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authorCoprDistGit <infra@openeuler.org>2023-05-31 08:06:33 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-31 08:06:33 +0000
commit31e8f0159510b5421dbcb02a59a36092506dd03d (patch)
tree50322c31dc3998e6dcf8f483fc308cda27ee7af6
parent23fda4987a5f8c118a653dd29ea37ff6222f57ca (diff)
automatic import of python-biomass
-rw-r--r--.gitignore1
-rw-r--r--python-biomass.spec240
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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--- a/.gitignore
+++ b/.gitignore
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+/biomass-0.12.0.tar.gz
diff --git a/python-biomass.spec b/python-biomass.spec
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--- /dev/null
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+%global _empty_manifest_terminate_build 0
+Name: python-biomass
+Version: 0.12.0
+Release: 1
+Summary: A Python Framework for Modeling and Analysis of Signaling Systems
+License: Apache-2.0
+URL: https://pypi.org/project/biomass/
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/4f/07/1dc5ae8a39bba186d1b272f2432e0e08b6ee8b58950995961609334556c0/biomass-0.12.0.tar.gz
+BuildArch: noarch
+
+Requires: python3-matplotlib
+Requires: python3-numba
+Requires: python3-numpy
+Requires: python3-pandas
+Requires: python3-scipy
+Requires: python3-seaborn
+Requires: python3-tqdm
+Requires: python3-black
+Requires: python3-flake8
+Requires: python3-isort
+Requires: python3-pre-commit
+Requires: python3-pytest
+Requires: python3-sphinx
+Requires: python3-sphinx-rtd-theme
+Requires: python3-sphinx-autodoc-typehints
+Requires: python3-sphinxcontrib-bibtex
+Requires: python3-pygraphviz
+Requires: python3-pyvis
+
+%description
+<br>
+<p align="center">
+ <a href="https://biomass-core.readthedocs.io/en/latest">
+ <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400">
+ </a>
+</p>
+
+[![PyPI version](https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![Actions Status](https://github.com/biomass-dev/biomass/workflows/Tests/badge.svg)](https://github.com/biomass-dev/biomass/actions)
+[![Documentation Status](https://img.shields.io/readthedocs/biomass-core/latest.svg?logo=read%20the%20docs&logoColor=white&&label=Docs&version=latest)](https://biomass-core.readthedocs.io/en/latest/?badge=latest)
+[![License](https://img.shields.io/badge/License-Apache%202.0-green.svg?logo=apache)](https://opensource.org/licenses/Apache-2.0)
+[![Downloads](https://pepy.tech/badge/biomass)](https://pepy.tech/project/biomass)
+[![PyPI pyversions](https://img.shields.io/pypi/pyversions/biomass.svg?logo=Python&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/biomass-dev/biomass/master.svg)](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+[![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
+[![Cancers Paper](https://img.shields.io/badge/DOI-10.3390%2Fcancers12102878-blue)](https://doi.org/10.3390/cancers12102878)
+
+_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python.
+
+- **Documentation:** https://biomass-core.rtfd.io
+- **Source code:** https://github.com/biomass-dev/biomass
+- **Bug reports:** https://github.com/biomass-dev/biomass/issues
+- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html
+
+It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
+
+## Installation
+
+The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass).
+
+```shell
+$ pip install biomass
+```
+
+BioMASS supports Python 3.8 or newer.
+
+## References
+
+- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878
+
+- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
+
+## Author
+
+[Hiroaki Imoto](https://github.com/himoto)
+
+## License
+
+[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE)
+
+
+%package -n python3-biomass
+Summary: A Python Framework for Modeling and Analysis of Signaling Systems
+Provides: python-biomass
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-biomass
+<br>
+<p align="center">
+ <a href="https://biomass-core.readthedocs.io/en/latest">
+ <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400">
+ </a>
+</p>
+
+[![PyPI version](https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![Actions Status](https://github.com/biomass-dev/biomass/workflows/Tests/badge.svg)](https://github.com/biomass-dev/biomass/actions)
+[![Documentation Status](https://img.shields.io/readthedocs/biomass-core/latest.svg?logo=read%20the%20docs&logoColor=white&&label=Docs&version=latest)](https://biomass-core.readthedocs.io/en/latest/?badge=latest)
+[![License](https://img.shields.io/badge/License-Apache%202.0-green.svg?logo=apache)](https://opensource.org/licenses/Apache-2.0)
+[![Downloads](https://pepy.tech/badge/biomass)](https://pepy.tech/project/biomass)
+[![PyPI pyversions](https://img.shields.io/pypi/pyversions/biomass.svg?logo=Python&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/biomass-dev/biomass/master.svg)](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+[![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
+[![Cancers Paper](https://img.shields.io/badge/DOI-10.3390%2Fcancers12102878-blue)](https://doi.org/10.3390/cancers12102878)
+
+_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python.
+
+- **Documentation:** https://biomass-core.rtfd.io
+- **Source code:** https://github.com/biomass-dev/biomass
+- **Bug reports:** https://github.com/biomass-dev/biomass/issues
+- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html
+
+It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
+
+## Installation
+
+The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass).
+
+```shell
+$ pip install biomass
+```
+
+BioMASS supports Python 3.8 or newer.
+
+## References
+
+- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878
+
+- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
+
+## Author
+
+[Hiroaki Imoto](https://github.com/himoto)
+
+## License
+
+[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE)
+
+
+%package help
+Summary: Development documents and examples for biomass
+Provides: python3-biomass-doc
+%description help
+<br>
+<p align="center">
+ <a href="https://biomass-core.readthedocs.io/en/latest">
+ <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400">
+ </a>
+</p>
+
+[![PyPI version](https://img.shields.io/pypi/v/biomass.svg?logo=PyPI&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![Actions Status](https://github.com/biomass-dev/biomass/workflows/Tests/badge.svg)](https://github.com/biomass-dev/biomass/actions)
+[![Documentation Status](https://img.shields.io/readthedocs/biomass-core/latest.svg?logo=read%20the%20docs&logoColor=white&&label=Docs&version=latest)](https://biomass-core.readthedocs.io/en/latest/?badge=latest)
+[![License](https://img.shields.io/badge/License-Apache%202.0-green.svg?logo=apache)](https://opensource.org/licenses/Apache-2.0)
+[![Downloads](https://pepy.tech/badge/biomass)](https://pepy.tech/project/biomass)
+[![PyPI pyversions](https://img.shields.io/pypi/pyversions/biomass.svg?logo=Python&logoColor=white)](https://pypi.python.org/pypi/biomass)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/biomass-dev/biomass/master.svg)](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+[![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
+[![Cancers Paper](https://img.shields.io/badge/DOI-10.3390%2Fcancers12102878-blue)](https://doi.org/10.3390/cancers12102878)
+
+_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python.
+
+- **Documentation:** https://biomass-core.rtfd.io
+- **Source code:** https://github.com/biomass-dev/biomass
+- **Bug reports:** https://github.com/biomass-dev/biomass/issues
+- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html
+
+It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
+
+## Installation
+
+The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass).
+
+```shell
+$ pip install biomass
+```
+
+BioMASS supports Python 3.8 or newer.
+
+## References
+
+- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878
+
+- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
+
+## Author
+
+[Hiroaki Imoto](https://github.com/himoto)
+
+## License
+
+[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE)
+
+
+%prep
+%autosetup -n biomass-0.12.0
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-biomass -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 0.12.0-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..58537e7
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+a0e5e1b53ca52f42d6fbcc0ee2a40483 biomass-0.12.0.tar.gz