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|
%global _empty_manifest_terminate_build 0
Name: python-PyLEMS
Version: 0.6.0
Release: 1
Summary: A Python library for working with the Low Entropy Model Specification language (LEMS)
License: LGPL
URL: https://github.com/LEMS/pylems
Source0: https://mirrors.nju.edu.cn/pypi/web/packages/0d/2d/111124bcfe3372b0f7f1eeac6a62dd12d94b869aeaf75c6ffda5c2bbacea/PyLEMS-0.6.0.tar.gz
BuildArch: noarch
Requires: python3-lxml
Requires: python3-typing
%description
## PyLEMS
[](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [](https://pylems.readthedocs.io/en/latest/?badge=latest)
A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models.
For more about PyLEMS see:
Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
_**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_
For more details on LEMS see:
Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver,
**LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**,
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079
### Installation
A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html):
pip install pylems
To install as root:
sudo pip install pylems
Alternatively, you can obtain the latest version with
git clone https://github.com/LEMS/pylems.git
cd pylems
git checkout development # optional
sudo python setup.py install
### Usage as a LEMS model simulator
pylems [options] LEMS_file
**Options**
- -I/-include path - Adds a directory to the model file include search path
### Examples
**NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)**
- Example 0 -- Working
- Example 1 -- Working
- Example 2 -- Working
- Example 3 -- Working
- Example 4 -- Not working (Unsupported in PyLEMS: KSChannel)
- Example 5 -- Working
- Example 6 -- Working
- Example 7 -- Working
- Example 8 -- Working
- Example 9 -- Working
- Example 10 -- Working
- Example 11 -- Working
- Example 12 -- Not working (Unsupported in PyLEMS: Property)
- Example 13 -- Working
- Example 14 -- Not working (Unsupported in PyLEMS: Property)
- Example 15 -- Working
- Example 16 -- Working (apart from spikeArray)
- Example 17 -- Working
- Example 18 -- Working
**LEMS examples (in directory examples)**
- example1.xml -- Working
- example2.xml -- Working
- example3.xml -- Working
- example4.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example5.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example6.xml -- Working
-- TODO: Rest of examples require an update to the `<Simulation>` element,
i.e. use `<Simulation...>` not `<SimulationSet...>`, to work in PyLEMS
**LEMS elements that do not work**
- KSChannel
- Property
- XPath based parameters - PathParameter
- Assertions
**Tasks TODO**
- Implement flattening
- Decouple events from runnables
- Improve dimension-checking on expressions.
### Travis integration
pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/).
[](https://travis-ci.com/LEMS/pylems)
This code is distributed under the terms of the GNU Lesser General Public License.
%package -n python3-PyLEMS
Summary: A Python library for working with the Low Entropy Model Specification language (LEMS)
Provides: python-PyLEMS
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: python3-pip
%description -n python3-PyLEMS
## PyLEMS
[](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [](https://pylems.readthedocs.io/en/latest/?badge=latest)
A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models.
For more about PyLEMS see:
Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
_**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_
For more details on LEMS see:
Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver,
**LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**,
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079
### Installation
A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html):
pip install pylems
To install as root:
sudo pip install pylems
Alternatively, you can obtain the latest version with
git clone https://github.com/LEMS/pylems.git
cd pylems
git checkout development # optional
sudo python setup.py install
### Usage as a LEMS model simulator
pylems [options] LEMS_file
**Options**
- -I/-include path - Adds a directory to the model file include search path
### Examples
**NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)**
- Example 0 -- Working
- Example 1 -- Working
- Example 2 -- Working
- Example 3 -- Working
- Example 4 -- Not working (Unsupported in PyLEMS: KSChannel)
- Example 5 -- Working
- Example 6 -- Working
- Example 7 -- Working
- Example 8 -- Working
- Example 9 -- Working
- Example 10 -- Working
- Example 11 -- Working
- Example 12 -- Not working (Unsupported in PyLEMS: Property)
- Example 13 -- Working
- Example 14 -- Not working (Unsupported in PyLEMS: Property)
- Example 15 -- Working
- Example 16 -- Working (apart from spikeArray)
- Example 17 -- Working
- Example 18 -- Working
**LEMS examples (in directory examples)**
- example1.xml -- Working
- example2.xml -- Working
- example3.xml -- Working
- example4.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example5.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example6.xml -- Working
-- TODO: Rest of examples require an update to the `<Simulation>` element,
i.e. use `<Simulation...>` not `<SimulationSet...>`, to work in PyLEMS
**LEMS elements that do not work**
- KSChannel
- Property
- XPath based parameters - PathParameter
- Assertions
**Tasks TODO**
- Implement flattening
- Decouple events from runnables
- Improve dimension-checking on expressions.
### Travis integration
pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/).
[](https://travis-ci.com/LEMS/pylems)
This code is distributed under the terms of the GNU Lesser General Public License.
%package help
Summary: Development documents and examples for PyLEMS
Provides: python3-PyLEMS-doc
%description help
## PyLEMS
[](https://github.com/LEMS/pylems/actions/workflows/ci.yml) [](https://pylems.readthedocs.io/en/latest/?badge=latest)
A LEMS (http://lems.github.io/LEMS) simulator written in Python which can be used to run NeuroML2 (http://neuroml.org/neuroml2.php) models.
For more about PyLEMS see:
Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson,
**libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience**
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038
_**PLEASE CITE THE PAPER ABOVE IF YOU USE PYLEMS!**_
For more details on LEMS see:
Robert C. Cannon, Padraig Gleeson, Sharon Crook, Gautham Ganapathy, Boris Marin, Eugenio Piasini and R. Angus Silver,
**LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2**,
[Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00079/abstract), doi: 10.3389/fninf.2014.00079
### Installation
A stable version of PyLEMS is [available on PyPI](https://pypi.python.org/pypi/PyLEMS) using [pip](https://pip.pypa.io/en/latest/installing.html):
pip install pylems
To install as root:
sudo pip install pylems
Alternatively, you can obtain the latest version with
git clone https://github.com/LEMS/pylems.git
cd pylems
git checkout development # optional
sudo python setup.py install
### Usage as a LEMS model simulator
pylems [options] LEMS_file
**Options**
- -I/-include path - Adds a directory to the model file include search path
### Examples
**NeuroML examples (from https://github.com/NeuroML/NeuroML2/tree/development/NeuroML2CoreTypes)**
- Example 0 -- Working
- Example 1 -- Working
- Example 2 -- Working
- Example 3 -- Working
- Example 4 -- Not working (Unsupported in PyLEMS: KSChannel)
- Example 5 -- Working
- Example 6 -- Working
- Example 7 -- Working
- Example 8 -- Working
- Example 9 -- Working
- Example 10 -- Working
- Example 11 -- Working
- Example 12 -- Not working (Unsupported in PyLEMS: Property)
- Example 13 -- Working
- Example 14 -- Not working (Unsupported in PyLEMS: Property)
- Example 15 -- Working
- Example 16 -- Working (apart from spikeArray)
- Example 17 -- Working
- Example 18 -- Working
**LEMS examples (in directory examples)**
- example1.xml -- Working
- example2.xml -- Working
- example3.xml -- Working
- example4.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example5.xml -- Not working (Unsupported in PyLEMS: KSChannel)
- example6.xml -- Working
-- TODO: Rest of examples require an update to the `<Simulation>` element,
i.e. use `<Simulation...>` not `<SimulationSet...>`, to work in PyLEMS
**LEMS elements that do not work**
- KSChannel
- Property
- XPath based parameters - PathParameter
- Assertions
**Tasks TODO**
- Implement flattening
- Decouple events from runnables
- Improve dimension-checking on expressions.
### Travis integration
pylems is integrated with the the [Travis Continuous Integration service](http://travis-ci.com/).
[](https://travis-ci.com/LEMS/pylems)
This code is distributed under the terms of the GNU Lesser General Public License.
%prep
%autosetup -n PyLEMS-0.6.0
%build
%py3_build
%install
%py3_install
install -d -m755 %{buildroot}/%{_pkgdocdir}
if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi
if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi
if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi
if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi
pushd %{buildroot}
if [ -d usr/lib ]; then
find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/lib64 ]; then
find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/bin ]; then
find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst
fi
if [ -d usr/sbin ]; then
find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst
fi
touch doclist.lst
if [ -d usr/share/man ]; then
find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst
fi
popd
mv %{buildroot}/filelist.lst .
mv %{buildroot}/doclist.lst .
%files -n python3-PyLEMS -f filelist.lst
%dir %{python3_sitelib}/*
%files help -f doclist.lst
%{_docdir}/*
%changelog
* Fri Apr 07 2023 Python_Bot <Python_Bot@openeuler.org> - 0.6.0-1
- Package Spec generated
|
