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@@ -0,0 +1 @@ +/abeona-0.45.0.tar.gz diff --git a/python-abeona.spec b/python-abeona.spec new file mode 100644 index 0000000..4ef6920 --- /dev/null +++ b/python-abeona.spec @@ -0,0 +1,97 @@ +%global _empty_manifest_terminate_build 0 +Name: python-abeona +Version: 0.45.0 +Release: 1 +Summary: please add a summary manually as the author left a blank one +License: Apache-2.0 +URL: https://github.com/winni2k/abeona +Source0: https://mirrors.nju.edu.cn/pypi/web/packages/99/98/8e2d68c9e8560ea22b3791fd150efb9b5bdf139195144d75309c9c8de7e9/abeona-0.45.0.tar.gz +BuildArch: noarch + +Requires: python3-cortexpy +Requires: python3-pandas +Requires: python3-progressbar2 +Requires: python3-pysam + +%description +abeona v0.45.0 +A simple transcriptome assembler based on kallisto and Cortex graphs. +Abeona consists of the following stages: +1. Assembly of reads into a De Bruijn graph +2. Pruning of tips and low-coverage unitigs +3. Partitioning of the De Bruijn graph into subgraphs +4. Generation of candidate transcripts by simple path traversal +5. Filtering of candidate transcripts by kallisto + +%package -n python3-abeona +Summary: please add a summary manually as the author left a blank one +Provides: python-abeona +BuildRequires: python3-devel +BuildRequires: python3-setuptools +BuildRequires: python3-pip +%description -n python3-abeona +abeona v0.45.0 +A simple transcriptome assembler based on kallisto and Cortex graphs. +Abeona consists of the following stages: +1. Assembly of reads into a De Bruijn graph +2. Pruning of tips and low-coverage unitigs +3. Partitioning of the De Bruijn graph into subgraphs +4. Generation of candidate transcripts by simple path traversal +5. Filtering of candidate transcripts by kallisto + +%package help +Summary: Development documents and examples for abeona +Provides: python3-abeona-doc +%description help +abeona v0.45.0 +A simple transcriptome assembler based on kallisto and Cortex graphs. +Abeona consists of the following stages: +1. Assembly of reads into a De Bruijn graph +2. Pruning of tips and low-coverage unitigs +3. Partitioning of the De Bruijn graph into subgraphs +4. Generation of candidate transcripts by simple path traversal +5. Filtering of candidate transcripts by kallisto + +%prep +%autosetup -n abeona-0.45.0 + +%build +%py3_build + +%install +%py3_install +install -d -m755 %{buildroot}/%{_pkgdocdir} +if [ -d doc ]; then cp -arf doc %{buildroot}/%{_pkgdocdir}; fi +if [ -d docs ]; then cp -arf docs %{buildroot}/%{_pkgdocdir}; fi +if [ -d example ]; then cp -arf example %{buildroot}/%{_pkgdocdir}; fi +if [ -d examples ]; then cp -arf examples %{buildroot}/%{_pkgdocdir}; fi +pushd %{buildroot} +if [ -d usr/lib ]; then + find usr/lib -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/lib64 ]; then + find usr/lib64 -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/bin ]; then + find usr/bin -type f -printf "/%h/%f\n" >> filelist.lst +fi +if [ -d usr/sbin ]; then + find usr/sbin -type f -printf "/%h/%f\n" >> filelist.lst +fi +touch doclist.lst +if [ -d usr/share/man ]; then + find usr/share/man -type f -printf "/%h/%f.gz\n" >> doclist.lst +fi +popd +mv %{buildroot}/filelist.lst . +mv %{buildroot}/doclist.lst . + +%files -n python3-abeona -f filelist.lst +%dir %{python3_sitelib}/* + +%files help -f doclist.lst +%{_docdir}/* + +%changelog +* Fri May 05 2023 Python_Bot <Python_Bot@openeuler.org> - 0.45.0-1 +- Package Spec generated @@ -0,0 +1 @@ +be891d0d847cc4f93bc1c7e1581b8ad8 abeona-0.45.0.tar.gz |