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authorCoprDistGit <infra@openeuler.org>2023-05-31 07:24:10 +0000
committerCoprDistGit <infra@openeuler.org>2023-05-31 07:24:10 +0000
commit79db1051ae60e86af21359d40842c5efc10eb53f (patch)
tree42903d8cd6127841f58a9c51fb84f8322926fe47
parent33535cafa055615c13f630d347e05d856e99deb8 (diff)
automatic import of python-limix
-rw-r--r--.gitignore1
-rw-r--r--python-limix.spec249
-rw-r--r--sources1
3 files changed, 251 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
index e69de29..20550c7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/limix-3.0.4.tar.gz
diff --git a/python-limix.spec b/python-limix.spec
new file mode 100644
index 0000000..30972b3
--- /dev/null
+++ b/python-limix.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-limix
+Version: 3.0.4
+Release: 1
+Summary: Genetic analysis toolbox using mixed models
+License: MIT
+URL: https://github.com/limix/limix
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/d6/68/f878f7879c772016ebea618255a781408d057aec0f06673f7a8e5909344c/limix-3.0.4.tar.gz
+BuildArch: noarch
+
+
+%description
+# limix
+
+[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)
+
+Genomic analyses require flexible models that can be adapted to the needs of the user.
+
+Limix is a flexible and efficient linear mixed model library with interfaces to Python.
+It includes methods for
+
+- Single-variant association and interaction testing
+- Variance decompostion analysis with linear mixed models
+- Association and interaction set tests
+- Different utils for statistical analysis, basic i/o, and plotting.
+
+We have an extensive [documentation](https://limix.readthedocs.io) of the library.
+If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
+In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
+
+## Install
+
+> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
+> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
+
+Installation is easy and works on macOS, Linux, and Windows:
+
+```bash
+pip install limix
+```
+
+If you already have Limix but want to upgrade it to the latest version:
+
+```bash
+pip install limix --upgrade
+```
+
+## Interactive tutorials
+
+- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
+- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
+
+## Running tests
+
+After installation, you can test it
+
+```bash
+python -c "import limix; limix.test()"
+```
+
+as long as you have [pytest](https://docs.pytest.org/en/latest/).
+
+## Authors
+
+* [Christoph Lippert](https://github.com/clippert)
+* [Danilo Horta](https://github.com/horta)
+* [Francesco Paolo Casale](https://github.com/fpcasale)
+* [Oliver Stegle](https://github.com/ostegle)
+
+## License
+
+This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
+
+%package -n python3-limix
+Summary: Genetic analysis toolbox using mixed models
+Provides: python-limix
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-limix
+# limix
+
+[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)
+
+Genomic analyses require flexible models that can be adapted to the needs of the user.
+
+Limix is a flexible and efficient linear mixed model library with interfaces to Python.
+It includes methods for
+
+- Single-variant association and interaction testing
+- Variance decompostion analysis with linear mixed models
+- Association and interaction set tests
+- Different utils for statistical analysis, basic i/o, and plotting.
+
+We have an extensive [documentation](https://limix.readthedocs.io) of the library.
+If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
+In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
+
+## Install
+
+> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
+> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
+
+Installation is easy and works on macOS, Linux, and Windows:
+
+```bash
+pip install limix
+```
+
+If you already have Limix but want to upgrade it to the latest version:
+
+```bash
+pip install limix --upgrade
+```
+
+## Interactive tutorials
+
+- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
+- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
+
+## Running tests
+
+After installation, you can test it
+
+```bash
+python -c "import limix; limix.test()"
+```
+
+as long as you have [pytest](https://docs.pytest.org/en/latest/).
+
+## Authors
+
+* [Christoph Lippert](https://github.com/clippert)
+* [Danilo Horta](https://github.com/horta)
+* [Francesco Paolo Casale](https://github.com/fpcasale)
+* [Oliver Stegle](https://github.com/ostegle)
+
+## License
+
+This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
+
+%package help
+Summary: Development documents and examples for limix
+Provides: python3-limix-doc
+%description help
+# limix
+
+[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)
+
+Genomic analyses require flexible models that can be adapted to the needs of the user.
+
+Limix is a flexible and efficient linear mixed model library with interfaces to Python.
+It includes methods for
+
+- Single-variant association and interaction testing
+- Variance decompostion analysis with linear mixed models
+- Association and interaction set tests
+- Different utils for statistical analysis, basic i/o, and plotting.
+
+We have an extensive [documentation](https://limix.readthedocs.io) of the library.
+If you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) 💬 and have a chat with us 😃.
+In case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).
+
+## Install
+
+> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some
+> missing feature in limix 3.0.x. If that is the case, please, type `pip install "limix <3,>=2"` in your terminal.
+
+Installation is easy and works on macOS, Linux, and Windows:
+
+```bash
+pip install limix
+```
+
+If you already have Limix but want to upgrade it to the latest version:
+
+```bash
+pip install limix --upgrade
+```
+
+## Interactive tutorials
+
+- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)
+- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)
+
+## Running tests
+
+After installation, you can test it
+
+```bash
+python -c "import limix; limix.test()"
+```
+
+as long as you have [pytest](https://docs.pytest.org/en/latest/).
+
+## Authors
+
+* [Christoph Lippert](https://github.com/clippert)
+* [Danilo Horta](https://github.com/horta)
+* [Francesco Paolo Casale](https://github.com/fpcasale)
+* [Oliver Stegle](https://github.com/ostegle)
+
+## License
+
+This project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).
+
+%prep
+%autosetup -n limix-3.0.4
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-limix -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Wed May 31 2023 Python_Bot <Python_Bot@openeuler.org> - 3.0.4-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..c1e76f5
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+aa8f8858c5bf4e0195eda7e95f73af91 limix-3.0.4.tar.gz