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authorCoprDistGit <infra@openeuler.org>2023-04-10 22:51:44 +0000
committerCoprDistGit <infra@openeuler.org>2023-04-10 22:51:44 +0000
commit76ecc65567d380ccc6c145e6753a0ed5fd2de293 (patch)
tree799da5e74f71c118a3f2c8dc95fe327954220190
parent974a9087e8c3df7f64456d06a57ab06fe2b14245 (diff)
automatic import of python-probeinterface
-rw-r--r--.gitignore1
-rw-r--r--python-probeinterface.spec199
-rw-r--r--sources1
3 files changed, 201 insertions, 0 deletions
diff --git a/.gitignore b/.gitignore
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--- a/.gitignore
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+/probeinterface-0.2.16.tar.gz
diff --git a/python-probeinterface.spec b/python-probeinterface.spec
new file mode 100644
index 0000000..d398102
--- /dev/null
+++ b/python-probeinterface.spec
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+%global _empty_manifest_terminate_build 0
+Name: python-probeinterface
+Version: 0.2.16
+Release: 1
+Summary: Python package to handle probe layout, geometry and wiring to device.
+License: MIT License
+URL: https://pypi.org/project/probeinterface/
+Source0: https://mirrors.nju.edu.cn/pypi/web/packages/dd/3d/27dbfa13b8fa5fcbc6ed183f8ae7ff88a2c49f5f1da6214b9b5781558790/probeinterface-0.2.16.tar.gz
+BuildArch: noarch
+
+Requires: python3-numpy
+Requires: python3-pillow
+Requires: python3-sphinx-gallery
+Requires: python3-matplotlib
+Requires: python3-scipy
+Requires: python3-pandas
+Requires: python3-pytest
+Requires: python3-matplotlib
+Requires: python3-scipy
+Requires: python3-pandas
+
+%description
+# probeinterface
+
+A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
+
+Documentation : https://probeinterface.readthedocs.io/
+
+
+## Goals
+
+Make a lightweight package to handle:
+
+ * probe contact geometry (both 2D and 3D layouts)
+ * probe shape (contour of the probe, shape of channel contact, ...)
+ * probe wiring to device (the physical layout often doesn't match the channel ordering)
+ * combining several probes into a device with global geometry + global wiring
+ * exporting probe geometry data into JSON files
+ * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
+
+Bonus :
+
+ * optional plotting (based on `matplotlib`)
+ * load/save geometry using common formats (PRB, CSV, NWB, ...)
+ * handle SI length units correctly um/mm/...
+
+
+Target users/projet :
+
+ * spikeinterface team : integrate this into spikeextractor for channel location
+ * neo team : handle array_annotations for AnalogSignal
+ * spikeforest team : use this package for ploting probe activity
+ * phy team: integrate for probe display
+ * spyking-circus team : handle probe with this package
+ * kilosort team : handle probe with this package
+ * tridesclous team : handle probe with this package
+ * open ephys team : automatically generate channel map configuration files
+
+
+ Author: Samuel Garcia
+
+
+
+%package -n python3-probeinterface
+Summary: Python package to handle probe layout, geometry and wiring to device.
+Provides: python-probeinterface
+BuildRequires: python3-devel
+BuildRequires: python3-setuptools
+BuildRequires: python3-pip
+%description -n python3-probeinterface
+# probeinterface
+
+A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
+
+Documentation : https://probeinterface.readthedocs.io/
+
+
+## Goals
+
+Make a lightweight package to handle:
+
+ * probe contact geometry (both 2D and 3D layouts)
+ * probe shape (contour of the probe, shape of channel contact, ...)
+ * probe wiring to device (the physical layout often doesn't match the channel ordering)
+ * combining several probes into a device with global geometry + global wiring
+ * exporting probe geometry data into JSON files
+ * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
+
+Bonus :
+
+ * optional plotting (based on `matplotlib`)
+ * load/save geometry using common formats (PRB, CSV, NWB, ...)
+ * handle SI length units correctly um/mm/...
+
+
+Target users/projet :
+
+ * spikeinterface team : integrate this into spikeextractor for channel location
+ * neo team : handle array_annotations for AnalogSignal
+ * spikeforest team : use this package for ploting probe activity
+ * phy team: integrate for probe display
+ * spyking-circus team : handle probe with this package
+ * kilosort team : handle probe with this package
+ * tridesclous team : handle probe with this package
+ * open ephys team : automatically generate channel map configuration files
+
+
+ Author: Samuel Garcia
+
+
+
+%package help
+Summary: Development documents and examples for probeinterface
+Provides: python3-probeinterface-doc
+%description help
+# probeinterface
+
+A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments.
+
+Documentation : https://probeinterface.readthedocs.io/
+
+
+## Goals
+
+Make a lightweight package to handle:
+
+ * probe contact geometry (both 2D and 3D layouts)
+ * probe shape (contour of the probe, shape of channel contact, ...)
+ * probe wiring to device (the physical layout often doesn't match the channel ordering)
+ * combining several probes into a device with global geometry + global wiring
+ * exporting probe geometry data into JSON files
+ * loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech...) [Started here](https://gin.g-node.org/spikeinterface/probeinterface_library)
+
+Bonus :
+
+ * optional plotting (based on `matplotlib`)
+ * load/save geometry using common formats (PRB, CSV, NWB, ...)
+ * handle SI length units correctly um/mm/...
+
+
+Target users/projet :
+
+ * spikeinterface team : integrate this into spikeextractor for channel location
+ * neo team : handle array_annotations for AnalogSignal
+ * spikeforest team : use this package for ploting probe activity
+ * phy team: integrate for probe display
+ * spyking-circus team : handle probe with this package
+ * kilosort team : handle probe with this package
+ * tridesclous team : handle probe with this package
+ * open ephys team : automatically generate channel map configuration files
+
+
+ Author: Samuel Garcia
+
+
+
+%prep
+%autosetup -n probeinterface-0.2.16
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+ find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+ find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+ find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+ find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+ find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-probeinterface -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon Apr 10 2023 Python_Bot <Python_Bot@openeuler.org> - 0.2.16-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..9dcc023
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+b17d031f13863db1be18bdbf4678d00a probeinterface-0.2.16.tar.gz