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author | CoprDistGit <infra@openeuler.org> | 2023-05-31 08:06:33 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-05-31 08:06:33 +0000 |
commit | 31e8f0159510b5421dbcb02a59a36092506dd03d (patch) | |
tree | 50322c31dc3998e6dcf8f483fc308cda27ee7af6 | |
parent | 23fda4987a5f8c118a653dd29ea37ff6222f57ca (diff) |
automatic import of python-biomass
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-biomass.spec | 240 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 242 insertions, 0 deletions
@@ -0,0 +1 @@ +/biomass-0.12.0.tar.gz diff --git a/python-biomass.spec b/python-biomass.spec new file mode 100644 index 0000000..7abe8fa --- /dev/null +++ b/python-biomass.spec @@ -0,0 +1,240 @@ +%global _empty_manifest_terminate_build 0 +Name: python-biomass +Version: 0.12.0 +Release: 1 +Summary: A Python Framework for Modeling and Analysis of Signaling Systems +License: Apache-2.0 +URL: https://pypi.org/project/biomass/ +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/4f/07/1dc5ae8a39bba186d1b272f2432e0e08b6ee8b58950995961609334556c0/biomass-0.12.0.tar.gz +BuildArch: noarch + +Requires: python3-matplotlib +Requires: python3-numba +Requires: python3-numpy +Requires: python3-pandas +Requires: python3-scipy +Requires: python3-seaborn +Requires: python3-tqdm +Requires: python3-black +Requires: python3-flake8 +Requires: python3-isort +Requires: python3-pre-commit +Requires: python3-pytest +Requires: python3-sphinx +Requires: python3-sphinx-rtd-theme +Requires: python3-sphinx-autodoc-typehints +Requires: python3-sphinxcontrib-bibtex +Requires: python3-pygraphviz +Requires: python3-pyvis + +%description +<br> +<p align="center"> + <a href="https://biomass-core.readthedocs.io/en/latest"> + <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400"> + </a> +</p> + +[](https://pypi.python.org/pypi/biomass) +[](https://github.com/biomass-dev/biomass/actions) +[](https://biomass-core.readthedocs.io/en/latest/?badge=latest) +[](https://opensource.org/licenses/Apache-2.0) +[](https://pepy.tech/project/biomass) +[](https://pypi.python.org/pypi/biomass) +[](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master) +[](https://github.com/psf/black) +[](https://pycqa.github.io/isort/) +[](https://doi.org/10.3390/cancers12102878) + +_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python. + +- **Documentation:** https://biomass-core.rtfd.io +- **Source code:** https://github.com/biomass-dev/biomass +- **Bug reports:** https://github.com/biomass-dev/biomass/issues +- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html + +It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization. + +## Installation + +The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass). + +```shell +$ pip install biomass +``` + +BioMASS supports Python 3.8 or newer. + +## References + +- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878 + +- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944 + +## Author + +[Hiroaki Imoto](https://github.com/himoto) + +## License + +[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE) + + +%package -n python3-biomass +Summary: A Python Framework for Modeling and Analysis of Signaling Systems +Provides: python-biomass +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-biomass +<br> +<p align="center"> + <a href="https://biomass-core.readthedocs.io/en/latest"> + <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400"> + </a> +</p> + +[](https://pypi.python.org/pypi/biomass) +[](https://github.com/biomass-dev/biomass/actions) +[](https://biomass-core.readthedocs.io/en/latest/?badge=latest) +[](https://opensource.org/licenses/Apache-2.0) +[](https://pepy.tech/project/biomass) +[](https://pypi.python.org/pypi/biomass) +[](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master) +[](https://github.com/psf/black) +[](https://pycqa.github.io/isort/) +[](https://doi.org/10.3390/cancers12102878) + +_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python. + +- **Documentation:** https://biomass-core.rtfd.io +- **Source code:** https://github.com/biomass-dev/biomass +- **Bug reports:** https://github.com/biomass-dev/biomass/issues +- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html + +It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization. + +## Installation + +The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass). + +```shell +$ pip install biomass +``` + +BioMASS supports Python 3.8 or newer. + +## References + +- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878 + +- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944 + +## Author + +[Hiroaki Imoto](https://github.com/himoto) + +## License + +[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE) + + +%package help +Summary: Development documents and examples for biomass +Provides: python3-biomass-doc +%description help +<br> +<p align="center"> + <a href="https://biomass-core.readthedocs.io/en/latest"> + <img src="https://raw.githubusercontent.com/biomass-dev/biomass/master/docs/_static/img/biomass-logo.png" width="400"> + </a> +</p> + +[](https://pypi.python.org/pypi/biomass) +[](https://github.com/biomass-dev/biomass/actions) +[](https://biomass-core.readthedocs.io/en/latest/?badge=latest) +[](https://opensource.org/licenses/Apache-2.0) +[](https://pepy.tech/project/biomass) +[](https://pypi.python.org/pypi/biomass) +[](https://results.pre-commit.ci/latest/github/biomass-dev/biomass/master) +[](https://github.com/psf/black) +[](https://pycqa.github.io/isort/) +[](https://doi.org/10.3390/cancers12102878) + +_BioMASS_ is a computational framework for modeling and analysis of biological signaling systems in Python. + +- **Documentation:** https://biomass-core.rtfd.io +- **Source code:** https://github.com/biomass-dev/biomass +- **Bug reports:** https://github.com/biomass-dev/biomass/issues +- **Citing in your work:** https://biomass-core.rtfd.io/en/latest/citing.html + +It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization. + +## Installation + +The BioMASS library is available at the [Python Package Index (PyPI)](https://pypi.org/project/biomass). + +```shell +$ pip install biomass +``` + +BioMASS supports Python 3.8 or newer. + +## References + +- Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. _Cancers_ **12**, 2878 (2020). https://doi.org/10.3390/cancers12102878 + +- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. _iScience_ **25**, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944 + +## Author + +[Hiroaki Imoto](https://github.com/himoto) + +## License + +[Apache License 2.0](https://github.com/biomass-dev/biomass/blob/master/LICENSE) + + +%prep +%autosetup -n biomass-0.12.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-biomass -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 0.12.0-1 +- Package Spec generated @@ -0,0 +1 @@ +a0e5e1b53ca52f42d6fbcc0ee2a40483 biomass-0.12.0.tar.gz |