automatic import of voro++openeuler24.09

6 files changed, 283 insertions, 0 deletions

diff --git a/.gitignore b/.gitignore
index e69de29..3b0eca4 100644
--- a/.gitignore
+++ b/.gitignore
@@ -0,0 +1 @@
+/voro++-0.4.6.tar.gz
diff --git a/CMakeLists.txt b/CMakeLists.txt
new file mode 100644
index 0000000..94e140a
--- /dev/null
+++ b/CMakeLists.txt
@@ -0,0 +1,25 @@
+# Set  the minimum  required version  of cmake  for a  project.
+cmake_minimum_required(VERSION 2.6)
+
+add_library(voro++ SHARED
+	cell.cc
+	common.cc
+	container.cc
+	unitcell.cc
+	v_compute.cc
+	c_loops.cc
+	v_base.cc wall.cc
+	pre_container.cc
+	container_prd.cc
+)
+set_target_properties(voro++ PROPERTIES VERSION 0.0.0 SOVERSION 0)
+
+add_executable(voro++-bin cmd_line.cc)
+set_target_properties(voro++-bin PROPERTIES OUTPUT_NAME voro++)
+target_link_libraries(voro++-bin voro++)
+
+file(GLOB_RECURSE HDR RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.hh)
+
+install(TARGETS voro++ LIBRARY DESTINATION lib${LIB_SUFFIX})
+install(FILES ${HDR} DESTINATION include)
+install(TARGETS voro++-bin DESTINATION bin)
diff --git a/sources b/sources
new file mode 100644
index 0000000..56423a1
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+2338b824c3b7b25590e18e8df5d68af9  voro++-0.4.6.tar.gz
diff --git a/voro++_man.patch b/voro++_man.patch
new file mode 100644
index 0000000..72a927f
--- /dev/null
+++ b/voro++_man.patch
@@ -0,0 +1,78 @@
+diff -rupN voro++-0.4.6/man/voro++.1 voro++-0.4.6-new/man/voro++.1
+--- voro++-0.4.6/man/voro++.1	2013-10-17 20:13:38.000000000 +0200
++++ voro++-0.4.6-new/man/voro++.1	2014-06-19 22:44:47.215792546 +0200
+@@ -82,7 +82,7 @@ grid size using the \-l and \-n options.
+ The utility accepts the following basic options:
+ 
+ .B
+-.IP \-c <string>
++.IP "\-c <string>"
+ This option allows the format of the output file to be customized to hold a
+ variety of statistics about the computed Voronoi cells. The specified string
+ can contain regular characters, plus control sequences beginning with
+@@ -97,7 +97,7 @@ that can be viewed using gnuplot using t
+ command. Caution: For large input files, the gnuplot output file will be
+ extremely large, so this option is best used on smaller systems.
+ .B
+-.IP \-h or \-\-help
++.IP "\-h or \-\-help"
+ This option prints out a summary of the command syntax and the available
+ options.
+ .B
+@@ -105,7 +105,7 @@ options.
+ This option prints out all the available control sequences for the customized
+ output.
+ .B
+-.IP -l <len>
++.IP "-l <len>"
+ Manually specify a typical length scale between particles, with which to
+ configure the internal grid size. For example, if the particles represent
+ densely-packed hard spheres of diameter d, then d would be an appropriate value
+@@ -114,13 +114,13 @@ this option will result in a small perfo
+ can be set up immediately, and it is not necessary to temporarily store the
+ input file contents while estimating the grid size.
+ .B
+-.IP -m <mem>
++.IP "-m <mem>"
+ Manually specify the initial number of particles that can be stored in each
+ block. By default a value of 8 is used. For any block where this limit is
+ reached, the code will dynamically allocate more memory as neccessary, so
+ usually it is not necessary to alter this.
+ .B
+-.IP -n <nx> <ny> <nz>
++.IP "-n <nx> <ny> <nz>"
+ Manually specify the internal computational grid to have nx, ny, and nz blocks
+ in the x, y, and z directions respectively, giving nx*ny*nz blocks in total.
+ Manually specifying the size will result in a small performance boost, since
+@@ -178,26 +178,26 @@ are implemented by applying extra plane
+ process. At present, four wall types are supported:
+ 
+ .B
+-.IP \-wb <x1> <x2> <x3> <x4> <x5> <x6>
++.IP "\-wb <x1> <x2> <x3> <x4> <x5> <x6>"
+ Add six plane wall objects to make a box containing the space x1<x<x2, x3<y<x4,
+ and x5<z<z6. This can be useful for embedding a smaller box within a larger
+ container, in cases when the influence of particles outside the smaller box
+ still need to be considered. This option is shorthand to avoid using the \-wp
+ option six times.
+ .B
+-.IP \-wc <x1> <x2> <x3> <x4> <x5> <x6> <x7>
++.IP "\-wc <x1> <x2> <x3> <x4> <x5> <x6> <x7>"
+ Add a cylindrical wall object, where (x1,x2,x3) is a point on the cylinder
+ axis, (x4,x5,x6) is a vector along the cylinder axis, and x7 is the cylinder
+ radius.
+ .B
+-.IP \-wo <x1> <x2> <x3> <x4> <x5> <x6> <x7>
++.IP "\-wo <x1> <x2> <x3> <x4> <x5> <x6> <x7>"
+ Add a conical wall object, with apex at (x1,x2,x3), axis along (x4,x5,x6), and
+ half angle x7 (specified in radians).
+ .B
+-.IP \-ws <x1> <x2> <x3> <x4>
++.IP "\-ws <x1> <x2> <x3> <x4>"
+ Add a spherical wall object, centered on (x1,x2,x3), with radius x4.
+ .B
+-.IP \-wp <x1> <x2> <x3> <x4>
++.IP "\-wp <x1> <x2> <x3> <x4>"
+ Add a plane wall object, with normal (x1,x2,x3), and displacement x4.
+ 
+ Each wall is accounted for using a single approximating plane; several of the
diff --git a/voro++_virtual-destructor.patch b/voro++_virtual-destructor.patch
new file mode 100644
index 0000000..0670def
--- /dev/null
+++ b/voro++_virtual-destructor.patch
@@ -0,0 +1,89 @@
+diff -rupN voro++-0.4.6/src/cell.hh voro++-0.4.6-new/src/cell.hh
+--- voro++-0.4.6/src/cell.hh	2013-10-17 19:54:13.000000000 +0200
++++ voro++-0.4.6-new/src/cell.hh	2014-06-14 13:48:43.119907250 +0200
+@@ -84,7 +84,7 @@ class voronoicell_base {
+ 		 * the positions of the vertices. */
+ 		double *pts;
+ 		voronoicell_base();
+-		~voronoicell_base();
++		virtual ~voronoicell_base();
+ 		void init_base(double xmin,double xmax,double ymin,double ymax,double zmin,double zmax);
+ 		void init_octahedron_base(double l);
+ 		void init_tetrahedron_base(double x0,double y0,double z0,double x1,double y1,double z1,double x2,double y2,double z2,double x3,double y3,double z3);
+@@ -416,7 +416,7 @@ class voronoicell_neighbor : public voro
+ 		 * face that is clockwise from the jth edge. */
+ 		int **ne;
+ 		voronoicell_neighbor();
+-		~voronoicell_neighbor();
++		virtual ~voronoicell_neighbor();
+ 		void operator=(voronoicell &c);
+ 		void operator=(voronoicell_neighbor &c);
+ 		/** Cuts the Voronoi cell by a particle whose center is at a
+diff -rupN voro++-0.4.6/src/c_loops.hh voro++-0.4.6-new/src/c_loops.hh
+--- voro++-0.4.6/src/c_loops.hh	2013-10-17 20:18:28.000000000 +0200
++++ voro++-0.4.6-new/src/c_loops.hh	2014-06-14 13:43:40.009916206 +0200
+@@ -124,6 +124,7 @@ class c_loop_base {
+ 		c_loop_base(c_class &con) : nx(con.nx), ny(con.ny), nz(con.nz),
+ 					    nxy(con.nxy), nxyz(con.nxyz), ps(con.ps),
+ 					    p(con.p), id(con.id), co(con.co) {}
++		virtual ~c_loop_base(){}
+ 		/** Returns the position vector of the particle currently being
+ 		 * considered by the loop.
+ 		 * \param[out] (x,y,z) the position vector of the particle. */
+diff -rupN voro++-0.4.6/src/container.hh voro++-0.4.6-new/src/container.hh
+--- voro++-0.4.6/src/container.hh	2013-10-17 19:54:13.000000000 +0200
++++ voro++-0.4.6-new/src/container.hh	2014-06-14 13:48:00.484908509 +0200
+@@ -57,7 +57,7 @@ class wall_list {
+ 		 */
+ 		wall **wep;
+ 		wall_list();
+-		~wall_list();
++		virtual ~wall_list();
+ 		/** Adds a wall to the list.
+ 		 * \param[in] w the wall to add. */
+ 		inline void add_wall(wall *w) {
+@@ -161,7 +161,7 @@ class container_base : public voro_base,
+ 		container_base(double ax_,double bx_,double ay_,double by_,double az_,double bz_,
+ 				int nx_,int ny_,int nz_,bool xperiodic_,bool yperiodic_,bool zperiodic_,
+ 				int init_mem,int ps_);
+-		~container_base();
++		virtual ~container_base();
+ 		bool point_inside(double x,double y,double z);
+ 		void region_count();
+ 		/** Initializes the Voronoi cell prior to a compute_cell
+diff -rupN voro++-0.4.6/src/container_prd.hh voro++-0.4.6-new/src/container_prd.hh
+--- voro++-0.4.6/src/container_prd.hh	2013-10-17 19:54:13.000000000 +0200
++++ voro++-0.4.6-new/src/container_prd.hh	2014-06-14 13:46:47.345910670 +0200
+@@ -93,7 +93,7 @@ class container_periodic_base : public u
+ 		const int ps;
+ 		container_periodic_base(double bx_,double bxy_,double by_,double bxz_,double byz_,double bz_,
+ 				int nx_,int ny_,int nz_,int init_mem_,int ps);
+-		~container_periodic_base();
++		virtual ~container_periodic_base();
+ 		/** Prints all particles in the container, including those that
+ 		 * have been constructed in image blocks. */
+ 		inline void print_all_particles() {
+diff -rupN voro++-0.4.6/src/pre_container.hh voro++-0.4.6-new/src/pre_container.hh
+--- voro++-0.4.6/src/pre_container.hh	2013-10-17 19:54:13.000000000 +0200
++++ voro++-0.4.6-new/src/pre_container.hh	2014-06-14 13:40:25.604921950 +0200
+@@ -53,7 +53,7 @@ class pre_container_base {
+ 		const bool zperiodic;
+ 		void guess_optimal(int &nx,int &ny,int &nz);
+ 		pre_container_base(double ax_,double bx_,double ay_,double by_,double az_,double bz_,bool xperiodic_,bool yperiodic_,bool zperiodic_,int ps_);
+-		~pre_container_base();
++		virtual ~pre_container_base();
+ 		/** Calculates and returns the total number of particles stored
+ 		 * within the class.
+ 		 * \return The number of particles. */
+diff -rupN voro++-0.4.6/src/v_base.hh voro++-0.4.6-new/src/v_base.hh
+--- voro++-0.4.6/src/v_base.hh	2013-10-17 19:54:13.000000000 +0200
++++ voro++-0.4.6-new/src/v_base.hh	2014-06-14 13:40:14.507922277 +0200
+@@ -57,7 +57,7 @@ class voro_base {
+ 		static const unsigned int wl[wl_seq_length*wl_hgridcu];
+ 		bool contains_neighbor(const char* format);
+ 		voro_base(int nx_,int ny_,int nz_,double boxx_,double boxy_,double boxz_);
+-		~voro_base() {delete [] mrad;}
++		virtual ~voro_base() {delete [] mrad;}
+ 	protected:
+ 		/** A custom int function that returns consistent stepping
+ 		 * for negative numbers, so that (-1.5, -0.5, 0.5, 1.5) maps
diff --git a/voroplusplus.spec b/voroplusplus.spec
new file mode 100644
index 0000000..1573f73
--- /dev/null
+++ b/voroplusplus.spec
@@ -0,0 +1,89 @@
+%undefine __cmake_in_source_build
+
+Name:           voro++
+Version:        0.4.6
+Release:        3
+Summary:        Library for 3D computations of the Voronoi tessellation
+
+License:        BSD-3-Clause-LBNL
+URL:            http://math.lbl.gov/voro++/
+Source0:        http://math.lbl.gov/voro++/download/dir/%{name}-%{version}.tar.gz
+Source1:        CMakeLists.txt
+# Make base class destructors virtual
+Patch0:         voro++_virtual-destructor.patch
+# Fix manpage formatting
+Patch1:         voro++_man.patch
+
+BuildRequires:  cmake gcc-c++ make
+
+%description
+Voro++ is a software library for carrying out three-dimensional computations
+of the Voronoi tessellation. A distinguishing feature of the Voro++ library
+is that it carries out cell-based calculations, computing the Voronoi cell for
+each particle individually. It is particularly well-suited for applications
+that rely on cell-based statistics, where features of Voronoi cells (e.g.
+volume, centroid, number of faces) can be used to analyze a system of particles.
+
+
+%package        devel
+Summary:        %{name} headers
+Requires:       %{name}%{?_isa} = %{version}-%{release}
+
+%description    devel
+Header files for %{name}.
+
+
+%package        doc
+Summary:        %{name} documentation
+BuildArch:      noarch
+
+%description doc
+Documentation for %{name}.
+
+
+%prep
+%autosetup -p1
+install -m 0644 %{SOURCE1} src
+
+
+%build
+%cmake -S src
+%make_build
+
+%install
+%make_install
+install -D -p -m 0644 man/voro++.1 %{buildroot}%{_mandir}/man1/voro++.1
+# Fix path in examples
+find examples -name "*.cc" -exec sed -i 's/"voro++.hh"/<voro++\/voro++.hh>/g' '{}' \;
+cp config.mk examples/
+find examples -name "Makefile" -exec sed -i 's/..\/..\/config.mk/..\/config.mk/g' '{}' \;
+
+
+%files
+%license LICENSE
+%doc README NEWS
+%{_bindir}/%{name}
+%{_mandir}/man1/*
+%{_libdir}/lib%{name}.so.*
+
+
+%files devel
+%{_includedir}/*
+%{_libdir}/lib%{name}.so
+
+%files doc
+%doc LICENSE
+%doc html/
+%doc examples/
+%doc scripts/
+
+
+%changelog
+* Mon Nov 18 2024 Funda Wang <fundawang@yeah.net> - 0.4.6-3
+- adopt to new cmake macro
+
+* Tue Oct 26 2021 chenchen <chen_aka_jan@163.com> - 0.4.6-2
+- change the spec file name to be the same as the repo name
+
+* Wed Aug 11 2021 herengui <herengui@uniontech.com> - 0.4.6-1
+- Package init