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authorCoprDistGit <infra@openeuler.org>2023-05-29 09:25:43 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-29 09:25:43 +0000
commit09bb3575eef3f5b591eccd11fbaf63dc8d7fe0cf (patch)
tree40306b7bf707fd895e86fe0213c422a37686cf47
parente801435dfb2f64d44b735bc1fb7bbee9fe6d2662 (diff)
automatic import of python-i2t2
-rw-r--r--.gitignore1
-rw-r--r--python-i2t2.spec306
-rw-r--r--sources1
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diff --git a/.gitignore b/.gitignore
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+/I2T2-0.1.7.tar.gz
diff --git a/python-i2t2.spec b/python-i2t2.spec
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--- /dev/null
+++ b/python-i2t2.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-I2T2
+Version: 0.1.7
+Release: 1
+Summary: Suite of useful tools for manipulating medical images.
+License: Apache Software License 2.0
+URL: https://github.com/UCSF-intelligent-imaging/I2T2/tree/master/
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/db/44/447e5f7e5aa825b482935f2c4a451c399add382d1844fac90e7c892c8570/I2T2-0.1.7.tar.gz
+BuildArch: noarch
+
+Requires: python3-fastscript
+Requires: python3-ipykernel
+Requires: python3-ipython
+Requires: python3-jupyter
+Requires: python3-jupyterlab
+Requires: python3-matplotlib
+Requires: python3-nbdev
+Requires: python3-numpy
+Requires: python3-pandas
+Requires: python3-pillow
+Requires: python3-pydicom
+Requires: python3-pypi
+Requires: python3-twine
+Requires: python3-scipy
+Requires: python3-h5py
+
+%description
+# Intelligent Imaging Tools and Tasks (I2T2)
+> Library of useful tools for Medical Imaging Handling
+
+
+Instructions for installation and usage examples can be found below.
+
+## Install
+
+It's highly recommended you install `I2T2` and its dependencies in a virtual environment (conda or others), so that you don't interfere with system-wide python packages.
+
+1. Installing via github download:
+
+```python
+git clone https://github.com/UCSF-intelligent-imaging/I2T2/
+cd I2T2
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install -e .
+conda install -c conda-forge gdcm
+```
+
+2. Installing via pip (latest stable version)
+
+```
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install I2T2
+conda install -c conda-forge gdcm
+```
+
+## Test your installation
+
+```python
+conda activate I2T2
+python
+>>> import I2T2
+```
+
+NOTE:
+
+`I2T2` uses GDCM to uncompress some DICOMs.
+
+Make sure to have GDCM installed in your conda environment via `conda install -c conda-forge gdcm`
+
+```python
+conda activate I2T2
+python
+>>> import gdcm
+```
+
+## Using I2T2
+
+```
+# example usage:
+from I2T2.io import *
+import matplotlib.pyplot as plt
+
+data_path = '../data/knee/'
+try:
+ array = load_dcm(path_to_dicom_dir = data_path, sort_by_slice_location=True)
+ plt.imshow(array[:,:,0])
+ plt.show()
+except:
+ print('could not load array')
+```
+
+
+![png](docs/images/output_8_0.png)
+
+
+
+
+
+%package -n python3-I2T2
+Summary: Suite of useful tools for manipulating medical images.
+Provides: python-I2T2
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-I2T2
+# Intelligent Imaging Tools and Tasks (I2T2)
+> Library of useful tools for Medical Imaging Handling
+
+
+Instructions for installation and usage examples can be found below.
+
+## Install
+
+It's highly recommended you install `I2T2` and its dependencies in a virtual environment (conda or others), so that you don't interfere with system-wide python packages.
+
+1. Installing via github download:
+
+```python
+git clone https://github.com/UCSF-intelligent-imaging/I2T2/
+cd I2T2
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install -e .
+conda install -c conda-forge gdcm
+```
+
+2. Installing via pip (latest stable version)
+
+```
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install I2T2
+conda install -c conda-forge gdcm
+```
+
+## Test your installation
+
+```python
+conda activate I2T2
+python
+>>> import I2T2
+```
+
+NOTE:
+
+`I2T2` uses GDCM to uncompress some DICOMs.
+
+Make sure to have GDCM installed in your conda environment via `conda install -c conda-forge gdcm`
+
+```python
+conda activate I2T2
+python
+>>> import gdcm
+```
+
+## Using I2T2
+
+```
+# example usage:
+from I2T2.io import *
+import matplotlib.pyplot as plt
+
+data_path = '../data/knee/'
+try:
+ array = load_dcm(path_to_dicom_dir = data_path, sort_by_slice_location=True)
+ plt.imshow(array[:,:,0])
+ plt.show()
+except:
+ print('could not load array')
+```
+
+
+![png](docs/images/output_8_0.png)
+
+
+
+
+
+%package help
+Summary: Development documents and examples for I2T2
+Provides: python3-I2T2-doc
+%description help
+# Intelligent Imaging Tools and Tasks (I2T2)
+> Library of useful tools for Medical Imaging Handling
+
+
+Instructions for installation and usage examples can be found below.
+
+## Install
+
+It's highly recommended you install `I2T2` and its dependencies in a virtual environment (conda or others), so that you don't interfere with system-wide python packages.
+
+1. Installing via github download:
+
+```python
+git clone https://github.com/UCSF-intelligent-imaging/I2T2/
+cd I2T2
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install -e .
+conda install -c conda-forge gdcm
+```
+
+2. Installing via pip (latest stable version)
+
+```
+conda create -n I2T2 python=3.7
+conda activate I2T2
+pip install nbdev jupyter
+pip install I2T2
+conda install -c conda-forge gdcm
+```
+
+## Test your installation
+
+```python
+conda activate I2T2
+python
+>>> import I2T2
+```
+
+NOTE:
+
+`I2T2` uses GDCM to uncompress some DICOMs.
+
+Make sure to have GDCM installed in your conda environment via `conda install -c conda-forge gdcm`
+
+```python
+conda activate I2T2
+python
+>>> import gdcm
+```
+
+## Using I2T2
+
+```
+# example usage:
+from I2T2.io import *
+import matplotlib.pyplot as plt
+
+data_path = '../data/knee/'
+try:
+ array = load_dcm(path_to_dicom_dir = data_path, sort_by_slice_location=True)
+ plt.imshow(array[:,:,0])
+ plt.show()
+except:
+ print('could not load array')
+```
+
+
+![png](docs/images/output_8_0.png)
+
+
+
+
+
+%prep
+%autosetup -n I2T2-0.1.7
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-I2T2 -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon May 29 2023 Python_Bot <Python_Bot@openeuler.org> - 0.1.7-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..10e9509
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+01235117ea0876810e9e1dbf72fddba2 I2T2-0.1.7.tar.gz