automatic import of python-reademption

3 files changed, 116 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
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+/READemption-2.0.3.tar.gz
diff --git a/python-reademption.spec b/python-reademption.spec
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+%global _empty_manifest_terminate_build 0
+Name:		python-READemption
+Version:	2.0.3
+Release:	1
+Summary:	A RNA-Seq Analysis Pipeline
+License:	MIT License
+URL:		https://pypi.org/project/READemption/
+Source0:	https://mirrors.nju.edu.cn/pypi/web/packages/e5/84/1705e6e2e85a47989ea1751dddca5c571e416f5a4fb8eb7d4bd0dd9860b3/READemption-2.0.3.tar.gz
+BuildArch:	noarch
+
+Requires:	python3-biopython
+Requires:	python3-matplotlib
+Requires:	python3-pandas
+Requires:	python3-pysam
+Requires:	python3-seaborn
+Requires:	python3-sphinx-argparse
+
+%description
+READemption is a pipeline for the computational evaluation of RNA-Seq
+data. It was originally developed to process dRNA-Seq reads (as
+introduced by Sharma et al., Nature, 2010) originating from bacterial
+samples. Meanwhile is has been extended to process data generated in
+different experimental setups and from all domains of life. The
+functions which are accessible via a command-line interface cover read
+processing and aligning, coverage calculation, gene expression
+quantification, differential gene expression analysis as well as
+visualization. In order to set up and perform analyses quickly
+READemption follows the principal of “convention over configuration”:
+Once the input files are copied/linked into defined folders no further
+parameters have to be given. Still, READemption’s behavior can be
+adapted to specific needs of the user by parameters.
+
+%package -n python3-READemption
+Summary:	A RNA-Seq Analysis Pipeline
+Provides:	python-READemption
+BuildRequires:	python3-devel
+BuildRequires:	python3-setuptools
+BuildRequires:	python3-pip
+%description -n python3-READemption
+READemption is a pipeline for the computational evaluation of RNA-Seq
+data. It was originally developed to process dRNA-Seq reads (as
+introduced by Sharma et al., Nature, 2010) originating from bacterial
+samples. Meanwhile is has been extended to process data generated in
+different experimental setups and from all domains of life. The
+functions which are accessible via a command-line interface cover read
+processing and aligning, coverage calculation, gene expression
+quantification, differential gene expression analysis as well as
+visualization. In order to set up and perform analyses quickly
+READemption follows the principal of “convention over configuration”:
+Once the input files are copied/linked into defined folders no further
+parameters have to be given. Still, READemption’s behavior can be
+adapted to specific needs of the user by parameters.
+
+%package help
+Summary:	Development documents and examples for READemption
+Provides:	python3-READemption-doc
+%description help
+READemption is a pipeline for the computational evaluation of RNA-Seq
+data. It was originally developed to process dRNA-Seq reads (as
+introduced by Sharma et al., Nature, 2010) originating from bacterial
+samples. Meanwhile is has been extended to process data generated in
+different experimental setups and from all domains of life. The
+functions which are accessible via a command-line interface cover read
+processing and aligning, coverage calculation, gene expression
+quantification, differential gene expression analysis as well as
+visualization. In order to set up and perform analyses quickly
+READemption follows the principal of “convention over configuration”:
+Once the input files are copied/linked into defined folders no further
+parameters have to be given. Still, READemption’s behavior can be
+adapted to specific needs of the user by parameters.
+
+%prep
+%autosetup -n READemption-2.0.3
+
+%build
+%py3_build
+
+%install
+%py3_install
+install -d -m755 %{buildroot}/%{_pkgdocdir}
+if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
+if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
+if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
+if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
+pushd %{buildroot}
+if [ -d usr/lib ]; then
+	find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/lib64 ]; then
+	find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/bin ]; then
+	find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+if [ -d usr/sbin ]; then
+	find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
+fi
+touch doclist.lst
+if [ -d usr/share/man ]; then
+	find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
+fi
+popd
+mv %{buildroot}/filelist.lst .
+mv %{buildroot}/doclist.lst .
+
+%files -n python3-READemption -f filelist.lst
+%dir %{python3_sitelib}/*
+
+%files help -f doclist.lst
+%{_docdir}/*
+
+%changelog
+* Mon May 29 2023 Python_Bot <Python_Bot@openeuler.org> - 2.0.3-1
+- Package Spec generated
diff --git a/sources b/sources
new file mode 100644
index 0000000..99c9de0
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+435e6624974b1928fb25ba1ec2954873  READemption-2.0.3.tar.gz