "biobb_analysis>=4.0.1" * Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_analysis>=4.0.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 Using SINGULARITY: **MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system. * Installation: singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: singularity exec biobb_analysis.sif The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %package help Summary: Development documents and examples for biobb-analysis Provides: python3-biobb-analysis-doc %description help [![](https://img.shields.io/github/v/tag/bioexcel/biobb_analysis?label=Version)](https://GitHub.com/bioexcel/biobb_analysis/tags/) [![](https://img.shields.io/pypi/v/biobb-analysis.svg?label=Pypi)](https://pypi.python.org/pypi/biobb-analysis/) [![](https://img.shields.io/conda/vn/bioconda/biobb_analysis?label=Conda)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/conda/dn/bioconda/biobb_analysis?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_analysis) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_analysis?tab=tags) [![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://img.shields.io/pypi/pyversions/biobb-analysis.svg?label=Python%20Versions)](https://pypi.org/project/biobb-analysis/) [![](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) [![](https://img.shields.io/badge/Open%20Source%3f-Yes!-blue)](https://github.com/bioexcel/biobb_analysis) [![](https://readthedocs.org/projects/biobb-analysis/badge/?version=latest&label=Docs)](https://biobb-analysis.readthedocs.io/en/latest/?badge=latest) [![](https://img.shields.io/website?down_message=Offline&label=Biobb%20Website&up_message=Online&url=https%3A%2F%2Fmmb.irbbarcelona.org%2Fbiobb%2F)](https://mmb.irbbarcelona.org/biobb/) [![](https://img.shields.io/badge/Youtube-tutorial-blue?logo=youtube&logoColor=red)](https://www.youtube.com/watch?v=ou1DOGNs0xM) [![](https://zenodo.org/badge/DOI/10.1038/s41597-019-0177-4.svg)](https://doi.org/10.1038/s41597-019-0177-4) [![](https://img.shields.io/endpoint?color=brightgreen&url=https%3A%2F%2Fapi.juleskreuer.eu%2Fcitation-badge.php%3Fshield%26doi%3D10.1038%2Fs41597-019-0177-4)](https://www.nature.com/articles/s41597-019-0177-4#citeas) [![](https://docs.bioexcel.eu/biobb_analysis/junit/testsbadge.svg)](https://docs.bioexcel.eu/biobb_analysis/junit/report.html) [![](https://docs.bioexcel.eu/biobb_analysis/coverage/coveragebadge.svg)](https://docs.bioexcel.eu/biobb_analysis/coverage/) [![](https://docs.bioexcel.eu/biobb_analysis/flake8/flake8badge.svg)](https://docs.bioexcel.eu/biobb_analysis/flake8/) [![](https://img.shields.io/github/last-commit/bioexcel/biobb_analysis?label=Last%20Commit)](https://github.com/bioexcel/biobb_analysis/commits/master) [![](https://img.shields.io/github/issues/bioexcel/biobb_analysis.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_analysis/issues/) # biobb_analysis ### Introduction Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/). ### Version v4.0.1 2023.1 ### Installation Using PIP: > **Important:** PIP only installs the package. All the dependencies must be installed separately. To perform a complete installation, please use ANACONDA, DOCKER or SINGULARITY. * Installation: pip install "biobb_analysis>=4.0.1" * Usage: [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) Using ANACONDA: * Installation: conda install -c bioconda "biobb_analysis>=4.0.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-analysis.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html) Using DOCKER: * Installation: docker pull quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: docker run quay.io/biocontainers/biobb_analysis:4.0.1--pyhdfd78af_1 Using SINGULARITY: **MacOS users**: it's strongly recommended to avoid Singularity and use **Docker** as containerization system. * Installation: singularity pull --name biobb_analysis.sif https://depot.galaxyproject.org/singularity/biobb_analysis:4.0.1--pyhdfd78af_1 * Usage: singularity exec biobb_analysis.sif The command list and specification can be found at the [Command Line documentation](https://biobb-analysis.readthedocs.io/en/latest/command_line.html). ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). * (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. ![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel") %prep %autosetup -n biobb_analysis-4.0.1 %build %py3_build %install %py3_install install -d -m755 %{buildroot}/%{_pkgdocdir} if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi pushd %{buildroot} if [ -d usr/lib ]; then find usr/lib -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/lib64 ]; then find usr/lib64 -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/bin ]; then find usr/bin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi if [ -d usr/sbin ]; then find usr/sbin -type f -printf "\"/%h/%f\"\n" >> filelist.lst fi touch doclist.lst if [ -d usr/share/man ]; then find usr/share/man -type f -printf "\"/%h/%f.gz\"\n" >> doclist.lst fi popd mv %{buildroot}/filelist.lst . mv %{buildroot}/doclist.lst . %files -n python3-biobb-analysis -f filelist.lst %dir %{python3_sitelib}/* %files help -f doclist.lst %{_docdir}/* %changelog * Fri Jun 09 2023 Python_Bot - 4.0.1-1 - Package Spec generated