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author | CoprDistGit <infra@openeuler.org> | 2023-05-10 08:19:05 +0000 |
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committer | CoprDistGit <infra@openeuler.org> | 2023-05-10 08:19:05 +0000 |
commit | 43d19000a89ab72e0983bcf29bb1a2b361504b84 (patch) | |
tree | 82cd685721fd6375e0f450aa53a1b383d16375db | |
parent | a8399b28e94ae5034ad1562b71fd0f32c0f93b5f (diff) |
automatic import of python-elasticdeform
-rw-r--r-- | .gitignore | 1 | ||||
-rw-r--r-- | python-elasticdeform.spec | 130 | ||||
-rw-r--r-- | sources | 1 |
3 files changed, 132 insertions, 0 deletions
@@ -0,0 +1 @@ +/elasticdeform-0.5.0.tar.gz diff --git a/python-elasticdeform.spec b/python-elasticdeform.spec new file mode 100644 index 0000000..fbaa73e --- /dev/null +++ b/python-elasticdeform.spec @@ -0,0 +1,130 @@ +%global _empty_manifest_terminate_build 0 +Name: python-elasticdeform +Version: 0.5.0 +Release: 1 +Summary: Elastic deformations for N-D images. +License: BSD +URL: https://github.com/gvtulder/elasticdeform +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/b6/ee/562d0bc43151411ffcfbac1cb1419748df9fbffb2a2685c9735f3e7e6352/elasticdeform-0.5.0.tar.gz + +Requires: python3-numpy +Requires: python3-scipy + +%description +[](https://elasticdeform.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/test.yml) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/wheels.yml) +[](https://zenodo.org/badge/latestdoi/145003699) +This library implements elastic grid-based deformations for N-dimensional images. +The elastic deformation approach is described in +* Ronneberger, Fischer, and Brox, "U-Net: Convolutional Networks for Biomedical + Image Segmentation" (<https://arxiv.org/abs/1505.04597>) +* Çiçek et al., "3D U-Net: Learning Dense Volumetric + Segmentation from Sparse Annotation" (<https://arxiv.org/abs/1606.06650>) +The procedure generates a coarse displacement grid with a random displacement +for each grid point. This grid is then interpolated to compute a displacement for +each pixel in the input image. The input image is then deformed using the +displacement vectors and a spline interpolation. +In addition to the normal, forward deformation, this package also provides a +function that can backpropagate the gradient through the deformation. This makes +it possible to use the deformation as a layer in a convolutional neural network. +For convenience, TensorFlow and PyTorch wrappers are provided in `elasticdeform.tf` +and `elasticdeform.torch`. + +%package -n python3-elasticdeform +Summary: Elastic deformations for N-D images. +Provides: python-elasticdeform +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +BuildRequires: python3-cffi +BuildRequires: gcc +BuildRequires: gdb +%description -n python3-elasticdeform +[](https://elasticdeform.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/test.yml) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/wheels.yml) +[](https://zenodo.org/badge/latestdoi/145003699) +This library implements elastic grid-based deformations for N-dimensional images. +The elastic deformation approach is described in +* Ronneberger, Fischer, and Brox, "U-Net: Convolutional Networks for Biomedical + Image Segmentation" (<https://arxiv.org/abs/1505.04597>) +* Çiçek et al., "3D U-Net: Learning Dense Volumetric + Segmentation from Sparse Annotation" (<https://arxiv.org/abs/1606.06650>) +The procedure generates a coarse displacement grid with a random displacement +for each grid point. This grid is then interpolated to compute a displacement for +each pixel in the input image. The input image is then deformed using the +displacement vectors and a spline interpolation. +In addition to the normal, forward deformation, this package also provides a +function that can backpropagate the gradient through the deformation. This makes +it possible to use the deformation as a layer in a convolutional neural network. +For convenience, TensorFlow and PyTorch wrappers are provided in `elasticdeform.tf` +and `elasticdeform.torch`. + +%package help +Summary: Development documents and examples for elasticdeform +Provides: python3-elasticdeform-doc +%description help +[](https://elasticdeform.readthedocs.io/en/latest/?badge=latest) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/test.yml) +[](https://github.com/gvtulder/elasticdeform/actions/workflows/wheels.yml) +[](https://zenodo.org/badge/latestdoi/145003699) +This library implements elastic grid-based deformations for N-dimensional images. +The elastic deformation approach is described in +* Ronneberger, Fischer, and Brox, "U-Net: Convolutional Networks for Biomedical + Image Segmentation" (<https://arxiv.org/abs/1505.04597>) +* Çiçek et al., "3D U-Net: Learning Dense Volumetric + Segmentation from Sparse Annotation" (<https://arxiv.org/abs/1606.06650>) +The procedure generates a coarse displacement grid with a random displacement +for each grid point. This grid is then interpolated to compute a displacement for +each pixel in the input image. The input image is then deformed using the +displacement vectors and a spline interpolation. +In addition to the normal, forward deformation, this package also provides a +function that can backpropagate the gradient through the deformation. This makes +it possible to use the deformation as a layer in a convolutional neural network. +For convenience, TensorFlow and PyTorch wrappers are provided in `elasticdeform.tf` +and `elasticdeform.torch`. + +%prep +%autosetup -n elasticdeform-0.5.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-elasticdeform -f filelist.lst +%dir %{python3_sitearch}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Wed May 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.5.0-1 +- Package Spec generated @@ -0,0 +1 @@ +e3930acb3227fb1b13ebbf80d28901a4 elasticdeform-0.5.0.tar.gz |