Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687299489.401337/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-biobb-structure-checking-3.13.0-1.src.rpm Child return code was: 0 Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687299489.401337/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/python-biobb-structure-checking-3.13.0-1.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'], chrootPath='/var/lib/mock/openeuler-22.03_LTS_SP1-x86_64-1687299489.401337/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=True) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-biobb-structure-checking.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False /etc/profile.d/system-info.sh: line 55: ps: command not found Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.GI6Kfm + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf biobb_structure_checking-3.13.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/biobb_structure_checking-3.13.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd biobb_structure_checking-3.13.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.avqwoo + umask 022 + cd /builddir/build/BUILD + cd biobb_structure_checking-3.13.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib creating build/lib/biobb_structure_checking copying biobb_structure_checking/mutation_manager.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/__init__.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/check_structure.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/structure_checking.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/structure_manager.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/constants.py -> build/lib/biobb_structure_checking copying biobb_structure_checking/modeller_manager.py -> build/lib/biobb_structure_checking creating build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/__init__.py -> build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/json_writer.py -> build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/bare_builder.py -> build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/PDBIO_extended.py -> build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/mmb_server.py -> build/lib/biobb_structure_checking/io copying biobb_structure_checking/io/param_input.py -> build/lib/biobb_structure_checking/io creating build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/cistransbck.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/water.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/__init__.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/mutateside.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/sequences.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/fixside.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/models.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/chiral.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/ligands.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/backbone.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/metals.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/chains.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/getss.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/amide.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/inscodes.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/chiral_bck.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/clashes.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/altloc.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/add_hydrogen.py -> build/lib/biobb_structure_checking/commands copying biobb_structure_checking/commands/rem_hydrogen.py -> build/lib/biobb_structure_checking/commands creating build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/chainsdata.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/modelsdata.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/residue_set.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/__init__.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/utils.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/structuredata.py -> build/lib/biobb_structure_checking/modelling copying biobb_structure_checking/modelling/sequencedata.py -> build/lib/biobb_structure_checking/modelling creating build/lib/biobb_structure_checking/libs copying biobb_structure_checking/libs/residue_lib_manager.py -> build/lib/biobb_structure_checking/libs copying biobb_structure_checking/libs/__init__.py -> build/lib/biobb_structure_checking/libs copying biobb_structure_checking/libs/data_lib_manager.py -> build/lib/biobb_structure_checking/libs running egg_info writing biobb_structure_checking.egg-info/PKG-INFO writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt writing entry points to biobb_structure_checking.egg-info/entry_points.txt writing requirements to biobb_structure_checking.egg-info/requires.txt writing top-level names to biobb_structure_checking.egg-info/top_level.txt reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' creating build/lib/biobb_structure_checking/dat copying biobb_structure_checking/dat/ADT_prm.json -> build/lib/biobb_structure_checking/dat copying biobb_structure_checking/dat/CMIP_prm.json -> build/lib/biobb_structure_checking/dat copying biobb_structure_checking/dat/all_residues.in -> build/lib/biobb_structure_checking/dat copying biobb_structure_checking/dat/commands.hlp -> build/lib/biobb_structure_checking/dat copying biobb_structure_checking/dat/data_lib.json -> build/lib/biobb_structure_checking/dat + sleep 1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yhuLAU + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 ++ dirname /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 + cd biobb_structure_checking-3.13.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/generic-hardened-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/generic-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 running install /usr/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9 creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking copying build/lib/biobb_structure_checking/mutation_manager.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking copying build/lib/biobb_structure_checking/__init__.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking copying build/lib/biobb_structure_checking/check_structure.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/__init__.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/json_writer.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/bare_builder.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/PDBIO_extended.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/mmb_server.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/io/param_input.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io copying build/lib/biobb_structure_checking/structure_checking.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/cistransbck.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/water.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/__init__.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/mutateside.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/sequences.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/fixside.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/models.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/chiral.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/ligands.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/backbone.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/metals.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/chains.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/getss.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/amide.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/inscodes.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/chiral_bck.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/clashes.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/altloc.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/add_hydrogen.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands copying build/lib/biobb_structure_checking/commands/rem_hydrogen.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat copying build/lib/biobb_structure_checking/dat/commands.hlp -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat copying build/lib/biobb_structure_checking/dat/all_residues.in -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat copying build/lib/biobb_structure_checking/dat/data_lib.json -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat copying build/lib/biobb_structure_checking/dat/CMIP_prm.json -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat copying build/lib/biobb_structure_checking/dat/ADT_prm.json -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/dat creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/chainsdata.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/modelsdata.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/residue_set.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/__init__.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/utils.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/structuredata.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling copying build/lib/biobb_structure_checking/modelling/sequencedata.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling creating /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs copying build/lib/biobb_structure_checking/libs/residue_lib_manager.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs copying build/lib/biobb_structure_checking/libs/__init__.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs copying build/lib/biobb_structure_checking/libs/data_lib_manager.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs copying build/lib/biobb_structure_checking/structure_manager.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking copying build/lib/biobb_structure_checking/constants.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking copying build/lib/biobb_structure_checking/modeller_manager.py -> /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/mutation_manager.py to mutation_manager.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/check_structure.py to check_structure.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/json_writer.py to json_writer.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/bare_builder.py to bare_builder.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/PDBIO_extended.py to PDBIO_extended.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/mmb_server.py to mmb_server.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/io/param_input.py to param_input.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/structure_checking.py to structure_checking.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/cistransbck.py to cistransbck.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/water.py to water.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/mutateside.py to mutateside.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/sequences.py to sequences.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/fixside.py to fixside.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/models.py to models.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/chiral.py to chiral.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/ligands.py to ligands.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/backbone.py to backbone.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/metals.py to metals.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/chains.py to chains.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/getss.py to getss.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/amide.py to amide.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/inscodes.py to inscodes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/chiral_bck.py to chiral_bck.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/clashes.py to clashes.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/altloc.py to altloc.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/add_hydrogen.py to add_hydrogen.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/commands/rem_hydrogen.py to rem_hydrogen.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/chainsdata.py to chainsdata.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/modelsdata.py to modelsdata.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/residue_set.py to residue_set.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/utils.py to utils.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/structuredata.py to structuredata.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modelling/sequencedata.py to sequencedata.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs/residue_lib_manager.py to residue_lib_manager.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs/__init__.py to __init__.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/libs/data_lib_manager.py to data_lib_manager.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/structure_manager.py to structure_manager.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/constants.py to constants.cpython-39.pyc byte-compiling /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking/modeller_manager.py to modeller_manager.cpython-39.pyc writing byte-compilation script '/tmp/tmpvwiussmi.py' /usr/bin/python3 /tmp/tmpvwiussmi.py removing /tmp/tmpvwiussmi.py running install_egg_info running egg_info writing biobb_structure_checking.egg-info/PKG-INFO writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt writing entry points to biobb_structure_checking.egg-info/entry_points.txt writing requirements to biobb_structure_checking.egg-info/requires.txt writing top-level names to biobb_structure_checking.egg-info/top_level.txt reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' Copying biobb_structure_checking.egg-info to /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9/site-packages/biobb_structure_checking-3.13.0-py3.9.egg-info running install_scripts Installing check_structure script to /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/bin + install -d -m755 /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64//usr/share/doc/python-biobb-structure-checking + '[' -d doc ']' ~/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 ~/build/BUILD/biobb_structure_checking-3.13.0 + '[' -d docs ']' + '[' -d example ']' + '[' -d examples ']' + pushd /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 + '[' -d usr/lib ']' + find usr/lib -type f -printf '"/%h/%f"\n' + '[' -d usr/lib64 ']' + '[' -d usr/bin ']' + find usr/bin -type f -printf '"/%h/%f"\n' + '[' -d usr/sbin ']' + touch doclist.lst + '[' -d usr/share/man ']' + popd ~/build/BUILD/biobb_structure_checking-3.13.0 + mv /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/filelist.lst . + mv /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/doclist.lst . + /usr/bin/find-debuginfo -j4 --strict-build-id -i --build-id-seed 3.13.0-1 --unique-debug-suffix -3.13.0-1.x86_64 --unique-debug-src-base python-biobb-structure-checking-3.13.0-1.x86_64 -S debugsourcefiles.list /builddir/build/BUILD/biobb_structure_checking-3.13.0 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 Bytecompiling .py files below /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink Processing files: python3-biobb-structure-checking-3.13.0-1.noarch Provides: python-biobb-structure-checking python3-biobb-structure-checking = 3.13.0-1 python3.9dist(biobb-structure-checking) = 3.13 python3dist(biobb-structure-checking) = 3.13 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.9 python3.9dist(biopython) python3.9dist(numpy) python3.9dist(psutil) python3.9dist(setuptools) Processing files: python-biobb-structure-checking-help-3.13.0-1.noarch warning: Empty %files file /builddir/build/BUILD/biobb_structure_checking-3.13.0/doclist.lst Provides: python-biobb-structure-checking-help = 3.13.0-1 python3-biobb-structure-checking-doc Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 Wrote: /builddir/build/RPMS/python-biobb-structure-checking-help-3.13.0-1.noarch.rpm Wrote: /builddir/build/RPMS/python3-biobb-structure-checking-3.13.0-1.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.jSt5zO + umask 022 + cd /builddir/build/BUILD + cd biobb_structure_checking-3.13.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-biobb-structure-checking-3.13.0-1.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0